Resource Type:
Gene
Organism:
Name:
DCAR_023734
Identifier:
DCAR_023734.gene
Locus Tag:
DCAR_023734
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_023734, is a part of gene, DCAR_023734. |
| The genetic_marker, MK006103 K3547, is located in gene, DCAR_023734. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_023734 | DCAR_023734.mRNA | mRNA | DCARv2_Chr7:4778200..4792202 |
Sequence:
ATGATTTTCCTTCCTGTCCAAACTCACTCACTTTCATTCCCATTTCACTT
TCCTTGTAATTTTCATGACCAGCAACAATGCAACACAAGAATAAGCATCA
CGCTTCCCAACCACACTTTCTCATCCCCACGCTCCTCTCGTTTCCTTCCT
CTTCATCGCCCTGCCACTCGCCATTTTAAGGTACATACAAAAATTAATAT
ACAGTTTTTTCTGCAAGTTATTTATCGCGTGATTCAATAATTTTGAGTCT
GTTTGAGTGTTGATTTACTCAGGTGATGGCAAATGCGAGGAAAGAAAACA
AGGTTTTGGAAGCTGGTGAAGTTGAATTACTTATGGCCACTTGCATAACT
CGCACTCTTTCACCTGCATTGACGCTTGAGCATGGTCTCGATCAAATCGA
CAACGCTATTCGCCATTTGAAGTCCAATCCTCCTTTTACTACGATTGGAA
TGTACAGGTTTGAGGTAAATCGGGTATATCATGTGCTTTTGGATTACTAA
TTTTAAAATGTATGGTTTAGGGAGAAATTGAATTCATAGAGATTGTATGC
GTGTTTTTAATGAATAAGGCGTTGCTTGTTTATCTAAATTTCATTTGAAA
TTGTAGGTTCTGGTGTCTCCCAGTACAAGAGCTTTGAATTGGTTTTCTTC
TCAACCTGAATCATCTACGATATATCCTCAATTTTTTATGTCCAATGAGA
TTGAAAACTCCACAAGTGTGTCATTTCGTTTGGATACAATCCGAGGGGTT
TTTGGAATAGGCACAGCGGTTTCCTTTAAGGGATCTTATTCTTCTGCCTC
AGCTCATTGTGCCTCTTTTAAAAGGTTAGTTCTTTTCTACAAAAATTTAA
ATTGTGGTAGGTGTTCGGAGAGTCTAGTGGAAAGTTTTCTAGTGAGTAAT
AGCTTAATTATGTCTAGTGTATTTACTTTAAATGTGTTTTTTCACACATT
TTGTGAGGTTTTTAGTGATTGTCTGTCCACCCAAACAAAATATACTTGGT
GTATCCTACTTGAAATAGGATCCAGGGATAATTCCTCTTCTGAATTAAGG
AGTAGAGGAACTGTTTCTGATTCTGAGACACGTAAAGAAAATCTTGGAAA
GTTACAAAATATTGTCAATGAATAAAAATATATGAAGTTACTGGAAAGTC
TAAAAAGTCATGAAGTTAGTGTGAATGTAAGTGTGTGCTCCATAATTTCA
TGAAACTATGTTTATGAGTGCAGTTGAAAGAAGTGCTAGCACAAATAAAA
AAGATATAGCTAGGTACACTTCCATGTTTTCAAGTACTCTTTAACTGATG
CTCTAGAGTCAAGAATCCCTTTATTAGGTTACGCATTTGGTTCACTTTGC
ATGAAGGATAAGGTATTTAATAACTGTTTTCTCATATGTAACATCAAAAA
TATATATTATACATCGGTAAAGACTTTATACTTGTCAAGGACCTCTGGGC
AGAAAACTCATCCTCCTGGGTATCATCGTTCCGACTATATGGATGGGAAG
ATCATACAAAATTATGTGTATATACAATAGCATTCAAAAGTTCATCTAAC
ATAACATGAACATAGTAAATCTGAGTTATTTTATGATATATGTGTAACGG
ATTAGAATTATTATGTTATTATGATTTTAAATTGCCTTTATACATTGTAA
AAATGTGTGTATCCATCTATTTTTTGTTTGATATTTTAATCTCATTGGTT
GGATGGGTGAAAAAAATTGTTGAAAATGTGAATTTTAAGATTTTAGGATA
GATTTTTTATTTAAGTAGATGCCGTGCCCCATGCATCCTCCTGAATTTTC
GCACTAAGCACCTGCACCTGCACCCCACACCCATATCCTAGTTTCTCAGT
GGCTCCCTATTGTGTCTGTATGCATTGTAAAAACTGCAAATGGAACATAC
ACGAGAGATGGTGGCATTGGAATTGTGCTTGGTCAAGTTATTCTCGGTAA
CTTTTATCACAAATGTCAATAACGCCATTGATGCAGTAAGGAAATGAAGC
TCTAAAAGATAAGATTGTATAAAGTTGCAGTAAACAAGCTTGAAGAAAAT
GACTACATCATGATCCTACTTATAAGTCCTAAGCTACTCTCTAGGATATT
CTGGATCCTTCTGAATAATAGCTACATATAGAGTTTGTATGTACAGAGAG
GCAGTATGGAGATGGAGCCGACTGTGACAGTTGTACAGCTAAGCTGTAAC
TGACTTTGGCGCTATTTCTACTTGCTTTGTTCCTGTGTTCTGCTGTGCAC
