DCAR_024573 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_024573

Identifier:

DCAR_024573.gene

Locus Tag:

DCAR_024573

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_024573, is a part of gene, DCAR_024573.
The genetic_marker, MK003027 K0471, is located in gene, DCAR_024573.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_024573	DCAR_024573.mRNA	mRNA	DCARv2_Chr7:16413362..16422773

Sequence:

ATGGCTATAACATCATGTCAAATAAACTGGGACAATGTCCTTGAATTTAC
AAAGATTGCACAACACAAGGGTGATGATCCTATGTTGTGGGCCATACAGC
TCTCTTCTAATCTTAACTCTGCTGGGGTTTCTTTGCCCTCACCTCAGCTC
GCCACCCTTTTGGTCTCGCACATTTGTTGGGATAATAATGTCCCCGTTGC
TTGGAAATTTCTTGAAAAAGCTCTGGTTTTTAATATTGTGCCTCCTATTC
TTGTTCTTGCTTTGCTCTCCAAAAGGTATGCTTGTTTTTGTTTGATGTGG
TCATTTTGTGTTTCATTTGTATTGTGGGGTTTTAGTGAATGGGTTTTTTG
TATTTTCTGCAATTGTGCTTGGTTGCCTTTTTTCTTGTTGTTGTTACTGT
TTGATTCAAGAAATGGGTTTTTGTAGATCATGACAATGATCTTATGTAAG
TAAAAAGTAATTGATTTGTATATATTGAAGTTTAACTTCTGTTTGGGCTG
GGATGACAAATTTCAGCCTATTTGTTTGCTGTTTGATGGTGTTTTCAATA
GTTTTGTAAAAGATTATTATCATCATAATGATGTCTGATTTTGTTAATTC
CTCCTCCTTGTGATGACTGCTGGTTTTGTGAAATAGCATGTGAGGCTTTG
AAAAAGATGGTTAAATCCGAGCAACACATAAGAAAAAAAAGCTGTATTAT
GCAGTTTGATATCTGCTTGCCATATTTTATTTGTAATCTTGCCGTTGAGT
GCCATAGTTTGCTGATACTGCTAACAATCATTAATGAAGATGTGTTTTCA
AGTACTTGCGCGAAGTCTGTTTATAGTTACAACAACTTATCTCATACTAC
TATTCCTTGTTTTCTTCAGCATTATTCCAGAGCGACATTCTCAGCCTGCA
GCATTTAGGCTATACATGGAACTTCTCAAGAGGCATGCCTTCACTCTCAT
ATCGCAATTGAAGTGGCCGAATAGCCATATGTAAGTAATCATCATAACTG
TGTTTCTTATGCTTAAAACATCATTAGCAACAGGTAGCATGTATGGTGAT
GGAAGTGCTTATAATGATTTTAACTTGAATTGTATTAAGATACATCATAT
TATACACTCTTATATCTTTGAATTAGCCTGGTATCTGTATCACTCAGAAT
CGTTAAATCCAGGTATGTAAGCAAAGCTAAATATACAGAGGCACTTCACA
TTTTCTCTACAAAATTAGTATTGATCACGAATCTAAATCAAATTCTATTT
TATATAATGGATTATGTATGAAACCGAAAAAAAGGGTAGGGATGCTTAAT
CACTTTTGGACTTACATCAAGAACTTATGCTCAAGAGACAAAGATATTCA
TTCCTTAGACTATGTAATCTAGGGAATATCTTTGTGAACCTAATTAGAAT
ATGCACACGAACATGGGCAAGTACGTGATTGTCATACCTGTTTTCACTTG
