DCAR_023261 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_023261

Identifier:

DCAR_023261.gene

Locus Tag:

DCAR_023261

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_023261, is a part of gene, DCAR_023261.
The genetic_marker, MK009648 6_212946, is located in gene, DCAR_023261.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_023261	DCAR_023261.mRNA	mRNA	DCARv2_Chr6:212196..221244

Sequence:

TCCAACAAATCAACGCTTTTTCTCCACGAGGTCTCCTTGTTTTTTCCCAC
CGATATCTTCATTGTACCAGCGCTGTAACAATAAACTCATTCAACTGTCC
CATCTTAATACTCATACATATTCTTGGAATCAGTACAGACACTGATACAC
ACACATATATACAGACAGTCAAATTGTAGAAGACCTTTTAGTTCTACATT
CCAGCTGCATGCAGGTTCTTGATTGAATGCTTTGTTTTCTTTTGCTGAAT
TTTGCTTTTATGATAAAATGTACAACTAGTTTACTACTCTTTGTGTTTTT
CGTGGTGCGTAAGGTATGCTTGAAGATTGAGATAGATTTGTTATGTTTAA
TTGGGTTGAAATTTCTGATGCCCCTGTTTTTGTTTTGTTGAAAATTTGCA
AAGATATTTTGGGTTAATCCGGATTTAGGTATTTTTTTCCCGCTTCTTTT
CTTGATAATAACCGAAAGCGAATTTTTTGACTCCATTGGAATTTATCGTA
TTTGGTACTTTAGTTTATCTGTTTATGGCGTGTACTGTAATTTGGTTGTT
CAGTCTTGGTTAAAGTTATCTTGAACATCCATTTCGGTTTTGTCAGAGGA
CAATGGCATGGTTTCGAATGGAACTGCATGAAAATTGTGCTAAAGGCCTC
AACTTTACAAAGGATGCTTGTTTTCTTCTGAAGAAGAATTGGGCCCTCAA
TCTATTTGGCTGAAAAATTCAAACTTAATTTTGATTCTCCGCTGTTTATC
CGTGTGGTCAGATGATACTTTTGTAGTATAAATTTTAACTTTCTTGGTAT
TTTCATGTCCTTGTCTGCAATTGTTCTTAGTTCAGAGGATTGCAGCATAT
TTGGTTTTTTGCCTTTTACATTATTTTGTGTCAGATATACGTCATGCATT
TCATTTGTTGTAGTGATCCTGGTTGACTATCTACTCTCTCTATCTTTTGT
TTTCAGTGTGCAGCTTGAGTAATGGATGCTTCTGACAAAGCTCAGGAATA
TATGAAAACGAATGGAAATGAGAAGCCTAAGTCTAGAAGCTCCACAAATG
GAATGCGGAGTGCATCAATATCCATTCCGATGTATTCTCTGGATTGCAGT
GATACAGAAAATAGTTTCTCAGGTCGTAGTGGTCCGTTGTGTACTGAAAG
AAAAATATCATACACGCAAATGAGTGGTCCTCTTTATGCAAACCTTAAAA
ATGACAACTGTTTTCAAGATACACAAGGTGCAATCGGGAGCAGAGCAACT
GAGGCAACATTGGAGAAGTACCCTTCGGTCAATGGATTGGTTCAAATTGA
TTGGCCACATAACAATCATGTGGTAACAAATGAAAATTTATTAAGTTCTG
GTCAACTCGGAATGTGTAATGACCCGTATTGCACAACATGCCCCACTTAC
TTTGAAGGGCAGCGAAAGAACAAGAAAGTATCCAGTATATCTGATCAGAA
GGTTTGTCCCTCCCCTTGGCCACTATATCTTTATCTTTTTTTCCCATCCT
ATATATCTGATTATTTATGTCTCCATCTTTCCTCGTCTTAAAAAATTGGA
CTTCTTGCTGTACGTGTATGTGGTTTGACTATGTAGTTGCTCCATTGTTT
GATCAAAGTCATTTTTTATCTGAAATTGGGACATAATTTCAGACTTGTAG
ACCTAGCTAGCTTAATTTTTAGAAGAGATATAAGTGTGTCCACCACCATC
