Resource Type:
Gene
Organism:
Name:
DCAR_002862
Identifier:
DCAR_002862.gene
Locus Tag:
DCAR_002862
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_002862, is a part of gene, DCAR_002862. |
| The genetic_marker, MK004615 K2059, is located in gene, DCAR_002862. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_002862 | DCAR_002862.mRNA | mRNA | DCARv2_Chr1:33516891..33521473 |
Sequence:
CCCTACTCTCTCTGTTTGTGTGTGTGTATTTTTTGCTGTTAATTGTTTTG
TTTAATTTTTGTTGCTAATTTAATTGGAATGCTCGTCTGTTTAGAGAAGT
TGATCTTATTTTTTTTATAAAATTAATAAAATGCATATATAAGTTGATTT
ACAGGAGGGGCACACATGTCGAGAGCATAACTACTTCATGCTACATTTAG
GAGTGTAGGCAACTGTTTTTGCTTTTTGAATTGTTTTGGTTGTATTATTA
AGTTACTAGACGAACAATTCTAAGATGTTTAGATGTAGCCAGATTGTTGC
CTAAGCCGGCTTCGTTGTTTAAGTGTTTAACCCCTTGTGAAAATGTTCGA
AAATAGCCAAGCAAAGACACAAGATCAGTACAAGTTGTTATGTATCCCTC
TGGTAGACAGCATGGATATACGCCTTAACAATATATTTCTTTGTCATCTA
CAGAATCATGTAATATAACTTTTCTGTAAATGACAAAGTCATTTACTATA
TAAAGTTTTATATTATTATGATCCACTTAATTATGAATTTATGGGAATGT
GGCAGTATTTGAGTTCAGAATTCCTAGTTCTTTTTATTACAGTACATTAG
TGTAGTGATATTCCGAATCTTCATTTGATGCACGATTTATGCTAATGCCG
TTACTGCCATTTTGCAGGTTATGGGGTGCCCAAACCCAAAGATCACTACA
AAATTTTGAAATTGGTGGTGAGCGTGAGAGAATGCCCGAGCCCATTGTTC
GTGCTTTTGGCATCCTTAAAAAATGTGCTGCCAAGGTGCCTTGCCAGTGC
ATTCATATTATAATCTATATTAGTTTTTGTTTTGATATTGTCCTATTATA
GGGCAGCTACTACCGATTAAAGTGTAGAGATTGATTTACTAATATATCAA
CTACTTCAATACTTATGTCACTTTCCTAGATGTATGTGATACATTTTAAT
TTTGTTAATGAACAGGCATGCATCAAAATGTTTTCAAGTCTTTTTTAGCT
GATGCGTGTTATTGGCTAATATGGGACATGCTTATATTGTAGGTTAACAT
TGAGTATGGGCTTGACCCATCCATAGGTAAAGCAATAATGCAAGCTGCTC
AGGAAGTGGCTGAAGGGAAATTGAATGATCACTTCCCCCTGGTGATATGG
CAGACTGGCAGCGGAACTCAAAGCAACATGAACGCCAATGAGGTGCTTTA
GAAGTTACTTGTTATAATATGTTAATACCTTCACTTTGACCCCCCCCGTG
CAATTCCATATTCTGTAATATGTGGTGTGTTTTCATAACCCTTTAGTATA
ATATTAGTTCTTCTCATAAAACTTCTCAGGTAATTGCAAATAGAGCTGCA
GAAATTCTTGGTCACCAAAGAGGTGAAAAGTTTGTGCACCCAAATGATCA
TGTGAACAGATCCCAATCTTCTAATGATACATTTCCAACTGTAAGCCTTA
ATAAAAAGTGTCATTATATTAGGTCGTCATTTTGAAATTTTGATTATCAA
CTTCCTGTCAGTTATAACTTATATGGGTTCTGTCGTCCTTTATTAGGTAA
TGCACATTGCAGCTGCAATGGAAATCAATTCACGATTTATACCGAAGTTG
AAACAGTTGCATACTACTCTAAACTCGAAGGTTTGGTGTTGTACTCTAGC
TCATGTTAACTTGAGTTATTAGTCGCAGCTAATGGCTAATCTTCATGCTG
TTAATGAGTTCTATAATTCAACTAATTCTAACACTTTCCACCTTACTGTT
AATGTAAAGTCATTAAACTTGTAATTTTATATGCCAACACACACAACTGT
GTAGGGTTATTTTTGTGTGTGTATGTGCGTGGATATATTCTGTGTTCAAA
ATTTAATAAAAGCAATAGTATACTTGTATCATAAACTTCAAATTAATCAT
GTTACTCAGAAATAGAGCTTGGGAATGCTGCCCCATATAATATAAGAATG
