Resource Type:
Gene
Organism:
Name:
DCAR_021895
Identifier:
DCAR_021895.gene
Locus Tag:
DCAR_021895
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_021895, is a part of gene, DCAR_021895. |
| The genetic_marker, MK004270 K1714, is located in gene, DCAR_021895. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_021895 | DCAR_021895.mRNA | mRNA | DCARv2_Chr6:18772243..18780995 |
Sequence:
TTGAAATTTTAATTACTAATAACAAAATATTAGTTTGGAGCTTGGAGGCG
CTCCCAACTGATATATCTTCAACCCAAACCCTACTGCTACCTATCTGCAT
CTTCCAAACCCTAGCATAAACCTCCCGACCCCAAAAAAATGGAGGAACCA
AAAGTGATGAAAACCCAAAAACCCAAGAAGAGAGAACGCCCAATTGAGCA
TGAATCAGCCTCTAATCCGGACCCTCTTAAACCCATGGAAAGAAAAAAGA
AAAGAAAAGCCATGGCTAAAGAAAAGCACAAATCTTTGAACCCCCCTTGT
GAATTGAAGCAAGAATTGATTGTACCAATGGAGACTCCATCTTCTTCATC
TGGTAATAATGGGTCGCCTGAATTACATCTTGGGGTGTTTAAAGATCTTG
GGAATGGTGATGTTGGTGTCAGAGTTGCTGCAGCTCAGAGGTTGGTTTTG
GAGTTGAAACAAGTTCAGAAAGCTTTTGATAAGAGTGATGAGAAAGATGA
AGATGGTGATGGGTTGATGTTAGAAGCTGAGAAAGATGATGGGTTGAATA
ATTGTGCCCCGTCTGTTAGGTATGCTGTTAGGAGGCTCATTCGGGGTGTT
TCGTCTTCTCGGGAGGTTTGTTTTGGTTTTTCTTGTATTTTGGATACTTT
GGTTTAGTTTGGCATCGGTTTTTTTACAGTTTCTTTTGTGAAATTGAAAA
CATGCTTATCTTTTCTCTTTTTTTTTTTTGCTTTGTATAGCTAGAAGACT
TATTTAGAGGTTTGTTTTACTGATTTTTTGTTGTGGTTTTGGACAATGTA
TATGTAGTATGCTTGTGGATTTAACTCTTTTTTTCCCCGGTAATTGAAAG
CTTATTTTATTTTTCTGCTGGTTTTTGTTGTGATTTTGAAATGAGTATCT
TTATTGCTGATAAAGATTTTTCTTTGTGTAATTGTAAGTTTTTTTTTGCT
ATATGTATGCATTTAATTATTCAGAGGTTTGTAATAAAGGTTTTTGATGT
CATTTTTTATAAATTAGCTTCAGTTTGGTACTGGATTCTCATTTCTCGTG
GTATTTAGAACATATAAAGAATAAAAGTCTTTTTTTAAATTACAAAACCT
ACTTCTATTTGATTTCTACAGAACCTCCTTTTTATTTAGAACATAAAAAG
AATAAGGAATGTATTCTATTTACAAAACATACTTTTATTTGATTTAGAAT
ATTGAAAGTATAAATTTTATCATACATTTAAATATTATATAATTATATAA
TATTTTATTATTATGTAATCTTAACTGTTTATCAAACAGTAAGATCTAAT
GGTTCAAATTTATTATGCGGTACTATACCAAACAACCAAACTATCATCCT
TAGGCTTATTATATATAAGGATATAATTAGTTGCTATCTGTTATACAAGT
ATTTTCTCTACAGGATTACATTTTATTCAGTATTTTTTGTTCCAATTTGC
ATAAGAAAAGCAATCATGTCTACTTCCATTCTATTGCTCTAATTAAAGTA
ATCGTTTCCACTTCTACCATATTTCTACTAGAGTGTCAACTAAATACATT
ATGCATTGTGTTTTTCCGTCCATAGAATTTTTGGCTGCATCTTTTGAATG
ATTTTGTATTAATAATAATAATAATCTTATGAAAGTGTATGTGTAGTGTT
TCATGTAAAAGATAAAGATTCCATGTATACTATTATCAGTTGGGATTTGG
GAATAATGTTTTTTCTAGTAAAGCTTGGATTTTGTCTTTTCATCTTTGTC
TTTTCTGTTTGAGTGACTTGCAGAATGATAATCTGTCTAGTATTATGTTA
GAAATGCTCATAAGATGGCATTGTGCGTTTACTCTCCATAGCATGAGCAA
TGGCATCAATATAGGTGGCCATAAGCTTTGATGTCTATTTGTGTTTTATT
