Resource Type:
Gene
Organism:
Name:
DCAR_022673
Identifier:
DCAR_022673.gene
Locus Tag:
DCAR_022673
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_022673, is a part of gene, DCAR_022673. |
| The genetic_marker, MK004418 K1862, is adjacent to gene, DCAR_022673. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_022673 | DCAR_022673.mRNA | mRNA | DCARv2_Chr6:8697306..8712059 |
Sequence:
TTCATCAGGTTGCAAAGTGCTAGTGCAAAATTGCTGGTGTTTTGAATAAA
CTACTGGAAACTGCAACACAAACCCAATGACTGTTATCATTTATATTATG
GGATAGTAATCTTATCTGATATCATTCCGGGCTTGTTTAAGTTTTCCTAC
ATATGTCGCAGCTGTCAGAGCTCGTTAATGTGGAGGGCTATAGTGATTGG
ATACAGTTGGTAGCAGAATTTACACTGAAATCCTTGCACTCTTGGCAGGT
AAAGTTATTTTCTTGATTCTATTAGTGCGTGCACACATACATATGTATCT
AGCTATATTTTTATTGTCTGGAACTGGAATTGAAGCAGGATTATGTGACC
CTTTTGTTCATCTTACAAGAGGATAAGCACTCTTTCGAAACTAGTTTTTC
ACCCATTTAGTTCATGTGCTCATTCAGTTACTTGTCATGAAATATTCAGT
GGGCCAGCAGCAGTGTCTACTACCTTTTAGGTCTTTGGTCTAGGTTGGTG
ACTTCTGTGCCATATCTGAAAGGTGATGCCCCCAGTTTGCTTGATGAATT
TGTTCCCAAAATCATTGAAGGTTTCATCACATCAAGATTTGACTCTGTCC
AGGTAATTTGGCATTCTTATCTCTGAGTTATTCTAGAATATTGATCGTAA
TATACATACACATACTTATGTGCATGTGTATTTTTTACTTGAATGTAATT
TATCTCACACCTGTATAGGCGGGATTCCCACATGACCCTTCTGAGAATCC
CTTGGACAATGTTGAGCTTCTTCAAGATCAACTTGATTGCTTTCCTTACC
TTTGCCGGTTTCAGGTAAAATGCAAATATATGATATATGTGATGATGAGA
AAGAAAAGGCCAATGAATTGAGTATTGAACTATTGGTTATGACCAATGTG
CTTTTCCTTGCAAGTCTGTCAATTTAACTGTTCAATGATTTGATTTCTCT
CTCCCAACTGGCAGTATGAAAGCAGCAGCTTGTATATTATCAGTGTTGTG
GAGCCTATTCTGCATGTATTTTCGGTATGCTAATTTCTGTGATAGGGAGC
ACTTGTCATTCATTAAATATACATAAAATTGATCAAAGTCATCAATAGGA
AAGAGCAAAACTTCCGTTAGGAGATCCGAATGACTTGTCCGTGATTGAAG
CTAAGCTTACTTGGATTGTCCACATTATCGCTGCTATTCTAAAAATCAAA
CAGTGTACTGGTTGTAGGTGAGTAGCGCAGCCTCTTTATGTGGAGAACTG
TTATTTTGGTGGTATAAGTCTTTAATAATCAGTTTTCTTTGTCATGCAGT
ACTGAGTCCCAAGAAGTAATCGATGCAGAACTTTCAGCTCGAGTTTTGCG
CTTGATCAGTGCCACTGATAGTGGGTTACACAGTTTGGTAGGCTAGTTTG
AAATACAGCTTCTTTTCTATGAAATAATAGATGCATGATAATATGACATA
AACATTGATATTCTATTTAAGACCACTTTTTAATTTTTAATTTTTCTTTG
TATTTAAAACATGATAATGGCAATTATGGTGGCTATTAATGCAAATCTCC
TTCCCTTCCCTGTTCATGGGGCCATTAAAATGATTGAGTTACTTGCTTAA
AGTTTAAGGATAAATTATGACAAATTCCTACTGTTGCATGAAAAATTATG
TAATCGACTGAAGGAAGAAAAACTGGGAGAGTAGTGCATTGTGTCGCTGA
TGCGGTATGCTCGTAAACATTGCAAACTGAACATCAAGAGTAAAATAAAG
CTCGTAACCATTGCAAACTGATCACCAAGAGTAAAATAAAGATGGGAATG
CCATGAAAATAATTATCTGAAAAATTGAATGCAAGAAGTGGTCTGCAATA
TTATCATCTAAGGATAGCTTTAAGCCCATAAATTAACCTTATTCATATAA
AAAACATCCTACTCTCCCATGATACAAGAATCAGAAAAATGAAGTCGTGA
