DCAR_022553

Resource Type: 
Gene
Name: 
DCAR_022553
Identifier: 
DCAR_022553.gene
Locus Tag: 
DCAR_022553
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_022553, is a part of gene, DCAR_022553.
The genetic_marker, MK005216 K2660, is located in gene, DCAR_022553.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_022553DCAR_022553.mRNAmRNADCARv2_Chr6:10414200..10424874
Sequence: 
ATGTCGTGTGCCTCTGTCCAGGCATTGCGGGAAGTGGAGGAGCATAAACC
AATAACCAGTCTTGCTACTTCCGGTACGCCTGAATTAACAAAGCCCAATA
GTAGTAAAGGATGGGATGAGCTGGTGCAAAGAATGAAACTTCAGAAACTA
GAAAGTAGTAAGAATAATATATCTTACAGAGCGTCAGTAAGCATGCAAAA
TAAGGATGAGAGAATACATAATGGCAAATTTCATTCTTATGACCTTGATC
ATATTGCAATGAGAGGAGCTTCAAAGAAGTCAACTGAAGTAGAACAGAAA
AATGATGTGCCGTTTAACTTGCATTCTTCAGTAGCGCAGCCAAGAGTTGA
TAGTGAAAGATATGAAGCTAATAATAAGCGTGAGAGGGGCTATATAAATG
GGTTGTCAGGAGATGCTTCTACCCAACAACACAATACAGTGTCTAACAAT
GATCATAGTAGTCAAACACTTGGTAATGAAGGGGAACAGAATATCTCTGT
GACATGTATACCTAAAGCTCAACCTAATGGGTTATCAGTGAAACACTTAA
TAGAAAAAATGGAAAGAAGTCCAGGAAAAGATGAAAATTTAGCTAATGGT
GGAAGCAAAAAAGATCCTGATACAAGTGAAACCTACGTTGTGGAAATCAG
TGCTGAACGAACAAATGGACATCTTCGCGAGAAACTCAATCGTATATATG
ACAAGGTTCTTGTTGTTGACAATGTTGCTGCAGCCAAGGAAATTGTCGAG
AAGCTTACAAATCAGTACAGGCATCTCGTCCATGCATGTGACACAGAGGC
ATGTATCTGCTAAAAGTTTTTTTTTTTTTGCCCCGTTTCTTGCCTAAACA
CCATATTATTGTAACCTCCTTCTCTGCTTGCACAATTTTTTTACAGGTGG
CCGGAATTGATGTAAAGCAAGAAACTCCTGTTAACCATGGAGAAATTATA
TGTTTCAGTGTTTATTCTGGACCCCAAGCAACTTTTGGGAATGGAAAGTC
ATGTATCTGGGTAGATGTTCTTGATGGCGGTGGCAAGGATATGTTAGCCA
TATTTGCTCCATTTTTTGAAGATCCATCCATTAAAAAGGTAATATTTCTG
GAATCAGGTCTGTCACTACCGTGTTTAGTAATTTTTACTGGATCCTATCT
TTCTTGCCAGAATTTTTACTGGATGTTAAGCGTTATAAAATCTGAATTTA
GTGGGACAAAATGGATTCTTCCTTTATATCTTTCATGATAATATAAATCT
AGGTCACCACCATCAACAGGCATAATAATGATGAGTTGTCCTGTATCTGT
AGGTCTGGCACAACTATAGTTTCGATAACCATATTATAGAAAACTATGGG
CTTAAAGTTTCTGGTTTCCATGCTGACACTATGCATATGGCTCGACTATG
GGATTCTTCAAGAAGAATAATTGGAGGTTATTCTTTAGAAGTACTTACAA
GTGATCGTAAGGTTATGTCTGCTGCTGGAGTCTGCCCTAGCGAAGGGCTC