TCTTGTGTTCTGTGGTGCACTCCTGTGCATCACCTCGTTATACATCTAAC
AACTTTGTCTTGGGTTTTTTTAATGATGCTTCCTGCATGACTATGTATAC
GGTACACTTTAAAAATTAGCTGAAGAATGTTTATGTGGTGTTTCTGTAGT
TATTTTTCAGATTATTCAACACTCGTTGCGGCTTATGGGTATATGGATCT
GAGGTCTGATCCTGGGTTCTATGGGACAGGTTTATCATATTTTTTCGTTC
CTCAGGTAAGCATACCTTTCGTGATGCTATCTTGCAATTGCATCTCTACC
ACTTCTTCTCTATGATTTATTTAATGACCTAAGGTTTTGCTGAGTTTATA
TTATATGCCTTATTCTGACAGCTTGAATTAATTGAGCTCGATGGGATTTC
TATTTTATCTATGACACTTGCGTGGAATGATTCTTCCCTTTGTAAGTTCA
AGGAGGCTGTTGAAGCTAATGAGTTATCACTGTACCAGGTATCCTGAGGT
TGTCATCTTCTCCTGTTGATGTTTTTCTTTCAGTTCTACCCTTCTACTAT
CTACATAATAATGTATGATGTGGACTCGGGAACTTAAGCTCTCTGGTCTG
GATTTAAACAAGAATGGACAGATCTGTTCGACTTGTGTGGCATATCTATG
ATTTAACAATATCTACATCCAATTTATATTTTAAATAACCAAAATTTTAA
CTTTCTTCATAGTTGTGTATTATACAATTAATACGTTTCTTCAATTTAGG
CCAGAGATTATTTATGGCCCAGAACAGGGGAAAGCGACAAGAAATTTATC
AACTCGACTCTTACAAGACCTGAAGTGCTTACAAATGACAATGCTCAGAT
GGTGAATTGCATGGCTTATTATATGTACAGTAATAACTGTCAGGAAAAAT
GCACTCATATTTCTAACTGTTTTTCTTACTGTCTGCCATTCTTGTTTTAT
TTTGCATGATACTATATGTTGCCATTGTGCTGCAATTTTACTTTTGCATT
CTAGCATGGTGACTTTGCGATTTATATGATAGTTTATAAAGATTTTTTTT
TGTGACTAATTGTCAATTTGCTACTTCCTGACTCCTGTAAATTGAGCGTG
CCATTTATAAACCATGGGAAGACTCTCCTGGACATAGATTAAGTTTATCA
GACAGACTGTTGATCACCATTATGTTTATTAAATTTTAAATATATTCTCC
AGGTTTGAAGCTTATAACTTTCTATTGACATTATAAATGTGCCAGTTATA
TAATCATATTGAAAAAAGGAACTATACATGTATAAGATTCCTTGGCTTGA
AATGTAGTAATTTATGAAGTTAACTTAGATTGAACTTGTGCTATAAACAA
TTTAATTGTGCCAAATCTTATTACCGACTGTTTAGCTGTAGTCTTTGTTC
TTTTGATATTTTCTATGTTTATTATGTGCAATCCTGCATTCCCATATCCT
ATGGTTAATCCTTCTAACACTACATTTGAGGTCTCGGATCCAACTGCTTC
GAGCTAATCAATGTATCCAACTTTTTCAGGTTTACTAATTTAAAGCAACT
TGAATTTATAGGTGGCCCTGAATGCTTTGTCTGTGTCTGAAAGGGATCTT
ATGCATGATCCCACCGAAATGGTATTCCCTTTATCCTGGTAATTTTCTAC
CTTTTGAAGATCTTAAGAAAGTGCATGCACGAAGGTGCCACTTGGTTTAT
TTTATTCATTATTTTCTGATGGTCATTAATCGAATAATACAAGTTCCATG
ACCCTCTCTGTTTGCAGAAAAATGGTGCCCACTCTCATCAATTCACTGTT
CGATTTTCTCCTACTATTACTATTTCTTGCAACATGGTAAGGCACAATTG
TTTCTTTATATTAATAAATGTACAATATGTACTCTCTTTTTTATGCGCTT
TACATATTGACGGCCTTATGCTGCAAAAGATCAGAGTTCATGCAGATAGG
TCAAGATACTTTGTGTTTCTCGTTGTATGTTATATCTTAATGTAGTAATG
TCTTAGCATAGCAACGAGAGCCTCCATTGAGGGGAGAGATAAGTGAATAT
CATTAGAACTAACCCATACGCCTGCTCAATTTTAAAATAAATTGTGACTG
TATTTCATATTAATTTCATACTCAGTGATAACAACAACTTCACTGCTTGA
AACATAGGTAATTTTGTAAGAGCAAACTAGATCGTGAGAGGCAATTATTA
AGGCACCCTAATAACCACCAACTGAGTATAAGTGAAATGCTTGAGGGCAT
GAGTTTGTGTGCTACTCCACTGATTTTCAATTGTTTTCAACTTGGATGCT
TTTACCTGGTACAGGAACAGACAATTTTGTTTTACTACTCCCCTGAAAAC
CTTTTGAATTTTAAAACCATTACTAAAATGATATTCTGTAATTAATGCTC
AATATGGTATTCATTTTCAGTATCCATCAAATTATGTTGCTAAAACGAGT
AATGCTTTCCAAGACTATGCGAACATCAATACCTTGTGGGCGTCCCTTAT
TATTGAAGAATGTTCACGACTTGGTTTAACGGTGAGGTTACATGATGGAA
TAAAATGCCAGTCTTAAGAGTACACTTGTCTAATTTTTTCCTGTTGTAGT
ACTTTTGCGTAGCTCCTGGATCACGATCATCTCCGCTGGCCCTTGCTGCT
