DCAR_022912 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_022912

Identifier:

DCAR_022912.gene

Locus Tag:

DCAR_022912

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_022912, is a part of gene, DCAR_022912.
The genetic_marker, MK003308 K0752, is located in gene, DCAR_022912.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_022912	DCAR_022912.mRNA	mRNA	DCARv2_Chr6:3832882..3845460

Sequence:

ATGGAGGAAAACGATGATAATCTATCCAATAAATCTCGGCTTATTGATAT
TGATGATACAGTAGATACGCTAGAGCCCAAAGAATGCGATGTGGCTGGTG
AAAAAAGCAGCGATTTTGAGTGTGTTGGTCGTGAAATTGAAGAAGCTGAG
GCTTCGATTCCTGTGACCGAATCGGAAAATCTGTCTGAGAATTGTGTGGA
GCTGGAAATTGATGGTAAGTTTAGTGACGGCGTGGAGGTGGAAGCCGGGG
AATTGGAAAGGAAGGATGAGTTGAGTGGTGAAATAGAGGTTAGTGGGGTC
GGTGTGGATGCGAGTGGAATTGAGGTAAGAGATGATAAGGATGATGAAAT
TGAGGGAGAAGTTTTGTATGATACTGTGCGAGGAGATGATAAGAATGATG
AATTAGAGGGAGAAGTTGTGGCGGAGAAGAAAGATGAATTACAGGGTAAT
TATGGGTGTCAGGTTGCGAAAGAGGGGGAGGTAGAAGGTAATGGTGTCGA
CGAGGGAGAGATATTGGGGGATAATGATCAGGTGGAAGATAAAGATGTTT
GTGAGGATGGTTTTGACGATAAGCAAAATGTTTGCGTGCAGGTAGTGGCG
GAAAAGAAAGATGAATTGGAGGTTGAAGGTGGTATGAATGTGGGAGAAGA
AGCGGGGGATAAAGTTGTGCCCGAGAGTGAGATAAAAGATGAGGCTGGGG
TTGAATTACAGGCAGGGGCTGTATGTGAGGAAGTGAAAGCGGAGGAGCTT
AAAGGTGATTGCGGAACTGAGGTAGTCGGGGAAGCTCTGTGTGAGGTTGG
CAATGAGGCTGAGAACAAAAGTGAGATTGAGACTGAGATGAAAGTGAGTC
GGGAGCCTGTTAAGAATGTTGATGATATGGTGGAGGAGGAGAAAGTGGAA
ATGGGATATGTCTCGAGTCAGTCTCTGAATGAAGTGGAGGAAAGGGCTGC
TAATATTGAGGATAATGCAGAACATAGTTCCGGTTTAATTGGTCTTGCCG
AAGATACAGTCATGGAGGAAAAGAATTTGGTAATGGAAAGTGTAAACAAG
AAAAGAGATGATGAGTTGGATTCTGCTCCAGAGTCTGATGATGAAGAAGA
TATAATGGAAACTGGAAGAGAATACGATGAGGATAAATTTGAAGGAGAGG
TTCCTCAACCAGATGGTGATTCACAGTTGGCTGAAGATGAAGAAGATATA
ATGGAAACTGAAAGAGAATTTGATGAGGATAAATTTGAAGGAGAGGTTCC
TCAACCAGATGGCGATTCACAGTTGGCTGAAGATGAAGAAGATGAAAGAT
TGGTGGGGGACGAGGAGATTCCCGCTGCCGATGTTGAAATGGAAACAGAA
ACTGATGCAGGTGAATTAGTGAAGATCAGTGGAGGGAAGCGGAAGAGAGG
AAAGAATACAAAAGCTGCAGGAAAAGCTCAACCACTCAATATGGTCGGAC
TTCCGGTTGAGGAGGAGGATGTTTGTTTTGTTTGCTTTGATGGTGGAGAC
CTCGTGCTGTGCGACCGAAAGTATGCTGTTCTTTTAATTATAAACTATTG
GATTCTGGATGTTGCGTTCCCTTTTTAATATTGTTTATCAAATGTTCCAT
TTCTGTCAGGAACTGCCCTAAAGCATACCATGCTTCTTGTGTTAATCGTA
ATGAGAAATTCTTTCAAGCCAAGGGTCGTTGGAATTGTGGTAAGTTTCAT
GTGAACTCTTTTGCATTATTTGCATAAACGAATAAAAATGAAAGCATAGT
AGAAACACCTTTAACGTCTTACTTGGTGTCGGGCCACTTCAATTATTATG
TGAAAAGTTAGGTCTGTTACTTGTTTCACTTCTTTTCTCTGCAAGCTTTC
TGTTACTTGATTTGATGGGTGTGAGTCTTGCCAATACTTCGACCCTTGAA
AAGCAGAAGTCATAGGAATTACACATACAGCAAACTGTGTACATTAGATG
TGCAAAAATGTTTTGTTAACACCTGCCTTCTCTTTATGCAAAGTGTAAAC
ATATATGCTTTTTGCAGGAAAGCAAACATATTATAATTAATCTTGCTGAT
