Resource Type:
Gene
Organism:
Name:
DCAR_022928
Identifier:
DCAR_022928.gene
Locus Tag:
DCAR_022928
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_022928, is a part of gene, DCAR_022928. |
| The genetic_marker, MK011269 6_3607188, is located in gene, DCAR_022928. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_022928 | DCAR_022928.mRNA | mRNA | DCARv2_Chr6:3606403..3619802 |
Sequence:
ATGATGATTTTCTCTCCAAAATCTCAAACCCTATCTCTTCTCTCATCTTC
TAATTCAGCTTTTACATCTCCTTGCTCTCTCCGCCGTCAATTTGTCGGCT
CCGGCCACATATTCCGACCTCCGGGCAACCTCTGCTACCGGAAAAAATGG
AAGAAGAAGAAGAGGATAGGCTTTGACATTGACGCTTCCCGAGGCAGACT
AGTCGTTGTCAAAGCTTCTATAAGTTCGCAATCCATCGTTGTGTTGATTG
CAGTTGTTGCTGTTTCCGCCATTACTGCTGCTTATCTTAATTACCGTCAA
CGAAAGCCTAAACAGCACGAGGTTATATTTCTTGTCTTGTTTTCCATGTT
TTTTTCTACTGTATTTTTTTAATTTTGTTTTTCATATAAATTATCATGAT
GAATTAAGTTAGACTACTCAAATGAAATCATTGTTGTTTTCTCAGCGTTT
TAAATTAGGCTTCTAATGCTTGTTGTAGTTGCCTGGACCCGTAGATGATC
AAAACACTGTCCATGACAAGGAAGATAATGCAGAGCTTGCGTCGTCGAGC
CATTCTCGAACTGCAATTTTGTCTTCTCTACCTGTTCTGCAGGCCCAATC
TAATGCTCACCCTGTCGACTTGGACTTGGAAGAGGAAGAAATCGTTGTGA
AACAAAATGCTCAGGAAAGTAAATCCAGCTCTGACTTGGCCTTGTCAGAG
ACGGTTTCTCAACTAGATGCTGCACTTGTTCTACCTAATCATACGGAGAT
AAAGGTGGACCAAGTCGACAAACTGCGTCATGAAATTGAATCAAGTGCTG
CAACAGTTTCTCTAAATTGTGTAGTTAGTGGAGTGGTTGAACTTGATAAA
CCAAATGATGAAACTATTGACGAAGCGCGTGTTGATAAATATGCTGGAAA
TGGAGATTCTGTCCGTCGAGAGCTCCACACATTTTATGAGGCTAATCAGT
CTCATGTGCCACCCGGGGAAAATTCTGATAGTGTAAAGCCAGTGCATTCT
CATGCTTCCTCTAGCGAAACTTATAGCATATATCCACTGAATAGGAGTTA
TATAAACGGAGCAAAATTTTCAACTCTGGACATTCTTCCTACTTCAGGTT
GTTCGGTACAAATTGCATTGTTCTTGAGATTTAGTTTCACATCTTATGTA
CATGTTCTCCCTTTTTTGACTAAAGCGATGATAGAAATTTCTGTTATTTA
AACTATACGTACTTAATATTAACAGCGATTAATCACTTAATACTTTAGGG
AATCATGAAGGAAGGCCTCATCTTGGATTTTCCGCAGAGGTTTCATTTCG
AAAAAGCAAAGGCTCAGGAAAAAGACACGAGTTTTTCAGTCAAAATGAGA
GAGAGATGATAGATCAGAATGGTCACAGAAGTTCATTAATCTCCTCTTAC
ATAAAGGAAAAACACATCAACGAGAGACGTTCTCGTTCTGAAAGATCCAC
TGCTTACAGGCGCCTTCTGAAAGAAGGGAGGTAACTTGCTTATTTCATGT
TCTTTAAATATTAGATTATTGCTGCCCCAGCCCCCCAACAAATGCTGAAG
TAGCAAAGGTTTCTGAACTAAATTATCAATATGATTACTGGTGAAGTACC
TTTTCACTGACTCTGAATATTTAATTCATATATTCCTCTTTTGGGGTCAG
CTTCATGGTTTTGGAAATTACTTGATTGAGTTTCGGCCACAGGTTAGTGG
ACTGCTTAGAATTGCTTGAAGATATGGAAAAACAAAACTTGCTAGATATG
GATAAGGTATTTTACAAGCTAGATAAAATGCCAATTTCTGATATTAATTT
AAGAGTTGCTGATTGGAGGGGTGCATCGGTCTCAGATATATCATGCAGGA