AGTCACAAATGCTGCATCGCTAAGTTTGTTTTAGAGTTCTGACACAACAC
TTGAGAAAACTAGAATCTTCCATATAGGGCTGCAGATAGTAGCAGGCTCG
ACTCAGATTCAATTCAACTTTTGTCAATAATATTCAGATCCAATTTTAAA
TGATAAAAATTTGAGATGTACTGACACGTGAGTGTTTCTCTAAATTATTG
TAAACTTATAAGCTGGGAGTATGAGTCTTCATTCTGTTTTTTACAGGTAC
AATGATTTTTGTATAGTCAGTGGCAGTAAGATGTTACTTTTTTTATTTCA
CCATTCTATGTATATTGCCTCTGTGTGCCCTCTGAAGTTAACTAATTGTG
TTTTGGCAGAAGCTTCCTTATATCAATTACCAGCAGTTTCCTATCCCTAC
CATCAAACAGGGAGATGCAAAAGGCTGGGCATGGAGAATGTTTTTTTCTC
TGTATCGATGTATTCCGGGAGTCATGAATCCACATGCTAAAATCGTTCAA
TACTGGAATAAGTTCTTTGTCATCTCGTGCTTATTTGCGGTTTTTCTAGA
CCCACTCTTCTTCTTTTTGCTATCTGTAAAGAAGGTATGGACATTTCCCT
ATGAATGATGAGAGCTATAATCAATCATTAATTCTATTCTTTAAATTCGC
TCTGAGGTTTCTCCAATTACTCTGACAAGTCTCTCTTGACTTGGATATAA
ATTCTTCTTTAACTTCCTTAATTGTGGTAGTGAGTCATGAGAATGAATGT
CCTTTTCCAAATTATACTATGCATTCCTCGACTTCAATATAGATAACCAT
TTTGACATTTAAAAGTCATTTGATCATTACTACCACACATTTTATTAATG
CAAACAACACGTGTCATAGTTATCACCTTCATCTTTTTTATCACCTTCAT
CTTGGTAAAAAATGCTTTTGTGTGCAGGCTTGTTTTTATTTTGGAATTCT
TATAGAAGAAAGGCAACTTAGATGCCATTCTCTTTGTAACAGGAACACAA
ATGCATAGTATTTAACGAGACCATGACAAAAGTTCTTATCACTCTGAGAA
GCCTGACTGATTTCATTTACTTCTTGCATGTGCTTCTTCAGGTAACCAAG
TTTTCTTTATACAAACCATTCAGTGTTCATATCGTGAAAGTTGGTTTTGC
TACATACTGTGAACAACACTACATATTGAAGAGTGGCTATCACGAGATTC
TGAACCAAAGTAATTGTGTATATAAATAATATATTGTAGTGTGTTCTTTA
AATTATTATGTGTGTAGAAACCGGGAATTAAGCAGTGGGATGCAACTAAA
CTGTTCATTATCAACTGGTAACATATAGTTCTTAGTTTTGGTGAATTGAG
TTGTTTATGACTACCTTATAGCCTAGAATATGTTAAAGTCATGAAAGTGA
TGCAGCAAAAACTTTAAGCACATAATGACAATATGACATGTTCTGAGTTA
GTCCTACATGTTGCTTGTGTTGATCTCAACGTGGCAGATGAACATATTGT
GGTGTTCTTGATACTTATATTTGATAATATTCTTATATGCTTTATAACTT
GCTGCTTTGCAGTTTAGACTGGCGTATGTTGCTCCTGAATCAAGAGTTGT
GGGTTCTGGTGATCTAGTTGACCGTCCAAGGAAAATAGCTCTCAATTATC
TCTACGGGCACTTTCTTATTGATTTCTTTGTAGTGCTACCTCTTCCCCAA
GTATGTAATATATATATCACTTCCCTTACTATTTTTGTATGTGCGAAAAT
ATATATATTTATTATTATCGATGATTTGGACAAATTAATCATATTCTAAG
ATTTGCTGATGTTTAATTGGCTAAATGAGTTAGTGTTGATGATTAAAATT
ATAAAATTTATAATTGTTTTATAAATTATAATTGGTTCCCTAGTCCAACT
CCTTCTGTAATTATAGAAACCAAACTCTAAAATATTAAACTTGCCGAAAT
AACTAAAAACAATTCATTAATAATTGGCACAACTGTAATAAAGGGTCCAG
TTATTTGAACAAACACAAATGTATGTTTCCTGAATTAGTCAAAAGTGTTA
TATCTTTATGATTGTTCACTTTTAATGGAAGGTTTACAAGAGACTGAATA