AGGGTAAAATGCAAAAACCATTGGACTTTTATATATTAAGAGGGTAAAAT
GTTTTCAAAGTTAACTATAGTAAATTTTCCAATATTTACTATTACTTAGG
GCTGATAGCTATTGAACATGATGTGTATGTAACATAGTTACATACTCTGC
CCTCTAAGATGAAAGAGCATTTCAGCATCTCTAGTCGTGGTACCCTTTGG
GGGTGCAAAACATTGCCAACTTGCCGAAAATTATAATATTTTTCCCTTCT
CATCCATGTCAAATGTGAAAACTTTTAGCTCTAATAGTTGGCATATCATG
CAAGGTACCTAAATGATCCCCACATTAACTATCATATTAGATCATTAAAT
ATGAAGAGTTAGATACAATAAAAGAGGCCAGATTGATACATTCATTTTGT
TCAAGAATAGAGTTTCATCCATTTTGAGGGGTGCAAAAAGTTAACCACTT
CTTTTGGCACCCTTGGAACTGCAATAGGTGGCACCCAAGAGTGCCATGCC
ATATAGATTTGGCACCCCTACTGGAGATATGTTCTGATGTGCATGTCCGG
TGATATTAGCTCTCGTCTTACCTTTGTTTGGACATCGAATTAATACTTGG
TGTAATCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCCCCCCCCCCCAAATTATCTAGGTTTTTCTGGGCCTTTAGGTG
CTCAAGTTTTTATTTTGCAACGATGACATGGAAACATTTTACCAGATAAA
TATCCATCCATTAATTTGGGGTAAAAAAAAATATTATTAGTTCTGGACCC
TTAAATTTTACAACTTTAGACATCTTAATTTTCTACTTGTGCCATACCAA
AAGAAATAATAAGAAAAAGGTCTTCGTAAATACTCAGTAGTATGATTTCA
CTGTTTCGACAAGAATTTTGTTGATGGGTGTCCACTCTAAATTTTCAGGT
TGGCATCAGTGCAGCCATACAAACTGTCAGAAAAATGCATACTATATGTG
CTATACATGTACTTTTTCCTTGTGCAAAGGATGTATTAAGGATGCAGTCA
TATTATGTGTTAGAGGAAACAAAGGCTTTTGCGAAGCTTGCATTAAAATT
GTGATGATGATTGAAGATAATGCACAAGGAAGTCAGGTACTCACTCGTTC
TGCTGATATATCTATTTCTATTGGATGTGGTGGTTATGGACATTAATTAC
TTTCCTTTACCAAGTTGAAGAATGATTTGGTTCCTGCAATACATTGTAGT
CTTGCACGCTAACTTCTTGTAAGAGACATAAGGAGCATTCTCAAGAGGAG
CTATTTTGGTTTTTACAAGATTTGGATTCACTATAGATTTAGACTATGTC
TTCTTATATTTTGTTATATTTTGAGATGAATCATGTGCAATTGTATGCCT
ATTACTTGATATTGGTGTATAGTTTTTCTATATTAGCCATTTACAGAAAT
TTAGTGATCTTGTCTGGATATTAAAAGGGCTGCCCTAGAATTGACAGATA
GCAGAATTTCTGGTCAAAATTTGCAATGCATTGTAGTATTGCACGCAAAC
TTCTTGTAAGAGACATAAGGAGCATTCTCAAGAGGAACTATTTTGGTTTT
TACAAGATTTGGATTCACTATAGATTTATACTATGTCTTTTTATATTTTA
TTATAATCATGTGCAACTGTATGCCTATTACTTGATATTGGTGTATATTT
TATCTATATTAGCCATTTACAGAAATGTAGTGATTTTGTTTGGACATTAA
AAGGGCTGCCCAAGAATTGACAGATAGCAGAATTTTTAGTCAAAATTCAG
GCATCTAGTTGTAGCGACTTTTAATGTCTGTCCTTTTTTAATATTCTTGT
TTTCTCTTCTCTGTTTGCACAGGCACAAATTGATTTTGATGACAAGTCTA
GCTGGGAGTACCTCTTCAAGGATTACTGGATAGATCTTAAAGAAAGTCTG
TCTATTTCTCCAGTTGAAATTGCTAAGGCTAAAAACCCATGGAAAGGATC
TGCTTTAGGGGCTAGCAAAAATGAGTCTCCTGGGGAGCAGCTTGACACAA
AGGATGATGTTGGTGTTGGAACTGATAATGCCTCTGATAATCCTGAAGCG
AGTAAGCCTAAAAAAAGAAAGTACAGTAAACGTCTAAAGTCTCGTGCTAC
TAAGCAAGATGAGTCGACAAGTGAAGCAATAACAGCTGGCGCGGAAAGAA
AGTCTACACCTAAAAGCACCGAATGGGCATCAAAAGAGCTTTTAGAATTT
GTTATGCACATGAGAGATGGGGATAGAACTGTTCTATCTCAGTTTGATGT
TCAGGCCCTATTGCTTGAATACATAAAAACAAATAAACTTCGTGATCCTC
GTCGAAAAAGTCAAATCATTTGTGATGCTAGGCTTGAAAATATATTTGGA
AAAGCTCGTGTGGGACATTTTGAAATGTTAAAACTTCTTGAATCTCACTT