TTCTTCCGGAACTGCAAAACACAAAGAGCTGTCAAAGAGGCTTTTCGTTT
CACAAAGCTTATCCCTAATCCAACCTTAAGTACATTTAACATGCTTTTGT
CTGTTTGTGCAAGTTCTCAACATCTTGAGGGTAATTTGCAAGCATTTTTT
TTCTTTATTACTATATAATTATTACCTTTAGTTCTGAGACCTATACATTC
TATGTAGGAGCTTTTCAAGTAATGCAACTTGTTCAGGAGGCTGAACTGAA
AGCTGACTGCAAACTTTACACTACTCTTATATCAACTTGTGCAAAATGCG
GAAAAGTTGATTCAATGTTTAAGGTGTGATCCTCTGCCCCCATCTGTATA
TATGTTGTTGATTTAGTGTTTAAGGTGTGATCATCTGCCTATCTTATAAT
TTACAGTATATGCGTGTCTGTTTGTCAATATAATGTATATGAAAGATGGT
CAATGGCATAGTTCAATATGTTCTACTGTTAAGCAACTCACTTCACACCA
TCAATTCAAATTAGTATTAATTGAAATCATGAGGGCGCTAGTTAAGGAGC
TCGACAAACAATCCACAGAATAATTAAGGATAATTTTGCCTTTTTATAGA
TGTAGTAGCTTACAACCATGGGATGCACGGAATACGGAACTACTTTAATA
TTTTCATTTTTTTCATTCATGTGTTAATAATTTATATAATAGTGATAAAG
TTCTTATATAAATAATAAATCATAATATAAATAAAAGATTGTAATATTAA
TAGTTCATGTGTGAAAATTTTGTTATCATATAGTTATAATTTTATTTGTA
TAATAATATTGAATTTAATCACTCGTGGTTGATGAGATTTGAACCTCAAT
TTTCTTTATCCTTGAACCTAATAATATATCTGTTTAAATTTATTATGTTA
GGATTCGAACCTTAAACTTGGTAATATTTTAAATAGTAAATATAGAACAT
TCTTTAATATCATATCTAACGATTTTCATCTATATGTTTGAAAGATCTAA
CGAAATGTGGGCTTAACCAAATTAATAAATATACTTATCTTGGTTATAAT
AATATATAATATAGACAACTTTTTAGTCAATTCAGTGCTTGGTTGCCCTC
TTACAAGGATAATTGAAGAATAACTAAATTGTGTACATTGGTATTAACTT
TAGTTAAAATCCAGGAAGCGCAGACTCAAATACGGCGACATGGGAAACGG
GTACGGGGATTCACCAATCATCTAAGAGTCTTGCATGCAAGACTCAGCGA
ATAATAATAAAAAGTAATAATATATGTGAAAATAATAATGAGAAATTTTG
CATATGTAAGTAACACTTAACATTATTACTAGGGAGTAATAAATATCAAA
CAGGTTAATCAAAATATGCATTTGGGAAGTAAAATTAGTCTTTTATTGAG
TGTTCCACAAGTAAATTAGAAGTTGTGAATTCTGCATCTGAGATAATATA
TCAGATTTTTAAAATTTTATTTTACTGTTTGTTTTTAATTTTGTAATTAT
CTTTCTTTGATTTAATTATAAAACATGTCAAAACTAGCAAGTCTCTTTTC
TTTTGCACAATACCATCTAGGAACAAAACTTTATCTATAACTGAATGTCC
TTGCGTCCAATCCCCCAGTACCCCAATTACTCAAAAAATAATTTCAGCAT
CAAGTTTAAATATTGTCTTAACATACATGTCATACTGATCCACTCTTCAA
TCCCAAACATGGGCTTCTCGATGAGGGGTGATAGCAAGAAAATAGACAGG
AAAGAGAGTATTAGGAAATAAAGTAGATATGTAGGCAGCAGAAAGCAACA
TAGTCCTGTAAGAGGCTAAACTTATTTCTTTGATTGTTGTATTATATGAT
TAGTAAATAGTTAAACAATCCAAAATATAGACAATATCAACTAATATTTG
ATGGGAGAAATGTAAAGTCGGAACACAACTGAAAGTTTAAGTATGCATAC
TGATGACTTTAGAGGCTAGAGTGAGTTTTGGGCAACATAGAGGGACGCAA
ATTACAATTTAGTCTTATTATAGTTGTTTTAATATAATATCATGCTCATT
GACATTCATGAAGTTGTAGGTTTTCCATGAAATGGTTAATGCTGGAGTGG
AACCCAACGTCCATACATATGGTGCTCTAATTGACGGCTGTGCTAAAGTT
GGGATGGTTGCCAAGGCATTTGGTGCTTATGGCATAATGAGATCTAAAGT
