DCAR_022939

Resource Type: 
Gene
Name: 
DCAR_022939
Identifier: 
DCAR_022939.gene
Locus Tag: 
DCAR_022939
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 3 relationships.
Relationships
The mRNA, DCAR_022939, is a part of gene, DCAR_022939.
The genetic_marker, MK011267 6_3480104, is located in gene, DCAR_022939.
The genetic_marker, MK004147 K1591, is located in gene, DCAR_022939.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_022939DCAR_022939.mRNAmRNADCARv2_Chr6:3479970..3492846
Sequence: 
ATGGCGGCATCCAGCGAATCGATCGCTCCTTGTTTATCGGTTTCTGAAGA
CAATGCTGCAGCGACAAAGTCGTCGGCGTCGTCGTCTCCTTGGATGAAAC
CTGTAAACGGCGTCGTGGAGCCTGTCATGGGGAGAGACTCGTGGCCTACC
ATTACTGAGTCCACTCGCTATCCGCTGCTCGTTAAGTCTTCTTCTGATCC
ACCCGATGCTGCAGCAGCAGCGGCGTCGTCGCTTTCTGTTTCCGTTTCTA
AGGTTATACAGATTTGTTATTTGTGTTTACAATAATTATATTAATGTGTT
ATTTTTGAGATTGATTTTTAAACTTTTAATGCATCCTTCCTCAAATTTCA
CAATTCTGGCACTTTGCTTTGATCATTCTTGTTTGGAGCTAAGTTAGCAT
CTCTTATGTATCATATTTTCCTTCTGTGATTCGAGATTAAGAATTCGAGA
TTAACTTGTGGATAAGTTGGACCATGTTTTTTAGCTCTTGTTCTAACTTG
ATTACTAAATTATAAATTGAAATTAATTGCGGCTCAACCCTTTTAAAATG
TTGCCAACTCTCATGGCGAAGAAGCCTGCATTAGATGTTATATGTGTACT
ATGCCTCTGTGTCAATATTATCTGCTATGCTTATCCATGTTGCTGTTGTT
TGTAAATGATATATTGAAGATTGTTTTATGTTTTTAGTTTTACGTGTAAA
ATTGTGTTTTTTCCGCAAAGTTTAGGCTTGTATTCGCATTTAAAATTTTC
TTTATTGTTAATACAGGGATCTGTCAAATCAAATGCGCATCAAAAAGCTG
ACACCAATGGGAGCCCTAATTCGTCTAATCACAATGCACACCCACATCCT
GTGCGACAAAGGCCAAGCAAGAGAGGTGGTGGTGCAGCTGGTGGATCAGT
ACAGAGTGGCTTTAGTCGACCAATACCCCCATCTCCAACACCACCCCCAT
TCCCAATACCTTTTGGTTTGTTACCACCAATGATGGATCTACAAGTTAGA
GAGCCTCCATTTAAGGGCAATACCTGGGAAAGCAGACCAGTCGGAGGGGT
TGGGTCTCAGTCAAACAATGGAAATGATCACTCATCACAACGGCATCCCT
CCAGGAGAGGAAACTATGGCTCCCGTCCCCGTGGAGATGGAATGCATTAT
AATGGTCATGGGGGAAGGCGTGATCAAGACCGTAACTGGAATCCTCCCCG
GAATTCTACTGCAAGGGATGTTCATATGCATCAAATGGCTCCTCCCCCAC
CTCCCCCTCCTCGCTTTATGAGACCAGGACTCCCGGGTTCTACGCCATTC
ATTCCACTCCCACATGTGTATGGGAATCCCATGCCTTTTGGTAAGTTACA
TATGTGGTAAGCTAAACATATGTTCTCCTGAATATAGAATTAATATTATC
AATTTGATGCAGAATTTGTCCGGCCCATTCTGTACGGTCCACCATTGCCA