ATATTTTGCTCCGAAGTCAGGTGGCCAAGCCACTATATCGTACCGGTTCA
GGGTTTAAAAGTTAACTAGTAGTCTATTCTTGAAACCGTGCTCTGTTGCT
TAGTTTTATGGTTAGAATATCTTGAGTTTTGTTGTGGCTAGCTTGTAGAC
TTCCACCAAGCTCTTAAGCATATATATATTTTGACAGGTTGTGTTCCCTT
CATCATGTGCGGTAATCTATTATATGAAGACATATCAATTACCAAACTGT
TATATTTTAGTTTTTTTTAATTGTTTTTTCAAATCAATTGGTTCTCGTAA
CATATTTCCAACATCATATATGCTTTTACTAAGTTGTGGTTACTTATAAA
CATAAAGGAGTTGCCATCTTTCTAATACTATTTTGTTTTGTTGCTTGCCA
GTCGGTTGAGTTTAAAGATATTGTTAAGATAGGACGAACTCACACACAAG
ATGCAACACCTTTGACACTAGGGCAAGAGTTCAGTGGTTATACAACCCAA
GTAAGCTCATCGTACTGCTATCATAATGATAAGTTGTTTTTGGTTAATAC
CTATAAAAAGTATGTGGATGAACATGTGAATAACTATGCTTACAGGTGAA
GTATGGAATTGATAGAGTGATGTGCACTCTCCCTCGCATGTATCAGGTAT
GTTTAAACAAAAAAATGATTCCTAAAACTTCCCTTCTTCCCCATATTGTT
TCTCCTTTTTGTATAGGTCTAACCGGTTAAATCCTGCTTGTAGCTTGCAC
AGGGCGGCACTGCTGTGGGAACTGGATTGAACACAAAGAAAGGGTACTCC
TTTCTATTTGTCTAATATGAAGTAAATTGCCTATATACAACTTTATTTTC
CTTACTTTACTTTTCTTAGGTCCATTTATTAAATAATTTTCTTGTTTAGG
TTTGATGTTAAAATTGCTGCAGCAGTAGCTGAGGAGACTAAGCTACCATT
CATAACAGCGGAAAACAAGTTTGAAGCGCTGGTAGCTTTTTTAATTTTAT
ATAATTTGGTTTCTTTTGATTACAAAGCTTCTCAAAGAGATCTTTGCTTA
CTCTGACAATTAAATGTACTGCTTTTTGTGCAAATTTATATGGTTGTCTG
TTTCTCTTAGGCTGCTCATGACGCTTTTGTTGAAACTAGTGGGGCTTTAA
ATACAGTTGCTGCATCTCTTATGAAGATTGGAAATGACATACGGCTATTG
GGAAGGTATATGTGGAACAATTTGCTGTTGCGGTATTTTTGTACTCTCCT
TTGTCCTAGATGCTAATATATGTTCACTTTCCAGTGGGCCACGGTGCGGT
CTTGGTGAACTTATACTACCTGAGAATGAACCAGGCAGCAGTATTATGCC
TGTAAATTCTTGCTGTCATTTCAGCTCTTTAAATTGCCAAAAGTTATTCT
TCTTTTAAAATCTTGTTCTCAAGAGCTTATTCCATTTCAGGGGAAGGTAA
ATCCTACTCAATGCGAGGCTCTCACGATGGTCTGTGCTCAGGTAAGATTC
AGTCCATTATAATTTAGTCATAATTGAATCATATAAACCACATCAGAATC
ATATACAGGAAAGAATCGAAACTATATGGAAACCGTATGTGAATCCTGTA
ACTTATCCTGGCTCAATAAATGCCCTTTTCTGAAGTCATTTAATTGGCTT
AATAATTTGACTGGCAGGTCATGGGAAATCACGTGGGAATTACTGTGGGT
GGTGCAAATGGACATTTTGAGCTCAATGTTTACAAGCCAATGATCGCTAG
TAGTCTCCTACATGTAAGTTGCTGGACATTATGTTTAAATAATGAAAGTG
CTCTTTTCTTTTCTTTATATGCGTCTCCATTTATATATGTACCTAGAAGG
GCTGTGATTCAGCCCCTTGAGTATATCCTTTCACTAAATGCTGGCATAGT
CGTGTCAGGAGGGCTTATATTGGGAAAAGCGTCTAACTATTGGTTCAGGT
GGGCCACCTAGTTGCTAGGAGTGGAGTTAATTATACCCAATTTTCTGCAG
TAACATTAGGTGTTTCCCCCAAAAGGTTGGGGAAAATATGGATGCAGGAA
AAAATCAAGCAAAAATTGGTTTAGTTGGGAAAAATTTTGGCCTAGGCCTA
CGCGGAAGTGGTAATAATATAATTTCCAAATAAATAATAATATCGAAAAG
CATTCGATTAGTATCTTAACTAATCCTGTTATTGCCAGTTAATCACAAGA
AGGTACCCTCACATCCCAGATCTTCCTAGGGATTTCTTAGGAATCTGGTA
ATGATATACAAACCTTTACTGGATCACTTTGAGACCAGATTTGAACTTTA