TCTGCTCACCCGCTTACAAATTGTACTGTATGCTATGATGAGAGATCACT
TGCATTTCACGCTATTGGTTATTCAAAAGGTTCTCATATACCAGCAGTAG
TAATTACATCATCAGGAACGGCAGTTTCTAATCTTCTTCCTGCTGTGAGT
TCTATAGCTATTATGGAGTATTTTGTCTTATTTGTACGGTTACATATTTT
TCTCCTAATTTCTTCTGTCAAATATCTGATCTTGCTTGTGAGGAAGTTTG
AGCTCAACATATGAAAATGTGCAGGTTGTGGAGGCGAGTCAAGATTATGT
GCCACTTCTATTACTCACAGCTGATCGTCCTCCAGAGCTTCAAGATGCTG
GGGCAAATCAATCAATTAATCAGGTACTTGATATGACTGATTAATAGTTC
CCTTTCTTTTTTGTAATGTCCACTGTATCTTGGAATATAAAGATGCTGAA
TTTGTGAAAAATTTCTTGCCAACAGAAACCCTTTCTGGATTGGTTTCTTT
CTATGCCTATAATTTATGTAGATATATAAGAGTTAAGACCTCGCGCAACC
TCCTCATACTTGAATTACCTCAAGATCAGTTTGTTTCTCATCTAATGGAG
ATACAATGTCAATCATGTATGTGAGCGAGAACTTAGTATATTTTCTCTAA
TATCTTACAAATTCTTTTGTAAAAATGTTGGCATAGGACTACAAATTGTT
CTCTAGCATCATGGTTCCCTACTTGAGAACTTGGGACTAATAAGTGTTGG
AACGATTCTGGTGTCTTCCTACACTATAAGTGAATAAGCATAAAACGTCT
GCATTTTTTTTTTTTGAATTTTGTTGTGCTGGAGGTTCTAATTGACCGAG
TAACTGACACAGTCCAAAAAATCAAGCTACAAGAGGTTTCTGTCATATAG
AGTGCTCTTTTGCATTTTTAATTCCTTAAATGTAACAATGCTTACAAGGG
AAGGAGCCCTAATGGTGGACCATTCACTTATCTAAGTGTAAGGTCAAGTG
TCTAAAACTTGTACGTGGTGTGTGATTAATAATCTATGTTAAGTATTACA
AAATTACAGTACTTTCACAATATGTTTGTTCTATATCTGTCTCTGTTACA
AAGATTTATCTATATATTTATACTAGTAAAACCTGCTAAAGCAGAAACAA
TCTTCATCTGTGCATTAAATGATGATTTCCTTCAATACAATTTTTTATTT
TTCTTCACATGCTAGGTTAACCATTTTGCTCCGTTTGTGAGGCACTTCTA
TGGTCTTCCAGTACCTACAGATATTATACCTGCAAGGATGGTACTTACTT
CAGTTGACTCGGCAGTATATTGGGCAACTTCTTCGCCTTGTGGTCCAGTT
CATATAAATTGTCCTTTTAGGGAACCACTGGACAGTAGTCCAAAAAATTG
GATGCTGAGTTGTTTGAAAGGATTGAATTCTTGGATGATGAGTGCTGACC
CATTTACTAACTACGTAAATATACAACATACGTTTCCATCGAATGAGGCA
CATGGCTCTCTGAGAGAAATTGTAAATATTATGAAAGGAGCCAAAAGAGG
TGTTTTGGTACTAGGCGCCATCTCTTCAGAGGATGACATATGGGCTGCAC
TTCTTCTGGCCAAACACCTTCTTTGGCCCGTTGTAGCTGATATCTTGTCA
GGTTTACGAATGAGGATGTATACGAGTTCATTTTCTGAAATACGAGGGAA
TTTTGTTTTTGTTGATCATCTTGATCATACCCTACTATCAGATGCAGTCC
GGGATTGGGCACAGGCTGATGTTTTTGTTCAGGTATATAATACTTTGGAT
GTGGCGATGTTTATATAAAGTTTAGATTTAAAAAGGTTCGTTAAAAGACA
TATTGTTACCCCTCCAGTGAAACTGAGCTGGCTATATAGAATTTTTGTGC
AGGAAGCACAGGACATTTTTAGTTTCTGTTTACTTATTTGCTTTAATTTG
TAACCAGCAAACTGTTCATACTACAAATCTACAATAGAAAGACTTTTAAA
GTTATATATTTTTAAACGTCTAGATTTGCGACTTGTGGGGTATGCAAATT
AATATGCTCTTACTAACATATTGCTCTCCTTATATTCTGAGTCAATATTA
TTAGTTGGTTACTGTTAGTCCATCATCCTGTGCAACAATACACACTCACA
CATATCTATACCAGATTGGAAGCAGGATTACGAGCAAGCGCATTTCACAA
ATGCTAGAAGATTGCTTCCCATGCTCATATATACTAGTTGACAAGCATCC
AAATCGTCATGATCCTTCACACATTGTAACACATAGGATCCAATGTACTG
CTGCTCAGTTTGCTGATCATGTGCTTAAAGCTTCAATAAATGGGATCAGC
AGTAACTGGACTAGTTTTCTCTGTGCATTAGACACAATGGTATGTGTTTT
CTAAAATTAATTGATTTTTTAATTCAATTACCGTGATTGAATTTTTTCAC
CTTTCAAAATATTCAATAGTTTATGAATTGGGTCAGTTTAGCCTGATAAA
TCTGTTAGGATTGGTGTGTAGTAAGGAATATAATAGTTGTATGTCACATT
GGTGGACATTCAATTTGAAACCACATGTGAAATTTAAATTGATTTTGTTT
GTTTTCTCGTCTCCTCCACAGCCTAAGTATGTAAGTGCTGTAGTGAACTG
