Resource Type:
Gene
Organism:
Name:
DCAR_023618
Identifier:
DCAR_023618.gene
Locus Tag:
DCAR_023618
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_023618, is a part of gene, DCAR_023618. |
| The genetic_marker, MK011338 7_3275230, is located in gene, DCAR_023618. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_023618 | DCAR_023618.mRNA | mRNA | DCARv2_Chr7:3263184..3276586 |
Sequence:
ATGGCAACGCCGTCGTCGTCATCATCGCCGGCGACACAAATTATGCTGGC
AATTTACGAGAAGAAAACAACTGCAGTCGATCTTTACCGTCCACTCCGCA
ACTACATCGTCTACAATTACTCCGAACGCGAAGCTCAAAACCTCGAAGAC
GATCTCCAAACCCTAAAACAGTACCGCACAGACATCGAGCGCTCATCTCC
CTCTGATTCTCTCTCATCTCGCCGAGATCTCCTCATCAACTACTTCCGCG
CCCTCACCGCAATCGAATCACGCTTCCCTATCTCTCCCGAGACCGATCAC
ATCAACACGCTCACGTTCGTGTGGCACGACGCGTTTAAGAACAAATTGAA
GGCGTCGCAGCAGAACATTCACTTGGAGAAGGCGGCGGTGTTGTTTAATT
TGGGAGCTGTGCATAGTCAGTTAGGGTTAGGGTTTGATAGAGGGGAAGTT
GAGGGGAGGAAGAACGCGTCGCATTCGTTTATGAAGGCGGCTGGGGTTTT
CGCATTTTTGAGGGATAATGTGGCGATGAAGGCTTGTATGGGGAATTCGA
CTACGCTTGATGTGTCGGTGGAGTGTGTGGGGATGTTGGAGAGGCTTATG
CTTGCCCAAGCTCAGGAGTGTGTGTTTGAGAATACGATTGCGAAAGGGAG
CAGTGCTAGTGTTTGTTCTAAGATTTCGAGACAGGTGAGTTCTTGTATTG
GTTAAATTATAGTGTTGTCATCGTTGTGGGCTGTATTGGATTTGATGATC
ACATAGATTGATGGAATTAAGAGTTAAAAGTCAGAGTCATACAGTTACCT
CATATGCTAAATGTGATGATGGAAGTAAGTCTAGTGCAATGTGTCACTAC
AGTAATGGCGACAACTATTTGGGGGGGGGGGGGGGGGGCTAGTTGATGTC
CAATGTCTTGTTTGTCTAGTTGGAAGTAAAATTACTAATTTGAACTTGTT
TATATTGGCTAGGTATGTTACATTTTTGAGATCATGTTCATGCTATGAAA
TGCACCAACCTCATTAAGATATATTCTTTTTTTGTTATTCGGTGCTACTA
CACCAAGTCATTCCCAGAAATTATATTTGCTACTTATTTGAGAAGAAGGG
TCTGCATTTTGGATTAATGTCTAGTACAAGTATAGAATTATATAGGTGTA
GTTCAAAAGATATCAAGAATTCAAGATAATGATGTTGCCATCAGTCCACC
TTACTGTGAACCCTATACAAATTTTATTTGCTGTCGATGTCAGAATATAT
ACTCATTAAAATCAATGCGATTGTAGGTTGGGATCTTCTATGAGGAAGCA
TTGGCTGCATTAAAAGTTGCACCTCTTAGCCAGCATTTTGAAAAAGCTTG
GCATTCACATGTCCAGTTAAAGGCAGCTTTGTTTTATGCTGAGGCTTGCT
ATAGGTATGGTTTGGAGCTTCATGAGAAAGAAGAGATCGGCGAGGAAATT
GCCCGGTTGAAGAGTGGGCTCAATGCTTTGTCTGAGGCAAGAAAATCATC
TCCAAAGGGGGCTGCTCAGCAGCTAATAGATGCATATACTATTTTAGAAG
GCAATCTAAATCGCAATCTTGAAAGGGCTGTGAAGGAGAATGACAGAGTC
TACCTTATGAGGGTTCCACCAGCTAGTTCTTTACAACCACTACCTGCATT
TCAAATGGTTAAGACCATGCCAATGACTGAGGTGTTTGATGCAAGCAAGG
AAAAGATGTTTGCTAGTCTTGTTCCTGACAGCAGTGCAAAAGCTCTTTCC