AAGTCAATTTAATTGAGTATTCGTTTGTGCAAGTTATCAACTGTTGGAGT
TGTGGTTGCACATGTAAACATAATTCTCAGTAAAAATGATAATAGTATAC
ATGATTTTAAATGTTTATATTATTGGTCCATACTGGACTTGACAGTAGTG
ATAACTTTGTATTGCTATGTACCACTGTCTTCAAATACTTATCTGTGATT
TAACTCTGAGCATAATCTGACATTTTTCTGCAGTGTGCTAGACAAGGGTT
TGCTTTGGGTTTGACTGTTTTAGTTGGTGCTCTTCCTTGTGTAGAATTGA
ACTCGTTAATGAAACTGATTGTTGATCTATTAGAAGTCTCTTCTTCAATG
AGGGGTCAGGTATGTAAGCATTTCTTATCCTCTAGAAATTTTAGTATCTT
GCAAGTATTAATTGCTTTGATGTCTGTGCAGGATGTAAAAGATTGTCTCT
TGGGTCGCTTGTTTGCTTATGGTGCAATTGTGCGATCAGGAAGACTAACC
AATGAGATGACTTCTGATAAGAGTTATATTTACGTCAAGGATTTTGTTAG
TTCTCTCATATCCCTTGCATCCAGAAAGCAGTATTTGCAAGAGCCGTCTG
TCGTAATTATCCTAGAATTGGTTGACAAGGTACTGTTTAACCTTCTTGAA
TAATGTTTTGAAGCTATATATTCCAGATGTTCTCTTTTATTTTTTTTCTC
CCTTTTTCACTTTTTCCCTCCATAATACTTTCAAGAATGAGTTTCATCAC
TTGGAATCTCCTGTTTTAAGCATATGATGTCCACAACTTTGATCTTCTTG
CAAGTCTTGCAAGATATTGAGGTTAGGTATAAATAGTGCCTCACCGTGTA
AGACCTTGCTTCAGCCTCGCATCATTTTGTATCGAACTCACCCTAGGATT
TTATTTTCATGTGCTTTTCTTGATATATTAAGACAATAATATCATGTACA
CACATGCAATATCATGTACCTGCACATAGTATCTTTTCTGTTTTAGCATA
TGGGGGACCTTTATGTCATGCGAGGTCTGTTTCCTGACTGCTTCCAAACA
AACGAGGGATACTACTGAGCAGGATGAAGTATGATCATGTGCATTGCTTA
GTGATATATATATATACTTATTTTCAGTATATACTTTGTTCTGTTAAGTA
GTGGACTAGTCTGTACTCTGTAGTCCTATGCACAGGAAGAAACTATGTCC
TTTTATACTGGTGTATCTTGAAAAAGGCTTCCAGTAGCTTGTGTCTGAGG
ACCAACCCATGGCTCCTCTTTTTTCTTCCATCTGTAACTTCTATTGAGTG
TTCTTTTTTAACATGAAAGTTTCTTTTGATGCATCCTTCCTATTTCTTCT
GCTGCAGTTGCCTATTGAAGCTGTGTTACATCATATTTTAGAAGCTCCTG
GGCTCCGTGAATGGTTTGAAAAAGCCCCTGAAGTGGGAAATCCTGATGCT
TTGCTTCTTGCTCTTAAGATCCGTTTGAAGATCTCTATCGACAATGATGT
CTTTGGAAAGCTTTTGCCTAATCCATATAGCTCTAGCAACCTTTTTTCCG
TCGACCATCTTTCCTCTATTGCTAATTGCCTAAAGGTTATATCTACATTT
CTTTGTGCACAAATGGAGATTTAAAGCTATCTTTCTCATATTGTATAAAA
CTGTATGCAGGAATCCACTTTCTGTCAGCCCCGAGTCCATAATGTATGGC
CTTCTTTACTTGACATTCTCCTACCGAATGTTGCTTCAAAAGATGCAGAC
ACAGCTTCAGGTTCAAATGTTGTGAAAAAGCCCAAAAGGCATCGCAAGTC
GAACTCATCTGAAGAAGACATTGAGAAAAACCTTCGATGTTTTTGGGAAA
CTATTATTGAAGAATCCCTGCTTTTGTCATCTCATGATCGTAAACATTTG
GCTTTTGACATTCTTCTTCTTATCCTTCCAAGGCTTCCTATAACTTGTGT
GTCAATAGTGCTGTCTAGCAAATTTGTCCAGTGTTTGATGGATGTACTTT
CAACTAAAACCTCGTGGCTATATAAAGTTGCCCAGCATTTTCTCAAAGAG
CTGTCGGACTGGGTAGAATATGATGAAGTTAAAAGAGCAGCTGTAATAGT
ATCACTGCAGAAGCACAGCAATGGAAAATTTGACTGCATTACACGTACAA
AAACAGTAAAAGATTTTATGGCAAAATTTACCACCGAATCTGGCTGCATG
CTGTTTATTCAGAACTTGATGGACATGTTTTTGGATGAGGGACTTGTCAC