AAAAGGCCTGAGCATGTTTTGAATGCAATACTTTACAACACCAGACCTTT
GTTCTATGCACCAATAGTCTAACGAGGTGAGCAGCGCATCACTTAGACAT
TCATAGAAATTCTTTTTGTCAGATTTGTTTCCTTGTGAGTACTACACTCG
CTTAGTTATGACTATAATCTGTGGTTTTGTTCTATTTGATATATTTTGAT
CCACGTGACATTGATGCAATGTGCCTATTTATACTCCACCTTACCTCCTT
GTGGATATGCCTACTTATTGAAGTATATGTACCTATTTTGGAGTTTAAGG
TATTAGTTTTTCTTGTCCAGTATGACTTTCAATAAAGATTTTTCTGTTTG
CAGTTCTGTTTATAGTTTAAAAAATTTCTCACACTTTCAGGATCATCAAT
TCTGTTGACAAAGTTCTCCAGCTTTCTGAATTATTTGGTGTCCCAGCCGG
TGAACCTGGTATTCTTGTAGTAGAATTTATTTTTTCAATTGCGTGGCAGT
TACTAGATGCCGCACTGGATGATGAAGGGTTGCTGGAACTTGCACCAAAG
AAAAAATTCGGATGGATATTCAAACCTGAGAATATGGATATAGATGGTCA
AGGTAATTATAATGAGAAGAGGACCACCCATCAGGAGAGATTGAAGAGTG
TTAATACTGTGATGGCCATAGAGTTATTTGGTCAATTTCTGCAAAACAAA
GCTACTTTTGGAATGCTTCATTTGGCACGCAGAAACATGTACATATTTCT
TTCGTTTTCCAACTTCTTGCAGTTTTCTGTTGCTATGAAGTATTGATCAT
TAAAAATTAATTTGGTCAACTTGATGCATGAAATTAATAGAGAACACTTA
CCCTATCACCTGTCATCTTCAAAGCTTTTGAGATGGCTCTATAGGAATGT
AGGAATCACGTAACTATTTAATATTTTTAGGGCATCTTTGTTTTACATTA
TAAGCTAAATTACTGATAAATTCTATTGACTGTTTGTTTGATAAGTAAAA
GATACTTATGTGTTAATGTTTGACTTGTAAGTTAAATTTTGAGATGTACA
AAATGTGTACTTCAGTAATATTTTATTTTACAATTGACTTCATATCAATG
AACACTTAAAATTTTATAGGTAACTTCTAGCACTTCTTCTTTACTTAGAA
GTTCTTTTGACTTTTATTTATTAGTATTACTTCCATGATCTACATATTAC
TAATAAAAAATATTCAAGCTAATAGTAGCATAAAAGACAATAAAATATGC
ATTTTACTTGTAAGTAATAGCAGTAAATTTAAGTGAATATTACTTTTTAT
AAACCAAATGGGCCCTTAATATTACCGTGATCCTGATCATTGCTTGCAAC
TCTGTAAGGCCTGCACATTGGAGAGATTTCATCGAGCATGTACAGTTGCT
TATAGTTAATTCATCAGCCTTGAGAAATTCAAAAGTTATGACGCCGGAGC
TTCTTGTCCAATTGATATCAGCTACTCGCAAAGTCATGTCCCGAGAATGT
AAAACAAGTTATCTTCAGGAGTTCCAAGAGATACTCGCGTGTGATCCTCT
GGCTTCTTCTGCAGGTCTCTGTCATGGAACTAGTCGTTCTGCAATTTGGC
TACCTCTTGATTTAGTTCTAGAAGATGCAATGGATGCTTCACAAGTCAAT
GCAACTAGTGCCATTGAGATTGTTACTGGTAAAATCTACTTTACTGTTAA
TCAATGAAAGAAGCAAAAGATGGTATTATTCATTCATAAGAAAATTTAAA
ACTACCAACATATTGGATTCGTATATGTCAGGTTCTGTAAAGGCTCTTCA