AGGTACACAGAAATGGTTGATGATGTCATCCGAACACAAGCTGAAATTCT
ACAGCAGGGCAGTGAGCTTACTCGTGTTAGACTTAAGGAAATGGACTTAC
CTGAGTCGATTTTGGCATTAGAAGGGCATTCTGCTCTGCCAACTGCTCTT
AAAGAAGATGTGGATGCAGTGCAAATTTGTCAGGATCTGGTACTTTCCTG
ACCTAGTTTGAGACTTTGTTTGGTGTTTTCTGTGTATATAAATGCAGAAA
TAGAGTAACAGCAGAGAATTGAGAGGAGAATAGAGAGAAATAGAGGTGAG
AAGCAGAGTTTAGATGAGAAGAGAAGAGAATTCTAGAGAGAGAAAGCAGT
TATAGAGAGAGAAGCAGAGAGAGAGAGGTTTTGGAGGCAAAAGCCAATTT
TCATATCATATCTGCAAATGAACATTACACCAGTACTTATAGCTACTAAC
ATAACAGACTTGCATACTCATACAGCACAGAATGACTATAGTACCCTCAC
TTCTATTACTACTACTATATATTCTACTAATGCTACTGCAGTTGCAGTGC
AGTTTCCTGACATTCCCCCCTCCTTCAATCAGCCCATGTCCTCATGGCCA
CAAAATTCAGGAAAGTTACACTTCAGTAAATCTTCATCTTCCCAGGTGGC
TTCATCCACACTACAGCCTTTCCACTGCACCAGCCTTTGGTATACCATCT
TATGGTCTCTTAAAATGCTCCTAGTCTCCAGCTGCCGTAGAGGTACCAAA
TCAAATGACCCCTGCTCATTGACTTGTGGCAGCTGCTTCTGAACTTTAGC
TTGACCAATAGCTTTTTTCAGTTGAGAAACATGAAAGACAGGATGAACTC
TAGATCTTTCTGGAAGAGCCAACCTATAAGCCACAGATCCAATTTTCTCA
ATCACCTCATATGGACCATAGAATTTAGCAGCTAATTTCAGATTCTTCCT
GATTGCAACAGTTACTTGTCTATAGGGCTGTAGTTTCAAATACACCAGAT
CCCCCTTTTGAAATTCCCTAGCAGACCTCTTTGCATCAGAATAAGCTTTC
ATTTTAGCTTGAGCACTCTCCAACAATTCCTTCAATCTACACCATTGTTG
CTGCTTAGTCTCCAACAATTCCTCTAAACTACTTATGTTGGTATGTGACC
TTTCTTGCCAAGCTAGGTGTCTAGGCTTCATTCCATATACAACTTGGAAA
GGAGTTGAGTTCAAAGTAGTATGGAATGTGGTATTGTACCACCATTCTGC
TGCAGCAAGCCAAGCTGACCAATTCTTGGGCACCTCACTTGTCATATTCC
TCAAGTATTGCTCCAGGCATTGGTTCACCCTTTCTGTACTCCCATCAGAT
TGAGGATGATAGGCTGTACTGAAGTTCAGCCTGGTTCCAGATAGTTTGAA
CAAGTTTTGCCAAAACTCACTAAGAAACAAACTGTCTCTATCACTTACAA
TAGTTTCAGGCAGCCCATGAAGTTTGTAGATTTGCTCAAAGAATATCAAA
GCTAAGCTTTTAGCAGAAACAGGATGAGCTAGAGCAATGAAGTGACTGTA
CCTGCTAAACCTGTCCACTACCACCCAAATTACTTCATTTCCTTTGGACT
TAGGTAAGCCAGTGATAAAGTCCATGGCAATGTCTCTCCAGGGCTCCTGT
GGAATCCTCAGTGGTTGCAACAGGCCAGGATACTTAACATTCTCCCCTTT
ATTCTGCTGGCAGATAGCACATTCCCTAACCCAGTGCCCTATGTTCTGTC
TGATTGAGGGCCAATAGAAGTATTCCATCACCTTCTTAATAGTAGCCCTC
ACACCAGAATGTCCCCCTTGACTGTGACAATGCAATTCTTCAAAAATTTG
ATGTCTTAGGTCTCCTTTACTTCCCAATACCCATTTGCCCCTGAACATCA
ACAATCCTTGTCTGAAATAGTATTCTTGGGGACCTCCTTTATCCACAGTA
ATTGCAGCCACAATTTCTTGAATTTCACTATCCCCTTCATAGCTATTCTC
AATCTGACTCATCCACTTAGGTACCACCTCAGATAGCTGGTGACAGTAGG
CCACTATCTCAAAGTGATCTTTTGGAGAGATCATCACTTCTTTTCCTTTC
CAGCTGAAATGCATAGTGCTGTCCTGATAATTGCACCTTATATTCCCCAA
CTGGTAAAGCCATTCAATTCCCAGAATAAGGTGCCAATCCTTCAATTCAG