ATTAAGTGGAAAAAAGCCTATTGGTTGGAAGGCCAAGTTTAGAAACTGAT
ATAGCTTTTGTATATCTAAGATGTATCTTTTCTTTAACTGTTTGCTCGCT
TTTCTGTCTACATACACATGGAAATAAATTGGGTCCTCCTAAATGTGTAG
ATAATTATATGGCTGGTACTCAAAAAGTTTAAAGGATCTTCTGGTGCAAA
TTATGCAAAAAACTTCTTGCGAGCAGCAATTCTTGTTCAGTATATTCCGA
GGTTGTATAGGATTCTTCCTATGCTTGCTGGTCAGACGGCAAGCGGCTTT
ATCTTCGAGTCAGCGTGGGCGAATTTTGTTATCAATCTCCTCACATTTGT
GTTGTCTGGCCATGTGGTTGGGTCATGCTGGTATCTCTTTGGGTTACAGG
TGGGTCGAGGTTTAGCATAATCTTGCTCTATAATTTTGATAACTGATGGT
TGCATCTCAAATGTGTAATTTCTTTATGAACATTACATATGCTAAGTTTG
AAAATTATATGAAGCATTTCATTGTATTCTGTACAATATAAAGATTTTTG
TTTTTTTAATAAATCTTGATTAAACGCTAAGCTACCTGAACCACCTTCCT
AAAGGCTTTTAGAAGAGGTCACTATTTTGGTCCATTGAGTAATAACTTTT
TGTCTCCTCATTTTGACATCAACTGATTAACTGCATACATTTTCCATTAT
TCATTAGAGAACTTTTAATGCCTGAGGATATTATAGTGGATAGTTATCAC
AATTGTGCACTTTGCAGTGCTAAATATAACTAAAATAATAGTTCTGCTAT
GTTCCACCACTGTTTTTATCTTCTGTATTCTAGATCCCTTCAGCATTTAT
GATATTTGGAGCTAGTGCAACTTTTGGATACATTTACCTCTTCGAGTATA
TTGGCGAATTAGATTATCCTGATACATTGAAATTTCATATATTTCTTTGG
TAAAAAAGCATTACAAGATGATATGCCATGTCATTTCTAATGTTTGAGCT
TTATCAACTTCGGTATCTATGTTTTAGATTATTGTGGAAAGTATATTATC
CTGGAATATTGATATTACAATAACGTGGTATGCCACTATCATGTTTCACA
TGTTGACATAATCTCCTAGTATATTTAAGCACAAGTTTATTTTGGTCCGA
CATTTCACGAATAAAAGTTGTGTCACTTCTATGTGGTGTTTCATATATTT
TCTTATTAGGAGCATAAGTTGCTATCCTTACATTTCTTTTTTCCGCCCCT
ACAACTTGCAGAGGGTAAATGAATGTCTCAGAAATGCTTGTGATGAGCAT
TGGTGTATAAAATTTATAGACTGTGGGCAAGGAAATGAAAATGAGAGGTT
CAGAGATAATCTAGAGTCATGGAAAAATTGGACAAATAATGCCACAGCTA
GTGCTTGTTTTGGTGAAGGCAGTTTTCCATATGGAATTTACGTGCAAACA
GTCAATCTTACCACTGAATCTTCTCTAATTACGAGATACATATATTCATT
GTTCTGGGGTTTCCAGGTACCTTCTAAATTTCTTTAATCCTTTTGTTTTT
CTTCCATATACGTTGTTACCACTTGTGTGACATAAACACGGCCTTTGTTA
TAATGGTGGGTTCAGACATGTTTGGCATGACCTTTTAGTATGATGGATGA
TAACCTAATAATTAATATAGTGAAGTTATGTTAATTTTCTTCATATTCAA
AGTTTTAGAAGAGTTCCATCCTGATCAAGGATCCTCAATTGACAAAAAAT
ACATAGTCGATAAAGTGTGAAAATAGTTTCTATCATGCGCCTTCTGTCTG
TACGTGGTAGGCAGAATACAATGCATTATTAATGTTCGACCAATTTCTCT
CTGTTGATGCAATGATTGGCAGTAGTTCTCAAAAATTCTCAAAAGTTGTA
CAGATACATAAATTTTTGGGGGAACATACAAAAAGTTTGAACAACCTCTC
ACCCCCTTGCCCTCGGAAAAAAAACAACAAGAAATAGCTATGTTATGCGG
ACTCTTCATTTTGTCTCGAGTAACTGTGTCGGACACTCGGACATGGGTAT
GGACACTCCGGACTGTAATATATATATGAACTGTTCTAAGAGTCTTTGAT
TTATAAAGGTTCTGGAAAAAGTATGGAACTACAGAATTTAGATTGCCGTT