ATTGGTAAAATCTCAATGAAAACCATCTTTGGCAGGAGAAAGCTTAAGAA
AGATGGATCTGAAGGAAAAGTTATTGTCATTCCTCCTGTTGAAGAGCTTC
AGAGAGTGGAGCGTAAACCATGGGTTTCTTATTCTGCTTTGGATTCTATT
AGCACACTCCAGCTCTACGAGAGCTTGAAAAATAAGTTGTCCTGTATGGA
ATGGCAAGTCAATGGAGTTAAAGAAGGGTCAATGTTCACTTTTTATGAGA
AGTACTGGCGTCCATTTGGTGAACTCCTGGTTAATTTGGAAACTCAAGGG
ATGCTAGTTGATCGAACTTATCTTGCTGAAATTGAGAAAGTGGCTATAGC
AGAGCAACAAATTGCTGCGGATAGATTTAGGAATTGGGCATCCAAGCACT
GTCCTGATGCCAGATACATGAATGTTGGAAGTGATACACAGCTTCGCCAG
CTATTTTTTGGCGGCACGGCCAACAGGTACAAGTTGTCCCTGATATGGAC
TATATTAAACTCTACATAACCTCAATTTAGCACATTGGGTTGTTCTGGGT
TATATTAGTTGGGACCTTAAAACTGTTCAAAACTAAAATTTTACCTATGC
CAGAACAGTAATATATAAAAATCATATGTACCTGTTTGTATGAACCACAT
TTATCTTCTTGTTTTATCCTCTTAGGTTATGTTCTCATAATGTCTCAATA
ATTGAATTTTTCCTTCATTTATATAACGCAAGCTACAAGTCAACTGATTA
AAGCCTATACTCAGTTGACTTGTAGCAATTGATGTGGTTCAAGACAAGAG
TTCCTGTATAAGTAATAATTAATGTGTGTAAACATGCACCAGTAAAAACA
GTAATAGCAAACAGTATACATCTTATGGGGTCATGCAAACAGTTTAACAT
CCATGATCCAATTATATTCATAATTTTATTACTTTCAATGTTCAGGCCTC
AAATACTATGTTCACTACCTGTCTTAATAAAATTGCCTACTTTCTATTAC
AATGCAGCTCATCCCCCAGGCTTTCTACTGACTTGTAACTGTTTTTCTGT
TTAAATTATAGAAAAACTGGTGATATACTTCAAGAGGAGAAAGAATTTAA
AATTCCTAATGTTGATAACATTATTGAAGAAGGAAAGAAGAAAGCCACAA
AGTTCCGCAAAATTACTCTGCACAAAATTGGAGAAGAAATGCGAAGTGAA
CAGTACACGGCAAGTGGTTGGCCCTCTATGAGTGGAGTGGCTTTGAAAGC
CCTCTCTGGTAAGGTATCAGCAGAATATGAATTTGCAGATGAATCCCTTG
ACTCTGAGCCTGATGGAAGTATTGAAATACCTGAAATGGAGGAAAATGAA
GGAGCTATCACTGATACCTCAGCATATGGCACTGCTTATTCTGCATTTGG
AGGGGGGTCAAAGGGCATGGAGGCCTGCCATGCCATCGCTTCTTTATGTG
AAGTTTGCTCTATCGACTCATTAATATCTAACTTCATCCTTCCTTTGCAG
GTTTGTTCATTTCCTCTTTGTTAGTTTTGGTTATGCAATCTTAACTTGCT
ACAAAGTTTATTTTTTTGATTAAGAATCACTGAGACTGCTAAACATCTTG
CTAAATCTTTGCTTTAGTCCCTAAAGTACTCTTACACACACACAGAGAGA
GAGAGAGAGAGAGAGACCCGTACACAGGCTTACCATGTATATGCAATAGC
AACATGTTCTCGTGATCTTTAGGCATTAAATATCTTGGTCAGCCTCCATT
ATCTGATAGGAATGTAGTACGGCTTGGGTAAGTACTTTCAGGTTGTACAT
ACTTCAAAGTACAATGTAACTACGGTAGGAGATGTATACTGTTTTTTAGT
CTTATCTAGCCGGTGTAGAACAAATCAGGTTGAGGACAGAAACAAGTATT
ATCATGAAACATGTGCATGGTTGTCACATCGGTAAGTCGAAGCGAGTCGA