TGAGGAGCCTTCGGATCATAGTCAAACAACTGATGACAATTCAGAAATTG
GTTCAGTGGAGGATAAGGATTCTGCTGGAACACAGGGAACCTCCGAATTT
TTGAAAACTTGGGTTATTGATTCTCTTCCCAGTGTCTTGAAGCATTTAAA
GATCGATCAAGAGGCAAAGTTTGGTGTTCAAAAAGAAATTTTGAAGTTCT
TAACTGTCCAAGGTTTATTCTCTTCATCACTTGGAACAGAACTTACATCC
TTTGACCTAAAGGAGAAGTTTAGATGGCCAAAGGTTCCGACATCTAGTAC
TCTTTGCAGGATGTGCATTGAGCAGCTTCAGTTACTATTGAAAAATGCTC
AGAAAGGAGAAGGTCCTCGCTCTGTGGTTGGTGGCCTCGAGGCAAACGAT
CTTGGATCTTATTTTATGCGATTTTTTAGCACATTGTGTGAGATCCCTTC
ACTGTCTCTCTTTAGAACTCTTAGCAACGAGGATAAAAAAGCACTGAAAA
AATTGCAAGCAACAGAAATTCACCTTTCTAGAGAGGTACTCCTACCTTTC
CCTAACTAGATCTTCGACACTGATTTCTGACCTTGGTTTGGTGAACTCTT
TTTGTAATACCTCGGTAGTGGCATATATTCTGGAAGGAATTATTGAGCTG
GGTGAAATGTTTAATTTTTAAAAGTTTTAGTGCCAAAGACATTAATTATG
CAGAGTCCTAACATCAGACTTGAATGAAGAGTTTGATTACTTCAATACAG
AACTATAAACATTTTACATTATATGTAGTGTCAGAGCTTCTAAGAAACTT
CAATTGGAAGTTTACCTGATTAACTAATTAAGTGCTAATAATCTGTTTGT
TACTTGCGTACATCATCTTAAGTTTCATAACTACTGCAGGAGAGGAATTG
TGGTCTCAGCACAGATGCACGTAAATTGCATTCTCTTAGGTATTTACTCA
TCCAATTGCTGCTCCAAGTTCTGCTTCGTCCAGATGAGTTTATTGAAGCT
TCATCTGAACTTATCATTTGTTGCAAGAAAGCTTTTCCCTCTGACGATCT
TAATTTTTCTGGAGATGATGAATCTGAAGATGACGGGACACCTGAGTTGA
TGGATGTCCTTGTTGATACATTACTTTCTTTACTGCCTCAGTCATCAGCT
CCTATGCGGTCTGCCATTGAACAGGTGAGTTCCAGTCTAGGTTTTGCTGT
AATCACTTAACCGGAATATTTGTGTACTTTATCTGTTAAGCCCTATATAT
ATATTTGCACTAAAGTTATGATTCACTTAAATGATTGAGATCAAATTTAT
GTTTATAATGACTGTTGATGGATTTTTTTCCAAAGCAAAAGGCCCTTTTT
GGTGAAGTCTTGAAGACAATAGACTTTATATTGGTTTCTGAGGCAGTATG
TTCTTTATGAAAGATATTAAAGTTGACATGGTGGATTTTTTTTGAAGTAC
TTATTTATGAAATGTTGCAGAAGGCCTTGACTTGAGTTGAGTTGCCTGTT
CCAGTTAAAGTTATTCACCTCTGTATTATACTCTTGTAGGTATTCAAATA
TTTTTGTGATGGCGTCACGGATGATGGATTGCTTCGGATGTTGCGTGTTA
TAAAGAAAGATCTGAAACCAGCTAGACATCAGGATGTAGACAGTGAAGAT
GATGAAGAAGACGACGATGATCTTCTTGGAATTGAAGAAGCAGAAGAATC
TGATGAAGGTGAGACAGCTGAAACCGGCAATAGTGATGAAGAATCTTTAG
ATTCTGAGGCAGTTGATGGCAGCCAGCTAATTGGTAAAGAAGTTTCTGAA
GCCCCCGATGATTCTGATAGTGGAATGGATGATGATGCAATGTTCCGCAT
GGATTCCTATCTTGCACAAATTTTCAGAGAGAAGAAGAATCAGGCTGGAG
GGGAAACTGCTCAATCACAGCTTGTGCTCTTCAAACTTCGCGTCCTCTCT
TTGTTGGAGATTTACCTACATGAGAATCCTGGTAAATTACTTTTCCAAAA
TAATAATCTGCACGTCTTATTTTATGACCTGAATATAATCTTTCATCTCC
TATACTTCATAACTAGATGAAAAATGATTAGGTTGGCCATCACATCACTG
CTTTGTAAAATGCACCAAGATAATATTCAGAAGCATGCGTCTGATAGATG
GAATAAAATTTGTTCCATAGTCATTGAACAACTTAGATATGGCCTTAACT
TGGGAAATGGAAGATATTTTATTCAGAATGTGTACCTAAGCAGAAGAATA
TTTTTGAATTCGAACCAAATCTGATCATAGTAGTGCTGTACTGCTGTTTG