AGCAATGAGTGGTAGCACTTGGTATGACTGTTTCTTAGGTCTTTGGATGG
CAGCTTTACGCCTTGTTCAAAGGGTTTGGTTTTTCTAACTTATCATTTTC
TTAAAATTTATAAACAAATTTTGATTGATTTTGTTCCAATCTTATTTCTT
CATCAATGTTGTAGGAAAGAGATCCCATTGAGGGGCCTGTGCCACACCTC
GTCACTCGCTTGAGCATGTTGTTGTCTATTGCAACTCTCGTCATAGTTAA
TCTCATTAAAGAAGAGGAAATTGCTTTAACTGCAGAGGCAGAAGTCCACA
ATGAAAAACACAGTAAAGAACGTGTTCCTGGAAAGCGGCGTAGAGACTTG
GTTACTTGCTTGCAGAAGTTGGGGGATTTTAAGACTCTGTTGACTCCACC
TGAATCAGTTATCCCTGCAGCCAATCAGGCTGCAGCAAAAGCAATGATGT
TTATAGCAACCATCAATGCTGGCAATGCGTACTCTGACTGTGCCAGCATA
AAAGACACGTCTATTAAATGTTGTAAGTGGTATCTTTCGTAACTCATGTA
CGATCACTAATATCTGATGTTTCAGTTTCCAGAATATATTCACATGTGAG
TTTTTTTTATGTCTGGCGCCTGTAGTGCATATGCCACCGTAGATGTTTAC
ACTAAGGGGGCTTTTGGATGGTAGATTGAAATGGGAATCAAGAATGGGAA
TGCAGGTATGAGAATGGGTATCCCAAGGGGTGGGGAATGAATTACCCACC
AAGTGGGAATGGGGTTCCCATTCCCCACAACAAAATTGCTAATCCAAACA
CCAACACATGGGTTTGAGGTTTTGATTCCTGTTAACCGGGCTCATTAATC
ATGAACGAAACGTCCCCTAAGTGAATGAATTTTCTTAGCGTGACTTATCT
TTCAAATGACAAAATCTTTAGGTAGATCGATATTGCCTAGTTAAGATCTT
TACCTGGGTTAATGGGCATATGCATATAAAATGAGTAACAAAAGGTGTTG
GAAACGGACCTGATATTAGATGTATTGAACCCATTTTATGAAACAGGCGA
GTTAACATCTGTAGTATCACCACCCATAACTGTCTTAGGGTTCATACATG
AGCACTTCAATGAGACAAGAACAGAAACAAAAGATAAAGGTCGACCTATT
GGACAATTGTCTCTTCACACTTAATTCTTCATGTGCCTAATTATTTAAGG
AGGTAATTTATTGTAAAAGCAAAAGTAGATTTATTTTCATAGAACTTGAA
CTTCCCTCGAATTCTGTGCATAGAACTTGAAATTCCCTCGAATTCTTAAT
CTTTATTGATAATGTCTAAACTGACTAGCATATATTTTTATTTGCAGCTG
GAAACTTGCACCATTTGATTATTGAGGCTTGTATCGCACGAAAACTACTA
GACACGTCAGTGTACTTTTGGCCAGGTTATGTGAACGGACTTACAGACCA
AATATCTCATAATGTGCCTGTCCAAGTTCCTGGTTGGTCATCATTCATGA
AGGGGGGTCAACTAACTCCAGTAGTAATTAATGCTTTAGTTTCATCTCCG
GCTTCAAGGTATACACAAGGCCCTTAGGGTATCCATTTTTGTAATTGTCA
TAGAGTAATCTTCTACACCAGTCATCTGATCAATGTTACACTCTTCTATG
TCAAAGCCGATATTACTACTAAGGTCCTATATAACATTTGAATCTACGTA
CGTTACTCTAACACAGACTTTTCTGACAATAAATCTAAAAATTCATTGAT
GTTGAGCAATTTGATTCAGTGTCGGAACATTTCAAAACTAAGCTTTACTT
TCAGTTTTTTTTAAGTACCTGTGCCCCCCTGCTTGTCACCCAACTAATCT