AACTACAGAGGTGCTTGATGCAAGGGTGGCAATTTCGGTTAAGGGGTCCG
GTTGTCTTACCTGATCCAGTTTTTGGGTCAACCTGAACCTGAAAGGGTTG
GAAAATTCAGCCCGAGCCCGAGCCCGACATGTTTCAGTACCCGATCAATC
CGAAAATGGCCTGAATTGACCTGAAATTTAATTAAAATTATTCTTTTTAT
TATATAAAATTATATTTTATTATAATATTTTTAAAAAATATAAATAATAA
TTTAAGTGGATAAAGATGTTTAAATAATATATAAATATATGACAAATGTA
TGTAATTGTCTAATAATAATTTATATTATATATAAAAATATTCCGGGTCA
GCCCGGTATATAAAAATATTCTGGGCCGGGGTCGGGTATACCCAAGTAAT
TCGGGTAAAAAATTACCCAACCCGACCCCAACCTGAAATATAAAAACTTC
GAGTCGAGTTCGTGTCGGGTTTTAGGTCGTGTCAAATTTTGACACCCCTA
GCTTGATGTGTCATATAAACCTTTCTTGTAGTTTATCACTTTATCCTCTG
GTTTCTTCTCCTGCGATGAATACCTGCCAGATCGAAGGGGAACCATCCAT
AAGTTTCAAGGGTGACTGTTAGGGTTGCCTTATCCTATAGGTTTTGGAGC
TGATGTTTGTTATTGCATTAATATCAGACAGAGGCGTGTCCAACTTAAAT
TGTAGTCTGTCGTATAATAGATACGTGAAGTAATGTTGCAAAAAGAGTGG
CTGGTGTTTCAAGAATATCACATAATTTTGTGGATATTATTACTTGCATT
TTTTTGTTTTGTGTTGTGTGGAGTGTTGCCCAGCAGACACTTTGGTATCG
ATGCCATTCCTAATAACCATGTTATAGACTTCTTTCAATATTCTCTATTT
ATATGAAAATTTTCAGATGAAATAGAATCCTCATTTGAGCTTGCAGAAAA
TGTTGCTTTTATCTTATCTTATGGTTTTGAACATTGATCAGTCCGTGAGA
TTGCTAGCAGATGCTTCTGCTTCTTTTGAAAAGAATTGTGTGAGGGGAAT
TGAGGCCAACAGGGGAAGAATCTCAAAATTGCTACACGAGGTAGACTGAT
GCGGAAAAGAAAACATATATATTTTACAATATATTGCTTGATGCATAATT
TGTTAGTTCCTTTCTATTCTATAATTAAGAAATTATCCTTTTCTTGCAGT
CACTCATGCTCGTCACCTCCTTGAACCCTGTAAGTTTTTGCTGTTGATTT
TATATTTTCAAAATTCCTGGTTGCTTTCTGTATTGTTAATGTATATATGC
CATCTTTTTTAGAAAATTGGCTATGACAATGCCGCAGCAGTTGCAAAGAA
AGCTCACAAGGAGGGAACTACTTTAAAGGTCACATTCACATTTATATTCA
TTTCTGATTATACATATCACAAACTTGCATGTTTAAGCCTTTCAGCAAAA
ATGTATCCTTAAAATGAAGTGTTTTGGCATCTAATCTGGTAGTTCCTACT
GCAGGAAGCTGCTTTAAACTTAAAAGTGCTCACCAGTGAGGAGTTTGACG
AACTTGTAGTGCCTGAAAAAATGATTGGTCCCTCAGATTGATTCATAGTG
AGTGTAAAAGTTTCAAGAATTCGCACCCACAACACAGCATAGAAATAAAA
TCCAAAATGTGATTATCCTTTACTGGAACAATATTATTCTTGAGGTTCTC
TCCTGTGTAGAATTCATTTTTGTTTTTTCTGGAGATTCCAGATGTGACAC
TTGAAATGGGGGAACCTCCGCATTTTTTTGCGTAATGCAACATAACAGTT
TACGGATAAACGCAGTTTATAGAGAATGATTAACGGATGATCAAACCAAG
TTTTTTTTGCTAATTTTACTTTTGGTCACATCTGGTCTTAACATACAGTT
TACATGTACCATGCTATGCATATACCCATGTCTTTCATTATAGTAATATA
ACAACCAGAAAAGCACCGCGTGTCTAATCAGTCAAATTTCTTGGACATTG
CTGGTGGTCGGACAGTGGACTGCAGACTCCGAAAATAATAGAGCATATTG
ATTACCAAAGTGGATGCTAGTTATTTATATAGTAATATCTAGGTTTATAT
ATTTGTAGACAGAATGATTAAAGTTTTGCTGTTGAATAGATAATGTTGTA
GCTCACATTATTTGTTGTATGGATGCATCTGATCTAGCTCAGCAACTAGG
ATGCTGTCATCTAATGATCTGCTCTTAGACAAGTCATGTCGCTGTATTGT
ATAGAACACCCGTATTTAGCATCTGATTCTGCTTGAATACCATCACTGTC
ATCACATTATCAGCGCCTAGACAAGTTATGTCGCTGTATCGTAGCTTTTA