CTACAAAAGCCTGAATCTCCATCTCAACCTCCTGCCATTTCAGCTTAAAT
GTAGGACACACAGCTGTACTAGTGAATTCTGCCCCATTTGGCAAAATCAT
GACTACAGGCTTATGTGCCTGAACCTGTAAGCCCAATTCTTTACAAAAAT
CCAAAGAAATCAGATTCAAAGAACTTCCCCCATCTATTAGAACCTGATAA
TTCCTTTCACACCAATTACATGAGAACTGCATTGGTCCTCCTTTTTGCAC
CTCTTGAATGCCCAGAGCAGCTAGCACTACCTTCTGCTCTTGCCAGTCAC
ATTTGTCTTCATTAGGATCTTCATCAAAAACAGGTGCTTCTTCATAAACT
TCTACCTCTTTAACTTCTGCAATCATTAAGAAATTTTGTGGTTTTTTGCA
TTCATGTCCCTTCACAAATTTCTCATCACAGTAGAAACACAAGCCTTTTT
TTCTCCTTTCCTCTCTTTGACTATAAGTCAGAGGCCTGGGTTTGGCACTC
ACAACCTCTGTTCCTTTAACTGGGACAGCTAATGTAGACCTGTTGGTGTT
AACATTAGTTGATTCAGGAACCTGTCTAGTTACTACTTGGGAGCTGAAGT
TGCCCTTGTAAGTGTTTCCCTTCTTAACTTGGTTGGCCTGATTATGCTCA
TAAGACCTGGCTAATCTCAAAGCCTGCTCCAATGTTGAGGGCTCCAACAG
TCTTATCATCCCTCTCACCTCAGCCTGAAGTCCTCCAATAAAATTTTCCA
GGAAATATTCTGGAGTTAAGCTAGGTATTTTGCTTAGCAACTGTCCTCTG
CTTTTCTCAAACTCATCAAAGTAATCCTCCACAGTAGTGGTCTGTTGCAA
TTTCTTAAATTTGTCAAACACCAACTCTGTCTCTAGCTCTCCAAATCTGG
CAAGGAAGGCCTGTGTAAACTGCTGCCAAGTGACTTTGTCTCTTCCCACC
ATAAAGGACTTGTACCAGTACCTTGGAGTTCCACTCATGTGCATTGCTGC
AATGGCTGATCTTCTGTAGTCACTGACTTCAAAAATAGTAAAATATTCCT
CACAATCCCTTAACCACTCCACAGCATCTCCTCCCTCTTTGAGAGATGGA
AATGTTAACTTTAGATGCTTCAAACTATGAGAATCAACTGTCCCTTCATG
ATTGACTCCTACTCCTCCATTATTTAAGTCATCATTCTTCCTTGAAGGCT
TTGCCTTCATCTGTTTCTGCCTCAGCTTAGCAGCATGATCAGGATCTCTA
AACATTCCTTTTGACTGCAAGGTTAGATCAGCTTCCTCATCCATTTCTTC
TTCAATTACCACAACATTTTCATCCTCATCTCCTTGAATACTCATAGCTC
CAGTCAGTTGCTGCATCAACAATCCAATCTGTTCTTGCATTTTTTCAAAC
TTCTGGTCAGATCCTTCCAGAAATCCATGAAATTGTTGTTGATTCATTCT
CCTTGTGCCTTGATCAGAAGTCTCAACTTGTTTGCTACTACTTCTAGTGC
TAATAGTCATACTTTCTTATTCCTTCAATATCAGTACTACAACTACCTGT
AGTTCACTCAGACAATTACTCAAACACCTGATTACTAGCACTAAACTACA
GCACACACCAGAATCAATAGTCAAACCTCTCACAACAATTCTTTTGTACT
TTTCTGTTGTAATAAGCTATAGCAACTATCTATTACTGTAATCTATCCAC
AATCAACTGAACTTCACTCCAAATTCACAGAAACAACCTCACAATCACAG
ATCTGATGAGAACAGTTAAGAAAACAGAGTACCTGACCTGTCTGATCTCA
ACTTCCAAACTACACCTGCGATTCCTGTGATTCTACAACCGCACAGCTCG
CCTTTAACAGCACAGTGATATGGAAGCAGTAGTTGATCGAAATTTACAGC
TCTGATACCAATTTGTCAGGATCTGGTACTTTCCTGACCTAGTTTGAGAC
TTTGTTTGGTGTTTTCTGTGTATATAAATGCAGAAATAGAGTAACAGCAG
AGAATTGAGAGGAGAATAGAGAGAAATAGAGGTGAGAAGCAGAGTTTAGA
TGAGAAGAGAAGAGAATTCTAGAGAGAGAAAGCAGTTATAGAGAGAGAAG
CAGAGAGAGAGAGGTTTTGGAGGCAAAAGCCAATTTTCATATCATATCTG