CATAATTGGTTAGAACATTCTTATGAATATAGTTGTATAATGTGAGCTTT
GCAGATCTTAACTCCTATGTCAGTATTTCCTAGTTATCTCGCAGGATATT
ATATTAATCTTCAAAGTGCCAAGCTTCCTGTTATGCTTTCAGACTGTTCT
CATTAGGAAATTTTGTATCTTTTGTTTTTGCTATTTGCCTATTACTATAA
GTAAAAGATTTTTTTTTTTTTTTGTATTATGCTTTGTGTTTACGTTTCTC
AATCTACTCAAAAATTTCTTTCTAATACTTATAATATTGCATTTTATGTA
TGTGATTTTGGTGCAGAGATATGGTGAATTAAGCAAGCAAAGACTTGATC
GTGCCATTTTAACTTTCTTTCAGCATTTTAGAAAGTCTTATGTCGGTGAT
CAGGCCATGCATTCGTCCAAGGTACATCATGTGTGCGTGTCTGTGTATCT
TTGTGATGTTTAATATCAAGGAAGGAAAATAGTAGTATTGTTGGAAGATT
TCTCTGGTATTCAAGTTGGTGCGTTTGGTGTAGGATAAAAAGATTGTGTG
CAGGACCATAGTCTCAGTTTGTCTCTTCTTAGGCTAGGTAGTGTTTATAA
GTCTGTATGGTTCTTAGAAAGTGCCATGCATATTGATAAATGAAATGAGA
GCCTGGGACTACTTTATTTCTTAAATATATTTGCTCCAACTCTATCTATA
CTCTCTAGTGTTACTTTTCCCCAAGCTTTCCTCTCTGCTTCCTTGTAACT
CTTGCTACTGAAGGGTCTGTCCTTACATCTGTGCACATTAAATATATCTC
CTGTTGTTGCAGCAGTTATATGCCCGATTGTCCGAGCTTCTTGGACTTCA
TGATCATCTTTTATTACTAAATGTGATCGTCGGAAAAATTGCTACAAACC
TCAAGTGCTATACAGAGGTGACGTTTCTGTTGTTGCTTGTATACAATTTT
TTTTCATTCGGGCTATGACTGGCCTTATGCTAGGTATAGTTTTGGTGAAG
TGCTGTGTATTAATTTTGTATGTGAATATGTTCACATGCAGAGTGAGGAT
GTAATTGATCACACCTTGAGTCTGTTCTTCGAATTGGCATCTGGGTTTGT
TAATAAATTTTGTTTTTGGTGAAACTTTGAGTTGTCTTGTAATCTGTAGC
TGGTTTAATAATCACACTTTTTAATGCAGATATATGACTGGAAAACTGCT
TCTGAAGTTGGATACTGTCAAATTTATTATTGCAAATCATACTGTAATTT
CTTATCTGCTTGTCAAGAATTCATTATAATATCAATATCATTTTGAATTT
TTGTGTACCTCTGCTCAAAGATATTTTAAACTAATTTGATTTGCAGAGTG
AGCACTTCCCCTTCTTGGTAGAGTATAGATGCTCCCGCAGCAGAACAACT
TTCTTCTACACTATCGGGTGGTTAATATTTACAGAAGACAGTGCTGTCAA
ATTCAAGTCTGCAATGGAACCATTTTTACGGGTAGCATCTTCTGTCCTTA
CCTATTTTAATATTTCAAATGAATTTGTATTTTGTGTAGACATAAGGTTT
CAGATAAATTACTTTTTCTATAATTCTTTAAATCAATTGCATATATTTTG
TTGTAGAAAGTGTGAATTGGCCTAGCCGAAAGAAGTCACTTACGTTACCT
AACCAAACAAAATACAGAATTCAATATTAAGGAAAAAACTCGCTTAAGGT
AGGGAATATTGTTCCGACTTCTGGTGGATATGAACATTTTATGAATTTAA
ATTAAATAAGTAGTTTGTTGTATCAGTGTCCACTGTAATGTTACTGGTGC
GAAGGAAGGCATTGTGGAATCTTGTTCCCTGATAACTGGCTATATATTAT
TAAAGATAAATATAGTATAAATAGACAGACATAAGAAACATTGAAGTCAG
AATATTATACCCAGTTAACAAGTAACAAGTTTGAGTAACTGCAAATCTTT
TGTTGATGCATGTACTATTATAAAATTTTGCAGTGCCATAAAAACTTCAG
TAGTAATACACAGTTTTCAGGCCCTCCGGTCTCCATATATGATTCCACTG
ATCCTAAATTATTAGAACTCGACTTGTGGTACAACTGAAACCGGCACCCT
TACCTTTATAGCTTTACCCATAGCCAGTGCCAGCCACATACCATATTTTG
ACTCAACCTGAAGTCCTGAACTCGTCCGCAGTAGTATCTTAAAACAAACT
CACTGAATCTATGACAAGACTGAATATATAATATAATATTAAAATTAGAG
GCACAGTTATATTACCTTACTTAGAGCATCTTTAACGGGGTTGGCTAAAA