CCAGAGTCGTTAAGGGGCGTTCCGTTGATTCCTTCACAGGTTCCCCCACC
GGTGGTTTTTCCTTTTGTTGATCCTAATCTACCTTCTCTATTAGTCAATC
AGATCGACTATTATTTCAGGTAACTAAAAGTAGTTTCTATTAGTACCTTC
TCTTGTTGGTATGGTTTAGCTAGCAATATATGGATTGATATCTTTTTTTT
CCTCGCTGTCAGCTGACTTTTGCCTTCTCTTTTTCCTCATAAACTGTTTG
TTCCAGTGATGATAATCTGGTGAAAGACGAATTCTTAAGGTCAAAAATGG
ATGAACAAGGATGGGTGAATATTAGTGTAATAGCCAACTTTCGACGGGTA
AGTAATATTTATTTATTTAGCCAATTCTTTTATACTTGATGGGTAACAGA
AATGGGAGTTCTAGCTTTGTATGTGGTTTTTCTCTATACGCTGTTCTTGT
ATACAGTATTTATAAGGACTCCCCCTCCTGTCGCTCATATTATCCGGCTA
TGTTTTTTACTTTGGGTTGTCCCAAACTTATGCTTGAAATTTCTTTAATA
TCCTATCTTCCAAATACAATCAAGAGTTTTAATACCTTATTAAAATTTCT
AAAGTATAGTACATGCCATGTTTCACTCTCTCCCTTCTGGGTGGTACACA
TAAAAATACTATTGAGTTTTAATTACAAATGACAAATTTAAATGAGTGTG
AAATAGCTCAAAGGCTAAAACTGATCATCTTTATAAATGCGTGCACGAAA
GTCGAACAAGAAATATAGTATGGGCTGGAAGGAGTATTATATATACTCCC
TTCTTGTTGATAAATTTAGCCACAAGAGAGTAGGGTATTGGGAACATAGT
TGGTCGGGTTATTTACTTATTCAATCTGCTAATTAATTTACTTATACTTC
CTAGGGAATAAAGTTTAAGGTAATTTAGAAACGTTGATATGATGTTTGCA
AGTTTTGAAATTCTGGTTAGAGTTTCCATTCTATGAGGTTGCAATATGTT
TTGTGTAAACTATATGAGCTGATAGATTCTAGTTTACTGCTTAATAGATT
TTCCTAAAATTAATTAAGAACATGCTAAGATAGTCGTTTTGTTTATCTCG
TCTGCGGAGCAGCAAATTTTTAAACTATGGTTTTGGCACGGTCACTCTAT
GGATATAACTTTAATTTTTCTTTATAAATAAAGCGTCTTTTGCTGTAGGT
GCTTATCTGATACACAAATCTTATAAATTAGCCGTCTCATTTTTATCATT
TATATGTTTTACAAGCTGTGATACGTGAATAACTACAAAAACCAAAATAA
CTCTCTGCAAGACGACTTTCCAGGAATGAATTAGGCTTAGTTTGTGGATC
ACAGGAGACTTGATGACCCTTTAACCTTTTTTTTTTTTTTGTCACAGATG
ACCCTTTAACCTTGTTCTGCATGAATTATTGAATATAAAAAAGGGTTCAG
TTAAATTCTGGTACATGTGTAGTTAGCTCGTTTCATTTCAGTAGATTTCT
ATATTAGATAAACAAATATCTGATTCTTTAAAGTTATATAAAAAATGACC
AAGTTTGGGTTCTTGGGTTGTCTGGAGCCTTCCCGGAGCTTTGGTGAGGC
TCTAGTGGGCCTGTAGTGGATAGAGTATGGGTGGGGGTGGACCCTAGGTA
GGTGATGTGTCATATAGGGGGTGGGTGATGTCATATAGGAGGTGGATGAT
GTCATATAGGGGTAGTTTCTCTTGGTTTTTAGTTTAGTATTTATTTTAGT
GGTTTGTATTTGAGCAATTGCCTAAATATATATGTGTGTGTGTGTGTGTG
TGTGTATTTATATATTGCTTCATCTAAGGTATTTACCAACTGTACCTAGT
TACTAATAATATTCTGCAGAATTGAAATTGATAATATTCACAGACCTGAA