TGGACCTCTGGCTAGTCGACTAGTCGATTAGTCGTAGACTAGTTGATAAA
AATATAATATGTTATAGTAAATTAAATATAACATATGTATATATTACGTA
ATGAGGTTTCTAAGTTCTAACACCTTCCACAGTATCTTCCTTCAAAGTGT
AACTATCTAAAGAATTAAGGATCACAAACTTGAAGAGAATGAGGGAAGAG
TGGAAAGAGTTAACAACAAATCAAAGTACTTGTGATCAAATGATATATGT
AATAATTAACATATAACAATTGTGTGATATGGTTATGTGATCTAATTTGT
AATGAAGTATGGCACTGGTAGTGCAGTGCAGCAACAAAATTATGCCGAAT
AATATATGCAAAATTAGCAGAATTAATTGTGCACAATGCAGATTGCAGAA
AAACAGAGCAGAAGCAATAATCTGCAGAAACATAGAGCAGAAATCTGATA
TGCAGAACAAAAAAATGCAGAATTTAAACTGCAGCTCGACTAGTCGACTA
GTCGCCCGCTTAGTCCACTAGTCGACTGCTTAGTCGCCCAGGCGACCGAA
ATATCGACATTCATCTAGTCGACATGTTGAGTCGACATCCATTAATCTCT
TAATCGATTGACCGACATGACAACCATGATCATATGTTAATTGTTTATTT
GCTGTAATCTAAATAGGCAACTTTGCAAGTATTTACCTCAAGTATACTTG
TGAAATAGTTTAAAGAGCTTCATTCAAGGTCCAGACAAATATTAGAAGAG
ATAACTCCTCAAAATGATATGCAGGGCCTCAGAAAATGTTTACACACTTG
AAACTGAGTTTATTTGTGTTATATTGTTTCAGGGGGATCATATATCTGGA
AAAAATGGCCGCATTCATTGTTCACTAAACATCAATACTGAAACTGGAAG
GTTATCAGCTAGAAGGCCAAATCTGCAGGTACTATTTAGATTTTATGTTA
GTATGGTTTTGTGTTATCTCAAGATAGTGACTTTTAATCTAAAATTAATG
TTATGGAAACTACATATTAGCTAAACTATGTGTCCAGAAGGTAGATCTTT
AGCAAAGTTGCACAGGGAATGTGTTCTTTTTTTCACTGAGTTCTTTTTTT
GCATGCAACAACCTCTGCAAATCAGAATCAACCTGCTTTAGAGAAGGATC
GGTACAAGATCCGCCAAGCATTTATAGCTGCACCAGGAAACTCCCTTATA
GTTGCTGATTATGGGCAGGTGCATATGATTTTCACCTACTAGATTAAAGT
CATTTATAACTCATTTTTTGGGCGAGCTGATTGATTTTGATGATGTAAGT
AGTTGGAACTTAGGATACTAGCACATCTTGCCAACTGTAAGAGCATGCTG
GATGCCTTCAAATCTGGTGGAGATTTTCATTCGAGGACTGCAATGAACAT
GTATCCATACATCCGTGATGCCGTGGAGCACAAAGATGTACTTCTTGAAT
GGTATCCTCAGCCTGGTGAAGATAAACCTCCAGTTCCTTTATTAAAGGTA
ACTATCAAACCTTTCCTCTGAAATTTCAATACACCAAGATCTAGGAAACA
GGAACACAAATGGTTTATAAAAAATTGGCTACCAGCTACCTTACCTGTAT
GCACATTTATATTCGACATATGCATACACTAGTCTGAATTAGTTCAAGTT
GTTTTTTAAACATTCTACCTGATATATAATATTATGTATGTCGTCGACAA
ATAAATGTGGAAAAAAAGCATTTTTTTTTTGAAAAAGCATGAGAGATTTT
ACACCAAAAAAAAAAAAAACCTAAATGTGTTTGTTGCAACCTGTAGCAAG
CTGGCTGTATTTTGTTCTCTTTCCAAAATTGGATGGTTTAAGTATCTACA
GAACCTTAAGTCAGATACAAATCTTATAAATATAGTAGTTTTGGTTTTAA