CATATGTTAGACTCAATTTCACCCCTAAATAAAAGTATGACTTTGCCGGA
AGGTTTTGGGATGGCAACGAGTAGTTTTGGATTGGGATTTGGAAAATCCA
TTCATCAGGTTTCGGATTGTATCAGGTTTTTTCGGGAAAAAAGCTGTAAT
CAAGTCTAATATTACTGGTACAATTTCACAACAATAATCATATATATAAC
AAAATTGAAATTGTGAATGATTAAGTTAAATAAAACCTACATATATTACA
CCAATTAAGATATCAAGGCATGATCAATTAATAATTAATACTTCACTGAT
AAAAAAATTGAAACATGACTGTAAGATTGCAAGCGTCAGATTATAATCAT
ATTAAACATTAAATATACACGAGAGGACAAGGGATTTTGGTACTTGATGC
TTTTACATCTTGTCAATACAATTTTTATTAATATGTTGAACCTTAAGTTT
AATTAGATGCTTTTTTGTAAATGATTGGAAAATCATGACCCCTCTATGAA
AAAGCAAACATAGCTGTGACCATTTTTGTAAATAATTGAAATATCTATAT
AACCAGCGTTGTTCAACACCTGTACGAACTAGGGTTCAATACATTTTATA
TTTTTGTCAATAATAAAATTACTTTTTAAACCTTAGTATGTAAATTATTA
TACAATGTTACAATTAAGTAAATTATACTCTCTCTGTCCCAACCATTTCT
TTACACTTTCTTTTTTGGGATGTCCCATCCAATTCTTTACATTTCAAAAC
TTACCAAATGTAGCAAAATTTTATAATATAAAAATCAACTATCCCACCTA
CTCTTCTTCACATGGGTCCCACCACTATCCTCACTTTTCTTACTTTTCCA
CTCTTACTTCACAAATGTTCTTAACCTCCATGCCCAATATGTAAACATTT
GGGTGGGACGGAGGGAGTATTGGATAGTTAAGTTTCATAATTATTTTGCC
CTAATCTTGAAATGTTGAAAATAGTTATTAATTATTTGTTCTATTATATT
AAAACATGAACTAGAGATAATTTGTTACTATGTTGGTTGGTATAATGGGT
CATATGTGCTTTTAAAATTGTGAATTATTTATTTTATGTTAACTTTTTAT
GTTTTTTTTGACAAAAATCTTTTTCAAAGGCTCCATAAGAGTTTGTTTTT
AATGTGCATATAGGAGTACAGATTTTTTTTATTTTATTTAAAGTTTTATA
TTGACAATATGGCTTTAAATATGTAATCAGAAATCTAATGGAATTACAAG
TATTACCAATATTATAGTTCTATTAGAATTCCACTTCGTACACTAAAATG
ACAATAGATGTTATTATTTATCTTTCGGTTATTTTTATATTGAAGATACC
ATGTAGAATATATCTCATGAATTTGAGTTATTAGTCACCTTTGTAATTTC
CAGATACTATACAGTAGTCAATTTCCCCAGTCCAGTTCTTTGCAAATATA
ATCATCATATTTCTAGTTTTACTGGAAAAAACGTATAATGTGGATCTATT
TCTTGGGATATAATGTAGATTAACTTAAATCTGTATTATTTCCTTTTTCT
ACATGGGTTATGTTACACAAGTTTACTGTTATACAGGTAAGCCGCAGGTG
GTGAAAGTGTTTACCTACCTGGTCCAGGCATTTGTTAATCCAAATACGAC
AGAAGGCAGTGAACAGCTTGGTCAGCGTATATTGGGAATATTGCAAAAGA
AGATTTTTAAAGCGAAGGAGCATCCAAGAGGTGAAGCAGTTCAACTGTCC
ATGCTTGAGTCTTTGCTAGAAAAGAATTTAAAGTTGGCATCAAAACCATT
TAAGAAAAAGAAAACTGCGCCCAACCCTTCAAAGAAAAAGCAATCAGCCT
CTTTTAACAGATACAAAATGATAAAAAATCTTGCTCAAAATTCAACATTT
TGGATACTAAAGGTGATTGATTCAGGTAGTTTTCCAAAGTCTGAACTTCA
AAGGATCTTTGATATCTTCAAAGGGGTTTTGGGTTCATATTTTGATAGTA
AAAAGTCTGATTTGAAGTGTGACTTTCTGAAAGAAATATTAAGGAGGCCA
TGGCTTGGGCATCATCTCTTTGGATACCTTGTAAAGAAATGTAGTAATGC
GAAATCAAAGTTTCGGCAAGTTGAAGCCCTAGCTTTGGTCACCGAGATAC
TGAAATCGCTTGTATCTGTCAATGCTGATGGAAGTAGCCAAGATCTCTCA
AAGAAGATGCTGAAAAGTCATATTTCAAAACTTTGTCATCTGATAAAGGA
ATTGCTGACTAATATGCCAGATAAGCAGGCTAAACGGGCTGAAGTGCGGA