GCTTTTTTAGGCATTTGTTCTGCTAATGATGTTAATACATTATTAAAAAT
GTGGGGCATGGCTCCCAAATTTATTGCATTTAGTAGTTCTTTGGACGAGT
TTTTAAACATACCCTATATTGTTTTTTGTTATTGGTTAGAAATGACCTTT
TCTCTTATTATTTCAACCTTTTCAGTTCAGATTAGAAAACCTAAAGATTC
CGTGTTGAAATTTTAAAGCTCTGTAGATTGGACTGTTCTGTTATGTTATA
TTTTTGTGCTGCCTTTTGAATCGCTGTTGTTTCATGCATGCTATATGTTT
TAAATTATTATTTCTGTAGTATTAATATAGTGAACATGCAAGATTTTTGC
AATGTATAGACTAGAGTCTTCTGCTAGACCATCTCCCAACCAACTTTAAA
TGTGTACTATTAAATTAGTATGGAAATAAAACCAACTCCAGCCCAAATAA
CCTTAGAGTTTCTTAAAATTCCAATCAAACATCTGTACTCCTTAACTAAA
GCAATGTCATTCCTTCTGTATTCCAGTAACAAAAATCACATTTGTACCAT
AAACAATAGATATTCTTATGGTACAATGTACAAAAAGGTTCCTTTTGGTG
TAAAATCTAGTGTAGATGGGTTGGAACTTTATTTTGATATCATGTAACTG
ATACACTAATATAGTTTCGGTAATGCCCTCAAAATTTTCTTTTGTTATAT
TTTCCTTTTATTTGGATTTGTTGGATACAATGTTTTTCTTTGTTGGTAAT
GTTTCAGTTCATGAGTTAATTTTATTACATATATACATCTTTCTATGTGA
TTTTGTAGTGTAAAAACTAAAAACAGGGCGGGTAGCTTCATGATGGTATT
TTAGTTTTGGGTCTAGGTCCTTGGCATACGTATGCCAGGACCTGTTAACC
AATATTCAGCTTCCTGGCTGTTGGATTAATATCCAGCGACCAATATTAAA
ATTAAAATTTAAAACATCCAGTGCTTTTTAACCGTTGGACGGGGACAGGC
CTAGTCTAGCGCTTAAAAAGCACTGGACGTAGGTTATAATTCTGGCCGCT
GGATATTCATCCAACGGCTAGGAAACTAGCTGTTGGTTATGGGGTCCCTG
GCATATGTATGCCAGAGACCTGGACCCTTTAGTTTTTCTTCTTCCCATTT
GCATTTGCTATATTTTGCAATTTAAAATGTTGTTTTGAAGCGATGTTCTT
TCGTCACATTAGTCTTCACATCATTCTAAGCTGAACAAGGGATAAAAATA
AGTATTTTAAGGGCTTGCTCCTGAGTTTTTTAAAGAAGGAAAGTAAAAGA
ATGCAAAAGGAAGTAAATGAATGTCTGGCTTGCTTTCACTTTCATCCCAA
TTTTGGAGTGAAAGTTTTGGAGTGAAATTATGTTCAAATTGCATTCCTTT
CCACTTGCTTTCATCCTTTCAAAAAACTTGGGAGCACGACTAGGAGTATA
AGTTATACTACTTTACCTCCTCTTCACTAGCTTTCCTCCTTATTTAAAAC
TCGGGAGCAGGGTGGAAGTGTTTCCAACATATATACCAGAATTATATGAA
GTTGTGCATGTTGAAGATCTTTCAAGGATTATGGTACAAAATGAAATTTG
CATTTCGACATGTGCATGCTTCAATGAGAATATATAGATTAGTTTTGAAA
ATATTTTCTTGCATCTAGATAAGGCAGGATTCCTCCTTGGTTGTCAAGTG
GCTAAGTCGAGGCGATTCGGTGGACCTCTGGCTAGTCGATTTGTTGACTA
GTCGTGGAATAGTCTGACAAAAAATATGATTAAGTATTATATATAGAATA
ATTTAAGCCTCTAAATTCCATGTTTACAACATCTACCAAAATATTTTATT
TCAGATCCAAGGACGAGTGACGACTTGAAGAAAGCATAGAAAAAAGAAAA
GAGAAAACGTCTGCTGAATTGTAAATTGTAATTATGTAACAACTAACAAG