AGCGAGCTTAACTAATATGGAGTATGAACAGCGAAGTGGATATTTAGGTG
ACAATGCTCAAATTTTGCAATATAGTTTTGTTGGTCTATACCAAGCTTCA
TCATGGGAATATGTAAATTGACAGAGCTTTTCCTTCAAGGGGTTCAAAAT
GTCACTAAAACACATCTATGTTTGCAGGATGCTTTTGCTTCGGAAAGAAG
GAAAGCGAAGATGCTTAATTTCTCAATTGCTTATGGGAAAACCACTGTGG
GGCTAGCTCGCGATTGGAAGGTATTCTTGCAATTCAATCTCGGTCTATTA
AATGTCTGCAATCGAATCTTTGGTCTTTTGATTGTCATCTTCTTTACACT
GAGGCCGCGATTAAGTAGAGGATCCACTTACCACCTGTATTTTCAGGTTT
CTTTGAAGGAAGCAGAAGAAACAGTTAAGCGCTGGTATAGTGATAGAAAA
GAAGTGCTGAACTGGCAGGAACTAAGAAAAAAAGAGGCTCGCGAGAAGGG
ACATGTCCACACATTGCTGGGACGTGCTCGCAAGTTCCCGTCAGCTTCTA
CTTACGCCCAAAGAGGTCACATTGAGCGTGCTGCAATTAATACCCCAGTA
CAGGTGCGTGAAGTATTCATGTTTCAAAACAATTATTGTGGCTTTGTCTA
TATGACGGGTATTCCTTTTTTAAAAGCGAGCTTTTTATTTATGACAATGA
TGATATCAATTTGAGAAGTTAAAAAAAAAAAAAAAAATCTTATAATGCCC
CTTCCTCCTACTTCCCTCTCCAGTCTCCCCTATCCTCTGTTGAAATAATA
TTTTTCTTTCCCTTTAGTACTGAGCTGTTGCGGTAATGTGACTGAACCAT
GCTTATTAAGTCGACAAGTCGAGCCTCGGCGCCCGGACACCTTGGAATCG
ACTAGTCGACAAGTCGCCCGACTAGTCGAAATAAGTCGACAAGTCGTGAT
ATACATGAATATATATATATATACATAAATAAATATATATATACATACAT
ATATATATATAGTAAAGATTATATAATATAGATAAAAACACATCATTCAA
TATTTCAAATAGGATAGAGACAATAAGTTCAAATACCAAAAGTTAAGCAT
CCCTAAGCAAATAAAAACATAATAGATGAGTGAAATAAACTAATCAAGCA
TGAAATCTTCATCTCCCTCTTGAGTATTCTTCAAGGATGGATCGGGAGGA
ACACCATAGTCATCTTCCACTTCCATATCATCAATAGGAGTATGGTCTTC
ATCTTCCCCCCATCCATCATCATCATCATCATCATCATGTAGTGTCGAAC
TAGCGCCACGTCGATTGTAGGTAAGCATATCACTAGTTGAACCACCTTTA
GCTTTTCTTGGTAAAGTGCGTCCCTCAAGTCCTTGTGAGGCACCCGAAGC
TATATCCACCGCACTCCAAAACCTATCCTCAATATCATTCATCCAATCAT
TAGTCCACTCCAAGTCTTCAAATATTAGTGGATTATATTTTTCTCCAAGT
TCACGCATCTTTTTGAATCGGGAATCAATCTTCCGGTTGTATTGAACATA
CACCAAATCATTTAAACGTTGATGTTCCAACCTATTCCTCTTCTTTGTAT
GTATCTAAATTAATCAAATATGAAAATTAATTAGATAGCAAGTATTAGTA
CTTTAGTAGTTGTGAATTGATAACAACAACAACAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAGTGTAGGCACGTACGAATTCAAATGTACTCCAATTCCGTTCACA
ACCGGAAGATGAACAACATAAACCAACAATACGCTTTGCAAATGATTGAA
GCTCAATTGCACGACCTCCTTAAGCATCCCACCAATCAACTAATATAAAA