AGTTCTGTGGAAAGGTCTTCCAAACTTTAATAAGCCTTAAACTCTCAGCA
TCTTTTCTCAAATCATTAGAACCAGAAGTACATGCTGCTTGTGAGGCACA
ACTTGGCGAAAGTTTTCTTGCATTGAAAAGGCAGGAGTAAAGTATTACAT
CAGGTGCTTGACAGTTAAATTTTGAGTGCATTGCTGATACACAGGCAATT
TGCGGAACAGTACTTCATAGATCTCCTGACCTTCCTCGGTCAATCCAGCG
TCCTTGTCAGAAACCTAAGTACCTGTTTGAGAAATGTTCAACATTCTGTA
TGTTTCCCTTTACGTATCTGTAGTCCTGTCATGGCTATATTATTCAGTAT
GAATTCATTTTGCTGGTCTGCTAGTAAACCATATGTGAACAAGACTAAAA
AGAATTATACTTCTCATATTTTGTATCTCCATAGATTGAAATTTTAGCCA
TTTACTAGTAATTTAATGTAGCATATGCCTTTGCTGCATGCTTTCTTGTA
TGCACTTCTGAGTTCTGCAATTTGGTTTAGGTGGTCTAATTTTCTTGGAG
GGATGCTCCTGTTCTTTTATTGCTGTAAAATACGCTTAATTATCGAGACC
TTACTGCCCTCCTGCAAAATTATAATGCTAATGGTCTTCAGTTGGGATTT
TAATGTATGTAGCATATGTCAATGGTTTCTGTACTGCTTGGCTGTACATG
GAGCAATAAATTAGATCGGGTCATATTTGTGATATCCCAGAAGACCAGAA
GTTGATAGTTGGGGGTGCAGTGAGGTTTACTCTCTTTATTTTCAACAGGG
AAGAATAATATCAACACTTGCTCAGAGAATAGAGCTGACTAGCATATCAC
TTCACTTGCGAACATTATCCAAGGGAATTTGGTCCTCTATTAATTATTTT
GCAACTCAATCTGGTACTACTCTCATCTTACCCTCCTAGCTGAGTTCCTT
CTAGGTATGAGCAGTTCTTATGACCCAGAAGAAAGAGCGACGGTAATGAT
TGCCAGTCCTGAGGATATGCTTTAATCCTCAGCATCTACCGTCAAGTTTT
CATGCCCACTGACAAATAACAGTACACAGAATTAAGAGGCGAAGCTGCTC
AAAAATTATTTAAAATTGTTTGTAATCAGTACACGAGAAATCATACAACC
AAAGCATCAAACCAATAACTTATCCATGCCCAGTCTCTTGGCACTGGATG
ATGTGTTTCCTTTGATTCTTCATCTTGGCCTCAAGTACGGGTTCATTTGA
CATTGAAATAAATTACCAATGCTACAACAAACTCAACACTTCTGCAAGTG
TTCTGCAAATGACACTTCAAAATTTAGCTCACTCGACAGCAAAGAAGCAA
GGCTACGGATGCAGGACTGCAGTAGTATCCACAGATTCAACACAAACGAT
AATATGGAAGATTCGGATGCGGGATCATATGGCATCTATGCAAATAATAG
AAAATTTACATTATTATAGTATGCCAAAATCTCTTAACAGAACTACATAT
TTTGAATCAAATCAAATTCCTAACTTATACATCTAAAAGACAAAAACACA
AGATATTTAGATTAGTTACTCTGCTAACTAGAATTAGTACTTTTACCTTT
TTGTAAACAATTACTTGACACTAATTTGAAGTACAATTTGTTGTTGAAAC
AATATCATTTGGCATTGTACAAGTATCCTCACATCAGAGTGTCCACGAAT
CTGACACGGGGATTCATATGGGATTCGAGTGTCTCTGACACAGGAATCCA
TTGGGTAACCCACATATCCTCGACACCCACATATACCACTATTGTCATCA
CTATGAGGATGGTAGTTACCACATGATGCCAGCCCAACATATAGAGAGGA
AAGTTTCCATACCATGCCTTAGTGGCTTCAGCCAGATTTTATTCATGACT
GCACTTCATTCTCTGCATCAGAGTCACTTGCTGAATGGTTCCCGGAATCT
GAATCTGTTGACATGGCATTATCTAATTAACTCTACTATAGAAAAAACCA
CAAATAAATTTTAATAAAGAAAAATGGACTTAATATACCACCAGAAGAAG
AATCACTGCTGGAACTGCCTGAACTACTTGAGCTACTACTGGCATTATCA
TTCCCATTCACGTTTCCATCTTCATGAACATTCCCACCACCATCTTTCTC
GATTTTCTCATGGGGGGAACTGCTTTCCCGCATCTCATCACCAATGTCCA
CATCCCCATCGCCATCTCCTTTCTTAATATTTTTTGCTCCATCATTTACA