CAAATGAACATTACACCAGTACTTATAGCTACTAACATAACAGACTTGCA
TACTCATACAGCACAGAATGACTATAGTACCCTCACTTCTATTACTACTA
CTATATATTCTACTAATGCTACTGCAGTTGCAGTGCAGTTTCCTGACAAA
ATTTGTGGTGGCCCTGCTGGTTTAGAAGCTGAGCTCCAGCAGCTTAGAGA
TCTGAGAAGGGTAAACCAAGAATTGCTAGTTCAAACAGAGGAGCTTTTAC
AAAAAGAAGCAACAGAAGATGCACAATTTAGAAGCCAATTTGGTACTCGA
TGGACCAGACCCCAATCAAGCACATTGACAAAAAATTTGCAGGATAGGTT
GAACAGGTTTGCAGCAAATTTAAAGCAAGCTGCAGAGAGTGATACCCGTA
TTGAGCGATCAGTGAGGGAACATTCATCTCTCATGTCAATACTTGATCGA
CATCCAGTATGTTCCTGTATTGTCATTACGTAAAATATATCTGTTGCTCA
TAAATGTATAGTCTTATAATATCAATACATCATCAAGTTAAAGACTTTAA
GGAAGAAAATAAGTTGAGGAAGATTTTGAGAGTTGTATCATCAGGAGATA
AGTTTTGTTATTCCCAACTGAGTTGCATTTTTTGTTTTAGACATGTGCAG
CCATATTGCAAGTAATATTAACCAAGTACTCTGAATAGTCTAATAAGATC
TTAAACTATGCCATTGCCAATGAAGCCTGTTGTCCAAGTATAGCTTGATT
CAATAATTTATTGCGATGTTTATATATGTCATTTCTGAACAAATTTAATT
TTTCAACTGTGCCAGATAGAGTCTGTCCTTCCAACCTTAGGGAGGCCAAT
CATGTCTTTAGACGCCAATGAAGATGCAATATTGGGGGCTTTGAAACAGA
GCTTGGTAATTTAATGTTTATTGTATATTTGTATGAATGTATTGTTGCTT
TAGAATACTTGAAGTTATTAAACTCTTCATATCAGCCACATTAGAGAGTA
GAATTTCATCTTGTCGGAATAATAATTTTACTTTTCTCGGAAAGGAAATT
AACTTATTTTCTATGATAAGTTTACAAGTAAATGTATAAGTTTCCACATG
AATGCTACTAATTTCAGCGTAACATAATTGCATAAAATAAGTTTTATACA
TCATTCCTATTTGATAGATGTTTCAGAAAAAATTCGACATACAAAGTTGT
CATAAACACACTACAATAAATTCTATATTGTCTCCTTTTTTACTTTCCTG
CCCTCATCTCTAAAATAGTATAAAGAAAGAGAAGTATATTAAATAGAGGC
ATTTGGTGGAAAGTAGGTTATTAAATGTACTTTGGATGCATAAAGCGTCT
AAGAAAAAGGAACTGCAGGAGAAGTTTACAACGATCAGCAAAAAGAAATT
GAGGGAGTATATGATGTCGGTGGCAGTGAAAATTTAATATTGATGGTTAA
ACTTTTGCAAAGCTTAATCATTGTTAGGCAAATGAGTGAAAATATATATC
AGCATTTGTGGAATTGTGGTAGTTCGACTTTTAACATGGTGTAATTATAT
AATCTTGCAGATGGGTCAAAATGAGGATAAAGCTGTACCCTCTATTTTCT
CTCTTTCTTATTTACTTGCACTAATTTAATTGATCATTAAAATACCACCA
TTTATGTTAATTGTAATTTTCAATTCCAAGAAGCTCGTGCATAAAATATA
AGATATGGAAATAAAACAAATTAATTCCACCAAATACTGGTCACCAGATG
CCGGTGACTACCAAGTTTTTGACTGACGTGTGTATGTGTTACATAATGCT
TCTTTGACATTCTGTAAATTGATTTTCCTTTCAGAGGCAATTGGAAACTC
TGGGAGCTCAAAGGGCAGGTCTTGAAGACATGCTTAAAGAAATGAAACGA
AAGGTGGGTACTGGAATATCCCTGTAGCTTCTTACTGTTTTCTGGTGATG
TCATAAGTTGGGATGTCATGTATCTTTCAGATTAAGAGTCCAAAATAATT
AGTGCCCAGTGTTATTAAATGCGATATGCGCACTGAAGCGCAAAGGGCCT
CCTGGCGCATAAGCGCAACGCGCAATGCGAGATGCGCGCTTTTTGAAACA
AAGCGTAAAAAATTATAAAAAAATGCATAACAATTAAATTTAACAAGTAA