TAATTAACAATGCAACTTGTCAAATTATAAACATAATTATTTATGCAATA
TTAATTAAAAAAAAAAGAGAGGAAGAGATAGCAGTTTTAATCCTTAGAAA
CATAGCAGGATATCAAGTAAAAACATAGCAGGATGTCATGAACTATGCAG
AAAACTGAGCAAAAAACAAAACAGAGGGGTAGTTCTGCAGAATGAAATTT
GAAAGATCTAGGATCGTTGAAGAAGCTTGTACTGATGAATTGGTAGCAAT
TTTTGTTCTTGCTCATTGCTTTATTTGGAAATTAGGGCTGGGTAATATTT
TATTTTTGATAAAATCGGGTTTGGGTCCAACTAGTCGATGACCCGGGTTA
ACTAGTCGACCTGACTAGTCGCCTGAAAGATGGGGTTTTCGCGGCTGACG
TAATTAGTTGACTACCCTTCCTCGACGGGGGAGGGTATGGGTGACTCAAT
TAATTTTCGGGAAAATCCCTCACAAGAGATGATCTGAATAACGTAATATA
ATTCTCAATTACAATGATTAAACTCCTATTATATAATAATCTACTTTTCA
AAATAAACTTATTCTTTAAGTTAATCAGTATTATTATAACTAAGCCTATT
CTAAGATATACTAATTGTAATAAATTAGCTCCTGGAGCTTATTTTGTTGC
TCAAACACTCTCTTTGGGCTTTTTGAGCCCCTGTTTAGGAGGATCAGTTC
TTCCCTGCTGAAAGCAAGACAGAGCACCAAAAATTGTTGCACAAATGGCA
TGTGAGGACGACGAGCACAAGCAAGAGTATATTTGTGATCACTCTTGACA
AATTTTACATGTATTGCCACGTCCGATTTGATGAGCATCTCGATCATCAA
AGCAATGTGACCTCTCACAGCTTCCATGTTTGACATAAAAAAAATAAATT
AGGATTTCATTTTTTCACCAGATTGACTCTTTTTGAAGGGTGGTTTTGTT
TATAGTAGGGGGACACTTAAACAGTTTATTCCTTGACATTCAAAATTTGT
TCTAGTGTTACTGCCAGCAACATCATGTGCTTAGATGGAGGCACAGTTGT
ATGTGCTATTAACAAAATCTAACAGTTTGTTGTCCTTGAATAGCGTCTGA
GAAAACGTGTCCCTCCTTTTCAAATCATCAACTGAACATGCACTCTGATT
AACATCCTTCATAAGAAAGCATCTGCTAGCTATTTACTATTGGGGTTAAG
TCATATAGAGGGCGGGTGATAGGGTTGGATGATGTCATATTGGGGTGGTT
TGTCTTGGTGTGTGTTTTAGTTTTTATATTAGTGGTCTGTATTTGAGCAA
TTGCTTGTATATATATAGGGTTTTACTCAACTATAAATCTACTTAAGATA
CAAACTACAAACTACCTATATATATATGTATGTACACACACACACAGGCC
ATTACTCAAAAAAGAACACCCTTAAAAGAAGAACAAAGAAGACCACTTTA
GAATCTAATATAGAATCTCATCTAAAATTTGAATTAAATTCTAATTTTAA
GCTAATTAACATTTTATTATAAATAATAATAGTATCTAATATGTTTTAAA
AATAAATATGGATTAAAAATAACATCTTTCTATGCAAAATTAAACGTGCA
AAAAATACATATATTATTCTAATTTGGATTCTATAATATTTCATATTAAT
AATTTGGATGAGATTTTTATAGGTGTTTAATTATGTAATTATAATCTTAA
CAAATCATTTTTTTATGAAAAATACAGTGATATTATAGTGTTCTTTTAAA
GTCATCAGTGTTTATATATATATATATATATATATAGTGATCAAATACAA
ACCAATCTTTTAAACAAGCTAAAAACAAGTTCAATTTAGTGATATTCACT
TTAAAAAATAGTGAATTGTGTTAAAAATTGGTGATTTCTTTTAGGAAGGT