TAATATGAAGATTGATTAGTCGTTAGCCTCCAGTCCCATTGACATAAAAT
AATTTGTTTAGTGATAACAACAAAGATAAGAAAGTTAGTTGCTTTTTATA
TATCGAATTTTCTATGGTGTGCCCAAGGGCACACAATAGTCACTAACTCT
CATGATAATTCTAGTTTTTGATTGGTGGATGGATAATAAATGTAAACGGC
CCCTCTGCATTCACATCAATTCCATCAATTAAAACAAGCTATTTTCATGA
AAGTTGGTGCTTATTGTGTGCCCTTGGGCACACATTAGAAAGACCGTTTA
TATATATATGAATGATTGTGATGGGGTTGGGGGAGACGGGACTAGGGGTA
ATGGATGGAAAAACAGTAGGGACGATAAAGTGATGTTATGAAGGTAGTCT
TATTGCTGGGTCGTAGTTCGTTGCACCTGTCTTCTCTTGTTCAATGCCTT
TTGGTTGGCATGCTTTTGTTTTTCTGATCCCACGAATCACATTCTTATAT
AGAAGACACCAACTTTGAAATTTCCATTAGCATATAGTAATATTTTCATT
CATATTTTTTACTCGTACTCGTCAAAGCTGCACTCATGAAATTATTTTCT
TACAGTCTTGCGACAATCATGTTATGGAAATATTTAAATATAACATATCC
TTTTTTTTTTTTACTAATAAACAAAATTGTGTTTAAACAGTCACGTGAGA
TCAGTGCGGATCCAGGATTTGATGGACAAAGGATTTACTCATCATTGAAA
AAATAGTATCTCATTGATAGTTTTCAATGACAAATATAAAGTCTTACATT
ACAAATCTGTTACCAAAACACTAAATTATGTTTTCAAGAATGTGTTTATA
GATATATAATTTTAATTTTTTGATGATGTAAAGTAAATACAAAACACATA
ATTGCGGCCAATGAAAGAGGTAATTGCTGTTTAATAATTCAAACCAGTTA
AGAAATTAATGGAAAGTAAATAGAAAACACACTTATTGATTAGTTAGGTG
AAAAAAAGCAGGCTAGGAAAGAGGTAATTGCTGCTTACTCACTCATGTTT
GCGACTCGGAGACAGTGACATGTTCAGGGCAGATGAAGCTAACTACATAA
GAAAGTTGGAGAAATAAAAAGTTGCCATCTGTGTATCATGATTTGATTAA
TCTTTGGCAACTACAGTTGTAGTTGTATGTACAAATTATTTATTTCAAGA
GATAAGTCGGATCACATTCTTGCACAGACCAACCCACGCAGCAAAACTGT
TGGCCACCGATGACCACCGAAAATCCTCAACTACTCGGCCTTTTCGCAAC
ATTTTTATTACTCCACAGCTTTTTTTTTTCCGAACTCCACAGCTTTTTTT
TAGAACAATGAGTATGCAACTACTGCTGCTCACTGTATTCACCTGAATCC
GCAGTAATGTTCTAAATTTTTTTAACTCACCGACCATTCGTTTTTAAAAT
CCAATTAATTCTGATAATTTTTTTAATCGAATTATTTAAAATAATTTATT
AAAATTAAAATATTATATTATTTTAGATATAAATGATTGTAGAGCTTATG
ATATAGTAAATATATATTTATTAATATATAACTAATATAACAATAAATAA
ATAGCAAATAATATTATATTATTATAATTTAAATGAATTCTACTCTGATT
AATCCTTTCATTAATCTCCAATTTTTGATTAATTCTAGATCGATAACTTA
ATCGATTAGGTCTGATTTCTAATTTATCTTGCACACCGCAAAAGTGCTTA
ATAAAAATCATGGGCTGCTTGTACAGTTGTTTGTTTTCTTTATTGTGTAT
TTTAGAAATTTCATGATATTTATTAATTTTTTCTTCTTTAAAAGAAAAAA
ACCACATTAAAAGGGAGTGTAAAACATAGAGAGAGCGTTGGGACAAGATC
CGTTAGTAGATCCGAAGCAGACTTTACTTAGCTTTACATCACACGTGCGA
GTTTTTCCTTTTTTGTCCGTGAGCCTCAGCCCCTCTCCACTTTTCCTTTT
ATTTTCTTCAATTTGCTTCCCTCCACTTTACTCCATTGTGTATACCCACC
CCTCTCTCCTTTTATTCTCTCTCGAAGTATCACTCTCGATATTACACACG
TAGGGAGAGAGAGATTTACACTTGGAGAGAGAGATTTACACTTAAACAAA
TGCAACAAAATCATTTCACATCAAGCATCATTTCTTATTGAGGTAAGTGC
AAATCCTTCTCTCTTTTGTCTTATTTCTTCAAATATGCATTATTCTTATT
ATTCTAATCACCATTTCAGTTTAATTGCCAACCCCCCACCAAAATTTGGC