TCACTAGCAAGTGCCTAGTATTCATCACCGAAGCACGATCAGAAACCAAT
AGTATCCTATACATATATATATACCAATATTTCAAAGAACAAGTTATTCA
CATTACCTCATCAGTATCAGCTGTAACCATGGGAGCTGTTGATAAGTTCT
CCATAAGGGCTTGTCGCTTCGTCTTACTTTCAAGCTTCTTCCAATTTGTC
ACGAATCTATCAAGCTCCCAAAGAGTTTCTGTATCGAGGGCCTCCATATC
GAGCTCGATTTCATCACCTGCCTGTGCCAAACGTTCATTTCTTTTCCGTA
TAATTTGCACCAATTGTGGCATTTTCTCTTGAGGCAAATTTTCCAACCCA
ACTCCCAACTTCTGCTTCTCCTCCATTGTCATAGCTCTCTTATTAGGGTC
CTTTGCTTTTGGCTTAGGCTGCTTTGTTGTAGGGGCAGCTTTTACTGACC
CAGTTGACTTCACAGGTTGCGAACGCGCCGGAGATGGAGTCAACACGGGT
AACTGCTTTGTTTGAGGAGGTAACTGCATTGACCGAGTATCCAAATTGGC
CTGATTAGAAACACTAGACTGAACCAAAGGCTCAGGAATCACCTCAGGCT
TCACCGGAGGAATCGAACTAACTAAATTAGTCTTCGGCTTCTTGCGTCTC
TCTGAACTAGTAATCTCATTCCAAGAACTTCCACGGCAATCATCATCCCC
ACTACGAACCACATCTTTCTCAACTCTACTATCCAATTTCTCTTGAACCG
GTCTAAACATATCCTCAAACTGTGACAAAAGCTGAGCAGCCATGGAATGA
ACTTGATCCGTCTTCGGATTATACAACATAGCATTATTAAAGGTCAACCT
CACATCCGAAGCAAATTGACTAGGTGACGAATACAAATTCTTAGCCAAAT
ACGCTTTCACCGTCCCCAAATCCATCGGCTTCTTAACAATATGATGATAA
TCATATAAACCCAAACCACTAGCATCAACCGGCTTATTAAAAACCCAACT
ACTCTTATTCCTCATCAATTTCGTCAAAATTTCCCTACACATCTTCATCA
AATCATCAAAATCACCACCATTCCACTTCGCAACCACTGGCACCGACCTC
TTCTGGCCCGACAAATTCGCTTCATTTCCCGAAAATGCTCCGGATTCAAT
TCGATCAATCAAGCTGCGAACTTTCTGAAGCTCCGTCTCCAGCGTCCTCT
TCAACTCTTTCAATCCACTCTTCGAACACCCCGAAGCTCGTTCAATTAAA
GGCACGTCTAACTCAAATTGCTTCCTTTTCTGCTTCAATTGCTTTGAATT
AGGGTTAGGGTTTGTAGAATTAGGGGCCAAATAGTTAAGTTTTCTTCCCA
TAAATTTACCGAGTGATGATTTTCCCCAGCTTGATTCGCTCCGGCCAGAC
TTCATCTCTGAGCTATATCTCCGGCGAAAATATATATGCAGACAGAACGA
CGCCGTATGCTCAAGTGAGTTTTTATGTACACAAGTAAGGGGGAAGGGGG
CTGGGTCTTGGGCTTGGGTTGTGAGCGAGGAGTAGAAGGCTTGGAGTTGG
GTTATAAAGAGAGATGGATCTGCCCGAAAAAAAGACGGGCAGGATCGTGG
CCGTTGATTTTTGATCGGACAGTGTCTGACGTGGACGAGCAATTGAAAGT
TATTGGTACTTGACAGACTGGACTTGTGAAGTTTCCATAAACTTGTTTCT
AGGATTTTGTTTCATTCTGAA
Sequence Length:
12721
Sequence Checksum:
be750fe9b2b698298bb4ee1beace6196
View location in JBrowse:
Cds:
>DCAR_021895cds ATGGAGGAACCAAAAGTGATGAAAACCCAAAAACCCAAGAAGAGAGAACG CCCAATTGAGCATGAATCAGCCTCTAATCCGGACCCTCTTAAACCCATGG AAAGAAAAAAGAAAAGAAAAGCCATGGCTAAAGAAAAGCACAAATCTTTG AACCCCCCTTGTGAATTGAAGCAAGAATTGATTGTACCAATGGAGACTCC ATCTTCTTCATCTGGTAATAATGGGTCGCCTGAATTACATCTTGGGGTGT TTAAAGATCTTGGGAATGGTGATGTTGGTGTCAGAGTTGCTGCAGCTCAG AGGTTGGTTTTGGAGTTGAAACAAGTTCAGAAAGCTTTTGATAAGAGTGA TGAGAAAGATGAAGATGGTGATGGGTTGATGTTAGAAGCTGAGAAAGATG ATGGGTTGAATAATTGTGCCCCGTCTGTTAGGTATGCTGTTAGGAGGCTC