AGTGCTATCTATGTAGTGCATTTTACCACCTGATCGCCGTCACCTCCTGG
CTCCTGCATTTGATGGCAGTCTTCTCGAGTGCTTATCGTTTTCATCTTCT
GGAAAACTGTTTAGAAGGTGTTTAAAACGAAACTTTAGAGCGATTGTTCT
CTATAACACGAGGACAACTAGATACAGACTGATTCTTCTAAGTCGGCCAT
TGTTCTTCTAGGGTGCCGTCTCCTACTTTGTGATCTGTCCAAAATTTATA
GCTAGATTGGCGCCACAAATACAACGAGGTCGGGTCTGTGGAGGGAGCAT
TAGCATCAGAGAATGAAGCGTCTACATCGACAATGATTTCTCTGTGGTAA
AACTGGAGGGGGAGGAGGAAGGGGAGGATGGGATTTGGCGGTGGTGGAGA
TAGTGGAGGTAGATAATAATAATAATATAACTAAACTTACTCTACAATAT
TCTGATTAATGGGCTTCTAAAGCCTATTATTTCCTCTGAAATACTTTCTT
TGGGATTTTTGACTTGTTGTCCTGCATCACTTCCTCCTTTTAATTAGTTA
AGTTGTTCAATGACAATTTTGCAGTATATGAAGTATTATAGGTAGACTGA
ATTAACTGTTTGAGTATCTAGTCATTTATCTAGAACATTGTACATGTTAC
TTCCATTGAAATTGAAAACATTCCAGATAAGTGTAATCAAGTTTCTCTTC
TGTGTATGGGCCTGGGGTGGTGTTTAGATTTATCCTCCAGTAAATGTTTT
TACTTATTTATATTTATATCTTCCAACTACAAACCATGGATTATATTGTT
TCTGCCTTTTAGCTTTTGATCTTTTATCAAGTATTTTTTGTGTTAAAGTT
TACCATGGTGTGCAGGTTCTGAGTTTGACAAGCAATGTCCAGCTGATCTT
GGATGCTTTGGGAACATCAACAGTTGTTGAAGTACAGGTAAAATTTTACA
AAGCATTATGAGATTGAATTTTCTTGACCTTATTATGGTCAGATAATATT
CTATTGTTGTGACCGTACTTTCTTATGTGTTTATTCGGAAAGTGTTGTTA
GATATGCTTGAAAACATGCTATGTTGGACGTGAGCTGCCAAAATATGGAT
ATGGTTGGTTATGGTTTAAGTTATTTGGTTTTGGTTTGATTTGAGAACTA
AACCCATTGCGAACTCATATTCTTTTGTATGTGGTTTTGAAATTAGCTTG
GTGTCCATGGATTTGGATTGAAATATGGATAATTTCCTCATAAATAAAAG
TCTTGTGACATTTAATAATTAATATCCAGCTCCAGTCATTCTTTCAATCA
CCTGACAAGAATTAAAAAAATGTAAAACTATACTAAATACGTTTATAACA
AGTGAGTAGTGGGTAAAATATAATCCTTATATGAGAGCATCTCCAATGGC
TCTTCAAACAACTTCTTAACTCTAAACTTAAAGAGGATGCGAAAATTAGA
GCTCCTAGTGGCTCTTTAAAAATTTAAAAGCTCTCTCCTCTCATTTAAAA
AGCAATCGGGTGCTCAATATACACTTCTATTTCTATTCACTTTTTCTCCT
ATCCTCTCTCCAACTTTTCTCTCAAATAATAATAAAATATGAATAAAGAG
CAGATATAAGAGTAATGTTGGATTTGTCACAATCTTCAATGTTTTAACTT
CATAGGAGCCATATGTTATATTACTTTTTTAAAAATGATTTAAGAGCACC
ATTGGAGATGTTCCGACTACTTTTATCTTACAAAAAAGGAGAAATTAAAT
AAAGAAAAAAGGAAAGGAAAACTTATCTAACATACCAGTGAAAAAGAAGG
TTGCACAAAACGGTTGGGCCACCCAAAATAAATTGTGTACCCAAACTGTT
TAGAGATACACTACCATGCACTGTGTAACTTTTTTTTTTCTTCTCTGAAA
AGACATATTTGGATCTTACAGCTGTATGTATAATCTTCTTGGAGTTTATA