TTTGACTTGTAGGTCATTATATGAAATTTGTTGAACATGTAAGACATTGT
GCTTTGATGGTATTTGCTATATTGGTTGGCTCTATTTAAAAAATAGTATG
TTATTAATATTTTAGGTTGTTATAAATAGAAAATATCACTTCAATATGGT
AATAAATATTATAGAATCTTCTTACAGATTTCTTAACGTCTGCAGAGGTT
CGACAAATATAGCCAGCATTAGGAGGTTGGCTATATTTGTAGATAAGGGG
AATGTACCATTGGAGTTGGGTTTTTTTTTAACATAATCCCTATATTTTTT
GTTTATACTATGTATGAATGATTTTTAGTTAAGGGTTCTATGCTCTTACT
ATACTTCATAATTTCTATATATATAACTTACACACACACACACTATATTA
CCATACCAAAACATGCAAAATATATTATAAATTTAAACACATATAAAGAA
ATATTAATTATTAAGCGCATGGGTTATAGGGTAGTATATATATGTATATA
TATAGAAACTAGTTAAATAAATTACTTAAAATAGCAGACAATTATAACTA
TATAATGATATATGAATATTTGAATTAACAAATATAAAAAAATATATTTA
TTCAATATTCTATTTTTGAATAAATTCAATATTATTGATATTATAAAAAT
AAATAGTATCTTAGTCGGAAAAGATAAAATCACAGGGCATTGCCTGGGAG
CTAATCTAGTACAGTTAAATCTCGATTAATTAAGAATTAATTTACATAAA
TTAATAAAATTTTATGATCTCCAAACCACAATGTCGTATTTACAAGTGAT
GGAGAAACACGATTTAAAGAATAATATGGGAGTAATAATTTTGATGGATC
CTGTTCTTCGAGATTGAAGTTTGCATATGCAATACATATCATATTAATTA
ATAATTCATTTTGGTTGTAATATTTAGGGCTGAACAAAAAACCGAAAAAA
AACCCCGAAACCGAACCGAAACCGATAAAACCGGTCCGATGTTATGGGTT
CAGTTCCGGTTATTGGTTAAAACCGAACCGGTAAAAACCGAACCGATTAT
TTAAATATATAAATATAGGGTCAAGAGAGAACCATTAGAGAGAGAACTCA
TAGAACTCTTACCTAATTTCTAGTATTAGTTAGGGTTCAGCAGCAGAACT
TCACATGCAAAAAATGTCAATATCTATGTTTTATATTATTAAATTATTTT
TGAACACACACAACGATGAAAAAACATGTATTTAGATTTGAATCCTAAAA
ATCTATTTAAAATTTAGGGTTCTGCAGCAGAACCTTAATGGTTCTCTGGT
TCTATTTTAAGTACTTGTTCTCTCTTGAGCGCGACCCTATAAATATAATA
TAATATATTCTGTATATATGTTATGGGTATGTTCTGTATGTGAATTTTCT
GTTTGTCGTGTCAAATTATTTACTTAGAAGTTGGCTGCGTTAATCCTTAA
TTTGCATTCAAAATGTCTCATGCATGTGTGTTGATTCTTCCACAATTGCC
GAACCGGTTCATGCTCTCCCCTAGTAATATTATCAGTTATCTTGAATAGA
TTGGGAGGAATAGTATAAAGCTGGACACTATGCGTAGGATCAGAGGGGAA
AAAAGTTCTGTTGATGCCACCATGAATTAAAAACTCTATACTGGTTTAGT
ATTTATTCGGAGATAGTTATAACTACCAAAAAACAAACAATTCTACTTTC
TATAACCAGGGTACCATCAATTTGCATTCTGAATCGCATAGAGTTTTTTT
TTTTTAACTGGCTGTGCTTCTCTTACCAATTACAGTTTCCTGCATAAGCA
AGTGATCTATGTTTCTAGTAGTTGAACAACCTCTTGGATTTTGGATTGCC
TGGCAAGTGACATATCAGTAGATACAAACCAGGATGACTCATTATAAGCA
TTATAGCTCTGCATTTCTCCGAGATCTTTTTTAGTTGAAATCCTTAAATT
TGAGTTCCCAACTTTCTCTAGATTATAACTGTTTTACGGAGAGATAAGTT
ATCAGAATTTTGCAATAAACTTTTTTTGTTTAAATGTATTATGACAGATG
ACTCCACTAAGTACTTAATTGAAGTGAAATAACCTACAATTTCTGCTTTT
GGAAGATTTGTGTTTCTCTTATGCTTTTTTTTTTTCTTGTCAATTTGAAT
TTCAACCCATATATGGTACATAATAGTTGTTCTTTGAAAAAAGCATATAA
CTTGGGGTTTGGGAGTACCACCAGTTTGGAACAGGTTGACTGTTCCAAAC
AGCAGAATGCAATACTTTGGAGACGTCACATCTGAGACTTGAAGTACTGA