TTTAATGAAGGAGGATACACAGATAGATGATGTTCAAGGTAGTGTTGTTG
ATACTGAAACCAACCATGTTGATGCTGATGGGAACATTGAATGTGTGATA
AAAAGTGGGAAGGATAGGAAACGTAAAACACGGAAGAAAGATGGCCGGGA
ACGTCAATCTAATCTTGATGATTATGCTGCCATTGATATTCATAACATTA
GCTTAATATACCTAAGAAGGAAGTTGATGGAGGATCTACTGGAAGATATT
GAAACCTTTAGTGACAAGGTGGTTGATACTTTTGTGAGGATAAGAATTTC
TGGTAGTAATCAGAAGCAAGACATATATAGGCTAGTCCAAGTCAAAGGTG
ATTTTTTTCACTATTTTCTTAGACTTTGTGCAGGGTGTGCACATGATATC
GTCATTAAGGGGCAAAATAAATTTTTTGCAATGCAGGTACGACCAAAGTA
GACGACTTCTATAAAGTTGGCAAGCGGACAACTAATCTGATGATAGAAAT
TTTAAATCTTAACAAGAAGGAGGTTATATCGATTGATAGCATTTCAAATC
AGGAGTTCACGGAGGTAAGCATACTGAGAAGAATATAATGCTAACCAACT
TATTTAAGTTGTTTGTATGCTGGTTTAATGATAATGCATCATTTTCCCTT
TCTTTTTTGTATATAAATGTTATGTATTACAATGTTACCCATTACATGAT
TTACTGTTAGACAATGTATGAAGAGGCTCCCTACTCTGACGTTTTTTTTT
ATATATATTGAACCATGTTAATAAAGGTGGCACTTATTTCGAAAAGAAAA
TAATGATCTGTAAAGTTCTTTTTGTTATATTATGGATTATGATTATGTTA
GCATACACGTGGTGTATTTTAAGCCAATTAGCTGATGTGTATCATTCTTT
GTTCTCCAGGACGAATGCAAACGTTTACGCCAGAGTATAAAGTGTGGGTT
CATCGCGCCCATGACGGTGGTAATTATGCACACCAAATTTTCTTTAACTT
TAAATTCAATACATGCATTCGGCTTATTCTTGTGACACATTTTATGTTTG
CTTGTAGGGTGCCATTCAAGACAAGGCCATGGAAGTCCAGGTTGCAAGAG
TAAATGATGTAAGTGTTGCTCATGAGAACTAATAGTTAATGTGATGGTTA
TGTCACTTGTGTGTCTGATATTAGTTTTGGGTTTTGGGCTGTGAGTGAAA
ACTATGTACATTAAGTTAGCAGCTTGAAAAAAAGAATTCCTCGTTGTAGG
AATTATCCAATTAAATTATATTTCCTATTTAGGACACTGACTCCTGTAGC
AGCCTGTTATCACATACTTCTTCTATGAAAATATGCTTTCGTATTAACTT
AAAAGCTTGAACTGTTAGCTCATTGTTTGTGGCCCTAATTCCTGTTCTTA
TTATGTTCCTTTATATTTGATGTTTATTTTTTAATTTTAAGATGAAGCAT
AGAATGTAATTGGGTTTCCAATATTCTTTATGCACCGAGATTTTATCCTT
GATTTATTTATCACGTTGTTTTTAAAATTTGAATATGCACATCTTAAATG
CGTAAATTAGAGCACATTATGGCTGAACGGCTTAAAAGTTAAGTTGTACT
CCCTTTGTCCCTGTTTAGTTGTCCCTTTTGACAAAAATAAAGTCCCTGAA
CAGTTGTCCTTCACATATTTCGGTACAATTTTTTACAATTTTTTTCCAAA
ACAACCCCTACATTTCTGTTGTCTATGTTTGACTATACAACTAATTATAC
ATTCCTAAGCTATCATTTAATTCAATAATTAGGGGCAACTATGGAAACAA
GTCATGTATTAAATTTTTCCTAAAATGTGTGATTTCCTAAAACGTAACAA
CTAAGTAGGGACGGAGGAGGGAGTATCAGGAATTACAAATCTCCTCATGT
ATCGAAGTCCTTATTCAAATGGACGCACTATTGGTAATGACACAGGGTTA
TTCCGGTTTGTCATAGCTTCGATATTATATCTTTCCCTTGTATGAATGTC
GTGGAACGCTCTACCACATGTTCCCCTGTCTCTTTAGGTTTGCTATGTGA
TCTTAGGATCTGTTATATTCTTCGTTCCGAACTATTGTATATTGGTACCT
TGTGAATATAGTAGTAGGTTTTTGCTTTGTTTTAAGATAAAAGTGATTGG
TTGATGTGTAACCGGCTTTGATCCCATGGTTCATTATATATTGTTTTATA
AAGATTAGTGATTTTGATGATATTATAAACATGTCGATGAGCTCTTTAAT
TCCAGACTAATTTGATTGGCTTTTGAACTGAGAAGTGGTCAAGTGATATA
GTCTGTGCAGTCAGCAATAACGCGTTAAACTTGTTAAGATCTAGCTCAAG
TTTCACATGTTAACAAGCTCAACTCTCATGAAGACTAACTTCTGGTGGAA
AGAGAATTGGTAATGGGTCCTATGGTAGTTTAGGTTTTAAACCAAACTTA