TTTGGATCTTACATATGAAGCATAGTGCAGTTTAGATCCTCCCCTATTAC
TAACTCATGTTCGTATGTTATTTGAAAACACATTAATAATGCATACCAGT
TAATAGCACAACCACTATAGTCTATATAAGCCAATTCGGTTACTGCAACC
TATGGTTCCGGTGTGCAAATATACTGTTAGGAAAAATAATAAACACAATA
ATTATTAAATCAGTTACAAAATGAGAATGATTAGTTGTGCATCAATTAGG
ATTTGAAAGGGAGTAATTGGTGGAATATTATTATTCTAGCTTTTATTTAG
GGATTATGATACGATGTTAGGGGTTATAAATAGAAAAATCATTGATATGT
TGAGAGGAGGAAGAAATAAGAGTGAAGTTTGTAATTGGAGAAGTGGGTGG
TCTCTCGAATACTACCTAAGATTGTGTTGCAAGAGTGTCAATAATTTGAT
TGTAGTCGGATTTTCTTGTACTCTTTACATTTGTATTATATCAGTTGCTA
TCATTGACATCAGTGCATATACGTACTTGGGCCATAGGAAGTGTGAAACA
AATTGAAAATCGAATCGATGAGCTAGAGAAGAAAATGGAAGCAAATAAGC
AACGCAAGTAGAACTTCAAAACTTGGATTTTGATTTAATCAAAGAAAGTA
CGGCTGCCATACTTGAAAAAATATATAGCCTTGAAAGCGGGGCTACTGGA
TCATCGAATCCGACCGACCCAACATGTGTCATCGTAAGTGGCAATTATGG
TTATCAAAATGTGCCGCTTAAGACAGAAGTGCACCTATTGAGCTTTGCTT
TTTCGAAGCGCATAGCAAATACAAAAGCCCCACTTTATGGACGCTTAATG
TTGAAGCCCAAAGTGCAAAAAAGCTATAAAAAGCACGCTTTTGTGTAAAT
GGTTGTTTCAACAAGGGAGACTCTAGTAGCCGCAAAGACAATGAACGCCT
TTTTGAATTTAGGGTCACAACTACTTGAAACTACTTGAATTACCCGTGTA
TGAAGGTTTGAACGCCAGATGTTGTGGAACACTATTTTGAACTCAATAAT
CTCTCACTAGCAGAAAAGATCAGGTCGAGCGTAATATGTTCGGAAGGTGA
AGAGCTTTATCTTGGTACTATTTTGAGGAAAGTCGAAGACATTTTGGCAA
TTGGAGAAAATACGAATCAATTGATAGAGCATTTTCAACCCACTCAAGAG
GGTGCTTTTCATAACCAATTATTTTTTCTCTAGCATAACACTAATTTACG
AGAATATCGTTGCCAATTTTAGTTATTATCTGCTTCCATAAGTGATTTAA
TGGAATCAATTTCAGGATGTGTATTTAGAAATGGACTTCAAACTTATATA
CAGGCTGAACTGAGACTAATTGAGCTCATGGGCTACCAAAGATGATGCGC
ATTGCACAACAAATTGAAGATAAAAATATGGCCATGCCACTTTATCAAGG
TGGAAACAATTTTTTAAAGGAATAGTCCATCCCATCCCATGCGGGACTTA
ATTTTCAAAAATGTGGCACGATAACCTTTTATTATGCCATCCTCTAACTC
TCCAATTCAGACCCACATATTAGTGTTTGTCAGAAAAGCCGAAATGCCGG
AAAAAAGAAAAAAAATATTGGTCTTTGCTTTCGTTGCGATGAAAAATTTG
GGTCACGTTACATTGCTACAAGAAGGAATTACAAGTCCTTTAGGTGCAGT
GAGAATAGCTTGAGGTTAATGAGTCCAATGAGAATTATGAGGTGCAAATC
ACATAAGGTCATTATGGGGGACTCTTGTCATTTGAACCTTGAGGATAAAG
TTTGAGTGTAGGCAACGAGTAATAGTAGGAAACATAATAAACTCAATTAT
TATTTAATTAGTTACAAATGTGAATGATAAGTTGTGCATCAGTTAAAATT