TAAGCATATTAGATTGTCATAGAACATGTTGATGATAATCAGGTTCAAAG
TTAGGGTACAAATAGATAATCTAAAATCCTAGTAGTTGATAATTTGACAT
AAACTAAAAATCATCATCATCATCGTCAAGCTCTTCTTGAAGATTTTCGA
AATCTTCATATTCAAGATGCTTACTCCCTTCGGTATATATCATATATTTG
TGTGTTTATATATATATATTATTAGTAAAAAATAAATAATATGTTCATAT
ATATACACATATATAATATATGTCTGTAGTAAATAATCATTATCATAATC
AGTATATATGTATATATATTTCTGTATATGTGTGTGTATGTGTGTGTATA
TGTGTGTAGATATGTGTGTGTATATGTGTATATATATGTGTGCGTGTATA
CAAGAAAGAAGATAATTACCAGAAAGAAGATTATCCTGCACAGATCTTGT
TCAATCTATCGCCTATGTATGTGTATGTACGTGTTGTATGGTATCAAAGA
TGCGTGTCTGTCTATTTTAGGGTTTTATGACCCTTTTCTTTTAAAAAGAC
CCAGTCAACAGCCCAGTCAATGGTCCCGTCAACAGTCTAGTCAAAAAAAT
AAAAAAGCGCGCTTTTCCAGCGCTTTTCGCATCTCGCTTATGCTCTTCAT
GCGCAGAAAAGCGCGCGCATCTCTAACCTCGCATCGCATAATCAGAACAA
TGCGCATTTACCTCGCATCGCATCGCATCTCGCATATGCGAGCGCATGTG
CGCGCTTTTAATAACACTGTTAGTGCCAATAAATTTATACTTGTGAGCCA
ACTTTTGTTTACCTATTCAGTTTAAAGGAAAATTGATGAGTACTATATCA
CATCAACTCTGACTGAGCAGGTTGCAATGATCAATAAGCATAAATGTCTT
TAACTTGTATGGAACTATAGAAGTAATGTGTTCACTAGACATGTCTATTA
TCATAAACATGCCCAGTATGTTTCTAAATTCTACTAGATGATAGCATATA
TTCCTGGGAGCAAAGACCGTAATAGTTGCAGATCTGATACTACATAAGAA
AAGCATTTATAAGATATCTCTATAAAGGTTCTTACAAGTTTTGGATTTTA
TATAGCTTTGTCATACAACTAACTCTGATGCCAGTTCTAATGTTGTTTCT
GAATAAAGTACACACTAGATAAGGATCAAAATCATTGTACTACTGATTAA
AGTTGTTTAAGCGACATCTTACAATGCTTATGTTCCATCTAAATTTGTAT
TAAAAAGTCCTTTAAAAAAAGTGGCGATTCCCTCCATTTGGTCATCTTAA
TGTAGGTGTCATTCTAAATTACTCCCTCCGTCCTAGTTTATATGACTATT
ATTCCTTTTTGGGACGTCCCAAAAAAAATGGACCTATCATACTTACTAAG
TTTTGAACACTACTTTTCACTTTTACACCTACTACTTCTCTATTTTATAT
TTTTCTTTTTTTTAATAAATACTATTACACCTACTGCTTCCTTCCACTAT
CTCAAATCTGTTATTAAATTTTGATAGGTCCCACCATTATATCCACTTTT
ATTATATTGTACTACCTATTTTTTAATCTCCGTGAATGTCAAACAAGCTC
ACATAAAATAGGACGGAGGGAGTATATAATTTGTATTTTTATGAGAACAT
GCAATTTACTATCTGCATATCTATTAAGTTATAGCTAGGAAGATTCGCAT
GTCTTGCTACTACGTAAACCTTTTGTATAATTGAAGGTATAAACCTGGAA
TTTGTATGATAATAACTATATAAAAGGTCCAGATACTTGCACACAAAACC
TCTTAGACAATATAACTGTTTTGGGTACAAAATCCTTTTCAGATGCTCAC
TACAGTCTAGACTTCTCTTACGGGTCAAGTTGGTAAAGGGCATCTGTCAC
TGCTATAATTTATATCCCAATTATTTTTTTACTTTTATTTGGTGCTTCTT
GTACATGGTGTAACTATAGTTGGTTGTTTTTGCAGGATGATATACTGCCA
AAGTTAATGACATCCACTGGCTCCTATGATGATCTTTTCAGAAAGGAGAT
ATCAAAATACGATCAAATATGTCAGGAAATTGGAAAAAATGTTGAGGCAC
AGGAACATTTATTGCTGCAAATTCAGGTTCGCATTTTAAATTTATCAGTT
CCTGATTTGTATCTCTTCAATTGTGTGGCTTTGCAAATAATGTATGTTAA