ATGGTTTTACAATGATGTATCTTTATCTCTTTTTTTAAGTCTTCATTTAT
TTTCAATTTTCATCGTTTCCTTTTATCTGCAAGCATGGTTACTGTGTCTT
GTATCTTTTTATTTTTCCATATCGATTGCATTTTTGCATGCAGTAGAATG
TGAAACCAGACCGAGTTGTATTCAATGCACTTATCTCAGCATGTGGTCAG
TCTGGGGCGGTGGATCGTGCGTTTGATGTACTAGCAGAAATGAGAGCCGA
GACCATTCCAGTTGATCCTGACCATGTTACTGTTGGTGCTTTAATAAAGG
CATGCGCAAATGCTGGTCAGGTGAATGATCCTTTTAACTAGAAATAGTTG
CCTACATGTTGATTTATATATACTCACTTTGAGGAACGATCTTTGTCAGT
TTTTACATCAGTTTTAGTTATTAATGATCTAACGTTTCTAGGTTGTTCGG
GCACAAGAGGTGTACAATATGATCAGCAAATATAACATAAGAGGCACTCC
AGAGCTTTACACCATTGCTATTAACAGTAGCAGCCTGACTGGTGATTGGG
AATTTGCTTGCAATGTTTATAATGACATGAGAGAAAAAGGGGTCATCCCT
GATGAGGTATCACTGTATTGTCACTTTCTACTTGTTGACCATCTGACGTA
TTCCTATTCTGTCAAAAGTCTTGTTACAAATAGCCTATTGGCTTATATTT
TATTCCTGAATGTTGCTTTTTTCTGAATGGTTAGATGGTTGGATTGAATA
ATACAATTAATTTGTCTACACTTCATTTATATTATTAATTAATGGTTTTG
ACTAAGAATCTAGTATCCCAATCACATGGCTAATGGAAACTTACCGAAAT
AAGTATTCAGCCATCATACGGTTCTGACTCTTGATTGTAAATAGGCGGCA
CATGCATTACAAAAGAGGTATATTAACTATCAAGTGAACAGTTCTCCAAA
AACCATAAGGTGTTAGGAGGGCTTACGATGATCATATTATAATATTAACA
CTCCCCTTACTCAAAAACCCATTTTTATATTGAAGAGGGGATCACGGGCG
CCCTTGGGGAAATAATTTGCATTCGTGTCCATAGTTTTTCTAAAACCTTA
ATGTTGTTTTTGGTTTGGGAGAATGGATAGGAATGGAATGGAATGAAATG
ACTAAAAATAATTGAAAGTAATACTGGTAGGAAGGAAGTTTTGACAAAAA
ATTGTAAGTGCAAAATTGTTATGATGAGATTTGAGAAAACATTGACTATA
CTATAGGAGGGAATGGAGCATTTCTTCTCAAATTGGGGGTGTGAACTCTA
GTATAGGGTTCAAGGAATGGAATGGAGGAAGGAATGAAATTTATAAACAA
TTACTCATAACATATTTCAAATTTCATTCCAGTCCTTCCAAATTCATTAA
CCCCAACCCAAAAAAACATAAGGTGTTTGGAGGAGGACTTACCAGGATCA
TATTGTATTCTAGATACTAACCACTAAGTTGCTACTCATGACTAACATAG
AGGGTAAGATGAAGGCCAGAGCCTGGAGGATACAGTTGAAACTTCTCATG
TCTTTTAACGTGATTATTGATTAAACCACAATTCACTTCAAGTAGTGATT
ACTCTAATAAAGTATAATTATTATGGTTTCCTACACTGTACAGGCAATTT
CAAAAATTCCATCTGCAACAAATCAAAATTGCGTTATATATTGAAAGTTT
GAAACTGACTTATATTCTTTTGAACTGCTTGCTAGGATATCATAAAGCTT
ACTCAAGTATTACTTTCATTTTTGCAGATGTTTATCAGTGCATTTATAGA
TGTTGCAGGGCATTCTAATAAGCTGGAATCTGCCTTCGAAATCTTACAAA
AGGCTAAAAGTGATGGTATGAATGTTGGAATCATATCATACAGCTCGTTG
ATGGGAGCATGTAGCAATGTATGTGAAACCAATCCCATTTACAAGTTTAT
TGTTTTCTCTTAACAAAGTTGTTTGGTCTACTCCACTTACCTCGTATTGC
ATTAAAATCGGGCTGCCTAGCCTAAAACTCAAGCTAACCTTGTGAGGAAT
CAAATAATACTTATGCCTATCTTTAGTGGCTGCAGTTTTAGCAATCTAAC
TTACAATAGGCTGTAAGCTTATGCCGAGTAAAATCAGAGAATTTAAGATA
TGCATCTATAATTTGCAATGAACTGTAAAAAAAATGATTTTCAATTCTTT
TAGGTATTGGTTTCTATCTTGCTAGCTCACGATGTCCATTTATTGATGAA