TAACAAACTACCAGAAAATTAAAATGGGTGCTTCTTGTTTGTTTCTTTTT
CAAGCTCCTAGTTGCAAGATTTCAACTTTTTTATTGTTTGAAGTTTTCTT
TGCAATTTAATTGAGTTTTGCTGAAATTGCCATCCTATGAAAAAAAATGG
TGTCTTGAACTCTTGATGCATAAAGAATAGACAAGGAGCTTGTTGAGAAT
ATGACATCTGCAGTATGTGGGGGAAGATTTAGTGATGCTGTTGTCAAACT
TTGTGGGGATAACTTATATTATGGGCAGTAATGTGATTAGTTAAGGTATG
TTGGATATAAAACACACACACACACACACACACACACACACACACACACT
TACTATAGTATTCACTACTCACTAGTGATGGGTAATGTCTTTTCAGTTGT
GCATCAAGTCAAAAGAGTTCAATTAATCTCTATTCTTGGATGAATTCTTT
GATCTTAATCTTAGACAAAATCTTGGGATTTTATTTTGAAGAAATCAGAA
GTATGAAAATTTAGTAATATGCATCTTGACTTTGGGCTGATTTGTAAAGT
TTTTTCGCCTGGTTGAATATTATTAGCTCTAGTATTTTTAGACATATTAA
ATCAAAAGAGTTATTGCTTTGCACTATATTTTTTAGTTAAGGAAGGGGAA
ATTTCTTAATCTGATTTTTTGTGGAAATTGGCACAATGAGATTGTTGTCA
CAAAAGGGAAAGAATTTCCTTGAGATCAAACTCTGATATGTTCTCATCAT
ATATGTTGAAATAATAGTGATTTCATGCTGGGTGATTGCTATCTTTTGTT
CTTTTTAGTCTGAATAACTCTGAGATAGTTATAGACTTATAGGAACTTTG
TATGCATAAGTGGTTTTCCTTGAGTACTATTTCCCAGTACAATCGAATTG
CTTTGGCTGTGTCATATTGCTCATCTAGACATGTCTATAATCTTACACTA
TCACATAAATACCTTATAATTTAGTTTTAGAAGCTTTCAAATTTGTCAGA
GGGTGCTAAAGTTCAGGGTAGGCATTTTCACAAGATAGTATGTTGTTTAG
ACTTGTGGTGTTTATCTATCTAAATAATTAGGCATGACCTAATATCCATG
TGGATCCTATATATTCAACCCTTAGAGCAATGTTTACAATCTTTTAACGT
ATGACATCATACAATCAGGTTAACAAGTTCTTGGGGGACTCCAGGGAATG
TTGAACTCTGCCTCTTCCAGAATATTTGCTGTCATGATCTTTTGTTTTGC
TTGTTTTTACTTGAAGCAGTTTCTACTGATTTCTTAATTAATCACTTCTG
TTAACCACTGCCCACTACCCAAATAAATGAAGTAGTAATTACGTTGATTA
AAAATGTCAGATGCGTTTATTTAATTGGACAAAGAAGAGGATTATCTTCT
TCATAAATTGCAAAAGTTAGGATTATACACCACTGACATGTATTTTATGC
AGCTTCATTTGGCTGTTGCTGGGAAATGGAGTCTTGCGATTGTTTTGAGA
CTCACTGGCCTCCAGATGACCTTCTAGTGAAATATCAGTATATTTCAGAC
TTCTTTATTTCCTTTGCATATTTTTCTATCCCCTTGGAGCTCATTTACTT
CGTCCAGAAAGCAGCATTCTTTCCTTATAGATGGGTTCTAGTGCTGTTTG
GTGCATTCATTGTTTTGTGTGGAGCAACCCATTTTATAAGTTTGTGGACA
TATTCAGTGCATTCTAAAACTGTAGTAATAGTGATGACTGTTGCAAAAAT
GTCCACCGCTTTTGTGTCGTGTGTAACAGCTTTAACTCTTGTGCACATTA
TTCCTGATTTGTTGAGTGTCAAAAAGCGTGAAATGTTTTTGAGGAAGAAG
GCTGAAGCGCTTGACTGGGAGAGGGGCCTAATCATTAAGCAAGAAGAAAC
TGGAAGACATGTCAGAATGCTAACTCATGAGATCAGAAGCACTCTTGACA
GAAACACTATACTAAAGACCACCCTTGTCGAGCTGGGTAGGACTCTAGAT
CTTGAGGAATGTGCACTGTGGATGCCATCACAAAGGGGTTCCAGTTTACA
ACTTTCTTACTCTCTTAACAATCTGATTCCCTTTGGCTCAACTCTACCAA
TTAATCTTCCTATAGTAAATGAAGTTTTCAATAGTGCTGATGCAATACGA
ATCCCACATACATGCCCACTGGTGGGAATTAAAACACATGTCGGAACATA
TGTTCCTCCTGAGGTTGTTGCTGTTCGTGTACCTCTTTTACATCTTTCAG
ATTTTGAAGTAAATGAGTGGCCAGAAATTCCTGCAAAACGTTATGCTGTG