ATAGGTGATAAAACAAATGAATATGCACAAAAAGATGTCATTTTGCTATC
TTTTGAATATACCATGGACGAAAATATAGCCCTAAAATAGCCATGATTAT
ACCACTAATCCAAGACAGTAAATAGATACATATAATTGAACAAATTATCT
GATCCATATTCTGTTATTAAGTCCTTTTAAATGTGTTATAGTATCGATCT
CTTAAACTTCTAAATGATTCAGTGGTTCGACAATATGTTGGCATTATGTC
ATGTATAGTTATTGCATTGAATTCGTCATTGCAAGGTGCATTTTCGTGCA
TCAACAACTGAAAACAGTATAAACTAATTGTATTTATAGAGTACTTTTTT
CTATGTATGTATTCAATTAAATAACCATAGATTTGGTGTGTTTGTTATTG
AAGTAATTTACTATTTTTAACTTAGCAAATCAGTACTCTAGCTGGAAACC
TTACTCCAAGTTTCTATGTTGGGGAAGTTCTGTTCACCATGGCCATCATT
GGACTCGGTCTTTTGCTTTTTGCTCTTCTCATTGGTAATATGCAGAACTT
TCTACAAGCACTTGGTCGCAGGTAATTTTTAAATTTTTTTATTAGCATCG
ATTTTAGCAAAGGCCATATGAATATCTTGGATTACAACAGTCCTATGTAC
AGGCTCCAATTTCTTCCAATTGACTATAGAACTTTATGTACCTACCTTCC
TATTAGAGTATGCCTGTTCTAATTGTCTAATTTAGTAAAAAGAGAGCTTT
TTTACTTGGACTTTAGAGATCCCAAAAAACATATCCTAGTTCTCACTGCA
TCACCAGAACAGTTAAACTTTAGATATTCCCAACAGTGAAGGATAGAATG
ACCTGGTCAGAAAAGTATAGATATCCTAATTTTCTCTTTAATAATTAGAA
GTTCAAATTTTTCAGTAGTCTTAACACTTACAATAATTAAGGAAACTTTT
AGAAACCAGACAGATATTGACAAGAAGAGGTGAATTCCCTTTCCTATAAA
TTGAGCATCTATACTATTCGATACATGCAAGAACCCAGTCACTACTCTGA
AACATTGCACTCTATTACATATGTCCACATCCAAACATTGGTAATATATA
AAACTAGCTATAAGTACTCTCATGTGAGATATTTGAATGGAAAAACAGGT
AACCATGTTGATGGTAACTAAAGGGATAAATTATAGTATCAAACTAGCAA
TTTATGTAACTTTCACAGGACAGACTAACAGTGAAACCATCAGCTAGTGT
AATCTATTGTAGCACTTAATATAAATATTCATATTTTGTTGCAAACCTAT
TCTTTAGGAGACTAGAATTGTCTTTAAGGCGTCGAGATGTTGAGCAGTGG
ATGAGCCATAGGCGTCTGCCAGAGGAACTAAGAAGGTAAATTTCTGGTTT
CTTCCTTTTTTAAACTTGGACATTCTATTAATCATCCTTTCAGTAAATAT
CCAGTTATTAATTCCTCAATTGTCCATGTTCTTCTGTATCTTCTGTTTTC
AGATATTCTAAATGCGTTATGCTATCTAACTGTTCATTGAATATAACCTG
TATGAGAATTATGGTTTGCCACTTGAACTCTGTTTTAAATATAAGTTGAT
TTATATCAAATTAAGACTTACCTTCTTCGTTCTACATAATATTTCATTCT
GATTGTTTACTGACTCATCTTGATCCAGTGGCTTTCACACGATGATATTC
TTTAGCAAAAACTAATATACTTCGTCAAAAGCATCAGCATATGTATAGTC
AGTTTACAATGTATATTTTTATTACAACTTTGTCAAACAATTAAGTTAAA
ACCTGATGTATCACGCACATTATATGTATTCAAGTATAAATATATAAAAA
GCATTTTCTATTTTTCACATGTTTATTGCTAGTTTTGTAGCAGTTTCACA
TGAAGCCTGACGAGGCAATTAACCTTGTACAACTAACATTTTTAAATAAC
ATTTGATGTGGCTGAATTATGAATTATGGACATGCTGTTTTGGTTGCTCT
TAGAACTCTAAATGGATGATTGCTAGAACTACATTACTTTGTAAATCTAG
TGTGTTTGAACAATGGGTCCTTTCTCCCTTTCCCTCGTATTGACATCTTA