ACTAGCAAGGACAAACCCCAATCAATGCAGACTCTAGTTGTCTTTTAAGT
TTATACTGGTTTTGCAACATACACATAGAATGAAACAGATTGCTAAGTAC
GCTTAGTTTCTTTGGTGAACTAGATATAGCAATTCATGACACAGTAGTTA
TTAGATACTCATAGGCTCAACTTATTTAGCCCATGTTTCACATGGAATTC
AAAAGAATCTGATGATAATGTAATTATGAAGGACTATCACAATTCACAAT
CTACAAACTCTTATTCCAGCGATATGTGACATGCAATCTGGCTTGTTTTG
GAGGGTCTGTGTAAAGACAACATTATTTTTTTTTAGCCAACATAATGACG
TGTCTTCTCCATATCCTTGCATAATACATCCATAAATTTTTCATAGTTCA
CTCCTTAAACAGCATTGACAACAAATAACAAAATGTGGATATGCTCATAA
GAAGCTTTATATTGCCACTTCCTATCAGTGGAGACCATTGTCTTAGCTTA
AATTTTACTCTGACAGTTGAATAGTCTATGCATCATATAAGGGGCTTCAA
TTCTGCAAGTACATGTAATCTGCAATCCCTCGCTTCGGCCATTTCTAGGA
ATTTGATTGAATAAGACATGACTTCATTTCAGGTCAAATCTGTAATTTGA
GTGGCTTGGCACTGTCTATGGTTATGGTTTAAAGATTACTTTTTTTTCAG
GCAAAAAATTGGCAGATGGCACTGGAGCTCCATGAGGAAATTAAAGACAT
GAATATAAAACCAACAATCTCAACAATGAATGCCTTAATAACTGCCTTGT
GTATGTCTTATCTATCGTGCTTTGATTATTATTATTAATAATTTATTTCA
TCTGATGAATTGAGTAAAGGATGCTTCCCTTTGCTTAAATAATCATATCA
TAGTTTCTTTGTTAATTGAACTAGGATAGAAAATTAAATTGAGCAATTAC
ACTGCAGGTGATGGCGATCAACTGCAGAAAGCACTCGAAGTTCTATCTGA
CATGAAGAAAGTAGGATTATGTCCAAACACTATTACATACTCCATTTTAC
TAGTGGCATGTGAAAAGTAAGTTTATACACAGAAAAAGTATGTTCTTGTT
ATGCAACATAGTCTCGTTTTGACGTTTTCAGTCGTTTGCAAATTCGTAAT
TCTAAAAATAATATGGACTCCCATAAATGTTTCTTGTTAGTTGGTATTAT
TATTGAATTGTAATAAGGTAGACATACTACAAAGTAATTAAGCCTTAAAG
TATTTTAATTCGAGGATGCAATTTAACACATCAATTTTACATTATAATTC
TTAACAATTTGACTCTAAACCGTCATAGCAGGGCTATTTGTATAGAATTC
AGAGTGTGATATATGTTTATTTTGTGAGTCAGTGCTCTGAATCTCATCAA
GTTGTAATACAATTGTAGGAATGATGACCTAGAAGTTGGGCTTATGCTTC
TTTCTCAAGCAAAAAAGGACGGCATTGCCCCAAATCTTGTTATGTGCAGG
TGTTTAATAGGTAACACAGAAGTTTACTCTAAATATTATTGCTGATATAT
ATGTCTTCACTTCATTGAATGTACTAGTACTTCATTATGGCTGCGAATAC
CTTGACTATGTTATACCGTGCCTTCTTGTATAATTCTGTACGGAGGTCGA
CGTTTAAAATGTAGTATATTCTTAACCTTGTCTCTTTGCACTAAAACTGT
ACCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCCCCCCCCCCCCCCCAGATATTGAAGTTACTTTATTTTTGTCTGTAATG
AGTCGCATCAAGATTGAATTGTAGACAATGAGGAAATGCGATCCATTGTG
ATGCTTGATACATTTTAGGGAGGGCTATGTTAATATCAAGGCGTTAAGTT
TGATTTTCAAGAGAGAACAGACAGTTATGACTCCTTATCTTTTGGTAATT
TAAAAGTGAAGGTAAAAATTATTTACAAGATCTGATTCTACTAGCTAGAA
ACCTAATATAAGCATACAGGCATGTAATATGTATACAAATCTTATCGCCC
TTCACTAGTGATTAAATTGCTAATTCGAAGGTCAGAGTATTTTTGAAATT
TATCCTATCTATCACCAAAACATTTTCTCGATTCAGCTGATATAATCATC
TCCCTTTTACTTTTAAATGCATTACAAGTATAGGGTGAGTAAGGATATCC