ATTCGGGGTGTTTCGTCTTCTCGGGAGTGTGCTAGACAAGGGTTTGCTTT GGGTTTGACTGTTTTAGTTGGTGCTCTTCCTTGTGTAGAATTGAACTCGT TAATGAAACTGATTGTTGATCTATTAGAAGTCTCTTCTTCAATGAGGGGT CAGGATGTAAAAGATTGTCTCTTGGGTCGCTTGTTTGCTTATGGTGCAAT TGTGCGATCAGGAAGACTAACCAATGAGATGACTTCTGATAAGAGTTATA TTTACGTCAAGGATTTTGTTAGTTCTCTCATATCCCTTGCATCCAGAAAG CAGTATTTGCAAGAGCCGTCTGTCGTAATTATCCTAGAATTGGTTGACAA GTTGCCTATTGAAGCTGTGTTACATCATATTTTAGAAGCTCCTGGGCTCC GTGAATGGTTTGAAAAAGCCCCTGAAGTGGGAAATCCTGATGCTTTGCTT CTTGCTCTTAAGATCCGTTTGAAGATCTCTATCGACAATGATGTCTTTGG AAAGCTTTTGCCTAATCCATATAGCTCTAGCAACCTTTTTTCCGTCGACC ATCTTTCCTCTATTGCTAATTGCCTAAAGGAATCCACTTTCTGTCAGCCC CGAGTCCATAATGTATGGCCTTCTTTACTTGACATTCTCCTACCGAATGT TGCTTCAAAAGATGCAGACACAGCTTCAGGTTCAAATGTTGTGAAAAAGC CCAAAAGGCATCGCAAGTCGAACTCATCTGAAGAAGACATTGAGAAAAAC CTTCGATGTTTTTGGGAAACTATTATTGAAGAATCCCTGCTTTTGTCATC TCATGATCGTAAACATTTGGCTTTTGACATTCTTCTTCTTATCCTTCCAA GGCTTCCTATAACTTGTGTGTCAATAGTGCTGTCTAGCAAATTTGTCCAG TGTTTGATGGATGTACTTTCAACTAAAACCTCGTGGCTATATAAAGTTGC CCAGCATTTTCTCAAAGAGCTGTCGGACTGGGTAGAATATGATGAAGTTA AAAGAGCAGCTGTAATAGTATCACTGCAGAAGCACAGCAATGGAAAATTT GACTGCATTACACGTACAAAAACAGTAAAAGATTTTATGGCAAAATTTAC CACCGAATCTGGCTGCATGCTGTTTATTCAGAACTTGATGGACATGTTTT TGGATGAGGGACTTGTCACTGAGGAGCCTTCGGATCATAGTCAAACAACT GATGACAATTCAGAAATTGGTTCAGTGGAGGATAAGGATTCTGCTGGAAC ACAGGGAACCTCCGAATTTTTGAAAACTTGGGTTATTGATTCTCTTCCCA GTGTCTTGAAGCATTTAAAGATCGATCAAGAGGCAAAGTTTGGTGTTCAA AAAGAAATTTTGAAGTTCTTAACTGTCCAAGGTTTATTCTCTTCATCACT TGGAACAGAACTTACATCCTTTGACCTAAAGGAGAAGTTTAGATGGCCAA AGGTTCCGACATCTAGTACTCTTTGCAGGATGTGCATTGAGCAGCTTCAG TTACTATTGAAAAATGCTCAGAAAGGAGAAGGTCCTCGCTCTGTGGTTGG TGGCCTCGAGGCAAACGATCTTGGATCTTATTTTATGCGATTTTTTAGCA CATTGTGTGAGATCCCTTCACTGTCTCTCTTTAGAACTCTTAGCAACGAG GATAAAAAAGCACTGAAAAAATTGCAAGCAACAGAAATTCACCTTTCTAG AGAGGAGAGGAATTGTGGTCTCAGCACAGATGCACGTAAATTGCATTCTC TTAGGTATTTACTCATCCAATTGCTGCTCCAAGTTCTGCTTCGTCCAGAT GAGTTTATTGAAGCTTCATCTGAACTTATCATTTGTTGCAAGAAAGCTTT TCCCTCTGACGATCTTAATTTTTCTGGAGATGATGAATCTGAAGATGACG GGACACCTGAGTTGATGGATGTCCTTGTTGATACATTACTTTCTTTACTG CCTCAGTCATCAGCTCCTATGCGGTCTGCCATTGAACAGGTATTCAAATA TTTTTGTGATGGCGTCACGGATGATGGATTGCTTCGGATGTTGCGTGTTA TAAAGAAAGATCTGAAACCAGCTAGACATCAGGATGTAGACAGTGAAGAT GATGAAGAAGACGACGATGATCTTCTTGGAATTGAAGAAGCAGAAGAATC TGATGAAGGTGAGACAGCTGAAACCGGCAATAGTGATGAAGAATCTTTAG ATTCTGAGGCAGTTGATGGCAGCCAGCTAATTGGTAAAGAAGTTTCTGAA