CAAACACACACTTTTTCCCCATGCAATGTATAAATTAGCTCCGTATGAGA
TGACATTTTTGACTTTTTCTTTTTAAACTCAATATGCAGTATTTGTAATT
TTGTATTTTTGATTTTGGCTTTAATTAAAGTCGACTTGTTTGAGAGCATG
CGCAGGCAGATCCGTGAATCGGAACGTTATAATTGGGCTGCCACTAGAGG
GGTTGATGAAAGTATGCTGTTGGAGAATTTACCTGAAGATCTTCAAAGGG
ATATACGGCGACATCTCTTTAAATTTGTAAACAAAGTGAGCTTGAATACC
TTACTGCTATCTTATGCTATCTTTTGGTTTTGATTGCTCTCTTTGCACCA
GTTGGCCTCCTTAGCACACCATAGAATTTTTTAAAGATATATTAAACTTC
TGTATTTCCAGGTTCGAATCTTTTCTCTGATGGATGAACCAGTCTTAGAT
GCTATGCGTGAGAGACTGAAACAAAAAACATATATCAAAGGAAGCAGAAT
TTTAGTTCCCGGAGATCTGGTTGATAAGATGGTATTTATTGTTCGAGGCA
AGCTTGAGAGCGTAGGAGAAGATAAAAATATAGTTCCTTTGTCTGAAGGG
GATGTTTGTGGAGAAGATCTTCTTACCTGGTGCCTTGAGCATTCTTCTGT
AAACAAAGGTGCTAATGCATTTTCTGAATTTTCTATTGAACTTCTTTTGT
TGGCATTAATTATCTTGAACCCAGCTGCATGTTACCATTGCTTCAGACAG
ATTACTATCTATTAAAAAAACAATTATATTTAAGATATTTTTAAAATGTA
ATCACAGATGGGATTACATCAGCTAGGTAACTTCGTTGGTTGTACCCTTT
ATTCCATAGCTTATCGCCCATAGGCTCTCTCATTTTTCTTATAGTTAATC
TCAGCCCTCTATTGTCGGAGGCAGGATAGAGTTGCACACTAAACTCCTCT
CATTTCTTCCGGACTGCAACATATAAATTCAGCAGATATATTCGATTAAA
CTACTTCTATACTGATCCTAAATGAAGTCACAGTTCTTATCTCTCCCTTC
TGAATTACGACAAGGTTACCTAAACATCTGGGTGGATAGTCATATAATTT
TAGTGCTCTGTATAGTTTTGTAGCTTTCTTAATTACATTTACTTTTTTTG
GATTTGGTCGAACTTAAGTACAATCGTTGTTCATTTTTAAGATTTAGCGT
AAATTTTAAAGGTTTCACTTAAATTATTATTGTTCTGAATTTTTTTTCCT
TTTAATATGTTAGAAGAAGTAACAGTATTAGCAAAATTATACATCTTATA
TCAGAACAAGATCGTTTCTCTGCAGATGGAAAAAGAATCAGGAGTCCAGG
ACACAAGCTGCTTAGTAATAGGATGGCAAGATGCTTAACAAATGTAGAAG
CTTTTATACTTCGAGCTGCAGATCTCGAAGAAGTTACTAGTCTTTTCTCT
AGGTTCCTGAGAAATCCACGCGTTCAAGGTGCACTCAGGTAAAATCATGT
CGCTCATTAAACTGTTGTAATCAGATATATGACGTAATTGACTCCCAGTC
TACCCATCAATTTACTACTGAATCATGCATCCATAATCTACTAAATTAAC
TGGTATACTAGTATTGAGGTCGCAACATGTGGATTTGATAGGGTTTGTCT
TGAATAATTTGGGTAATGGGAACTTGTGTGGTTACGACGGTAATGCAAGT
TTTACCCGGGTGGAACACCAAATCCCCTTGCGACTCAGCTTGTCTTCCTA
AGATATACGAAAAATACCATATATAATAATTAATTCAAATAATGAAAGAA
GTTTATCACATTTCATATCATAGTATATTCTGCTACTCGCAGGTATGAAT
CTCCTTACTGGCGGTGTCTTGCAGCAACTCGGATTCAAGTTGCATGGAGG
TATAGGAAAAAGCGGTTGAATCGTGCAACAACTGTTAGTTCTACATATAA
CCATTCCCCAGGAAACTAATGATAGTCTATACGCATCATACATGATACAT
GCATTATAGTTTAGGTCATCTCGAGCTTGTTTTGTGCGTTAAGCCAATTT
ATACTATCTATAATATGGGTATAATCTAAATTGCCAACTGAGTACCTCAG
CTAT