CTGGACCTCTTTTAGTACCAGGAGCACCTTTGCTATGGCTCGTACACTTC
TTGATCCTCAGTTATCCCCTATCTTTAACACTTAGATACACGATCTGCTA
AGAATGTAAATTTCATAGAAAAGTTGAATTGGCCAAGAACATTTTTGCTC
ATCTCATTATTCAATATTGTATGACATTCTGTACTTAATTCTACCAAATC
CGAGGCAAGTCATATAGATAAGTAAACAGTTAGGCCAAGATTAAGCAACT
CATATAGATAAGTAGATATAATTAGCCCAAGATTCTTTCATATATTTGTA
AGAGAGTGACTGAGGAAAATTATGTCCAAATTTGACTTTGCTCCCCACTT
CTTTTGTTTGGTACTTTTAACAGTAGGAATAGACAACCTCTGTTAGCTAG
TAGAACCGCAGAATGGGGATAAAAGTTAGTTTTCTGTGTGTAGTTGTCAA
GCTTTCCCTATATGGTACTTGTGTTGATCTGTCTTGAAATCAACACATTT
TTGCATAATATGTCGTGCTGTCATTTCTTCAACCACATCCTTGTATCTTT
CATTTAGAAACTCCGTTATAATATGGGTGATCATGCTGTATGCTGCTTTC
TTAGTTCTTCACTCTGTAATTGGTCATCTTCTGTTTTACATGTCCGAAGC
TTTATGCTTGCGCCGATTTGAGAAATCCTGTACACTTGGAGAGGATGTCT
TGTCTTTGAATTCTGGAAGGCCACAGATCGATAGTAAATGGTACACATCT
GCTTCACTCAACATTAAGCTGCTTTTTAGTACATGTATTTTGATTGAGGA
TAGTAACAGATCAATGCAGAAATAAGCAATTGCCCTTGAGATATGAATAA
AAATCTTTATGTTATAACCTTAAGCATTTGTTTAGTTCATTGACTTAATT
GCAGTGCGGAAGATATCTTGTTTTCCTTCGCATATGTCAAAGTGTTAAAT
CAGCATACTTTTGCTCATTTGTAAATACGTCTAAAAAGGTTTCAAAAATG
CTTACGTTCATATAGTCATTTACACGCCGTATAGCTGACGAGATGTAAGC
AAATGCATATCTGTGAATGTCTTTCTATGTAATGGCCCAATTAAGCATGC
TCAGCCCCTTTTAAAAAAAACAAACGTACAAATTATCCTTGTGTTTGGTT
ATAATAGTATAACATAGATATGATTAAGACTCCGCGATTCTTGAATACTG
GACCTAATAAAATATATGAAATATATATTTTCTTTTTTATATTTGAGATA
TTAATGTAATGCTTATAACTTAGATATTATGTTACCGTAATATATACACA
AACAGGCATATCGAGTTTAGGGCTTGGATCGGGTTTGAATTGGGTTTTGG
ATCATGTCTACACCTCTATTCCAAATCAAAATTCGAACTTTTTCGAGTTA
AAAAAATTAAATCCAATCGAATTTCAGGTTTGGTAAAATACAATTGGATC
CAAATGAATCAGGCATCAGTTGGATCGGATTGTTTTGCCACCCCTACTTA
TAAAAAATCATTGTTTTCTTTTAATTAACCGGCCCATCTAAAATCTCAAG
GTCACAGAAAAAGGCCTCAACAAATTCTTATATTGTTTAAGACTCCCCTT
AATCGTACTTGCCAATAGACACACAAACAAATAATTACATAAAACAATTA
TGTTAATGGCTTAATGAAATATGAAGAAGTAATGAAGTTTCTGATATGAG
CTGTTTTTTCTGCAGGACATCGATAGTCTTAAGGGTTTACAGGGAAGCAA
TTATAGCTGGTGTGGTTCCTACAACTGAAGAGTTTTCACAGGTTTTGGGA
TGCTTGCGGCTTCCTCATGATTCGTCTTTGAGAGCTAGACTCATTGAAAA
TCTTGGAGTTATTGATAGTACATCAAATAACTCAAACCTTTGCTCACTAC
TCGATGGATTCGGGGAATATGATCCCCGTGCTTTCTCATTACTTGAGGTG
TACAAACAACTTTACGTCTTTGATATATATTTAAAAGATTCCGTTACACA
AAAATGAGTCTATATTTTAGCTTTGTTACTCGGACTCTCCATTTTTGTCC
TTTTGCGTGTGTCTAACAGACGTGCTATGCGTGTGGGTATGGGATCTGAA
TCGGATCCTTGATCTGAATCGGATCCATGATCTTAAAACCGGGCACTTTA
CCCTTGTAGCATCTAGTTCAAAATGAAAATTAAGGTGTTGTTACAACTTG
TTTACAAGAGCAAGGTCCATAAATGACTTGTTTAAAAGAGCAAGGTTCAT