ACTTGTTGAGGAATATAATATTACAAACTACATCCATTTTGGTTTTGTTT
CTTCCAAGTCAAATTTGACTATAAGTTTATATAAACCTATTTGGTGTGTT
TGTTAAGTGACAACTTGTGACGTGAAACTTGTTGAATCTTAAACGTCGGT
ATATATATGGTAACAATGAGTTTGTGATTGAGTGAAAAATTATAATACCC
TAACTCGTGTAACTACTAGTCGTTCCCTTTTTTTTTTTTTATATTTAATA
ACTTGCAACTTATACAATTTTTTTTCAATGAAAAGTAAGTTCATTATTTA
TTAAATTATCCAGATAGATAAATAACTAGTAAGAAAAACTTATATAAGTC
ATAAAACTTTGAGGAACAATTACCTTATGTATAAGTCATACAATAATGTC
TGGCAACTACCATTTTTTAAAGTAACCACGAGCCGAAATGTTTAGATAGG
TATCGTACTGGAGAAGATTGCTACATTATGCACAATGGTTATCGACTATC
AACTATATATGTGTGGTTCATGGTATTGTTGGTTGATTCCAATTTAGCCT
TTTGATGGACAACCTCAGTTTATGGACTAATATGGCCATGAATTTCTAAC
TCTATAGTTATTTGGTTGGGAGTTCAGGTATTTGTGAGCTTGGAGTCCAC
TCCTGATACAATGCTTCGATCTGATGCCGTCAAATATGCATTAATTGGAG
TCATGAGAGACCTTAGAGGGATTGCAATGGCAACCAATAGGTTGGTAAAA
ACATTATCTATAACATTTTTGATGACTGTTCATATAACACTTGCTTTCAA
ATTTTAATCTTTCAGTAGGAGAAATTACGCGCTTCTGTTTGACTGGTTAT
ATCCCAAGCACATGGCAGTTCTGCTGAAAGGTATCACACATTGGGCAGAT
ACACCAGAGGTAAGTATCACAATTTATTGCTTTCTCTTTCAAGAAGCTGC
AACTTCTGTTATTTTTTATTCTAATGGATTTAGGAGGCAATCAAACATTC
TTTTGAATTGAGTAGTTTCTGCATTGATTTCGGGAGGTAAAGCTGATTTA
TGAACACATTATTGACCTTTTTGCCACTGTATTTTGTTCAACTTCCCCTA
AAATTTCAACATTCTTATGATTGTTTATGAGCTAGTTTAATTTTTTGAGT
ATATATTATTTAAACCCATTTGACTAGACACTTAGATTAGTTTAGTGTTT
ATATTTGTATATATTAGGATACTGAACATCTCAGACTAGGAACTAATTGG
AGTCAACATATCCTCTCTATCCATTTTTTCATTTTTGTGGGTAAGGAAGG
TGGTGGGTGGTGGTTCAGGTGGTGGTGAAGGAGTGATTACCAAGTCGATG
CTTGTAGGCTGTAGCTTAATTTTCCAGTGCCAACATATCATCTCTGTGGC
TGTCTGGATCATGGAATTTTTTATCCGCTTTAGGAATAGGAATGCGATTA
TAATACATTTTTTATTGAATATGCTGTCCCATTAACATGAACTGGGTCAC
TAATTGTTTTATTAAACACTTGTGCTATATATGTTGTAGATTGAGTTTTT
GTCTTTATGTATTAATATCATGATGTAATCAATTTCTGCAGGTTTCCACC
CCATTACTTAAATTCATGGCTGAATTTGTGTTAAATAAAGCTCAGCGTTT
GACTTTCGACTCCTCTTCACCTAACGGAATACTGCTTTTCCGAGAAGTTA
GCAAACTACTGGTTGCATATGGATCAAGAATACTGTCCCTTCCTAATGTT
GCTGATATATATGCGTTTAAGTACAAAGGAATTTGGATTTCTTTGACTAT
CCTCTCAAGAGGTATATATACTATTTTACTTTTAGGTCCATAAATGGAAG
GTCTGCTCTGCTTTTTAAGTTCTTCGATTATTATTATTATTATCTAACAG
ACTGTGCTAGTTTATAAATAAATACGTGACGCCCTTAATAAAACTTCTTA
AGTATACGGATTTACCATGGAATCAGTGCTTTTTTCATATAAATATATAA
GAATATGAATTCATTTGTAGCTACAAATTTACAACAAAGTAGTTCCAAAC
GTTTTCATTCATGTTTAATTAGAAGTGAATAACAGAAGTTCTTTTCTGTA
TTGATATCATTTGTTGACTATATCTGGATTTTCTTATCAAACTCAGTATA
AATATTAGCGGCATGATATATTTTACAAGACGAATTGACCACTTCTCCCG
ACTGAATCATGTATGTTTGACATTCCTTCTCACCCTGAATCCTTAGGAGG
GCATAAACACAACTCTTTTAAACTAGTCTTTAGTGCCATGTTAGATATCA