Sequence Length:

10154

Sequence Checksum:

55c99d4d094b4283e8ce02504761ccb0

View location in JBrowse:

DCARv2_Chr6:211226..221379+

Cds:

>DCAR_023261cds ATGGATGCTTCTGACAAAGCTCAGGAATATATGAAAACGAATGGAAATGA GAAGCCTAAGTCTAGAAGCTCCACAAATGGAATGCGGAGTGCATCAATAT CCATTCCGATGTATTCTCTGGATTGCAGTGATACAGAAAATAGTTTCTCA GGTCGTAGTGGTCCGTTGTGTACTGAAAGAAAAATATCATACACGCAAAT GAGTGGTCCTCTTTATGCAAACCTTAAAAATGACAACTGTTTTCAAGATA CACAAGGTGCAATCGGGAGCAGAGCAACTGAGGCAACATTGGAGAAGTAC CCTTCGGTCAATGGATTGGTTCAAATTGATTGGCCACATAACAATCATGT GGTAACAAATGAAAATTTATTAAGTTCTGGTCAACTCGGAATGTGTAATG ACCCGTATTGCACAACATGCCCCACTTACTTTGAAGGGCAGCGAAAGAAC AAGAAAGTATCCAGTATATCTGATCAGAAGAAGCTTCCTTATATCAATTA CCAGCAGTTTCCTATCCCTACCATCAAACAGGGAGATGCAAAAGGCTGGG CATGGAGAATGTTTTTTTCTCTGTATCGATGTATTCCGGGAGTCATGAAT CCACATGCTAAAATCGTTCAATACTGGAATAAGTTCTTTGTCATCTCGTG CTTATTTGCGGTTTTTCTAGACCCACTCTTCTTCTTTTTGCTATCTGTAA AGAAGGAACACAAATGCATAGTATTTAACGAGACCATGACAAAAGTTCTT ATCACTCTGAGAAGCCTGACTGATTTCATTTACTTCTTGCATGTGCTTCT TCAGTTTAGACTGGCGTATGTTGCTCCTGAATCAAGAGTTGTGGGTTCTG GTGATCTAGTTGACCGTCCAAGGAAAATAGCTCTCAATTATCTCTACGGG CACTTTCTTATTGATTTCTTTGTAGTGCTACCTCTTCCCCAAATAATTAT ATGGCTGGTACTCAAAAAGTTTAAAGGATCTTCTGGTGCAAATTATGCAA AAAACTTCTTGCGAGCAGCAATTCTTGTTCAGTATATTCCGAGGTTGTAT AGGATTCTTCCTATGCTTGCTGGTCAGACGGCAAGCGGCTTTATCTTCGA GTCAGCGTGGGCGAATTTTGTTATCAATCTCCTCACATTTGTGTTGTCTG GCCATGTGGTTGGGTCATGCTGGTATCTCTTTGGGTTACAGAGGGTAAAT GAATGTCTCAGAAATGCTTGTGATGAGCATTGGTGTATAAAATTTATAGA CTGTGGGCAAGGAAATGAAAATGAGAGGTTCAGAGATAATCTAGAGTCAT GGAAAAATTGGACAAATAATGCCACAGCTAGTGCTTGTTTTGGTGAAGGC AGTTTTCCATATGGAATTTACGTGCAAACAGTCAATCTTACCACTGAATC TTCTCTAATTACGAGATACATATATTCATTGTTCTGGGGTTTCCAGCAAA TCAGTACTCTAGCTGGAAACCTTACTCCAAGTTTCTATGTTGGGGAAGTT CTGTTCACCATGGCCATCATTGGACTCGGTCTTTTGCTTTTTGCTCTTCT CATTGGTAATATGCAGAACTTTCTACAAGCACTTGGTCGCAGGAGACTAG AATTGTCTTTAAGGCGTCGAGATGTTGAGCAGTGGATGAGCCATAGGCGT CTGCCAGAGGAACTAAGAAGGCAGATCCGTGAATCGGAACGTTATAATTG GGCTGCCACTAGAGGGGTTGATGAAAGTATGCTGTTGGAGAATTTACCTG AAGATCTTCAAAGGGATATACGGCGACATCTCTTTAAATTTGTAAACAAA GTTCGAATCTTTTCTCTGATGGATGAACCAGTCTTAGATGCTATGCGTGA GAGACTGAAACAAAAAACATATATCAAAGGAAGCAGAATTTTAGTTCCCG GAGATCTGGTTGATAAGATGGTATTTATTGTTCGAGGCAAGCTTGAGAGC GTAGGAGAAGATAAAAATATAGTTCCTTTGTCTGAAGGGGATGTTTGTGG AGAAGATCTTCTTACCTGGTGCCTTGAGCATTCTTCTGTAAACAAAGATG GAAAAAGAATCAGGAGTCCAGGACACAAGCTGCTTAGTAATAGGATGGCA AGATGCTTAACAAATGTAGAAGCTTTTATACTTCGAGCTGCAGATCTCGA AGAAGTTACTAGTCTTTTCTCTAGGTTCCTGAGAAATCCACGCGTTCAAG GTGCACTCAGGTATGAATCTCCTTACTGGCGGTGTCTTGCAGCAACTCGG ATTCAAGTTGCATGGAGGTATAGGAAAAAGCGGTTGAATCGTGCAACAAC TGTTAGTTCTACATATAACCATTCCCCAGGAAACTAA