AGTACCATTTAATTCAGGTTCGAATCGGATACCTAGAAATGAAAATGGAA
CCTGAACCACTGGGTTTTGATTTAGGTTTAAACTGGATACCTCCCCAAAA
TTTATTACAAATCAAATAACCAATTTATCTGAAGTATAGTAACAGAATCG
GAAATATGGTAACAGAACAGAATTACTAAATTTTCTCAATTTTAGATATT
TAAACTTGGAATTAAGGAAGGTAAAAGGAAAAATAATACATCATGTTATA
TCCATACGAGTATATTATTGAAGCCGAAATATTAAAGGTTTGGTATTCGG
TCAGTCTGTCGGTAATTATGCCGGATTAGTTTGTTGGTGATCGGGGTAAT
TAGCTGGATTAGTCGGTCGGTAATTGGGTCTAATTAAAATAGTGATGATA
AAAATATAACATTGTTTAGTTTTTTTTACAGTATTCCAGTAAAAAAACAT
GGGCTTTAAGTAATAAAGATGAGTTACAACTTAAGTATAACTAATATTTT
ATATATGCTCAATGCTCAATCCAATTGAATATTTACTTTTTGACTTTATT
TGATTAACTCATACCACATTTATGTATAAGGTGGTGTCAAGTATAATCTC
AACAAATGTATTAGTATTGTATAAAGTACAGATATTGTTGATAATTATTA
ATAGAATTAATTTGGTCACATTTGGTGATGATTCACATTTAAATTCTTTT
TAAATTTTCCGTATTTAATTTTTACACTGAAATTGAGTTGCCTACATCAA
ACAAAATATGTTGGTGATTATAAATGGTGTCAAATATATTGAACTAAATA
TTTATAATGTTTGTAGTTTTTAACTCATTTAGTATATAAACTTATGTAAA
CTGTAAAGACATTACTATTAAGAAGTTGATCTGTAAAGTGTTGCACTTGT
GTTTGAAACTAAAATTTGAGTTATATATAGATTTATCTAGATAATTATCT
TACTAGTGTATTTGTTTTACAAATTATGTGATAGTTATCGTATGTATGGA
TGTATATTATACATTAAAGAGTAAGCTCACTTATGTGTGTTATCAAAGAA
TAATGTGTGTCATTTCATACCTTACTTAAAATTTTAGGAAAATATGGACG
CATCCAAAAAGGACAAAGAGGTGATAATATGGCATTTTCAACCTTCATTG
TGTATATATATGTTCTTACTCCCCTTCCTCCACTATATGCCCATTTAGTG
TAGTATATCAGAAATTGATTTCATGTTTCCTGGATTACAATCGATGTAAT
TTTCTTTGCCCTTTTCACGCGAAAGGTTCTAAAATAGCCAAATTTTGCTT
AGATATATAAAACCTAGAGGTGCATTCGAGTTGCTTAACGGAATGCTGAC
AATTGCCCGTGTGTCATATAGTTTCTTTGTCCTTGTCTTAAAAACAATTC
GTTGTCAAAGCTGTATACGAGAACAATATTTCTGTCTTTACATATTGCTT
GCCATGCATTAATATCAGGATTTTAATAAACAGATGGAAGTTACTTATCT
TATCACAGGGGTGTGTTTAGAGGAACATGATACTAGAAGCATTTACCTTT
TTTTCTTTTGGTTAGAATTAGGAGTGAGATTAGAACTAAGGTTTTTCACA
TAATCAGTCCTGTGATAGTTATCCGGGAGGCTCGAGTTAATTGATCAATA
AGCACAACAGTCTACTTTTTTTGGAGTTACTATTGCCCTTGCCAGTGTTC
TTGTTTTGTGCTGTGTTATGAATTTGTAAGTTTTTTATTTTCAAGAGATA
AAATGATGTTTGTTTAATTTATAAAGTAAGAAATTTTGTGGATTCAAATA
CATCTCATCTTCTAAAATTAGTGCGGGTTTAGATATCTTTGAACTCCTAA
ATGATATAACTGAAGTACAAGTTTCTTCGTTGCTTGATTTTTGCTGTTGG
GAGTTGGGACTGCTTGTATACCCATGATGAATATTTTATTCTCTTTGTTG
ATTCTAGTTTCAGCCTGATAGTTACTCTTGTTAAATTATATATAGTACAG
ATATCTACTAATAGAAATTATGTATGAGGCAGTATCTTTATTTAATATAA
TTTCTTACTGTCTACTTGTCTTGAACCGGTAATACCTAAATGCTGAGTTC
AATACAGGGATCTTCGCCTGAAAATTTAGCATCTTATAAAATCATGCCTT
TTGACTTTTCAGTTATCTTTTCAGTTATAATGTTTTAACACTTTATACAT
AAAACTGCTCCTGTATGTGTTATTTATCATGCTCAATTATTGTGATGCAG
TGGCTTGAATCAGAAGTACAGCGGCTTACTCATCTTCGTGATAGAGCAAG
CGATTTAGGCAAAAAGAAGCAATATCCTTTGCTGTCATTTTTTTTCCTTC
TGCAGTTTCAGTTCTCTGTAGAATGTCGTATAATCAACTTGTGGTGTAGG
GCATAAAATTTTTCTTAAAAAAAGTTTTTGGTAACCCGAAGAGAAGGGAT