TTTAGCTGTAATGTCATTAGTTTTCAGGTTGTACTGTCATTGTTTTTTAG
AAGGTTAATAAATCTTGAGATGAATTTGTTTAGGATTTTAGTTCATTGTC
AATCTGTAGTGTTGTTGTGGTGTCACCTTAAATTATTGTCTTTGTTGTGT
TCTAAATTTTTAAGCAATATATTGGAGACGAAGAAGGGGAGGTAGAAAGG
TCTCAATGGCTTCAGTTGATATTGCAATCAAGCTCTAGGTCTTTAAATGT
ATTGTCATGTTAGCTTCCTTAATAAGTAAAAGTTATGCCTTCTTTGACAA
TCTCAAAATTTAGCAACAAACTGCAGTATAGTCAAAACTATAAGAAATGG
GATTAATAGGAATCAGCGAATGCATATAATTATGTAAAAGTATTAAGCAA
CTATTTTCTGCTCGCAATAAGTTCCTCTTTGATTTGATTGCAAGTTCTTT
GTCGTGACAAAGTTATACTTCTTTTTCCTTCTTGATCTTCTCATTACAGG
CTCAAAGCAATGAGTTTGCTGCCGTCTTCAACATTGAAGATTATAAAGGT
AGGCAATATTGGACTTAGATGCTCTGGTTATGGTTCCTTGCTTCTTTATA
AAATTTCCTTCCTTCTGTTTAAAATTGCCTAGGTGAATACTCCTAAACTA
AAACTATTGAAATACCTAATTATCTTTGATCTTTAATTCAAATGCAACTT
ATGGAGCTTCTTAATTATTTTACTAAATTAAATTTCTCGTTGACATTGGC
TACTGCCAAGCTTTTAAACCACCTTGCTTGGGACACTGGGTATGGAGTTA
AGCATCAAGACAAACCTGTCAGTTAGTGTTTCTTTCTTCTAGTTAAGATG
GTACTTCATAAACAGCTCACAGTTTATGCAATCTGAATGAAGCTCTGCAG
GCCAGACCTGGTTCTCTCTCATTAGGTGTTATGGTGGCAACTGGTGCTAA
TATTTTCCGTGATCTATCTTATATTACTTCTCATAGTATTTGAAGTTAAT
ATTACTGTTTATTTAGATTAGAAACAATTTTTGATACACTATGTCAGAAC
AGTTTTATATATCATTTTGTCATAGGAACAAAACTCTCTCGTAATTCTCT
CTAATTGACAAAAACTCCTAAGAGTGATAAACAGTGAATAGTCAACTTAT
TCATATGCTGACTCTAACCATAAGCCGCGTTGAGTGTACAGGTTGTATTA
GCTGATATATGCAGCTATACAATGTGCCAGCTCATCTTGGATTTTATAAT
GATCACTTTTTTTATTTTCTATTTGAAAAAGTTACATACTTACCATGCTA
GTTGTTAATTCAGTTTTAATTAGATAATGTACTATTTGTCTTTCTGATAA
ATTTCTGTTTGTTTTTTTGAATTTAAATATATAACATCTGACGTAATGTA
GCCTTCAACCTACACAAGTGCTTCACCTTTATAACATTTTTTCATTTCTT
TCATCAACAATTTTGCAGCATCTCGTGAGAAGTGCTTTAAGCAGATCGAA
GCTGCTATTGCAAAATATCAGGAAATTAAAGAGAATATCAATGAAGGACT
AAAGTTTTATGTTACTCTTCAGGTATGAACGACACCTTAAAAGACCTTAA
TTACAAGCACATTGCAGTAATTTAGACATTTTTAATTGCATAATTAGATA
CCAAAGATATCATCAGATAATGTTGTTTTTAGCTCATGTGTAATGAAGAG
TAATATGAATTAATAGCATTATAGCAATTGAAAACTATTTTTTGAAACGG
AAGAATTTGGAGAGCAAGGAGTGTGAAGGATGCAGTTACAATGTTCCTAT
AATTGTTATCGTTTCTACTTGATTTTGCTTCGTAATTGCCAAGAATGATT
GCTATTTCTTATGATTGGCTTTTTTGTTTTCTAGTGTTTAGTTTGTGGAA
ACCTTAATGCAGTGTTTGGTTGGAAGTCATGGAATGAAGGGATTTGAATA
CTTTTGAACAAACCATAGATTAAGAAATGTGAGAGGGAGGAATGAAGAAG
TTGAACATGCAAAATTTTCTGTTATGAGATTTAAAAAAGAGAGTAGAAGT
AGAAATAAGGCTTTCATCCTCAAATCTGTGGTTTTGGGTTCTAGAATTGT
AGTAAATTGGTATGTTCAAGGGAATGGAGTGAGGAACAAAAATTGTGAAT