Pep:

>DCAR_023261pep MDASDKAQEYMKTNGNEKPKSRSSTNGMRSASISIPMYSLDCSDTENSFS GRSGPLCTERKISYTQMSGPLYANLKNDNCFQDTQGAIGSRATEATLEKY PSVNGLVQIDWPHNNHVVTNENLLSSGQLGMCNDPYCTTCPTYFEGQRKN KKVSSISDQKKLPYINYQQFPIPTIKQGDAKGWAWRMFFSLYRCIPGVMN PHAKIVQYWNKFFVISCLFAVFLDPLFFFLLSVKKEHKCIVFNETMTKVL ITLRSLTDFIYFLHVLLQFRLAYVAPESRVVGSGDLVDRPRKIALNYLYG HFLIDFFVVLPLPQIIIWLVLKKFKGSSGANYAKNFLRAAILVQYIPRLY RILPMLAGQTASGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVN ECLRNACDEHWCIKFIDCGQGNENERFRDNLESWKNWTNNATASACFGEG SFPYGIYVQTVNLTTESSLITRYIYSLFWGFQQISTLAGNLTPSFYVGEV LFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLELSLRRRDVEQWMSHRR LPEELRRQIRESERYNWAATRGVDESMLLENLPEDLQRDIRRHLFKFVNK VRIFSLMDEPVLDAMRERLKQKTYIKGSRILVPGDLVDKMVFIVRGKLES VGEDKNIVPLSEGDVCGEDLLTWCLEHSSVNKDGKRIRSPGHKLLSNRMA RCLTNVEAFILRAADLEEVTSLFSRFLRNPRVQGALRYESPYWRCLAATR IQVAWRYRKKRLNRATTVSSTYNHSPGN*