TCAGTAAAGACAAATTATTTTAGTAGTAAAACTTCACATCGTTGGTTGTT
AGTGTCATTGTATCTTCCTGTGTGGACCATATTTGAACTGTTGTAACTTG
TGATCCTTAACTGAATATTACACTCAGAGAGTGTGTAGAGAGTTTACAGC
TTCTGAGGACCCCTGAAGAGCGTAGGCGTAGACTAGAAGATATTCCTGAG
ATACATGCAGACCCAAAGATGGACCCTGAATTTGTGTCGGAAGATAATGA
TAGTGAAATTGACAGTAGTAAACAAGGTTTGGTCTTCACTTGGTAGTCTG
ATGTGACAATATTATACTGTACTGTTTTGTTAAAAGTTACTTTTTGTTTA
TTTAGAAATATATACGAGGCCCAGAGGTTCTGGGTTTAGCAGGAGAGGAA
GGGAGCCCATATCTCCTGGAAGTGGTGATGCGAAAGAATCCTGGACTGGT
AGCAGGAGAAGTTCTGGTAAAGGTTGGGAACTTAACAGAAATTTGTCGGA
TAAGAATCTTGCAAATACAGTTGAAGATGCTCCTCTTAGTATTGGAGTAT
CTGCTGATAACTCATGGAATAATGGTAGAGGCAGCGAGACAGAAAAACCT
ATTATATTGGAGAAGCCAAATTCAGTTACAAGTTCTGAAGCTTTTGGATT
TAATAGAAATTCTGCTGCTAGATCTGATTCATCCTCTCATGTACAATCAC
AAAAGTCTCCTGCATCTTTGCTTGCTCCAGTTGCTACAGCTCCATTGAAC
ATCAGTGAAATAGACAAGATATGGCATTACCAGGATCCACATGGAAAAGT
TCAAGGCCCGTTTTCTATGGCTCAGTTACGTAAATGGAGCAATACCGGAT
ACTTTCCCTCTGATCTCAGAATATGGAGTAGTTCTGGAAATAAAGATGAT
TCTTTGCTTTTGACTGATGCATTGGCTGGGAAGTTTCAAAAGCTGCTCCC
AGACAATGGGATTCCAAATAGTAATAACCTGCATAATCCTCATCTCCCAC
CCTTGCACTCTTTACATCAAGGGCGGGAGGTTCAAGATGCCGAGAAATTG
AACTCTGATCAGAACCATTTTACCATGGATTCAAATATTAATTCAGCATC
AAGGAATTGGGCTGCTCATTCAGTTGAGATCCCACTACTTTCTGCAGACG
GGACAAATTCTAATCATAATGGCAGAAACAATTTGGTAAATCTCCCTTCC
CCTACCCCAAAACAAAGGTCTTCTGGGGAAGCGGGCCGTCCTATTGGTGG
CGTCTCTCTACCTGGTAGCATTGAAGCCTTGCAGTCACCTGCGGCAGCTA
CCCCAGATAGTACCAGGAACTTGATGCTGGCATCTGAGAAAACTCCTTCA
ATTTCTCATCCTGCTTTTGGGGCATCACCTAACCCTGAACAGGGTAATCT
TCTAGGCTCAACTATATCTCTTCCAAATCCTCAGTCAACTGTGGCTTCAT
TGCATGGAGGGCAGAATGTCAGCCATCCGTTTATTGCACCTGAAACTAAT
GCTAATATCGTGCAGTCTGTCACTGCTAACAACCCTGCACTTGGAACGCA
GAATTGGGCTGGTGCCCCTACCCAGAGTTTGGAAGCAAATTCTTCGATTC
AAGCATCCACCCAACAGCCGGTGTACGCTCAGTGGAGTGGGGTTCAATCA
ACTCCTGTGCAGAATCCATCTATAAATTTTCCAGTGCAAGGTGTCCCGCA
GGTACCAAACTCCTGGAGGCCTCCAATGCAAACTAATCAAACTAACATGC
AGCCTAATGTCCAGTGGGGAACGGGAATTGCAGACAACAGTGCTTCTCAG
AACTTGCAACCTGATAATCCAAATTCTGGTTGGGCTTCAATGCAAGTAAG
TCCGAATATAGGATGGTCAGGACCTAATCCAAACATGAACTGGATGGCTA
GTGTTCAAGGGGCACAACCTGGGAATCTGAATGCCGGCTGGGTTATACCC
GGTGGAAGTTCAGGAGTTGGTTTTCAAGGGGCAGTTCCTGGAAACATAAA
TTCAGGTTGGGTTCCTCAACCTGGCAATGCCGTTGGCGTTGTACAAATGC
TTGGTCCGATGAATGCAAATCAAGGCTGGTATTCAAATATGGCAGCCAGC
ACTCAAGGTGCAGCCCCTGGAAACGGAAATGCAGGTTTGGCGGCACCCAT
CTCGAATCTAGGATCTAATGTTCAGGGACAAATGCCAGGAAATGCAAATA
CAGGCTGGTCAGCACCATCAGGAAATGCAAATCAGGGTTGGGGCCCGCTA
GCAGGGAATCAAGGGAACAACAGAAGCCAGCACCATCGCATTGGTGATAA
GTTCTCTAGTCAAAAGGATCAGGGTTCTCAACCAGGTAGAAATTGGAACA
AGCCGTCATCATTTGGAGGTGGAGGTGGAGGTCCTAGACATGGCGGCTCT
AGAGGAATATGCTATATGTTCCAGGACACAGGGCATTGCAAGAGAGGAGA
TTCTTGCAGTTTCCGGCACTCATTATGA