AACTGACTTGTATAAATGTTATTCAATTGTTTTTATGTTGCAATTTAACA
TACATAATCAAGCATATGTGATTTATGTGTAGTAGAAATTAAATTTTATG
AATGTACAATAAATTAGCCTGTATGATGTTTTACTTGTATTAAGCTTACT
TTTATTAGGATCCATATCCAAGAATTATAATCATCCTAAAACTATGAATC
TGACTCTTGGATCCGCACACGTGTTCGACACCCATACCCGAGTGTGGGTA
ACATAGTGAGTGAGTGGAAATATCATCTGTTTTTGTGTTTCATTGCAGGA
AGCTGCTTCACTTGGAATTCTCCCTTCTGTATCTTTCAAAGATATTCCAA
TAGTTGTTGATGTGCGAAACCTACAGATTCATAGTGCAGAGGTGATTATC
CTTAAGTGTCACTAGAATACTGCATTTACAATTTAGCAGAGGGTAATATT
CCCTGCAAGTACCGGTATTTGTTTTCCTAGAGTAGTGGCACTTTTATGAA
TTAAACTATCTAGGGGCTATCTTGACACAGTAATATACATGTTACTGAAA
GTGTAAAGCCTACGAGCACGTTTATGTACATCTTTATTCTAGTATGTTCT
AACTATATTGCTTCCCTGATGCTGTTTGTGATTTTTTTTCCTGAGAATTC
GCAGGTGTTTCTCCTTACAGTTCTAAAGAGTCTGAAACATCGTCTTGCCG
CTGGTATATATATACATCCTTATTTAAATAATATTTACTTGACAATTTCT
TATGTTTAAGAATGCTGAGGACCAAATCGTAACAATGACCTCAGTTCATT
AATCTGAAAATTTATCAGTGCATTTGCTCTCCATTGGGGAAATTCTATAT
ATCAACATCTTAGTTGAAGCAGGATTTATAAATCTGAGAGTATGCTTTAT
TAACCTTGACATCTCGGACCTCCTGTAGTTTCTGCCATGATGCTTGGTTT
ACTTATCTGGCTGGCCTTCTTTTATAATTTTTGTTTATCTTTCAAAATTG
TTGCTGTATTGTCAGAACAATGTTACCAGAATACGATGGTAGAAAGTTAT
TATTGCTGTAGATTATGACTGGATAATATGAAGAAGTGGATACCAGTCAT
TCTATACTGAACACTTTTTTTCTTCTTTTTGGTTCTTTGGTTTTTTCAGG
TGTAAAGTTGCCTAATATAATTATATTACTACCAATAGACAAAATACAAG
TTCAGTCTTCAAAGGGGGACAAGATGATAAACCTTGCTGGAAGGTATGAT
ACAGCATTTTCAAAACTAATCGCACCCAAGTCAATAAAATACTTTTAGCA
ATTTCAATGCAATAATGTCAGCTATACCTCCGATCTATGTTGTATTTGAA
TAATCTCAGTGTATGAGAAATTATAAAACTAAAAAGTATATGCATCCCAT
TATTTTCAATAAGAAGCACACATATTGAGACCAGTAATTTATTAGAAGGA
AGAGAAGAAGTCCAAATTGTTGTTTTCAAATAGGGCAAGCCAGAATTTTA
TAAAAAGTATATGCACCCCATTATTTTCAATAAGAAGCACACATATTGAG
ACCAGTAATTTATTAGAAGGAAGAGAAGAAGTCCAAATTGTTGTTTTCAA
ATAGGGCAAGCCAAAATTGGAATTCGTGCTCTCGTAACAACCTTTATTCT
AATATCTTTTGTTCTGTTCTATTTTCAAACTATAGTTTTTGTAGCAACCT
TTTTTCTCAAACTGTTATATTTTCTGGAGTAATTGCGTAGGAGATCTGAT
TTGCAATTTTCGGTTCACACTAAAGATAGGAAATTTGAGAAAGACGTTTA
TGCTGCTGATTTGGGCAGTGGTCTGGAATAGAGATAGAAGAACATGTTTT
CAGTAGTTGTAACAGCCTGCCTACTTGTCTAAGTTGATGGGGCATAATTT
ACCATGTTTGGAGTGAAGTATTGTAATGTCTCTAAATATTTGAGTGTTCT
GTCTTGGAAAACAGGACTAGCCGTGCAGTTGCAGCATTATTGAGGAGACT
GGCAATACCATACATAGGAAATGAATCATTTGGGAAAATTAGAATGAATG
GAGTAGTTGTAAAGAAATGGTTGCAGCCAAAACTTACTTCCCCTTTCAGG
GGTAAACTATCAAATTTGAACTCATCTCAATCTCACCTTGGTAGAAACAT
TTCTCTGCAGCAACGTAACATACGAATCGGTAATCTGTCCCTGGAGTGA
Sequence Length:
13399
Sequence Checksum:
47a48c5be8fc7a1391e2a01cbd6aae0c
View location in JBrowse:
Cds:
>DCAR_022928cds ATGATGATTTTCTCTCCAAAATCTCAAACCCTATCTCTTCTCTCATCTTC TAATTCAGCTTTTACATCTCCTTGCTCTCTCCGCCGTCAATTTGTCGGCT CCGGCCACATATTCCGACCTCCGGGCAACCTCTGCTACCGGAAAAAATGG AAGAAGAAGAAGAGGATAGGCTTTGACATTGACGCTTCCCGAGGCAGACT AGTCGTTGTCAAAGCTTCTATAAGTTCGCAATCCATCGTTGTGTTGATTG CAGTTGTTGCTGTTTCCGCCATTACTGCTGCTTATCTTAATTACCGTCAA CGAAAGCCTAAACAGCACGAGTTGCCTGGACCCGTAGATGATCAAAACAC TGTCCATGACAAGGAAGATAATGCAGAGCTTGCGTCGTCGAGCCATTCTC GAACTGCAATTTTGTCTTCTCTACCTGTTCTGCAGGCCCAATCTAATGCT CACCCTGTCGACTTGGACTTGGAAGAGGAAGAAATCGTTGTGAAACAAAA TGCTCAGGAAAGTAAATCCAGCTCTGACTTGGCCTTGTCAGAGACGGTTT CTCAACTAGATGCTGCACTTGTTCTACCTAATCATACGGAGATAAAGGTG GACCAAGTCGACAAACTGCGTCATGAAATTGAATCAAGTGCTGCAACAGT TTCTCTAAATTGTGTAGTTAGTGGAGTGGTTGAACTTGATAAACCAAATG ATGAAACTATTGACGAAGCGCGTGTTGATAAATATGCTGGAAATGGAGAT TCTGTCCGTCGAGAGCTCCACACATTTTATGAGGCTAATCAGTCTCATGT GCCACCCGGGGAAAATTCTGATAGTGTAAAGCCAGTGCATTCTCATGCTT CCTCTAGCGAAACTTATAGCATATATCCACTGAATAGGAGTTATATAAAC GGAGCAAAATTTTCAACTCTGGACATTCTTCCTACTTCAGGGAATCATGA AGGAAGGCCTCATCTTGGATTTTCCGCAGAGGTTTCATTTCGAAAAAGCA AAGGCTCAGGAAAAAGACACGAGTTTTTCAGTCAAAATGAGAGAGAGATG ATAGATCAGAATGGTCACAGAAGTTCATTAATCTCCTCTTACATAAAGGA AAAACACATCAACGAGAGACGTTCTCGTTCTGAAAGATCCACTGCTTACA GGCGCCTTCTGAAAGAAGGGAGGTTAGTGGACTGCTTAGAATTGCTTGAA GATATGGAAAAACAAAACTTGCTAGATATGGATAAGATATATCATGCAGG ATTCTTCCGGAACTGCAAAACACAAAGAGCTGTCAAAGAGGCTTTTCGTT TCACAAAGCTTATCCCTAATCCAACCTTAAGTACATTTAACATGCTTTTG TCTGTTTGTGCAAGTTCTCAACATCTTGAGGGAGCTTTTCAAGTAATGCA ACTTGTTCAGGAGGCTGAACTGAAAGCTGACTGCAAACTTTACACTACTC TTATATCAACTTGTGCAAAATGCGGAAAAGTTGATTCAATGTTTAAGGTT TTCCATGAAATGGTTAATGCTGGAGTGGAACCCAACGTCCATACATATGG TGCTCTAATTGACGGCTGTGCTAAAGTTGGGATGGTTGCCAAGGCATTTG GTGCTTATGGCATAATGAGATCTAAAAATGTGAAACCAGACCGAGTTGTA TTCAATGCACTTATCTCAGCATGTGGTCAGTCTGGGGCGGTGGATCGTGC GTTTGATGTACTAGCAGAAATGAGAGCCGAGACCATTCCAGTTGATCCTG ACCATGTTACTGTTGGTGCTTTAATAAAGGCATGCGCAAATGCTGGTCAG GTTGTTCGGGCACAAGAGGTGTACAATATGATCAGCAAATATAACATAAG AGGCACTCCAGAGCTTTACACCATTGCTATTAACAGTAGCAGCCTGACTG GTGATTGGGAATTTGCTTGCAATGTTTATAATGACATGAGAGAAAAAGGG GTCATCCCTGATGAGATGTTTATCAGTGCATTTATAGATGTTGCAGGGCA TTCTAATAAGCTGGAATCTGCCTTCGAAATCTTACAAAAGGCTAAAAGTG ATGGTATGAATGTTGGAATCATATCATACAGCTCGTTGATGGGAGCATGT