ATGGTCTTGATTCTTCCTCTGAATGGAGTAAGAAAGTGGCGTGACCATGA
ATTGGAACTGGTTGAAGTAGTCGCTGATCAGGTATGTGTTGTCTACTTTA
TTTTGTTTACTGCAGCTAGATTTACATGTCTTCTTCATATCACCTAAACT
ATGTTTCAAGATTATTCCTTTAAAGCAACTAATCTCAGCTATCAATTTGT
TCTTTTTTGCTCAACATCTCAAGTAGAACTTGACTTGTGAACATTGTTCT
GTTTTTTCTAGTCTTTATTTCTACAACACAAGAGAAAACAACTTGTAGTC
AATAATCATTATACTTCTTCACAGGTCTTGTTGGCTTAAAGCTACTAATT
ACTTAAAGTCTAATTCTTTTACTAAAATCTTGTGAATTTTATAATTCAAT
TGATAATGCTTATCTTATAAAATTTAAAATTACAGATAATAACAGCAGAG
TGATAGAAGTTACATGTCTTGAGGGTAATATTGATTTTGTTAAGTCATAG
ATATACAACTCAAAATGAGTAAATAATAATAATAAAATAAGAAACCCTTT
TTTACTTTATCCAAATTCAGCTTAAGTCGGTGCAAGTCGTAAGTTTTATT
TGATAAACAGACTAAATAAGTTTGTTTACCAAACAGCAACTAGTCTTCTT
ATAGAATTTCAAGAAAAATCCTATTAATTCCAAGGAGAAGTTGTATACGC
ACTATATAAATGTTTAGGGTTAGGATAACACCTCGATAATTGACTAAAAA
TGTACGTTATGATTTGCCATGTGTAAATTATAAAATATAGTTTTGTAATT
AACATATATATTATTCACCAGCTTGTATAGGCTAGATTAGTTTGTATATG
AACACAAGACCATACATATCGAACCTAAAGCTACTCATTCAGGAGAATCA
CTTTCGACCAAGAGCAATTGGCAATAACTTAGAATTTATATTAACTAAAA
GTATCCAGAAAGAAAGCAGTTGTCTTGGTTATACAAATTACCAAATAGTT
AGATATATTAAGAAAATAAAGTAAGGTCAACATATATACATAATACTTAT
TGTTCGTTTTAAAAGAATTGATTTAGTTTCTTATGATGTCAAATTTTATA
CATATTTTTTCCTGGGTTCTCTCATGGAGGAGTAGGAAAGTTTTGGATGG
TGTTGAAGTAAAGGAGAACAGAATAAACAAGAAAAACTCTACAAAGGACT
TGGAGAACTTAAAGTGCTAATAATATGTTGAAGTTAGAATATGACCGCTA
GTTTTGGGTGGTGCGGTAAGTAGCATTTCCAAGTGAAAGCTATGCTCTTT
GTGGCACAAGTAGCTGAACTTAGTTTTACGAGTTCCAATCTTTTTTTCTT
TAGTTATTCATACATTTTCTTTTTGTGTTTTTTTAAATCCACTGTCTTTT
GGATTAGTACAGAAAACCATATCTCAGGTGAAATAATAGAGGATCCAAAC
AACCTGGAAAGCATATAACGTCCACTAGGATTATTTCTGTCTGATTTTAA
GAAAGATAACCATATAATTGAAACATAACCATAAAATTGTCCCTTCTACT
TTTGCTTAAAAAAGAAGCAGCTCGTAAACAGATATATTCCTCACTGAAAG
CAAAATAATTTTTTATTAATGTGGGTAGGTCAATCACAAGGAAATTAATA
TACAGACACACATATTGCCTCCGCTGAGTTCGAACCCTCGACCTTTCGGA
AGGATGAGGAAAATCCTATTACATTTCCAAAGTTAGCTATACATAATATG
ATAATGCAAGTTTTTCCTCATTTTTGTTTCAAAACAATCCATTTTGTTCC
TTTATGACTTGGATAAACATTGTCGATTTATCTGGTTTCTAGAGCTTACT
AAATTTGACCAAGCTATGTCTTTCACATCTTATGGAATTTCCCCCTCCCA
GTGGGATGATCATAAAAGTTAAAAATAAAGACAAAAGGTTATCCACAGAA
AACAACAACGATTCTATGCAACTCCCTCGTGCTCAGTCTGCCATATTGTT
TTTACAGGTCGCTGTCGCTCTTTCACATGCTGCAATTCTGGAAGAATCTA
TGCGGGCACGTGATCAGCTCATGGAGCAGAATGTTGCTCTGGATTTAGCA
CGACAAGAGGCAGAGATGGCTATTCGTGCTCGCAATGATTTTCTAGCCGT
GATGAACCATGAGATGGGGACACCTATGCATGCAGTTATCACCTTATCTT
CACTTCTACTAGAAACAGAATTAACCCCAGATCAGAGAATGATGATAGAG
ACCGTACTTAAGAGTGGGAATCTTCTGGCAGCACTCATAAATGATGTTCT
AGATCTTTCTAGACTTGAAGATGGTAGCCTAGAATTAGATAATAAAATCT