Sequence Length:

12578

Sequence Checksum:

a0a9632bedd92f8eda5fb3b790835874

View location in JBrowse:

DCARv2_Chr6:3832883..3845460+

Cds:

>DCAR_022912cds ATGGAGGAAAACGATGATAATCTATCCAATAAATCTCGGCTTATTGATAT TGATGATACAGTAGATACGCTAGAGCCCAAAGAATGCGATGTGGCTGGTG AAAAAAGCAGCGATTTTGAGTGTGTTGGTCGTGAAATTGAAGAAGCTGAG GCTTCGATTCCTGTGACCGAATCGGAAAATCTGTCTGAGAATTGTGTGGA GCTGGAAATTGATGGTAAGTTTAGTGACGGCGTGGAGGTGGAAGCCGGGG AATTGGAAAGGAAGGATGAGTTGAGTGGTGAAATAGAGGTTAGTGGGGTC GGTGTGGATGCGAGTGGAATTGAGGTAAGAGATGATAAGGATGATGAAAT TGAGGGAGAAGTTTTGTATGATACTGTGCGAGGAGATGATAAGAATGATG AATTAGAGGGAGAAGTTGTGGCGGAGAAGAAAGATGAATTACAGGGTAAT TATGGGTGTCAGGTTGCGAAAGAGGGGGAGGTAGAAGGTAATGGTGTCGA CGAGGGAGAGATATTGGGGGATAATGATCAGGTGGAAGATAAAGATGTTT GTGAGGATGGTTTTGACGATAAGCAAAATGTTTGCGTGCAGGTAGTGGCG GAAAAGAAAGATGAATTGGAGGTTGAAGGTGGTATGAATGTGGGAGAAGA AGCGGGGGATAAAGTTGTGCCCGAGAGTGAGATAAAAGATGAGGCTGGGG TTGAATTACAGGCAGGGGCTGTATGTGAGGAAGTGAAAGCGGAGGAGCTT AAAGGTGATTGCGGAACTGAGGTAGTCGGGGAAGCTCTGTGTGAGGTTGG CAATGAGGCTGAGAACAAAAGTGAGATTGAGACTGAGATGAAAGTGAGTC GGGAGCCTGTTAAGAATGTTGATGATATGGTGGAGGAGGAGAAAGTGGAA ATGGGATATGTCTCGAGTCAGTCTCTGAATGAAGTGGAGGAAAGGGCTGC TAATATTGAGGATAATGCAGAACATAGTTCCGGTTTAATTGGTCTTGCCG AAGATACAGTCATGGAGGAAAAGAATTTGGTAATGGAAAGTGTAAACAAG AAAAGAGATGATGAGTTGGATTCTGCTCCAGAGTCTGATGATGAAGAAGA TATAATGGAAACTGGAAGAGAATACGATGAGGATAAATTTGAAGGAGAGG TTCCTCAACCAGATGGTGATTCACAGTTGGCTGAAGATGAAGAAGATATA ATGGAAACTGAAAGAGAATTTGATGAGGATAAATTTGAAGGAGAGGTTCC TCAACCAGATGGCGATTCACAGTTGGCTGAAGATGAAGAAGATGAAAGAT TGGTGGGGGACGAGGAGATTCCCGCTGCCGATGTTGAAATGGAAACAGAA ACTGATGCAGGTGAATTAGTGAAGATCAGTGGAGGGAAGCGGAAGAGAGG AAAGAATACAAAAGCTGCAGGAAAAGCTCAACCACTCAATATGGTCGGAC TTCCGGTTGAGGAGGAGGATGTTTGTTTTGTTTGCTTTGATGGTGGAGAC CTCGTGCTGTGCGACCGAAAGAACTGCCCTAAAGCATACCATGCTTCTTG TGTTAATCGTAATGAGAAATTCTTTCAAGCCAAGGGTCGTTGGAATTGTG GATGTATTAAGGATGCAGTCATATTATGTGTTAGAGGAAACAAAGGCTTT TGCGAAGCTTGCATTAAAATTGTGATGATGATTGAAGATAATGCACAAGG AAGTCAGGCACAAATTGATTTTGATGACAAGTCTAGCTGGGAGTACCTCT TCAAGGATTACTGGATAGATCTTAAAGAAAGTCTGTCTATTTCTCCAGTT GAAATTGCTAAGGCTAAAAACCCATGGAAAGGATCTGCTTTAGGGGCTAG CAAAAATGAGTCTCCTGGGGAGCAGCTTGACACAAAGGATGATGTTGGTG TTGGAACTGATAATGCCTCTGATAATCCTGAAGCGAGTAAGCCTAAAAAA AGAAAGTACAGTAAACGTCTAAAGTCTCGTGCTACTAAGCAAGATGAGTC GACAAGTGAAGCAATAACAGCTGGCGCGGAAAGAAAGTCTACACCTAAAA GCACCGAATGGGCATCAAAAGAGCTTTTAGAATTTGTTATGCACATGAGA GATGGGGATAGAACTGTTCTATCTCAGTTTGATGTTCAGGCCCTATTGCT TGAATACATAAAAACAAATAAACTTCGTGATCCTCGTCGAAAAAGTCAAA TCATTTGTGATGCTAGGCTTGAAAATATATTTGGAAAAGCTCGTGTGGGA CATTTTGAAATGTTAAAACTTCTTGAATCTCACTTTTTAATGAAGGAGGA TACACAGATAGATGATGTTCAAGGTAGTGTTGTTGATACTGAAACCAACC ATGTTGATGCTGATGGGAACATTGAATGTGTGATAAAAAGTGGGAAGGAT AGGAAACGTAAAACACGGAAGAAAGATGGCCGGGAACGTCAATCTAATCT TGATGATTATGCTGCCATTGATATTCATAACATTAGCTTAATATACCTAA GAAGGAAGTTGATGGAGGATCTACTGGAAGATATTGAAACCTTTAGTGAC