GCCCCCGATGATTCTGATAGTGGAATGGATGATGATGCAATGTTCCGCAT GGATTCCTATCTTGCACAAATTTTCAGAGAGAAGAAGAATCAGGCTGGAG GGGAAACTGCTCAATCACAGCTTGTGCTCTTCAAACTTCGCGTCCTCTCT TTGTTGGAGATTTACCTACATGAGAATCCTGGTAAGCCGCAGGTGGTGAA AGTGTTTACCTACCTGGTCCAGGCATTTGTTAATCCAAATACGACAGAAG GCAGTGAACAGCTTGGTCAGCGTATATTGGGAATATTGCAAAAGAAGATT TTTAAAGCGAAGGAGCATCCAAGAGGTGAAGCAGTTCAACTGTCCATGCT TGAGTCTTTGCTAGAAAAGAATTTAAAGTTGGCATCAAAACCATTTAAGA AAAAGAAAACTGCGCCCAACCCTTCAAAGAAAAAGCAATCAGCCTCTTTT AACAGATACAAAATGATAAAAAATCTTGCTCAAAATTCAACATTTTGGAT ACTAAAGGTGATTGATTCAGGTAGTTTTCCAAAGTCTGAACTTCAAAGGA TCTTTGATATCTTCAAAGGGGTTTTGGGTTCATATTTTGATAGTAAAAAG TCTGATTTGAAGTGTGACTTTCTGAAAGAAATATTAAGGAGGCCATGGCT TGGGCATCATCTCTTTGGATACCTTGTAAAGAAATGTAGTAATGCGAAAT CAAAGTTTCGGCAAGTTGAAGCCCTAGCTTTGGTCACCGAGATACTGAAA TCGCTTGTATCTGTCAATGCTGATGGAAGTAGCCAAGATCTCTCAAAGAA GATGCTGAAAAGTCATATTTCAAAACTTTGTCATCTGATAAAGGAATTGC TGACTAATATGCCAGATAAGCAGGCTAAACGGGCTGAAGTGCGGAAGTTC TGTGGAAAGGTCTTCCAAACTTTAATAAGCCTTAAACTCTCAGCATCTTT TCTCAAATCATTAGAACCAGAAGTACATGCTGCTTGTGAGGCACAACTTG GCGAAAGTTTTCTTGCATTGAAAAGGCAGGAGTAA
Pep:
>DCAR_021895pep MEEPKVMKTQKPKKRERPIEHESASNPDPLKPMERKKKRKAMAKEKHKSL NPPCELKQELIVPMETPSSSSGNNGSPELHLGVFKDLGNGDVGVRVAAAQ RLVLELKQVQKAFDKSDEKDEDGDGLMLEAEKDDGLNNCAPSVRYAVRRL IRGVSSSRECARQGFALGLTVLVGALPCVELNSLMKLIVDLLEVSSSMRG QDVKDCLLGRLFAYGAIVRSGRLTNEMTSDKSYIYVKDFVSSLISLASRK QYLQEPSVVIILELVDKLPIEAVLHHILEAPGLREWFEKAPEVGNPDALL LALKIRLKISIDNDVFGKLLPNPYSSSNLFSVDHLSSIANCLKESTFCQP RVHNVWPSLLDILLPNVASKDADTASGSNVVKKPKRHRKSNSSEEDIEKN LRCFWETIIEESLLLSSHDRKHLAFDILLLILPRLPITCVSIVLSSKFVQ CLMDVLSTKTSWLYKVAQHFLKELSDWVEYDEVKRAAVIVSLQKHSNGKF DCITRTKTVKDFMAKFTTESGCMLFIQNLMDMFLDEGLVTEEPSDHSQTT DDNSEIGSVEDKDSAGTQGTSEFLKTWVIDSLPSVLKHLKIDQEAKFGVQ KEILKFLTVQGLFSSSLGTELTSFDLKEKFRWPKVPTSSTLCRMCIEQLQ LLLKNAQKGEGPRSVVGGLEANDLGSYFMRFFSTLCEIPSLSLFRTLSNE DKKALKKLQATEIHLSREERNCGLSTDARKLHSLRYLLIQLLLQVLLRPD EFIEASSELIICCKKAFPSDDLNFSGDDESEDDGTPELMDVLVDTLLSLL PQSSAPMRSAIEQVFKYFCDGVTDDGLLRMLRVIKKDLKPARHQDVDSED DEEDDDDLLGIEEAEESDEGETAETGNSDEESLDSEAVDGSQLIGKEVSE APDDSDSGMDDDAMFRMDSYLAQIFREKKNQAGGETAQSQLVLFKLRVLS LLEIYLHENPGKPQVVKVFTYLVQAFVNPNTTEGSEQLGQRILGILQKKI FKAKEHPRGEAVQLSMLESLLEKNLKLASKPFKKKKTAPNPSKKKQSASF NRYKMIKNLAQNSTFWILKVIDSGSFPKSELQRIFDIFKGVLGSYFDSKK SDLKCDFLKEILRRPWLGHHLFGYLVKKCSNAKSKFRQVEALALVTEILK SLVSVNADGSSQDLSKKMLKSHISKLCHLIKELLTNMPDKQAKRAEVRKF CGKVFQTLISLKLSASFLKSLEPEVHAACEAQLGESFLALKRQE*