ATTCTTCCAAAATCTTAAGGTGCTGGGGATAGCCAATATAAGGATTATAT
ATAAAACAAGTACCCTTTAGCTTGTCAAAATTATTAAGGACACTTGACTG
TTTTCACCAACAAGGTTCAGATTCATGTCACAACTTGTCCATGTTCCCAC
ATTAGGACATGTGTAAATCATTGTGTTCAAGCCATTAATAGCTGCTTATC
TGCTTCATATATATTGTTTGTATAATTGGATAGGTAATGTTGTTGGTTTC
CAATGTACTTGTTACTGCATTTAAAAAAAAAATTAGAAGAGATGCAGGTG
AGAAGATATACATCTTTCGTTTGCTAAAGTTGGCCTTTTTTTCCTGTCAA
AATGGCAGCTCTTGCGGGAAATTATGTGAACTTTGGTGTATTTGAACTAT
ATGGTGACAGAGCACTTGCTGATGCACTTGACATTGCACTGAAGATGACT
CTTTCAGTTCCATTGGCTGATATTTTAGCATATAGAAAGGTACAGTTAAA
CCTCTTTAAAGTACTAACATCGGGACCAAGGAAAAATATTACTTTATCGA
GAGAAAAAATACGCCGTATCCATCATGTCAGGACCAAAAAGGAAAGAAAA
TATTTATTTAGCAAGTCTATATTAGTTTTGGTAATGGTTGGAGCAGAAAA
CTCGGATATGTAGTTGAGACTCAACTGTTTGTTAATCTCAGTTGCAACTT
ATTTGGTTCCATATGCCATTCTTGTTGTTTTGAATCGTCTTCTTGTACTC
ACTTTATAGTCTGGTCATATACTTACATGTCTTGGGTTATAATTCTGTTT
TTTTTACATGGTCGATTGAGTAAAAACTCTACTCTGTCGCATAAATAATA
AAGTCCTATACAGCACAGTTAACACTTGTACTTGTACAGGACCAACTTTT
CTGTATAGCATGGTCTCTTGGTGATTTGTCAAAAAACATTTTAATATGCG
TGAGAAAGAAAGTTGTAAGCTGAGACTAGAGAGGTTTAAAAACCATTGTA
TTTCAAAATTGAAAAGTAGCTCTGGGCATAATATAGTGAAACAATTCAAG
ATAGATGCGTCAGTAACATGTATATAATGTTCTATGGTAACTTACTATCC
AATATACTTGATATAATAATTTTTACAGTACATATGTAGAAAGCTGCCCC
ATGGTGAATCCATTCAACCATTCCTAAAAGTTACCCACAGTATATAAAAT
GTCAATCTGCTGGTAATATGTGACTATCCTTCTTACCTGAAAGTAGATGT
ATGACCAGGACTAAATTTAACTTTACATTTTGATTCTGCTATTGAAGAAG
TATAATGTCAAATTAGTTTTTGTAGGAAAACACCTGATGTATTGGTTGCA
TTTGATGACCAAATCTAAAGTAAAGTATTTTAACTTGCAGCTGACAAAAG
CATACTTTACATTCCTGGAAGTTCTGTTCAGCAATCATATTGAATTTTTA
CTGAATGTGGAGACAAACACGTTCATGCATATTATTGGTTCGCTAGAATC
TGGGCTCAAGGGTCTAGATTCAAGTATTTCCACACAGGCATGTCTCTTTC
TGATGCCCAAGTTATTTTATTCTCTACTTCATATTTAAGGAGATATACAT
ATTTCATATTACTCTGCACTTGAACTCATAAAATATAGCTTACTATACTA
GGAGCTCGTTTTGGGAATCTTAAAATAGTGAAGAGTATCTCCAGCAGTGT
CCTAAGTAGATTCTCTAAATATATGATAAATGATCCAAATTCTGAAAAAT
AGGGATTGTATATTGATTGACAACTCCAACAATGATCCTTATTTGTGTTC
CCTATTATTATTACTATAGTATTAAATTCAAATTCTTTTAACAAAAAGAT
CATGGAAAAGTGTGGGAAAGAGAGTGCAAAAAGTAAGAGATGAATATTTA
ATCATTAATATACAATGAGGNNNNNNNNNNNATTATTATTATAATATTAT
ATTCAAATATTTTTAACAAAAGATAACAAAAAATATGTGGGAAAGAGTGT
GCAAAAAGTAAGAGTTGAATATTTAATCATTAATATACAATGAGGAATGG
GTTAGGGATTACCTATTTATGAGGAATGAAAAATGGATCCTAAAGTTTAG
GGAATGAGTAGGGAATCTGCTGGAGTGAATTTTTGTCCATATTCCTCAAA
ATTTTAGCGTAGGACATCATATAGCTAATCTTCTGGAGATGCTCTTATGG
TTTATAGTGACTTGATGTGACAAGTTGATCAAAAAAGTATATCCTACCAA
CTTGTGGCTTTAGGTCAGTTTATGACTTATTTTTAACTTTAAGCTGGATT
CTGACTTATTACGTAACCAGAGGTTTTTGAGCTTAAAGTTGAAAACAGCT