GTTTTGAAGCACTTTTAAGATGGCATCCAAAATATAGGTTCACTCGCCTT
CTTATTCATGATTGTGGTCATTGGTAGATTTAAATGTTCAAACTAAGTGA
TAGAGCTATCACACTTTACTGAGTATAAGATTTATTGGTGGTAATGTCAA
AAACATACGTACATGCATATCTTCATATATAATTATCAAGTCAAATGTAG
GTTAATATAGTCGATACCTCTATCCCTTAAGTCAGTACAGCTAGTTTATT
GTCTATCCTTGCAACACTATGTGACAATCTGTTTACTGTTTACCTGATAT
TACTTTGAGTAGGCTAGTAGGTGTGTTTAACTGATTCAACAAGAGTTTTT
TCAAAATACACTTAATATGTAGTCTATCAATTATATCGTAAAGTAAAACC
AAAAAATGATTTGGGTGCTCCTTACTTGGCTGTTTCAGGTTCTACCCAAT
GTTTTTTTACATTGATTCTAGTTAATCTTTTTTCTTGTTCCATAGGTTTC
TCGGGAAATTTCATTTTTAATTCATCAGGAGCAGTCATTGACGGAACCCT
ATATTGCACATGTTATTCTTGAAGCTCTTAACTGTGGATCAGCAGTGTTT
GTTGGAAACAGCATGCCTATACGTGACGCGGACATGTATGGATCTAACTG
GACAAATTGCACACATAGTAATGACATTCTATTAAGCTCAGGATTGCCGT
GTCATGGGATACGAGTGTCTGGAAATAGGGGAGCTAGTGGTATTGATGGT
TTGCTTAGCACTGCTGTTGGATTTGCTGTGGGATGTAAAAAAAGAGTGAG
TACTTCCAATTTGCTTAAAAGATTTGGTCACTTGTCTCAAGTTGATTGAT
GTATAAATAGTCACATGGCAGTACCTTGCTTCTTATTTCTAAATTTATTA
AGGTGCTTTGTGTGATTGGAGATGTTTCTTTTCTGCATGATACAAATGGA
TTAGCACTACTGAAACAAAGGTAATATATTGTTCCTTTAACCAGTAGCTA
CATATTTGAAGAGATCAATGTTTTACATTTTTACCTGGTTTTAATTTTTG
CATTTTAATTCTATTTGAGGAAACTATTAACTTTGACCTCCTGGTAAAAA
TTTATGGGGGTGAGCAGAAGCAGCAAAGCCCAGGAGGTTACTGTTGCATA
AGTTGGCTGCATATCCTCGTATCGTAGTTCTGACATTATACTGAATTGTC
ATTATGACTCATTTATCTTATTTCCAATGTCATAGGATACCCCGGAAACC
AATCACAATACTGGTGATAAACAACCATGGTGGTGCAATTTTCAGCTTCC
TTCCTGTTGCGGCAACAACAGAGAAGAGAGTACTAGAGCAGTTTTTCTAC
ACTTCTCATGATGTGTCAATTCAGAACTTGTGCTTGGCACATGGGTTAGA
ACTAATAAGCCTTGTTCACAGTTGTTATTTTTTTATATGCTTTTCTTTTC
AGCTCAATAATTGTTAGTGATGATCTGACAACTTTGCTCCTTGAAAAAGT
CTTCTCGTCATAATTCAAGACTGATTGATCTTTAAGCACAATCATGACTG
CAGGCTCACACTGACAAGATGTCACTGAACCTTTATGAATTACTATCTGA
CATCGGATTATGACAAGCAAACACCTGAAACGTTTTCTTGATTTCAGAAG
ATAAAATTACTGATTTTGATCCTTTACGAAAATTCGAAGTATGAATAGCC
CCATATATACATATATAAAATATTTCTTTTGCATGACCTTATGGAATTTC
GGAATCATATTCCATTCCCCCTTAATTTCTCCAGCTAGTATTAAAAATAT
CCTAATGGCAGTTTGATTATTTTTAGGTGTTCTATAATTGTATTTGTTAT
TGTGGAAGCTGCTATAGGTGAAGATGTCATATATTAAATTTAAAATTATC
CCCGGAGAAAATCTACACAAGCTAGATGATAATAATTTGGTTCTTATTAA
CACAAATCTCTTTGTGCAGCATAAAACACGTGCATGTTAACAGAAAAGTG
GATCTGCAAGATGCTTTAATTAGTGCTCAACACGAAGCCCTTGATAGTGT
AATAGAAGTTGAAAGTTGTATAGAAGGAAACACATCCTTTCACAGGTAGT
CTGCATCTTCTTGCTTCAGTGTTGAAATTATACATTTCATAAACATGCTA
TTCTAACGCGACTTTATCTGCATCTCAGCTGTTTGAAAAAATTTGCAAGT
CATGCAGCAGATCACTCTTTCAATGTCCTAACAAAACTTTCACTCTCCAA
TTCAGCCTTAAGAGGATCTACCTATTGTACAATTCAGAAGTTGGAGTATT
CCTTGTATAGGTGTGTGTAAATTGATTAGCATTATATCCTATATATTATT
AGAGCAAGGGACTTCAGGTGGTTGGTCGTCTGTCTTCACCTGTTCCCACA
AAGCTAAAAAGAAGGATTGAAGTACTAATATAGACTCCATAAAGAAAAAC
TAAATAGAAAATATTTTATAACAGTATTTTTATATTGTTATAATATATTG
CGCTCAAGAGAGAACCAATTCTTAAAATGGAACCTTACAACCACTAAGGT
TCTGCTGCAGAACCCTAAATTCTAAAAAGATTTTCAGGATCTAATTCTAA
ATACATGTTTTTTGCATCGTTGTTTATGTTCAAAAATAATTTTACATGTT