TTAACCTTCATGACGTATTTAGAGAGGTAAAACTCAAAACTGCTATTTAG
TCTTAATATATATTAGTACTATGTCTTCACGATACAATTATTATATTTCA
TTTGTGTGCAGAGCATGAACCTTATAAATCCTGTTGCCTCTGTAAAGAAC
TTGTCAACAAACTTGACACTGGGTATTGATCTACCGGTCCATGCTGTTGG
TGATGGTAAATGGCTTATGCAAACTATTTTAAATGTTGTGGGAAATGCTG
TAAAGTTCACAAAGGAAGGTTATATTTCAGTGGAAGCTTCAGTAGCAAAA
CCAGAGTATTATAAATACTTGGGGAATCCGGAATTCGTTCCCATGTCAAG
TGATAATCACTTCTATTTACTAGTGCAGGTCAGAGATTTTTAATTTTTTA
GTAGATTACTTTGTTGAGATCTTCAGTAGTGGACCGATAGTTTATTCAAT
GACAAACGCCCCTCTTCATCTCACCAGCTCACCCTGGTAGAAAAGAAAGA
GCAAAAATCAGGAGAGGCTTGAAAACAATAGTTGTAGCAAGTTTTGATTT
TTTGTTACTCCTTTGGGTATTTTACATAATCAAATTTAGTTTTCCCTCAA
AGATGCTTCATATTATTTGACTAAATAATTTATTTTTCTCTCTATCTGCA
GGTGAAGGATTCTGGTTGTGGAATTAGTCCTCAAGATCTTCCACTTCTTT
TCACCAAATTTTTAGAGTCTGGAAATGCCTCTTCTCGAAGCAATTCTGGC
ACTGGACTTGGACTTGCCATTTGCAGAAGGTAGGAGTAGGCTATTTTGTT
TGGAGAGATTATAATCCATACTTTGTAGTTTATCACTGGATCAATAGTCT
TTAAAATACTAATCCCATGTTTGTTTTGTTAAACATGCCGGGTAGACCAT
CTAATCTCCTGTAGAACATATTTCTACACTTTCTAATTCCTGGACTATAT
TCCTATGTAGATTTGTATAAAACAGATGTCTAAAATTATAAAATGATTAT
AGTTCAGTCCTCAAATATCCCTCAGATTAAATCAAATGTAGACTTAGGGT
TGACTGGTATCACAAAAGGATTTATTTTATTAGAATGCAATGCCCAACCT
CTTCTTCATATACAATTGCTTCAATAGTTGTCTATCCTTTCCTCTCAATC
TGGCTTGGTATATTTTTAGGTTCTTGAATCTCATGGGAGGTCATATTTGG
ATCGAGAGTGAGGGCCCAGGCAAAGGCAGCAAAGTTGCATTTATCGTGAG
ACTTGGACTATGTAACAACGCAAGTGAGCCAACAATACAACAAACAGTGA
TGCAAGGGAGAGCTCACAGAGGTAGCGGCGATCTCATTGGACACAGACTT
TTTTCAAGAGACGATTATATAGCTACTTACATTCCACGTAATCAGAGAAG
TTTTTAGTCGCAACTGGTGCTCCGAGGAAAAAGATTATGTAGGTTTAAGT
TTTCAGGCTCACTTTTCTCTATTAGGTAACGATTATTATTGGATTTAGCA
GTCATGCTGTTGTTCTAAGGTCGCGGGTTATTACAACTTCAAATCACTGA
CTAAATTGTACAATAATATGCAGTGTACCCTGCGGAGACACTTTCACCAG
TTCTGGTTTTACACCAATTAGTTTGGATTTGCTTCATTTGATTTCCACAG
TTGCGTAGCAATATTTTCTGCTCTTTTATCCACTAAATTTGAAATTGATC
ATGTTCTATGCTCAGAAAGGGTCGAAAAATGACTCTGATGCACGGGTTTT
TGACAACCGATTCACCTCGCAGAACTAGACCTGGTGATTTGGCAATCATC
TTGCGCCAAAAATACAATATCAAAAATTGAATAAAGTATTTCTCTGACAC
CGTCTTCACCTTCCGGCCATAACAAAGAATATCAACATATGATTTCAATA
AATATTTATTCAGTTGTATATTAAGGTGAGCCGAGTTGCTGCGCCTATGA
GCAGAA
Sequence Length:
15506
Sequence Checksum:
d5ec7396b1bbba5bdf571d97c4aa37b0
View location in JBrowse:
Cds:
>DCAR_002862cds ATGGAGTCTTGCGATTGTTTTGAGACTCACTGGCCTCCAGATGACCTTCT AGTGAAATATCAGTATATTTCAGACTTCTTTATTTCCTTTGCATATTTTT CTATCCCCTTGGAGCTCATTTACTTCGTCCAGAAAGCAGCATTCTTTCCT TATAGATGGGTTCTAGTGCTGTTTGGTGCATTCATTGTTTTGTGTGGAGC AACCCATTTTATAAGTTTGTGGACATATTCAGTGCATTCTAAAACTGTAG TAATAGTGATGACTGTTGCAAAAATGTCCACCGCTTTTGTGTCGTGTGTA ACAGCTTTAACTCTTGTGCACATTATTCCTGATTTGTTGAGTGTCAAAAA GCGTGAAATGTTTTTGAGGAAGAAGGCTGAAGCGCTTGACTGGGAGAGGG GCCTAATCATTAAGCAAGAAGAAACTGGAAGACATGTCAGAATGCTAACT CATGAGATCAGAAGCACTCTTGACAGAAACACTATACTAAAGACCACCCT TGTCGAGCTGGGTAGGACTCTAGATCTTGAGGAATGTGCACTGTGGATGC CATCACAAAGGGGTTCCAGTTTACAACTTTCTTACTCTCTTAACAATCTG ATTCCCTTTGGCTCAACTCTACCAATTAATCTTCCTATAGTAAATGAAGT TTTCAATAGTGCTGATGCAATACGAATCCCACATACATGCCCACTGGTGG GAATTAAAACACATGTCGGAACATATGTTCCTCCTGAGGTTGTTGCTGTT CGTGTACCTCTTTTACATCTTTCAGATTTTGAAGTAAATGAGTGGCCAGA AATTCCTGCAAAACGTTATGCTGTGATGGTCTTGATTCTTCCTCTGAATG GAGTAAGAAAGTGGCGTGACCATGAATTGGAACTGGTTGAAGTAGTCGCT GATCAGGTCGCTGTCGCTCTTTCACATGCTGCAATTCTGGAAGAATCTAT GCGGGCACGTGATCAGCTCATGGAGCAGAATGTTGCTCTGGATTTAGCAC GACAAGAGGCAGAGATGGCTATTCGTGCTCGCAATGATTTTCTAGCCGTG ATGAACCATGAGATGGGGACACCTATGCATGCAGTTATCACCTTATCTTC ACTTCTACTAGAAACAGAATTAACCCCAGATCAGAGAATGATGATAGAGA CCGTACTTAAGAGTGGGAATCTTCTGGCAGCACTCATAAATGATGTTCTA GATCTTTCTAGACTTGAAGATGGTAGCCTAGAATTAGATAATAAAATCTT TAACCTTCATGACGTATTTAGAGAGAGCATGAACCTTATAAATCCTGTTG CCTCTGTAAAGAACTTGTCAACAAACTTGACACTGGGTATTGATCTACCG GTCCATGCTGTTGGTGATGGTAAATGGCTTATGCAAACTATTTTAAATGT TGTGGGAAATGCTGTAAAGTTCACAAAGGAAGGTTATATTTCAGTGGAAG CTTCAGTAGCAAAACCAGAGTATTATAAATACTTGGGGAATCCGGAATTC GTTCCCATGTCAAGTGATAATCACTTCTATTTACTAGTGCAGGTGAAGGA TTCTGGTTGTGGAATTAGTCCTCAAGATCTTCCACTTCTTTTCACCAAAT TTTTAGAGTCTGGAAATGCCTCTTCTCGAAGCAATTCTGGCACTGGACTT GGACTTGCCATTTGCAGAAGGTTCTTGAATCTCATGGGAGGTCATATTTG GATCGAGAGTGAGGGCCCAGGCAAAGGCAGCAAAGTTGCATTTATCGTGA GACTTGGACTATGTAACAACGCAAGTGAGCCAACAATACAACAAACAGTG ATGCAAGGGAGAGCTCACAGAGGTAGCGGCGATCTCATTGGACACAGACT TTTTTCAAGAGACGATTATATAGCTACTTACATTCCACGTAATCAGAGAA GTTTTTAG
Pep:
>DCAR_002862pep MESCDCFETHWPPDDLLVKYQYISDFFISFAYFSIPLELIYFVQKAAFFP YRWVLVLFGAFIVLCGATHFISLWTYSVHSKTVVIVMTVAKMSTAFVSCV TALTLVHIIPDLLSVKKREMFLRKKAEALDWERGLIIKQEETGRHVRMLT HEIRSTLDRNTILKTTLVELGRTLDLEECALWMPSQRGSSLQLSYSLNNL IPFGSTLPINLPIVNEVFNSADAIRIPHTCPLVGIKTHVGTYVPPEVVAV RVPLLHLSDFEVNEWPEIPAKRYAVMVLILPLNGVRKWRDHELELVEVVA DQVAVALSHAAILEESMRARDQLMEQNVALDLARQEAEMAIRARNDFLAV MNHEMGTPMHAVITLSSLLLETELTPDQRMMIETVLKSGNLLAALINDVL DLSRLEDGSLELDNKIFNLHDVFRESMNLINPVASVKNLSTNLTLGIDLP VHAVGDGKWLMQTILNVVGNAVKFTKEGYISVEASVAKPEYYKYLGNPEF VPMSSDNHFYLLVQVKDSGCGISPQDLPLLFTKFLESGNASSRSNSGTGL GLAICRRFLNLMGGHIWIESEGPGKGSKVAFIVRLGLCNNASEPTIQQTV MQGRAHRGSGDLIGHRLFSRDDYIATYIPRNQRSF*