AGCAATGCAAAAAATTGGCAGATGGCACTGGAGCTCCATGAGGAAATTAA AGACATGAATATAAAACCAACAATCTCAACAATGAATGCCTTAATAACTG CCTTGTGTGATGGCGATCAACTGCAGAAAGCACTCGAAGTTCTATCTGAC ATGAAGAAAGTAGGATTATGTCCAAACACTATTACATACTCCATTTTACT AGTGGCATGTGAAAAGAATGATGACCTAGAAGTTGGGCTTATGCTTCTTT CTCAAGCAAAAAAGGACGGCATTGCCCCAAATCTTGTTATGTGCAGGTGT TTAATAGTTCTTCACTCTGTAATTGGTCATCTTCTGTTTTACATGTCCGA AGCTTTATGCTTGCGCCGATTTGAGAAATCCTGTACACTTGGAGAGGATG TCTTGTCTTTGAATTCTGGAAGGCCACAGATCGATAGTAAATGGACATCG ATAGTCTTAAGGGTTTACAGGGAAGCAATTATAGCTGGTGTGGTTCCTAC AACTGAAGAGTTTTCACAGGTTTTGGGATGCTTGCGGCTTCCTCATGATT CGTCTTTGAGAGCTAGACTCATTGAAAATCTTGGAGTTATTGATAGTACA TCAAATAACTCAAACCTTTGCTCACTACTCGATGGATTCGGGGAATATGA TCCCCGTGCTTTCTCATTACTTGAGGAAGCTGCTTCACTTGGAATTCTCC CTTCTGTATCTTTCAAAGATATTCCAATAGTTGTTGATGTGCGAAACCTA CAGATTCATAGTGCAGAGGTGTTTCTCCTTACAGTTCTAAAGAGTCTGAA ACATCGTCTTGCCGCTGGTGTAAAGTTGCCTAATATAATTATATTACTAC CAATAGACAAAATACAAGTTCAGTCTTCAAAGGGGGACAAGATGATAAAC CTTGCTGGAAGGACTAGCCGTGCAGTTGCAGCATTATTGAGGAGACTGGC AATACCATACATAGGAAATGAATCATTTGGGAAAATTAGAATGAATGGAG TAGTTGTAAAGAAATGGTTGCAGCCAAAACTTACTTCCCCTTTCAGGGGT AAACTATCAAATTTGAACTCATCTCAATCTCACCTTGGTAGAAACATTTC TCTGCAGCAACGTAACATACGAATCGGTAATCTGTCCCTGGAGTGA
Pep:
>DCAR_022928pep MMIFSPKSQTLSLLSSSNSAFTSPCSLRRQFVGSGHIFRPPGNLCYRKKW KKKKRIGFDIDASRGRLVVVKASISSQSIVVLIAVVAVSAITAAYLNYRQ RKPKQHELPGPVDDQNTVHDKEDNAELASSSHSRTAILSSLPVLQAQSNA HPVDLDLEEEEIVVKQNAQESKSSSDLALSETVSQLDAALVLPNHTEIKV DQVDKLRHEIESSAATVSLNCVVSGVVELDKPNDETIDEARVDKYAGNGD SVRRELHTFYEANQSHVPPGENSDSVKPVHSHASSSETYSIYPLNRSYIN GAKFSTLDILPTSGNHEGRPHLGFSAEVSFRKSKGSGKRHEFFSQNEREM IDQNGHRSSLISSYIKEKHINERRSRSERSTAYRRLLKEGRLVDCLELLE DMEKQNLLDMDKIYHAGFFRNCKTQRAVKEAFRFTKLIPNPTLSTFNMLL SVCASSQHLEGAFQVMQLVQEAELKADCKLYTTLISTCAKCGKVDSMFKV FHEMVNAGVEPNVHTYGALIDGCAKVGMVAKAFGAYGIMRSKNVKPDRVV FNALISACGQSGAVDRAFDVLAEMRAETIPVDPDHVTVGALIKACANAGQ VVRAQEVYNMISKYNIRGTPELYTIAINSSSLTGDWEFACNVYNDMREKG VIPDEMFISAFIDVAGHSNKLESAFEILQKAKSDGMNVGIISYSSLMGAC SNAKNWQMALELHEEIKDMNIKPTISTMNALITALCDGDQLQKALEVLSD MKKVGLCPNTITYSILLVACEKNDDLEVGLMLLSQAKKDGIAPNLVMCRC LIVLHSVIGHLLFYMSEALCLRRFEKSCTLGEDVLSLNSGRPQIDSKWTS IVLRVYREAIIAGVVPTTEEFSQVLGCLRLPHDSSLRARLIENLGVIDST SNNSNLCSLLDGFGEYDPRAFSLLEEAASLGILPSVSFKDIPIVVDVRNL QIHSAEVFLLTVLKSLKHRLAAGVKLPNIIILLPIDKIQVQSSKGDKMIN LAGRTSRAVAALLRRLAIPYIGNESFGKIRMNGVVVKKWLQPKLTSPFRG KLSNLNSSQSHLGRNISLQQRNIRIGNLSLE*