TAAAACCTGGGCAAAATTGCCCACACGCTCTAGATCTGTTCCATAGTTCT
GCATTGCCCCGAAAACAAATCGTAAAAATTTAATTTTAACATTTTTTCAA
TAATTCAGTTTAAAAAAATGTGATTTTTATAAAGTATTTAAAGAAGTACA
AATACTCTGATATTCTATATGCCAAATTGGATCTCCTATCAGGGCTAATT
TTTTCCCAGATCATACTCATAAATGTCCATATTATATTACTCGGTTGCAG
TGTGCATCTGCAGTAGATAATTTGGCTGCTTATTATTTCAACAACATCAC
TATGGGAGAGGCACCCACTTTGCCTGCTGCAGTCATGCTTGCTCGTCATA
TAGCAGAATGTCCGAGATTGTTGCCTGAAGTAAGTCTTAAATTTCTGGAA
TTTGAATTAATTGTTTGTTCATCTTATAATAATGTGGAACAATATATGAT
TAGTTTTCCTGTTATAGATATAATAACTATGTAACCAGTCTGTTGCTACG
TATTGGAGTTGGCAACATTAGTGGATATTGCACTGTGTCCGAAAGTTCTA
CTTTCTTACTGCGGATATTGTTTTATAATATCAAAGTTAATCTTGTAAAA
GGACTAAGAAAGGTTTTTGCAGCCTTTGTGAGTGTGGATTAGTATTTTTT
AACATACTGGTGACCTAATTACAATTTCGTGATGATTTCTCGACGTGGCA
ACGTGGATAACTAATGTATCTCAGCTCAAATTGTACAAAACTAGCTAGAA
GTTTGCTAACAACAGTTTATTAGGTAAAAGAATAATACATATTTGATAGC
TGAATTTACACTTTTCCAGGTATAATAAATTATGTTTCTTTGGTTGTTAT
ATGATGAGTTCGCAGTTTAATATATGCCTCCACTATTATATATGCTTACT
TCTAAACGATAAAAATAAAGTTGTCCCATTGGGCATTGGGTTTCAGGGCT
TCACTGGATTTTATATTTTACTTCCCCTAAAACAGACATGATCATTCCGC
ACTTTTGGAATGACACATGTTATTCTCCTAAAATTTAGGATACAGGTACA
TGCTTATACTCAGTTCTCACGAACAGCATGGACAATAATACCGAACATTT
ATGGACAATAATACCGAACATAAGGCCCTTCACCTAGTTAACTAATGTAA
ATGCTCTCATCTTTTTTAAGGTCATTTCCGAAATCTTTGACAACCACATT
TGTTACTGTTACAACTCCTATCAAACATTTTTATGTAATCACTAATTGAA
GAAGGTTTGTCCAACTTAATCATTCTTGGACAAGTATTACCTAAACTCAG
GCATAGATGAACTTTAAACTGGGCAGTGGAAATTGTAGGTTCATGGGTAA
GATTAGTAACGACCTATCCTGATTAATAAACAAGTTTGACATGAATGAAA
TTACACATGTTAAACTAAGACCTAACATGACAACTTAGATATATGATAAA
CATGGATCAGTAAATCATTTCTGAAATGTTCATTAATACTCTTGAATTTT
ATCACAAACAGAGCCATGTTATAATTTATCTGAATGACATTTCCTTTGTG
TAAGATCTGAATGACATTTCAAGTTTGCTACTGGAACAATGTGTCTGTTC
AATCTAGAAAGTTAATATTCTTAAGCCAGCTTTATATCTAGTTGCTTGCA
CTATATACTAATCTTATTAGAGTCAATTCGTTACCTCGAATTATCATCAA
GGAAACAAATAAATTAATAAGGACTGCTTCTTCTTTTTTTCATACAGATA
CTTAGGACACTATTCGAGATTGTTTTATTTGAGGATTGCAACAACCAATG
GAGCCTTAGCAGACCAATGCTGAGCTTAATACTTATTAGTGAACAGGTAA
TGCTTAAATTTGATTTCCTATCTAACAATTCATCTGCTTTGTACATGATA
AAATGATTTTTAAATGGCTTTGGGAGGTGAAAATCTGAAAGTGTTGCCAA
CTAGTTTACTTTAAAATATGAAAATTGAGTGAAAATACTGTGCATCTTTT
TGACTACATTGTAAAGCAGGATACCGTTAAAAATGTCTCTTGTGTTTAAC
AATTGTATGAAATTAAAATCTGACTCAGAATATTAGGTTATAGTCTTATA
GATATGACCCTTGGCCTTTCTATTTACTTGTTGGACCTTGTGATGTCGAA
CAGAAGCTCTGTAGAAATATCAATCCTTATAATAATATTATTTTAAAGTT
AGATGTTGTATATTGATCTTTTTATATGAATATTTTTTCTTGCCTATTTT
CTGAGGCCTGTTATGGCATTTGGCCATTCCAAATTGATTGGAATGTCCCT