TGAAAAGGGAGTAATTCGTGGAATATTATTAGTTAAGCTAGTTAGGGATT
ATGATTTGATGCTAGGATTATGAATAGGAAAGTGATTGATATATTGAAGG
GAGGTAGAAATAAGAGTGAAGTATATGAGTGGAGATTGGATGGTCTCTCG
AATATCACCTAAGGTTGTGTTGCAAAAGTGTCAATAATTTGGTTGTGGTC
AGATTGTCTTGTACTCTTATATCTGTGTATATCACTTCCTATCATATACT
AAAGTTGATGTATAATGAGATGACGAAGGACATTATACTTGAAGTTATAT
ATTCTACTCCCATTTCATGCTATCAATTATACTTAAATCATATATATTGT
GATACTTGACGGAATATTAAGTCAAGGGTGTAATAATGGTCAAATTTAAT
GGCATTGTGCAAAACATTTTTGGTACTTGGTGATGGTAACTTCTTGATTT
GTGAAGGCCAATTCTCGGCTCCCTTAACTGTAATGAACCGGTTCTAACTT
CAAATATTGCAGCATTGTTGTGAAACTCAATGGTGTCTACAAGGAAAAAT
GGTGTTGGACACTAAGCAGCGGAAATGATAGATCGATATGCACGTGAATC
TACTTTTTATTTTTATCCCCTCCCTTTTTTGATCCAATTATAACCGGTGG
CAACCGGCAACCATACTTGTTAAGGCGTAAAGGCGGCCTTGCCGACCATT
AGGCGGATTATATGTTTTAACTATAGATTTTGGTAGGCGGTTGGACGCGG
CCTAGGGGACAAGGCAGATTAAAAGTTGGCTATTGTTTATTAATATTCAT
GTATTATACTCCCTTCGTCTTTACATTGGGGTTGGACATGGAGGTTAAGA
AAAATATATACTGTACTGTAAAAGAGAAAGAAAAGTGGCTAAAGTAGTGG
AAATCATTAATATTCAATTGATAGATTAGTGAAGGTGGATCAAATTAGTG
GGTGAGATTAGTGTTTTATCGGAAAAGTTTACTAATTTTTGAAAGTTTTG
AAATGTAAAGAATTGAGAGCGACATCCCAAGAAGGAAATTGTGAAGAAGT
CGATGGGATGACGGTAGTGCGCGCCGCGCGTGTATATATATGTGTGTGTG
TGTGTGTATATATATATGTTACAATATAATAGAATAACTATAGTCATACA
ACTAAAATATCTGGTGCAAAATAAAAACACATGTATGTACTATGTGTGTG
TGTGTGTGATTTTTAAAGAAAATAGAAGAATAACCTAATGATATAATTCT
GAATCAATTTGTTGGGAGTAGATAAATTTTTTCTCCCTTTTCCTTCTTAG
ATTGTTGTAATTCAGGTATACTTATGAGTAATTATGGCCTCAATGATTAC
AACACAATGTATATTCTCTCCAACTTTAAATATGGAAAGACCGGGTCAAA
ACCTCCTTTCTTACACACTCACACTTAAAGCCACCTTTACATGTGAATGC
CATAGCACTTTTGATGAACATGTATACCTTCTATTTAATTATGTGTAGAC
TCTGTTTTATTATTTCTTGAGGTCTTACTGTGCTTTCTAAACGGTAGGGG
GACAAGATTAGAAGGCGTGACAACTGGAAGAAATGGATATCCCCATCAAG
ACAGGTTGACCCTGACTCTGCATTATCTTCTCCCATTCAATTGATTGATA
AAGTGCTGGAAACTTCCATTCAGAATATCACACTAGATGAGTCCGATTCT
AGCAAACTCAGGACTGTGGAAACCGGGGATGCTCACTTGGAGGTGTTTCC
TGGGAAAATATCTGGTGAAGCAACAAGTTCTCAGACCAAAGTAGGTAATG
GGGTGGATACTGCTGGAGAAGTGTAA
Sequence Length: 
12876
Sequence Checksum: 
c336e29eb711a1c14e27af0325be4d56
View location in JBrowse: 
Cds: 