AAGGTGGTTGATACTTTTGTGAGGATAAGAATTTCTGGTAGTAATCAGAA GCAAGACATATATAGGCTAGTCCAAGTCAAAGGTACGACCAAAGTAGACG ACTTCTATAAAGTTGGCAAGCGGACAACTAATCTGATGATAGAAATTTTA AATCTTAACAAGAAGGAGGTTATATCGATTGATAGCATTTCAAATCAGGA GTTCACGGAGGACGAATGCAAACGTTTACGCCAGAGTATAAAGTGTGGGT TCATCGCGCCCATGACGGTGGGTGCCATTCAAGACAAGGCCATGGAAGTC CAGGTTGCAAGAGTAAATGATTGGCTTGAATCAGAAGTACAGCGGCTTAC TCATCTTCGTGATAGAGCAAGCGATTTAGGCAAAAAGAAGCAATATCCTT TGCTAGAGTGTGTAGAGAGTTTACAGCTTCTGAGGACCCCTGAAGAGCGT AGGCGTAGACTAGAAGATATTCCTGAGATACATGCAGACCCAAAGATGGA CCCTGAATTTGTGTCGGAAGATAATGATAGTGAAATTGACAGTAGTAAAC AAGAAATATATACGAGGCCCAGAGGTTCTGGGTTTAGCAGGAGAGGAAGG GAGCCCATATCTCCTGGAAGTGGTGATGCGAAAGAATCCTGGACTGGTAG CAGGAGAAGTTCTGGTAAAGGTTGGGAACTTAACAGAAATTTGTCGGATA AGAATCTTGCAAATACAGTTGAAGATGCTCCTCTTAGTATTGGAGTATCT GCTGATAACTCATGGAATAATGGTAGAGGCAGCGAGACAGAAAAACCTAT TATATTGGAGAAGCCAAATTCAGTTACAAGTTCTGAAGCTTTTGGATTTA ATAGAAATTCTGCTGCTAGATCTGATTCATCCTCTCATGTACAATCACAA AAGTCTCCTGCATCTTTGCTTGCTCCAGTTGCTACAGCTCCATTGAACAT CAGTGAAATAGACAAGATATGGCATTACCAGGATCCACATGGAAAAGTTC AAGGCCCGTTTTCTATGGCTCAGTTACGTAAATGGAGCAATACCGGATAC TTTCCCTCTGATCTCAGAATATGGAGTAGTTCTGGAAATAAAGATGATTC TTTGCTTTTGACTGATGCATTGGCTGGGAAGTTTCAAAAGCTGCTCCCAG ACAATGGGATTCCAAATAGTAATAACCTGCATAATCCTCATCTCCCACCC TTGCACTCTTTACATCAAGGGCGGGAGGTTCAAGATGCCGAGAAATTGAA CTCTGATCAGAACCATTTTACCATGGATTCAAATATTAATTCAGCATCAA GGAATTGGGCTGCTCATTCAGTTGAGATCCCACTACTTTCTGCAGACGGG ACAAATTCTAATCATAATGGCAGAAACAATTTGGTAAATCTCCCTTCCCC TACCCCAAAACAAAGGTCTTCTGGGGAAGCGGGCCGTCCTATTGGTGGCG TCTCTCTACCTGGTAGCATTGAAGCCTTGCAGTCACCTGCGGCAGCTACC CCAGATAGTACCAGGAACTTGATGCTGGCATCTGAGAAAACTCCTTCAAT TTCTCATCCTGCTTTTGGGGCATCACCTAACCCTGAACAGGGTAATCTTC TAGGCTCAACTATATCTCTTCCAAATCCTCAGTCAACTGTGGCTTCATTG CATGGAGGGCAGAATGTCAGCCATCCGTTTATTGCACCTGAAACTAATGC TAATATCGTGCAGTCTGTCACTGCTAACAACCCTGCACTTGGAACGCAGA ATTGGGCTGGTGCCCCTACCCAGAGTTTGGAAGCAAATTCTTCGATTCAA GCATCCACCCAACAGCCGGTGTACGCTCAGTGGAGTGGGGTTCAATCAAC TCCTGTGCAGAATCCATCTATAAATTTTCCAGTGCAAGGTGTCCCGCAGG TACCAAACTCCTGGAGGCCTCCAATGCAAACTAATCAAACTAACATGCAG CCTAATGTCCAGTGGGGAACGGGAATTGCAGACAACAGTGCTTCTCAGAA CTTGCAACCTGATAATCCAAATTCTGGTTGGGCTTCAATGCAAGTAAGTC CGAATATAGGATGGTCAGGACCTAATCCAAACATGAACTGGATGGCTAGT GTTCAAGGGGCACAACCTGGGAATCTGAATGCCGGCTGGGTTATACCCGG TGGAAGTTCAGGAGTTGGTTTTCAAGGGGCAGTTCCTGGAAACATAAATT CAGGTTGGGTTCCTCAACCTGGCAATGCCGTTGGCGTTGTACAAATGCTT GGTCCGATGAATGCAAATCAAGGCTGGTATTCAAATATGGCAGCCAGCAC TCAAGGTGCAGCCCCTGGAAACGGAAATGCAGGTTTGGCGGCACCCATCT CGAATCTAGGATCTAATGTTCAGGGACAAATGCCAGGAAATGCAAATACA GGCTGGTCAGCACCATCAGGAAATGCAAATCAGGGTTGGGGCCCGCTAGC AGGGAATCAAGGGAACAACAGAAGCCAGCACCATCGCATTGGTGATAAGT TCTCTAGTCAAAAGGATCAGGGTTCTCAACCAGGTAGAAATTGGAACAAG CCGTCATCATTTGGAGGTGGAGGTGGAGGTCCTAGACATGGCGGCTCTAG AGGAATATGCTATATGTTCCAGGACACAGGGCATTGCAAGAGAGGAGATT CTTGCAGTTTCCGGCACTCATTATGA