TTTTGCATCGTGTGTGTTCAAAAATATTTTCAAAATATAATACATAAACA
CGACATTTTTTGCATGTGCAGTTCTGCTGGAGAATCCTAACTAATACTAG
AAATAAGGTTAAGGGTTCTAAAGGTTCTTAGGCTAAGGGTTCTAAGAGGA
ACATGACCTATTTAAGTAACAAAGTAACAAAAACTTAAAATGTAAATGAC
TAAATATGTTATTAAACTACTAAAAGTACATATATTTATACACTAGTTTA
CTGTAATAACTGAAAGTTAGCATTTTTTAACTTAACCTAAAATGCTAACA
AATTCTTTTACATTACTATGGCAGAATTAGGCTATGTGCTCCACCTACTT
CAGCTCGTGTTACTCGTGACAGTACTACATTTTACAGAGAAGGATTTGTT
TTAGCTTTGTTTCTTAAAGATGGAAATGCTGGTTTTGGCGAGGCAAGCTT
GTGTTTTAGTTTCTCGATATGTTAGCATATTGAAACACAAAATAATTATT
TTATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCT
TCTTTGAATTTAGTTTTTTTATCAGGTTGCACCTCTTGAAATTCACAAAG
AAAATCTGCTAGATGTGGAAGAGCAACTTCGATTTCTTATGCATGTCATC
AAAGGAGTTAATATTGAATTTATGCTTCCCCTTTTAAATGGCTCGTTTTC
TTCTTGGATATGGAACAACTTAGGGATTCCGGTAGGCGTCTTGGCTAATG
TCTCTAATTTTTGAATATCTGCAATGCAACTTTTATTCCTCAATATTTTG
CTTATCATTGTACTGAAGTTTCCGATGCCTTCCTTCCCTTGATATATAGC
CAGGTTATATTTTTCCAAGTGTTCGATGTGGTCTGGAGATGGCAATACTC
AATGCCATTGCAGCTACAGAAGGTTCTAGTTTGTTAAATATACTCCAGCC
ACTGACAGAGAGTGAAAAACAAACGTCTGCAGTACCACCAAATGTGAGAA
TATGTGCTCTTCTTGATGTGAAAGGAACTCCCTCGGAGGTGGCTTATGTT
GCTGGCACACTTGTCAAAGAAGGATTTACTGCAATAAAGCTAAAAGTGAG
CATTGTTTGAGAATACAGTCGCTCAAAAATTCGTCTATGATAAATTTATG
ATCCTCTTTCTAGCAGCTTGTTTCCTACCATATTATTAGGCCACAAATGC
TGAAGAACTAAATTTGGGTTTATCCACAGGTTGCACGGAGAGCAGACCCT
ACTGAAGATGCTGATGTCATAAAGGAAGTAAGAAAGATAGTTGGAAGCCA
AATTCAACTGCGTGCTGATGCAAATCGAAAGTGGATCTACGAAGATGCAA
TACGTTTTGGTTCTTCTGTTAAGGACTGTGACCTGCAATATATAGAGGTC
ATCTAGAGCTTTTTTTTACCCTAATCTTTGGTCTACCTCCTATCCATAAA
TTTTTAATCATCATCACCTGATGTGTTCATTAGTGACATCATATATGCTT
CGTGCGATCGAAGTAATGAATAAGTAGTAATATATTACCATATGATCTAT
TATTTCTGAGTTGTAGACTATGCTCATTTATTTTAAAAATGCTAACATTC
CACCATGTTCAGGAGCCTGTTAGGGATGGAGATGATATAGTTAGATTTTG
TGAAGAGACTGGTTTACCTGTAGCACTTGACGAAACCATCGATAACATTC
AGGGAAATCCTCTCAAAACTCTTGAGAAGTTCAGTCATGCTGGAATAGTT
GCCATTGTAAGTAAGCATATATTTCAATTTTCTTTCGAGTCTACAGGTTA
TAGGTTTATCTAATTAAGGTGAAAGTAGATTACTAGATATATGAATTTTT
AAAAAAAAAATGGTGTTTAGAAAGTTTTATAACTCAACGACTATTAACGT
ATCTCATGTCCAAACGTGGTTGCACAATTTTACTGGGGTTGTTTGAAGAT
CTTTCGCAGGTTCCTAAGTTTGCTTATGATTATTATGTTTCTAGGTTATC
AAACCAAGTGTTGTCGGAGGATTTGAAAATGCAGCATTGATTGCAAGATG
GGCTCAGCAGCAGGGGAAGATGGCTGTTGTCAGTGCTGCATTTGAAAGTG
GCCTTGGTTTGTCAGCCTATATACAATTTTCTTGCTATCTCGATTTGAAA
AGTGCAGAAATATATAGACTGATGAATAAGGAAGCACCAGTACCTGTAGC
ACATGGTCTTGGAACTTATCGTTGGTTAACACAAGATGTGATTACAGAGC
CTTTAAGTATAACTCGTAATCCTTTTAATGGCTTCATGGAAGCCTCTTCT
GCAGATGCTGGCCGACTCTTGCGAAATATTCGACTTGATCAGAATTATAT
CGTCAGTAGGAACTCTGAGGAGAAAGTTCGTCCTTACCAGTTACAAGTTC
ACTCAAAGGGTTTCTCCATGTCCATTAATGTGCATGAGATTGGAAAAGAT
ACTAATGTAAGAATTTAACAAATTTTGTTAGTAATATAATATTCCTTTTT
CTGTTTTGATTAGTTATCCAGCTGTCCACCTCATGTTATGGAGAAGCAGT
CTTCCCTAAATACTTAAAAAATGTGTTACTTTATTGTTACTATTTTCATG
TTTATGTCCCAATTTATAGTTTGTAGTCGAAATGCACTCCTAAAATATAT