TGAAAAGCTTCTCTGACCCAAATATAGTTCTGTTTCATATCTACTCTCGA
ATACCAGCTTTTTTATTATATATTTTCATATCATGATAATGAAATTATGC
CACAAACTTGAGTGCATGAATATAGTAAGGTTGTTTCTTCTGAACTTTAG
TTTTGTTGAGCTTCTTGTTGAAACTTGTATAGTTTGCTTGATGACTCGTA
AATATTTTTATTGCTCACTTGAGTAATGTATAACTAATAAAAGAAACAAA
TGTAAAAAAGTGTTGCCGGTTTGTGGTTTTGTCAAAAGAGTGGGATTTGC
AATTATTTGGGTGCAAGTCCTGAGAAGCCATAGGTTTCTTTTGGCCATGG
TGCAGGGTTTTTTGATATGTCTTGGATTTTCTTTCCTAATATATCATAAT
CTGTTACCAGATAAGAATATGAAAAACTTGTGCCAATTGAATGTATAAGA
CATGTAAATCGTTTGCTATGTAGTCTATATTCTGTGTGACTATACTTGTG
TAACATGTTTATGTCTACATCTAGGGTACACCCTGACATTGATTAGTTAG
CCTCCATTTGAAGAATAAGTAGGAAAATTAGATTCGAGAGTTGTATATTC
TTATATCACCTGAAACTGCATACTGTATATGACGACTGCATAAAAAGTTA
AGAATCACATATCTTACAGTTACGACCTGTAGAGTATACTTATATCTATT
CATCTGCAGATATTCACTGATCTGAAAGCTCAAATCCTGGGATCACAGGT
TAGGTTTATCCACTCATCACTTTTCTATATATATGAGAGCATGAAGCAGA
ATACTGGATAAAAGCATGAATCATCAATATAAATAAATAGCTTTGTTATA
GTAGTATTAATGTTCTGAACATATGAAGCTCTGTGTATGTAATTTTGCTA
AGTTATTTAGTGTCATTATTATTACCAAGTTGCACAGGTTAGCTTATATG
TGGACTTCTGCTATATTTTATTTTTCATTGTTCTTTACCATATAAGGTCT
AACTTGTCCTACGGGCATTGAACTTTGGGTGATGGCTCCCTCCAGCACAA
TTTAAATGAAAATGTCCAAAACAAACATACGAAAATCTTGGCCCTGTCCT
GGCACATGCATAATGCGTTTGAAATTTGCGTCATGCTTAAATGCATGTCA
TACACCTGTTACGTCCTTTAATTAATAAGTTCAGCTTGATCAAACGCATA
GTATCCATGTGTTAATACCATTATGTGAATATCTCTCGTGTGAACAGAGT
GCTTATTAATTGCCTCTGTCTGTGGACCCCACATTTAACGCACTACTGTA
TATCAACATTAATAAGCTGCTGCTCTGGTTAAAATAAGATTGGACCCACT
AGCAAACTACAACCAGCCTATAAAGCATCGTTACAACCAGATTTCTTTGT
TATTCGCATTTCAGTTTGTGATCGTGACAACCAGCTTTCTTTGTTATTCT
CACATCAGTTTGTGTTAAGAAAGTGCTAGTCGGGGGCCGGGTTTTTCTAC
TGTGCTGTTTTAGGTACCCGGGTCTCAATTGTGTGATCTTTTGGTCATTA
TCTCATGAACTTTGTCCTATATTAAATTCGGGTTTTATGTAGATAATAAG
GTGACTTTAGACTAGCATACCTGCAGGCAAATTTTTTAATTCTCTGTTAT
CCTCTAGGCACTTTGTTTTTTTGCTTACATTAACAGTTTGGTTTTTTACT
TCTTGCAGCCAGTGGACCAGCATCAACGTCTTTCCTTGTGTTTTGACAAA
CTTATGGCTGATGTTACCCGCAGCTTAGACTCGAAGAACAGGGATAAATT
TACCCAGAATTTGACTGTTTTTAGGCATGAGTTTCGTGTCAAATAGTGCT
ATAAAGATCCTAGATGCACTGTACAATCTTATATTTGGTGGAGCCACAAG
GCAAGGGAGGA
Sequence Length:
15411
Sequence Checksum:
dc975878fac75cdd35a95a83f36b54aa
View location in JBrowse:
Cds:
>DCAR_022673cds ATGCCCCCAGTTTGCTTGATGAATTTGTTCCCAAAATCATTGAAGGTTTC ATCACATCAAGATTTGACTCTGTCCAGGCGGGATTCCCACATGACCCTTC TGAGAATCCCTTGGACAATGTTGAGCTTCTTCAAGATCAACTTGATTGCT TTCCTTACCTTTGCCGGTTTCAGTATGAAAGCAGCAGCTTGTATATTATC AGTGTTGTGGAGCCTATTCTGCATGTATTTTCGAGCAAAACTTCCGTTAG GAGATCCGAATGACTTGTCCGTGATTGAAGCTAAGCTTACTTGGATTGTC CACATTATCGCTGCTATTCTAAAAATCAAACAGTGTACTGGTTGTAGTAC TGAGTCCCAAGAAGTAATCGATGCAGAACTTTCAGCTCGAGTTTTGCGCT TGATCAGTGCCACTGATAGTGGGTTACACAGTTTGAGATATGGTGAATTA AGCAAGCAAAGACTTGATCGTGCCATTTTAACTTTCTTTCAGCATTTTAG AAAGTCTTATGTCGGTGATCAGGCCATGCATTCGTCCAAGTTATATGCCC GATTGTCCGAGCTTCTTGGACTTCATGATCATCTTTTATTACTAAATGTG ATCGTCGGAAAAATTGCTACAAACCTCAAGTGCTATACAGAGAGTGAGGA TGTAATTGATCACACCTTGAGTCTGTTCTTCGAATTGGCATCTGGATATA TGACTGGAAAACTGCTTCTGAAGTTGGATACTGTCAAATTTATTATTGCA AATCATACTAGTGAGCACTTCCCCTTCTTGGTAGAGTATAGATGCTCCCG CAGCAGAACAACTTTCTTCTACACTATCGGGTGGTTAATATTTACAGAAG ACAGTGCTGTCAAATTCAAGTCTGCAATGGAACCATTTTTACGGGTATTT GTGAGCTTGGAGTCCACTCCTGATACAATGCTTCGATCTGATGCCGTCAA ATATGCATTAATTGGAGTCATGAGAGACCTTAGAGGGATTGCAATGGCAA CCAATAGTAGGAGAAATTACGCGCTTCTGTTTGACTGGTTATATCCCAAG CACATGGCAGTTCTGCTGAAAGGTATCACACATTGGGCAGATACACCAGA GGTTTCCACCCCATTACTTAAATTCATGGCTGAATTTGTGTTAAATAAAG CTCAGCGTTTGACTTTCGACTCCTCTTCACCTAACGGAATACTGCTTTTC CGAGAAGTTAGCAAACTACTGGTTGCATATGGATCAAGAATACTGTCCCT TCCTAATGTTGCTGATATATATGCGTTTAAGTACAAAGGAATTTGGATTT CTTTGACTATCCTCTCAAGAGCTCTTGCGGGAAATTATGTGAACTTTGGT GTATTTGAACTATATGGTGACAGAGCACTTGCTGATGCACTTGACATTGC ACTGAAGATGACTCTTTCAGTTCCATTGGCTGATATTTTAGCATATAGAA AGCTGACAAAAGCATACTTTACATTCCTGGAAGTTCTGTTCAGCAATCAT ATTGAATTTTTACTGAATGTGGAGACAAACACGTTCATGCATATTATTGG TTCGCTAGAATCTGGGCTCAAGGGTCTAGATTCAAGTATTTCCACACAGT GTGCATCTGCAGTAGATAATTTGGCTGCTTATTATTTCAACAACATCACT ATGGGAGAGGCACCCACTTTGCCTGCTGCAGTCATGCTTGCTCGTCATAT AGCAGAATGTCCGAGATTGTTGCCTGAAATACTTAGGACACTATTCGAGA TTGTTTTATTTGAGGATTGCAACAACCAATGGAGCCTTAGCAGACCAATG CTGAGCTTAATACTTATTAGTGAACAGATATTCACTGATCTGAAAGCTCA AATCCTGGGATCACAGTGGACCAGCATCAACGTCTTTCCTTGTGTTTTGA CAAACTTATGGCTGATGTTACCCGCAGCTTAG
Pep:
>DCAR_022673pep MPPVCLMNLFPKSLKVSSHQDLTLSRRDSHMTLLRIPWTMLSFFKINLIA FLTFAGFSMKAAACILSVLWSLFCMYFRAKLPLGDPNDLSVIEAKLTWIV HIIAAILKIKQCTGCSTESQEVIDAELSARVLRLISATDSGLHSLRYGEL SKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNV IVGKIATNLKCYTESEDVIDHTLSLFFELASGYMTGKLLLKLDTVKFIIA NHTSEHFPFLVEYRCSRSRTTFFYTIGWLIFTEDSAVKFKSAMEPFLRVF VSLESTPDTMLRSDAVKYALIGVMRDLRGIAMATNSRRNYALLFDWLYPK HMAVLLKGITHWADTPEVSTPLLKFMAEFVLNKAQRLTFDSSSPNGILLF REVSKLLVAYGSRILSLPNVADIYAFKYKGIWISLTILSRALAGNYVNFG VFELYGDRALADALDIALKMTLSVPLADILAYRKLTKAYFTFLEVLFSNH IEFLLNVETNTFMHIIGSLESGLKGLDSSISTQCASAVDNLAAYYFNNIT MGEAPTLPAAVMLARHIAECPRLLPEILRTLFEIVLFEDCNNQWSLSRPM LSLILISEQIFTDLKAQILGSQWTSINVFPCVLTNLWLMLPAA*