Pep:

>DCAR_022912pep MEENDDNLSNKSRLIDIDDTVDTLEPKECDVAGEKSSDFECVGREIEEAE ASIPVTESENLSENCVELEIDGKFSDGVEVEAGELERKDELSGEIEVSGV GVDASGIEVRDDKDDEIEGEVLYDTVRGDDKNDELEGEVVAEKKDELQGN YGCQVAKEGEVEGNGVDEGEILGDNDQVEDKDVCEDGFDDKQNVCVQVVA EKKDELEVEGGMNVGEEAGDKVVPESEIKDEAGVELQAGAVCEEVKAEEL KGDCGTEVVGEALCEVGNEAENKSEIETEMKVSREPVKNVDDMVEEEKVE MGYVSSQSLNEVEERAANIEDNAEHSSGLIGLAEDTVMEEKNLVMESVNK KRDDELDSAPESDDEEDIMETGREYDEDKFEGEVPQPDGDSQLAEDEEDI METEREFDEDKFEGEVPQPDGDSQLAEDEEDERLVGDEEIPAADVEMETE TDAGELVKISGGKRKRGKNTKAAGKAQPLNMVGLPVEEEDVCFVCFDGGD LVLCDRKNCPKAYHASCVNRNEKFFQAKGRWNCGCIKDAVILCVRGNKGF CEACIKIVMMIEDNAQGSQAQIDFDDKSSWEYLFKDYWIDLKESLSISPV EIAKAKNPWKGSALGASKNESPGEQLDTKDDVGVGTDNASDNPEASKPKK RKYSKRLKSRATKQDESTSEAITAGAERKSTPKSTEWASKELLEFVMHMR DGDRTVLSQFDVQALLLEYIKTNKLRDPRRKSQIICDARLENIFGKARVG HFEMLKLLESHFLMKEDTQIDDVQGSVVDTETNHVDADGNIECVIKSGKD RKRKTRKKDGRERQSNLDDYAAIDIHNISLIYLRRKLMEDLLEDIETFSD KVVDTFVRIRISGSNQKQDIYRLVQVKGTTKVDDFYKVGKRTTNLMIEIL NLNKKEVISIDSISNQEFTEDECKRLRQSIKCGFIAPMTVGAIQDKAMEV QVARVNDWLESEVQRLTHLRDRASDLGKKKQYPLLECVESLQLLRTPEER RRRLEDIPEIHADPKMDPEFVSEDNDSEIDSSKQEIYTRPRGSGFSRRGR EPISPGSGDAKESWTGSRRSSGKGWELNRNLSDKNLANTVEDAPLSIGVS ADNSWNNGRGSETEKPIILEKPNSVTSSEAFGFNRNSAARSDSSSHVQSQ KSPASLLAPVATAPLNISEIDKIWHYQDPHGKVQGPFSMAQLRKWSNTGY FPSDLRIWSSSGNKDDSLLLTDALAGKFQKLLPDNGIPNSNNLHNPHLPP LHSLHQGREVQDAEKLNSDQNHFTMDSNINSASRNWAAHSVEIPLLSADG TNSNHNGRNNLVNLPSPTPKQRSSGEAGRPIGGVSLPGSIEALQSPAAAT PDSTRNLMLASEKTPSISHPAFGASPNPEQGNLLGSTISLPNPQSTVASL HGGQNVSHPFIAPETNANIVQSVTANNPALGTQNWAGAPTQSLEANSSIQ ASTQQPVYAQWSGVQSTPVQNPSINFPVQGVPQVPNSWRPPMQTNQTNMQ PNVQWGTGIADNSASQNLQPDNPNSGWASMQVSPNIGWSGPNPNMNWMAS VQGAQPGNLNAGWVIPGGSSGVGFQGAVPGNINSGWVPQPGNAVGVVQML GPMNANQGWYSNMAASTQGAAPGNGNAGLAAPISNLGSNVQGQMPGNANT GWSAPSGNANQGWGPLAGNQGNNRSQHHRIGDKFSSQKDQGSQPGRNWNK PSSFGGGGGGPRHGGSRGICYMFQDTGHCKRGDSCSFRHSL*