ATAAAAATAATTCTAATAAGTAATAAGAATATATAAATAGCTAATATGGA
AGTAAGACTAACACAAGTGAGCTTACTAGGACTGTTTTCCTTTCGGTGGT
CAATTGCCATCTCTCTAGCGAATCCTCCTCTTGTATTTTTGTAGTCATCC
GCGGAGTTACTTATAAGGTTCTTTGTAGTCCGATCTTTAACCATCTTCTC
AAGTACATCATTAAAGTCTTCTCTTATCCGGGAGGCACATGAAGGAGTCC
TTTCAACTATGTCAAAGTACTTTCCGGGATTAAGAAACAAGGCCGCCCCA
TACAAAGGATTCCTCATTTGTGTATTACAACGGTCATCAATAATTTTCAA
TACTTTGTTTCGAAGTTGGGATTTTGGACCAACAAATGCCTTTGTAAATT
GGACTCTTGCATAATCCATAGCAGCTGCAACCTCTGCGAGAGCAGGCCTT
TCATCACCATCCGCCATTCGCAAAACTTGAAGAAGTGGCTGTGATGCATT
CAAGCAATCCTCTAAACCTTCCCAAAAGGCTATTGAGAATACAATCTCAT
AAACTCTCCTCCCATTTTCTGTTTTTGATAGCTTTGACAATCCAATATTC
TGACCCAAACAATTTGAGCAAGGCCGGCCTAAGCTTGTGCAAGCGTTGTA
ATGTAAGAAAAGCAGTGGCAAACCTTGTAGCTCCAGTTCTCACTAAATCC
ATCCCATTAGTGTGCTCCCTCATTGCTTGAAGAACACGCCCATGTCTATA
GATAAAGGTAGTACATCTTCTTGCTTGATTTATTACTTATTTAATGTTCG
GAAGCTTGCCAACATCTTCTAACATTAAATCAAGACAATGAGCCGCACAT
GGAGTCCAAAACAAAGTAGGATACAATTCTTCCAAGTGTGCACCGGCTTG
CTTATAATTTGCCCCGTTCCGTCACCACTTGAACAACATTTGGAATCCCG
ACATTAATGATCATTGAATTAATCAAATTAGACAACATGTCTGCATCATG
TGATTCACTCGAAGCATCAAAAGATTGCAAGAAAAGTGTACCTTCGGGAC
TATTAGCAAGGAAGTTGACAAGATGCCTTCATCGTCTATCCGTCTATCCA
TCGGTCATAAGGGTGCAGGTTATTGAAATGATGATGAATAAACAAGTTAT
GTAAAAACAGGACATGAAGTTATGTGAAAACAGAGTAATATGAAGACGGG
GAGAAACAGAGCATGCAGCGTAACGGAGCATGTAGAGCTACTGTCCAGAA
TTTTTTGTAAAATTTACTTGTAAAACTGGCCGCATGTAAAATTCTCTGGC
AGTTGCAAAACAACAGGGCAACCCCCCTGATCACTTGTGAAAGATCAAAA
TAAAAAAAAAACGTGTTAATTTTTTTTTGAATATGAATAAAAATTAATTA
AAATTAATTATTAAATATTTTTAATTAAATAAAACAGGATAGCAGAAATT
AATATAAAAATATTTTAAGCAAAACAAAACTAAAATGTATTTTTTAAAAA
TAAAATATATAAAAAATAAATTATAAATATTAATTAATTATTAATTATTA
ATATTAAAAAAAGTAATTAGTAAAACGTTTTTTATAAAATAAAACAGGAT
AAAATAAATAAATATCAAAGTATTTTAAGTAAAATAAACCTACAATGTAA
TTTTTAAAATAAAAGAGAATATAAATTATAAAACATAAATAATCAATAAT
TAATTTACAAAATTTTAAATAGAAGTAAAATGTAACAGTTGGCTAATATA
GGTACGTGACAGCCATGTACACGCACTATAACACAACCCCCAGCATATAT
ATACACACGAAGGCGTGTGTGTATATACAAACATCAGAGTCGGCCAAAAT
GCCCAAAACAAAAACAAAAAGAAGAAAAAGAGATGAAGAGAGAGGAGAGA