ACAAATTATCTACATTCTTACTTCCCTGATTTTCTTAAGCAGGAAAATGT
CGTCGTGTTTCTTCATGGCTTCCTCGGAACTAGTGAGGAATGGATTCCTG
TCATGGAGGCCATCTCAGGATTTTCAAGATGCATTGCGTTTGACCTACCT
GGACATGGAAAATCAAAGATTGAAGTTGACACTGTTACTGAACCTGCAAA
AGAACATATTTTCTCAATTGAGGCAGTGTCAGATATTATTTGCGAGTTGC
TTTCTTCTATCAACGCACCCAAAGTAACTTTAGTTGGTTACTCAATGGGG
GCAAGGGTTGCTCTATACATGGCCCTAAGATGCGTTGATATGGTAAATAA
ACTTGATGGATCTTGACTTTATCTAAACAGAATAAACCGAGGAGTGAAGT
AATGTTGAATCTACCTCTTTGTTTATGTTAGGTTGAAGGAGCTGTTGTAA
TATCTGGAAGCCCTGGGTTGAAAGATGAGCCTGCTAGAAATATTCGTAGG
ATGAAAGATGATTCCAGGGCTTGTTCGCTTACTTCATATGGTTTAAAATG
CTTTCTAGACACTTGGTATGCAGGAGACCTGTGGAATAGGTATTGTCGGG
ATTCTCCTTATTGTTTTTCTTTCGCATTCTTCATATCTGAATCACATGTC
TAATTTCCTTAGTACTTTGTTGCATTTTGCAGCTTAAGATGCCATCCGAA
TTTTAAGGCGATAGTCACCAGTCGCATGAGACACAATGATGTTCATGGTC
TTGCAAAAGTGCTTTCTGATTTAAGTGTTGGAAGACAACCGTAAGTTTAT
ATAACCTTTTCCTAAATAAACATTTCCCACTAAGAGCATTTTTCAAGTTA
TTATTTCACAGAATGCAACTTAATTATTCTATCGTTTTTACATATGGCAT
GCCAGACCTTTGTGGGAAGACCTGAAACACTGCAAATCACCACTTCTGTT
GATTGTGGGTGAAAAAGATGATAAATTTAAGCGACTTGCTCAAGAGATGT
GTTCTACAATCAGTCAAGAATCTAGGGGCAACAGGAAGTCCACAACTTGT
GAAACAGTAGAAATCCCGGGTTGCGGGCATGCTGTCCATTTAGAAAATCC
TCTTCCAGTTGTTAAAGCAATTAGAAGCTTTCTAACGAATAAAAGAGTCT
GA
Sequence Length:
14002
Sequence Checksum:
1f78f3a98863dcf7f8d2a0addd9843fe
View location in JBrowse:
Cds:
>DCAR_023734cds ATGATTTTCCTTCCTGTCCAAACTCACTCACTTTCATTCCCATTTCACTT TCCTTGTAATTTTCATGACCAGCAACAATGCAACACAAGAATAAGCATCA CGCTTCCCAACCACACTTTCTCATCCCCACGCTCCTCTCGTTTCCTTCCT CTTCATCGCCCTGCCACTCGCCATTTTAAGGTGATGGCAAATGCGAGGAA AGAAAACAAGGTTTTGGAAGCTGGTGAAGTTGAATTACTTATGGCCACTT GCATAACTCGCACTCTTTCACCTGCATTGACGCTTGAGCATGGTCTCGAT CAAATCGACAACGCTATTCGCCATTTGAAGTCCAATCCTCCTTTTACTAC GATTGGAATGTACAGGTTTGAGGTTCTGGTGTCTCCCAGTACAAGAGCTT TGAATTGGTTTTCTTCTCAACCTGAATCATCTACGATATATCCTCAATTT TTTATGTCCAATGAGATTGAAAACTCCACAAGTGTGTCATTTCGTTTGGA TACAATCCGAGGGGTTTTTGGAATAGGCACAGCGGTTTCCTTTAAGGGAT CTTATTCTTCTGCCTCAGCTCATTGTGCCTCTTTTAAAAGTTATTTTTCA GATTATTCAACACTCGTTGCGGCTTATGGGTATATGGATCTGAGGTCTGA TCCTGGGTTCTATGGGACAGGTTTATCATATTTTTTCGTTCCTCAGCTTG AATTAATTGAGCTCGATGGGATTTCTATTTTATCTATGACACTTGCGTGG AATGATTCTTCCCTTTGTAAGTTCAAGGAGGCTGTTGAAGCTAATGAGTT ATCACTGTACCAGGCCAGAGATTATTTATGGCCCAGAACAGGGGAAAGCG ACAAGAAATTTATCAACTCGACTCTTACAAGACCTGAAGTGCTTACAAAT GACAATGCTCAGATGGTGGCCCTGAATGCTTTGTCTGTGTCTGAAAGGGA TCTTATGCATGATCCCACCGAAATGAAAAATGGTGCCCACTCTCATCAAT TCACTGTTCGATTTTCTCCTACTATTACTATTTCTTGCAACATGTATCCA TCAAATTATGTTGCTAAAACGAGTAATGCTTTCCAAGACTATGCGAACAT CAATACCTTGTGGGCGTCCCTTATTATTGAAGAATGTTCACGACTTGGTT TAACGTACTTTTGCGTAGCTCCTGGATCACGATCATCTCCGCTGGCCCTT GCTGCTTCTGCTCACCCGCTTACAAATTGTACTGTATGCTATGATGAGAG ATCACTTGCATTTCACGCTATTGGTTATTCAAAAGGTTCTCATATACCAG CAGTAGTAATTACATCATCAGGAACGGCAGTTTCTAATCTTCTTCCTGCT