ATATGTTTACAAGATGTTGGCATCTTTATGACATACCCACCTAATATCAT
TCGTTTAAACCAAACAGAACATAAAAATCTTAGGTCTTTATCGGTGGTGC
ATGAGATACTGAGATATCATGTTGTTGGGTTGTGTGATTAATTTTACCTC
ATGAAATTGGAACCTAATTGCTTTATTACAGGATGCCATCACAAATATGA
AACAACAATGCAGTGATTTTGTGATGACAAGAAGCATACAATGCCGTGAA
ATGATTGAAGAAGTTCAAAGACAGATGGCAGGTCTCAGTTTTCAGGACAG
TAAAAATACTGGCAATTACAATTACCCTGCAGTTGGACAGGCGAATCAAC
CTCAAAGAACTTCCTCACAACAAACAAAAGCCGGCAATATTCCGCAACAG
TCTCATCCTCAATCACAGCCTTACTATTCAGCACCTCAGCAGCCTAACAC
CAGTAACATTCCGCAGCAGTCTCATCCTCAGTCACAACCTTACTATTCAC
CCCCTCAGCAGCAACCACCTCAGCAACCTAACGCACCTGGGTATGGTCAG
CCTCCACCCCCTTATGGCTCACAACAGCAGCAACCTCCTTACCATTTGCC
AGCTGCACGTCCCCCATACACATCTCCACAGAACCAGCAACAGCCAGGGG
TACCTCATGAATACGGACAACCTGCTTACCCGGGGTGGCAGGGTCCATAC
TATAATGCTCCCGGCCAGCAACCGGGTTCGATGCCAAGGCCTCCTTATAC
TGTTCCAGCTCCATACCCTCCTCCGAATCAGGGTGGCTACTATAGACAAT
AG
Sequence Length:
13402
Sequence Checksum:
1ee84709ae3a62cd0fe17909ad8c0557
View location in JBrowse:
Cds:
>DCAR_023618cds ATGGCAACGCCGTCGTCGTCATCATCGCCGGCGACACAAATTATGCTGGC AATTTACGAGAAGAAAACAACTGCAGTCGATCTTTACCGTCCACTCCGCA ACTACATCGTCTACAATTACTCCGAACGCGAAGCTCAAAACCTCGAAGAC GATCTCCAAACCCTAAAACAGTACCGCACAGACATCGAGCGCTCATCTCC CTCTGATTCTCTCTCATCTCGCCGAGATCTCCTCATCAACTACTTCCGCG CCCTCACCGCAATCGAATCACGCTTCCCTATCTCTCCCGAGACCGATCAC ATCAACACGCTCACGTTCGTGTGGCACGACGCGTTTAAGAACAAATTGAA GGCGTCGCAGCAGAACATTCACTTGGAGAAGGCGGCGGTGTTGTTTAATT TGGGAGCTGTGCATAGTCAGTTAGGGTTAGGGTTTGATAGAGGGGAAGTT GAGGGGAGGAAGAACGCGTCGCATTCGTTTATGAAGGCGGCTGGGGTTTT CGCATTTTTGAGGGATAATGTGGCGATGAAGGCTTGTATGGGGAATTCGA CTACGCTTGATGTGTCGGTGGAGTGTGTGGGGATGTTGGAGAGGCTTATG CTTGCCCAAGCTCAGGAGTGTGTGTTTGAGAATACGATTGCGAAAGGGAG CAGTGCTAGTGTTTGTTCTAAGATTTCGAGACAGGTTGGGATCTTCTATG AGGAAGCATTGGCTGCATTAAAAGTTGCACCTCTTAGCCAGCATTTTGAA AAAGCTTGGCATTCACATGTCCAGTTAAAGGCAGCTTTGTTTTATGCTGA GGCTTGCTATAGGTATGGTTTGGAGCTTCATGAGAAAGAAGAGATCGGCG AGGAAATTGCCCGGTTGAAGAGTGGGCTCAATGCTTTGTCTGAGGCAAGA AAATCATCTCCAAAGGGGGCTGCTCAGCAGCTAATAGATGCATATACTAT TTTAGAAGGCAATCTAAATCGCAATCTTGAAAGGGCTGTGAAGGAGAATG ACAGAGTCTACCTTATGAGGGTTCCACCAGCTAGTTCTTTACAACCACTA CCTGCATTTCAAATGGTTAAGACCATGCCAATGACTGAGGTGTTTGATGC AAGCAAGGAAAAGATGTTTGCTAGTCTTGTTCCTGACAGCAGTGCAAAAG CTCTTTCCAGGTACACAGAAATGGTTGATGATGTCATCCGAACACAAGCT GAAATTCTACAGCAGGGCAGTGAGCTTACTCGTGTTAGACTTAAGGAAAT