AAAGAGACGAGAGGAGAGGAGAAAGAGATGAAGGAGGAGAGAGGCACTTA
TCGGAAAAAAGCTCCACCACCTGATGATTTTCGCCTCCGCCGCTAACAGC
TCCGTATTTTCTTTCACGATACTCTCAAAAATCTGCGTAAGTATGTTTAA
AAAACCCTAATTGGGTCGGGTAAAACTTGATTGGACCGGGTCGGCTTTTA
CCCGTGGACGACTTTTCAAGCCCAGTCGTTGTTCGACTTTTCTTCTTCAT
CCGACTTAGCGACTAGTCGACGACGACTAGTCGTCGACTCAATAACGATG
GACTGAACTTTATTGATCCATGTAATTTACAGCTTTACGCTATCTTATTA
AATTAGCTGGTACATAATAAATACAGTGCTGGATCCTTTCTCCATTCATA
GTCGATGATGTGAAAAGCGCAAATTAGTCCTAAGCGGTGGAAAGACCTTC
TAGCGCTTAAGCGGTAAGGCGGAATTTTAAGCGGGTCCATAAGCGGATTA
GCTATATATAATTAAATATTTTGTTACTCCCTCTGTCCCTCTCATTTCTT
TACAGTTACTATTTTGGGATGTCCCTCTCATTTCTTTACATTACCATAAA
TAGTAAGTTTTTTCAATCATTATATCCACTATCTTCCCCCACTATCTCAT
ATTTAACAATAAAAACCACTATTACACCCACTACCTTCCTCCACTATCTC
AAATCCATTATTAAATATTGATGGGTCCCACCATTTTACCCACTTTTCAT
CTAACTTTACTCATTTTTCATACATTGTCTTGGTCTCCGTGTCCCCCTCC
AATGTAAACAATTGAGGGGGACGGAGGGAGTATAATGTTAATATATTTAA
ACTAATATTATGTTGTAGTAAGAATTTAAATTTATAATATTTGTAATGAA
ATATATATATTTTAATATTTTAATATAATATATAGTTATAATATAACAAA
TTAATATTTAAATTAAAATTAAAAAAAATAGCAAGTCAACATCATTTTGA
CCGCTTAATAACCGCTTAATAGTCCGCTTAATTTTCAAAAACGCTTAATC
ACCCGCTTAGCACAAAATCGAAGCGTTTTGTGGCAGATTCCGCTTAGGCG
GCCGCTTAAGCGCCCGCTTAATGCGCTTTTTACAACACTAATCATAGCAT
GTGGCAAAAAGTGAGGCATATACACATGAAGAGGATTTAGTGTATGATAC
AAGTATGTTACCTTGTTGCATCTGAAAATATCAACTAACGTCTCATTGTG
ATCTGGCTTTGTTTTCTGACAGGGTAGTGCTGCTGATGTTGCTATGTGTG
CCATGCTAGAAATAGTAAAGAATGCTCGTCTAAAGGAACTTGGGTGGAAA
TTGCTTTTACAGGTTCATGATGAAGTAATCCTCGAAGGGCCGACGGAGTC
TGCTGAAGTCGCCAAGGCTATAGTTGTTGATTGCATGTCCAAGCCATTTA
ACGGCCAGAATATTCTTAAAGTTGGCCTTTCAGTTGATGCCAAATTTGCT
CAAAACTGGTATGCTGCCAAGTAG
Sequence Length: 
10674
Sequence Checksum: 
90d1c35a25fdfa2a3dd1a1c33b850840
View location in JBrowse: 
Cds: 
>DCAR_022553cds ATGTCGTGTGCCTCTGTCCAGGCATTGCGGGAAGTGGAGGAGCATAAACC AATAACCAGTCTTGCTACTTCCGGTACGCCTGAATTAACAAAGCCCAATA GTAGTAAAGGATGGGATGAGCTGGTGCAAAGAATGAAACTTCAGAAACTA GAAAGTAGTAAGAATAATATATCTTACAGAGCGTCAGTAAGCATGCAAAA TAAGGATGAGAGAATACATAATGGCAAATTTCATTCTTATGACCTTGATC ATATTGCAATGAGAGGAGCTTCAAAGAAGTCAACTGAAGTAGAACAGAAA