>DCAR_022939cds ATGGCGGCATCCAGCGAATCGATCGCTCCTTGTTTATCGGTTTCTGAAGA CAATGCTGCAGCGACAAAGTCGTCGGCGTCGTCGTCTCCTTGGATGAAAC CTGTAAACGGCGTCGTGGAGCCTGTCATGGGGAGAGACTCGTGGCCTACC ATTACTGAGTCCACTCGCTATCCGCTGCTCGTTAAGTCTTCTTCTGATCC ACCCGATGCTGCAGCAGCAGCGGCGTCGTCGCTTTCTGTTTCCGTTTCTA AGGGATCTGTCAAATCAAATGCGCATCAAAAAGCTGACACCAATGGGAGC CCTAATTCGTCTAATCACAATGCACACCCACATCCTGTGCGACAAAGGCC AAGCAAGAGAGGTGGTGGTGCAGCTGGTGGATCAGTACAGAGTGGCTTTA GTCGACCAATACCCCCATCTCCAACACCACCCCCATTCCCAATACCTTTT GGTTTGTTACCACCAATGATGGATCTACAAGTTAGAGAGCCTCCATTTAA GGGCAATACCTGGGAAAGCAGACCAGTCGGAGGGGTTGGGTCTCAGTCAA ACAATGGAAATGATCACTCATCACAACGGCATCCCTCCAGGAGAGGAAAC TATGGCTCCCGTCCCCGTGGAGATGGAATGCATTATAATGGTCATGGGGG AAGGCGTGATCAAGACCGTAACTGGAATCCTCCCCGGAATTCTACTGCAA GGGATGTTCATATGCATCAAATGGCTCCTCCCCCACCTCCCCCTCCTCGC TTTATGAGACCAGGACTCCCGGGTTCTACGCCATTCATTCCACTCCCACA TGTGTATGGGAATCCCATGCCTTTTGAATTTGTCCGGCCCATTCTGTACG GTCCACCATTGCCACCAGAGTCGTTAAGGGGCGTTCCGTTGATTCCTTCA CAGGTTCCCCCACCGGTGGTTTTTCCTTTTGTTGATCCTAATCTACCTTC TCTATTAGTCAATCAGATCGACTATTATTTCAGTGATGATAATCTGGTGA AAGACGAATTCTTAAGGTCAAAAATGGATGAACAAGGATGGGTGAATATT AGTGTAATAGCCAACTTTCGACGGGTTCTGAGTTTGACAAGCAATGTCCA GCTGATCTTGGATGCTTTGGGAACATCAACAGTTGTTGAAGTACAGGGGG ACAAGATTAGAAGGCGTGACAACTGGAAGAAATGGATATCCCCATCAAGA CAGGTTGACCCTGACTCTGCATTATCTTCTCCCATTCAATTGATTGATAA AGTGCTGGAAACTTCCATTCAGAATATCACACTAGATGAGTCCGATTCTA GCAAACTCAGGACTGTGGAAACCGGGGATGCTCACTTGGAGGTGTTTCCT GGGAAAATATCTGGTGAAGCAACAAGTTCTCAGACCAAAGTAGGTAATGG GGTGGATACTGCTGGAGAAGTGTAA
Pep: 
>DCAR_022939pep MAASSESIAPCLSVSEDNAAATKSSASSSPWMKPVNGVVEPVMGRDSWPT ITESTRYPLLVKSSSDPPDAAAAAASSLSVSVSKGSVKSNAHQKADTNGS PNSSNHNAHPHPVRQRPSKRGGGAAGGSVQSGFSRPIPPSPTPPPFPIPF GLLPPMMDLQVREPPFKGNTWESRPVGGVGSQSNNGNDHSSQRHPSRRGN YGSRPRGDGMHYNGHGGRRDQDRNWNPPRNSTARDVHMHQMAPPPPPPPR FMRPGLPGSTPFIPLPHVYGNPMPFEFVRPILYGPPLPPESLRGVPLIPS QVPPPVVFPFVDPNLPSLLVNQIDYYFSDDNLVKDEFLRSKMDEQGWVNI SVIANFRRVLSLTSNVQLILDALGTSTVVEVQGDKIRRRDNWKKWISPSR QVDPDSALSSPIQLIDKVLETSIQNITLDESDSSKLRTVETGDAHLEVFP GKISGEATSSQTKVGNGVDTAGEV*