GTTGTGGAGGCGAGTCAAGATTATGTGCCACTTCTATTACTCACAGCTGA TCGTCCTCCAGAGCTTCAAGATGCTGGGGCAAATCAATCAATTAATCAGG TTAACCATTTTGCTCCGTTTGTGAGGCACTTCTATGGTCTTCCAGTACCT ACAGATATTATACCTGCAAGGATGGTACTTACTTCAGTTGACTCGGCAGT ATATTGGGCAACTTCTTCGCCTTGTGGTCCAGTTCATATAAATTGTCCTT TTAGGGAACCACTGGACAGTAGTCCAAAAAATTGGATGCTGAGTTGTTTG AAAGGATTGAATTCTTGGATGATGAGTGCTGACCCATTTACTAACTACGT AAATATACAACATACGTTTCCATCGAATGAGGCACATGGCTCTCTGAGAG AAATTGTAAATATTATGAAAGGAGCCAAAAGAGGTGTTTTGGTACTAGGC GCCATCTCTTCAGAGGATGACATATGGGCTGCACTTCTTCTGGCCAAACA CCTTCTTTGGCCCGTTGTAGCTGATATCTTGTCAGGTTTACGAATGAGGA TGTATACGAGTTCATTTTCTGAAATACGAGGGAATTTTGTTTTTGTTGAT CATCTTGATCATACCCTACTATCAGATGCAGTCCGGGATTGGGCACAGGC TGATGTTTTTGTTCAGATTGGAAGCAGGATTACGAGCAAGCGCATTTCAC AAATGCTAGAAGATTGCTTCCCATGCTCATATATACTAGTTGACAAGCAT CCAAATCGTCATGATCCTTCACACATTGTAACACATAGGATCCAATGTAC TGCTGCTCAGTTTGCTGATCATGTGCTTAAAGCTTCAATAAATGGGATCA GCAGTAACTGGACTAGTTTTCTCTGTGCATTAGACACAATGGTTTCTCGG GAAATTTCATTTTTAATTCATCAGGAGCAGTCATTGACGGAACCCTATAT TGCACATGTTATTCTTGAAGCTCTTAACTGTGGATCAGCAGTGTTTGTTG GAAACAGCATGCCTATACGTGACGCGGACATGTATGGATCTAACTGGACA AATTGCACACATAGTAATGACATTCTATTAAGCTCAGGATTGCCGTGTCA TGGGATACGAGTGTCTGGAAATAGGGGAGCTAGTGGTATTGATGGTTTGC TTAGCACTGCTGTTGGATTTGCTGTGGGATGTAAAAAAAGAGTGCTTTGT GTGATTGGAGATGTTTCTTTTCTGCATGATACAAATGGATTAGCACTACT GAAACAAAGGATACCCCGGAAACCAATCACAATACTGGTGATAAACAACC ATGGTGGTGCAATTTTCAGCTTCCTTCCTGTTGCGGCAACAACAGAGAAG AGAGTACTAGAGCAGTTTTTCTACACTTCTCATGATGTGTCAATTCAGAA CTTGTGCTTGGCACATGGCATAAAACACGTGCATGTTAACAGAAAAGTGG ATCTGCAAGATGCTTTAATTAGTGCTCAACACGAAGCCCTTGATAGTGTA ATAGAAGTTGAAAGTTGTATAGAAGGAAACACATCCTTTCACAGCTGTTT GAAAAAATTTGCAAGTCATGCAGCAGATCACTCTTTCAATGTCCTAACAA AACTTTCACTCTCCAATTCAGCCTTAAGAGGATCTACCTATTGTACAATT CAGAAGTTGGAGTATTCCTTGTATAGAATTAGGCTATGTGCTCCACCTAC TTCAGCTCGTGTTACTCGTGACAGTACTACATTTTACAGAGAAGGATTTG TTTTAGCTTTGTTTCTTAAAGATGGAAATGCTGGTTATATTTTTCCAAGT GTTCGATGTGGTCTGGAGATGGCAATACTCAATGCCATTGCAGCTACAGA AGGTTCTAGTTTGTTAAATATACTCCAGCCACTGACAGAGAGTGAAAAAC AAACGTCTGCAGTACCACCAAATGTGAGAATATGTGCTCTTCTTGATGTG AAAGGAACTCCCTCGGAGGTGGCTTATGTTGCTGGCACACTTGTCAAAGA AGGATTTACTGCAATAAAGCTAAAAGTTGCACGGAGAGCAGACCCTACTG AAGATGCTGATGTCATAAAGGAAGTAAGAAAGATAGTTGGAAGCCAAATT CAACTGCGTGCTGATGCAAATCGAAAGTGGATCTACGAAGATGCAATACG TTTTGGTTCTTCTGTTAAGGACTGTGACCTGCAATATATAGAGGAGCCTG TTAGGGATGGAGATGATATAGTTAGATTTTGTGAAGAGACTGGTTTACCT GTAGCACTTGACGAAACCATCGATAACATTCAGGGAAATCCTCTCAAAAC TCTTGAGAAGTTCAGTCATGCTGGAATAGTTGCCATTGTTATCAAACCAA GTGTTGTCGGAGGATTTGAAAATGCAGCATTGATTGCAAGATGGGCTCAG CAGCAGGGGAAGATGGCTGTTGTCAGTGCTGCATTTGAAAGTGGCCTTGG TTTGTCAGCCTATATACAATTTTCTTGCTATCTCGATTTGAAAAGTGCAG AAATATATAGACTGATGAATAAGGAAGCACCAGTACCTGTAGCACATGGT CTTGGAACTTATCGTTGGTTAACACAAGATGTGATTACAGAGCCTTTAAG TATAACTCGTAATCCTTTTAATGGCTTCATGGAAGCCTCTTCTGCAGATG