GGACTTACCTGAGTCGATTTTGGCATTAGAAGGGCATTCTGCTCTGCCAA CTGCTCTTAAAGAAGATGATAGGTTGAACAGGTTTGCAGCAAATTTAAAG CAAGCTGCAGAGAGTGATACCCGTATTGAGCGATCAGTGAGGGAACATTC ATCTCTCATGTCAATACTTGATCGACATCCAATAGAGTCTGTCCTTCCAA CCTTAGGGAGGCCAATCATGTCTTTAGACGCCAATGAAGATGCAATATTG GGGGCTTTGAAACAGAGCTTGAGGCAATTGGAAACTCTGGGAGCTCAAAG GGCAGGTCTTGAAGACATGCTTAAAGAAATGAAACGAAAGGATGATATAC TGCCAAAGTTAATGACATCCACTGGCTCCTATGATGATCTTTTCAGAAAG GAGATATCAAAATACGATCAAATATGTCAGGAAATTGGAAAAAATGTTGA GGCACAGGAACATTTATTGCTGCAAATTCAGGCTCAAAGCAATGAGTTTG CTGCCGTCTTCAACATTGAAGATTATAAAGCATCTCGTGAGAAGTGCTTT AAGCAGATCGAAGCTGCTATTGCAAAATATCAGGAAATTAAAGAGAATAT CAATGAAGGACTAAAGTTTTATGTTACTCTTCAGGATGCCATCACAAATA TGAAACAACAATGCAGTGATTTTGTGATGACAAGAAGCATACAATGCCGT GAAATGATTGAAGAAGTTCAAAGACAGATGGCAGGTCTCAGTTTTCAGGA CAGTAAAAATACTGGCAATTACAATTACCCTGCAGTTGGACAGGCGAATC AACCTCAAAGAACTTCCTCACAACAAACAAAAGCCGGCAATATTCCGCAA CAGTCTCATCCTCAATCACAGCCTTACTATTCAGCACCTCAGCAGCCTAA CACCAGTAACATTCCGCAGCAGTCTCATCCTCAGTCACAACCTTACTATT CACCCCCTCAGCAGCAACCACCTCAGCAACCTAACGCACCTGGGTATGGT CAGCCTCCACCCCCTTATGGCTCACAACAGCAGCAACCTCCTTACCATTT GCCAGCTGCACGTCCCCCATACACATCTCCACAGAACCAGCAACAGCCAG GGGTACCTCATGAATACGGACAACCTGCTTACCCGGGGTGGCAGGGTCCA TACTATAATGCTCCCGGCCAGCAACCGGGTTCGATGCCAAGGCCTCCTTA TACTGTTCCAGCTCCATACCCTCCTCCGAATCAGGGTGGCTACTATAGAC AATAG
Pep:
>DCAR_023618pep MATPSSSSSPATQIMLAIYEKKTTAVDLYRPLRNYIVYNYSEREAQNLED DLQTLKQYRTDIERSSPSDSLSSRRDLLINYFRALTAIESRFPISPETDH INTLTFVWHDAFKNKLKASQQNIHLEKAAVLFNLGAVHSQLGLGFDRGEV EGRKNASHSFMKAAGVFAFLRDNVAMKACMGNSTTLDVSVECVGMLERLM LAQAQECVFENTIAKGSSASVCSKISRQVGIFYEEALAALKVAPLSQHFE KAWHSHVQLKAALFYAEACYRYGLELHEKEEIGEEIARLKSGLNALSEAR KSSPKGAAQQLIDAYTILEGNLNRNLERAVKENDRVYLMRVPPASSLQPL PAFQMVKTMPMTEVFDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQA EILQQGSELTRVRLKEMDLPESILALEGHSALPTALKEDDRLNRFAANLK QAAESDTRIERSVREHSSLMSILDRHPIESVLPTLGRPIMSLDANEDAIL GALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYDDLFRK EISKYDQICQEIGKNVEAQEHLLLQIQAQSNEFAAVFNIEDYKASREKCF KQIEAAIAKYQEIKENINEGLKFYVTLQDAITNMKQQCSDFVMTRSIQCR EMIEEVQRQMAGLSFQDSKNTGNYNYPAVGQANQPQRTSSQQTKAGNIPQ QSHPQSQPYYSAPQQPNTSNIPQQSHPQSQPYYSPPQQQPPQQPNAPGYG QPPPPYGSQQQQPPYHLPAARPPYTSPQNQQQPGVPHEYGQPAYPGWQGP YYNAPGQQPGSMPRPPYTVPAPYPPPNQGGYYRQ*