AATGATGTGCCGTTTAACTTGCATTCTTCAGTAGCGCAGCCAAGAGTTGA TAGTGAAAGATATGAAGCTAATAATAAGCGTGAGAGGGGCTATATAAATG GGTTGTCAGGAGATGCTTCTACCCAACAACACAATACAGTGTCTAACAAT GATCATAGTAGTCAAACACTTGGTAATGAAGGGGAACAGAATATCTCTGT GACATGTATACCTAAAGCTCAACCTAATGGGTTATCAGTGAAACACTTAA TAGAAAAAATGGAAAGAAGTCCAGGAAAAGATGAAAATTTAGCTAATGGT GGAAGCAAAAAAGATCCTGATACAAGTGAAACCTACGTTGTGGAAATCAG TGCTGAACGAACAAATGGACATCTTCGCGAGAAACTCAATCGTATATATG ACAAGGTTCTTGTTGTTGACAATGTTGCTGCAGCCAAGGAAATTGTCGAG AAGCTTACAAATCAGTACAGGCATCTCGTGGCCGGAATTGATGTAAAGCA AGAAACTCCTGTTAACCATGGAGAAATTATATGTTTCAGTGTTTATTCTG GACCCCAAGCAACTTTTGGGAATGGAAAGTCATGTATCTGGGTAGATGTT CTTGATGGCGGTGGCAAGGATATGTTAGCCATATTTGCTCCATTTTTTGA AGATCCATCCATTAAAAAGGTCTGGCACAACTATAGTTTCGATAACCATA TTATAGAAAACTATGGGCTTAAAGTTTCTGGTTTCCATGCTGACACTATG CATATGGCTCGACTATGGGATTCTTCAAGAAGAATAATTGGAGGTTATTC TTTAGAAGTACTTACAAGTGATCGTAAGGTTATGTCTGCTGCTGGAGTCT GCCCTAGCGAAGGGCTCATTGGTAAAATCTCAATGAAAACCATCTTTGGC AGGAGAAAGCTTAAGAAAGATGGATCTGAAGGAAAAGTTATTGTCATTCC TCCTGTTGAAGAGCTTCAGAGAGTGGAGCGTAAACCATGGGTTTCTTATT CTGCTTTGGATTCTATTAGCACACTCCAGCTCTACGAGAGCTTGAAAAAT AAGTTGTCCTGTATGGAATGGCAAGTCAATGGAGTTAAAGAAGGGTCAAT GTTCACTTTTTATGAGAAGTACTGGCGTCCATTTGGTGAACTCCTGGTTA ATTTGGAAACTCAAGGGATGCTAGTTGATCGAACTTATCTTGCTGAAATT GAGAAAGTGGCTATAGCAGAGCAACAAATTGCTGCGGATAGATTTAGGAA TTGGGCATCCAAGCACTGTCCTGATGCCAGATACATGAATGTTGGAAGTG ATACACAGCTTCGCCAGCTATTTTTTGGCGGCACGGCCAACAGAAAAACT GGTGATATACTTCAAGAGGAGAAAGAATTTAAAATTCCTAATGTTGATAA CATTATTGAAGAAGGAAAGAAGAAAGCCACAAAGTTCCGCAAAATTACTC TGCACAAAATTGGAGAAGAAATGCGAAGTGAACAGTACACGGCAAGTGGT TGGCCCTCTATGAGTGGAGTGGCTTTGAAAGCCCTCTCTGGTAAGGTATC AGCAGAATATGAATTTGCAGATGAATCCCTTGACTCTGAGCCTGATGGAA GTATTGAAATACCTGAAATGGAGGAAAATGAAGGAGCTATCACTGATACC TCAGCATATGGCACTGCTTATTCTGCATTTGGAGGGGGGTCAAAGGGCAT GGAGGCCTGCCATGCCATCGCTTCTTTATGTGAAGTTTGCTCTATCGACT CATTAATATCTAACTTCATCCTTCCTTTGCAGGGGGATCATATATCTGGA AAAAATGGCCGCATTCATTGTTCACTAAACATCAATACTGAAACTGGAAG GTTATCAGCTAGAAGGCCAAATCTGCAGAATCAACCTGCTTTAGAGAAGG