CTGGCCGACTCTTGCGAAATATTCGACTTGATCAGAATTATATCGTCAGT AGGAACTCTGAGGAGAAAGTTCGTCCTTACCAGTTACAAGTTCACTCAAA GGGTTTCTCCATGTCCATTAATGTGCATGAGATTGGAAAAGATACTAATG AAAATGTCGTCGTGTTTCTTCATGGCTTCCTCGGAACTAGTGAGGAATGG ATTCCTGTCATGGAGGCCATCTCAGGATTTTCAAGATGCATTGCGTTTGA CCTACCTGGACATGGAAAATCAAAGATTGAAGTTGACACTGTTACTGAAC CTGCAAAAGAACATATTTTCTCAATTGAGGCAGTGTCAGATATTATTTGC GAGTTGCTTTCTTCTATCAACGCACCCAAAGTAACTTTAGTTGGTTACTC AATGGGGGCAAGGGTTGCTCTATACATGGCCCTAAGATGCGTTGATATGG TTGAAGGAGCTGTTGTAATATCTGGAAGCCCTGGGTTGAAAGATGAGCCT GCTAGAAATATTCGTAGGATGAAAGATGATTCCAGGGCTTGTTCGCTTAC TTCATATGGTTTAAAATGCTTTCTAGACACTTGGTATGCAGGAGACCTGT GGAATAGCTTAAGATGCCATCCGAATTTTAAGGCGATAGTCACCAGTCGC ATGAGACACAATGATGTTCATGGTCTTGCAAAAGTGCTTTCTGATTTAAG TGTTGGAAGACAACCACCTTTGTGGGAAGACCTGAAACACTGCAAATCAC CACTTCTGTTGATTGTGGGTGAAAAAGATGATAAATTTAAGCGACTTGCT CAAGAGATGTGTTCTACAATCAGTCAAGAATCTAGGGGCAACAGGAAGTC CACAACTTGTGAAACAGTAGAAATCCCGGGTTGCGGGCATGCTGTCCATT TAGAAAATCCTCTTCCAGTTGTTAAAGCAATTAGAAGCTTTCTAACGAAT AAAAGAGTCTGA
Pep:
>DCAR_023734pep MIFLPVQTHSLSFPFHFPCNFHDQQQCNTRISITLPNHTFSSPRSSRFLP LHRPATRHFKVMANARKENKVLEAGEVELLMATCITRTLSPALTLEHGLD QIDNAIRHLKSNPPFTTIGMYRFEVLVSPSTRALNWFSSQPESSTIYPQF FMSNEIENSTSVSFRLDTIRGVFGIGTAVSFKGSYSSASAHCASFKSYFS DYSTLVAAYGYMDLRSDPGFYGTGLSYFFVPQLELIELDGISILSMTLAW NDSSLCKFKEAVEANELSLYQARDYLWPRTGESDKKFINSTLTRPEVLTN DNAQMVALNALSVSERDLMHDPTEMKNGAHSHQFTVRFSPTITISCNMYP SNYVAKTSNAFQDYANINTLWASLIIEECSRLGLTYFCVAPGSRSSPLAL AASAHPLTNCTVCYDERSLAFHAIGYSKGSHIPAVVITSSGTAVSNLLPA VVEASQDYVPLLLLTADRPPELQDAGANQSINQVNHFAPFVRHFYGLPVP TDIIPARMVLTSVDSAVYWATSSPCGPVHINCPFREPLDSSPKNWMLSCL KGLNSWMMSADPFTNYVNIQHTFPSNEAHGSLREIVNIMKGAKRGVLVLG AISSEDDIWAALLLAKHLLWPVVADILSGLRMRMYTSSFSEIRGNFVFVD HLDHTLLSDAVRDWAQADVFVQIGSRITSKRISQMLEDCFPCSYILVDKH PNRHDPSHIVTHRIQCTAAQFADHVLKASINGISSNWTSFLCALDTMVSR EISFLIHQEQSLTEPYIAHVILEALNCGSAVFVGNSMPIRDADMYGSNWT NCTHSNDILLSSGLPCHGIRVSGNRGASGIDGLLSTAVGFAVGCKKRVLC VIGDVSFLHDTNGLALLKQRIPRKPITILVINNHGGAIFSFLPVAATTEK RVLEQFFYTSHDVSIQNLCLAHGIKHVHVNRKVDLQDALISAQHEALDSV IEVESCIEGNTSFHSCLKKFASHAADHSFNVLTKLSLSNSALRGSTYCTI QKLEYSLYRIRLCAPPTSARVTRDSTTFYREGFVLALFLKDGNAGYIFPS VRCGLEMAILNAIAATEGSSLLNILQPLTESEKQTSAVPPNVRICALLDV KGTPSEVAYVAGTLVKEGFTAIKLKVARRADPTEDADVIKEVRKIVGSQI QLRADANRKWIYEDAIRFGSSVKDCDLQYIEEPVRDGDDIVRFCEETGLP VALDETIDNIQGNPLKTLEKFSHAGIVAIVIKPSVVGGFENAALIARWAQ QQGKMAVVSAAFESGLGLSAYIQFSCYLDLKSAEIYRLMNKEAPVPVAHG LGTYRWLTQDVITEPLSITRNPFNGFMEASSADAGRLLRNIRLDQNYIVS RNSEEKVRPYQLQVHSKGFSMSINVHEIGKDTNENVVVFLHGFLGTSEEW IPVMEAISGFSRCIAFDLPGHGKSKIEVDTVTEPAKEHIFSIEAVSDIIC ELLSSINAPKVTLVGYSMGARVALYMALRCVDMVEGAVVISGSPGLKDEP ARNIRRMKDDSRACSLTSYGLKCFLDTWYAGDLWNSLRCHPNFKAIVTSR MRHNDVHGLAKVLSDLSVGRQPPLWEDLKHCKSPLLLIVGEKDDKFKRLA QEMCSTISQESRGNRKSTTCETVEIPGCGHAVHLENPLPVVKAIRSFLTN KRV*