ATCGGTACAAGATCCGCCAAGCATTTATAGCTGCACCAGGAAACTCCCTT ATAGTTGCTGATTATGGGCAGTTGGAACTTAGGATACTAGCACATCTTGC CAACTGTAAGAGCATGCTGGATGCCTTCAAATCTGGTGGAGATTTTCATT CGAGGACTGCAATGAACATGTATCCATACATCCGTGATGCCGTGGAGCAC AAAGATGTACTTCTTGAATGGTATCCTCAGCCTGGTGAAGATAAACCTCC AGTTCCTTTATTAAAGGATGCTTTTGCTTCGGAAAGAAGGAAAGCGAAGA TGCTTAATTTCTCAATTGCTTATGGGAAAACCACTGTGGGGCTAGCTCGC GATTGGAAGGTTTCTTTGAAGGAAGCAGAAGAAACAGTTAAGCGCTGGTA TAGTGATAGAAAAGAAGTGCTGAACTGGCAGGAACTAAGAAAAAAAGAGG CTCGCGAGAAGGGACATGTCCACACATTGCTGGGACGTGCTCGCAAGTTC CCGTCAGCTTCTACTTACGCCCAAAGAGGTCACATTGAGCGTGCTGCAAT TAATACCCCAGTACAGGGTAGTGCTGCTGATGTTGCTATGTGTGCCATGC TAGAAATAGTAAAGAATGCTCGTCTAAAGGAACTTGGGTGGAAATTGCTT TTACAGGTTCATGATGAAGTAATCCTCGAAGGGCCGACGGAGTCTGCTGA AGTCGCCAAGGCTATAGTTGTTGATTGCATGTCCAAGCCATTTAACGGCC AGAATATTCTTAAAGTTGGCCTTTCAGTTGATGCCAAATTTGCTCAAAAC TGGTATGCTGCCAAGTAG
Pep: 
>DCAR_022553pep MSCASVQALREVEEHKPITSLATSGTPELTKPNSSKGWDELVQRMKLQKL ESSKNNISYRASVSMQNKDERIHNGKFHSYDLDHIAMRGASKKSTEVEQK NDVPFNLHSSVAQPRVDSERYEANNKRERGYINGLSGDASTQQHNTVSNN DHSSQTLGNEGEQNISVTCIPKAQPNGLSVKHLIEKMERSPGKDENLANG GSKKDPDTSETYVVEISAERTNGHLREKLNRIYDKVLVVDNVAAAKEIVE KLTNQYRHLVAGIDVKQETPVNHGEIICFSVYSGPQATFGNGKSCIWVDV LDGGGKDMLAIFAPFFEDPSIKKVWHNYSFDNHIIENYGLKVSGFHADTM HMARLWDSSRRIIGGYSLEVLTSDRKVMSAAGVCPSEGLIGKISMKTIFG RRKLKKDGSEGKVIVIPPVEELQRVERKPWVSYSALDSISTLQLYESLKN KLSCMEWQVNGVKEGSMFTFYEKYWRPFGELLVNLETQGMLVDRTYLAEI EKVAIAEQQIAADRFRNWASKHCPDARYMNVGSDTQLRQLFFGGTANRKT GDILQEEKEFKIPNVDNIIEEGKKKATKFRKITLHKIGEEMRSEQYTASG WPSMSGVALKALSGKVSAEYEFADESLDSEPDGSIEIPEMEENEGAITDT SAYGTAYSAFGGGSKGMEACHAIASLCEVCSIDSLISNFILPLQGDHISG KNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSL IVADYGQLELRILAHLANCKSMLDAFKSGGDFHSRTAMNMYPYIRDAVEH KDVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTTVGLAR DWKVSLKEAEETVKRWYSDRKEVLNWQELRKKEAREKGHVHTLLGRARKF PSASTYAQRGHIERAAINTPVQGSAADVAMCAMLEIVKNARLKELGWKLL LQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGQNILKVGLSVDAKFAQN WYAAK*