ACTATAAATAAGAATGGTGAAGTGACATATATCTATATACTAATGTTTTG
GAAAGCTTCAAGTTATGGGTCCATGGACCTTTTCAAGTTTTAACCTTCCA
TGGTAATAGAGAAATACTGGTCATTAACATCTAACTGGTTGAGTGGAGGT
CCTTCGCAGATTCTTCAAGCGAAAATATTTTATTTTTGTAAACTAGTTTT
ATCAATTACTAAATATGTACCACCAACTCCTTTAGCCCTTAGATCTGTAT
GTATTACATTACACATGTTGGAACTTTATGAAGTCTTTATTATTACTATA
ACATATTTTAGCTACTTTTTTGGTGTTTAGTTGATTACTGTGCCTCTTAA
CCATGTTTAAAACACCAACTGAAGCAATGTGTATATCTATTTTCATATTT
GGACTTGGACATGAAAGCTTTAAAGATCAATGACATTATAGTATTCACAG
CAAGCGCCAGTTGTTTAACTGTAGAATGTCTCAACAAATTTCTATATTTT
GATCCCATTCACAACGTCACTATTAAAACACGAATAGAAAACGGTGTATA
TATTCATAGGTTCGATACAAAGGATGGATATGTGAAAATCATTTATGTAA
ATTATTTACTCTATATTTAAATATGGAGACAGTTTCTGCCTTCGCATATG
ATGCTAATAAACCTATAAATATTTAATAGTTTCCCCCTGCCTCCCTATGT
AAGAAAGTACAATGGAAAATATTTTTACTAATATATCCTTGTCCATAGCC
AGGTCTTCAGTTATACGTTTTTTTTTCCTGCTGTTGGCTATATCAGATGC
TCTCATTTATTGATTAGACAAGGTTAAGCAACTGAAATTTAAGCTCATAA
ATTTGATGGAAGCTTCGCAGAACTTGATAAAATCTTTGAGATTGCCGTTC
AAGGATCAGATGATGACAAGACAACAGCTGCTACTATCCTTTGTGGTGCT
TCTTTAAATTGTGGTTGGAATGTTCAGGTAGTCTACACTGAAGCATTTGT
AATAGGATCATCCACATAAAATAAAACAAGTCATTAATTTCTTGGACATG
CATGCTTTACTAGGTCAACGAAGCCAACATCATTATCTTCTCTTTATTTA
GCCATGTTGAAGTGCAGATATGGTAACTGTAGTATATTTTGACATTTTCA
GGAACACACTGTTTATTTCATAACAAGATTGTTGTGTCTTCCTGTTCCTG
CTGATTATTCTGGTACTGACAGCCATCTGATAAGATATGCTCCAATGTTG
AATGTCCTTCTTGTGGGTATAGCAACAGTTGACTGTGTTCAGATATTCTC
TTTGCATGGCTTGGTATGTGAAGCTTATACTGGTGTACACATATGTATAT
TTATAATAAATATGCTCAGTAGTGTTCTGAAAATTTCTGTCTCACTAGCA
CAAACTCTAATTTATTGATCTTACTTTTAGGTTCCACAACTTGCTGGTGC
GCTGATGCCAATCTGTGAAGTATTTGGGTCATGTGTGCCAAATGTTTCAT
GGACTTCAGCAACAGGAGAAGAGATTTCTGCCCATGCAGTATTCTCAAAT
GCATTTGCACTTCTTCTAATGCTATGGAGATTTAATCATCCACCTCTAGA
ACATGGAGTAGGCGAGGTACCGCCAGTAGGAACCCAGCTTACTCCTGAGT
ACCTCTTACAAGTAAGAAATTCCCAGTTAGTATGCAATGAAAATGTTTAC
TGGGACCAAAATAGGCGGAGACTTGCTGCTGATGCAAATTCGTCATTATC
TGAACCCATATTCGTTGATACCTTTCCAAAATTAAAAGTATGGTACCGTC
AGCATTTGGCATGCATCGCTTCACCACTCTCTGGCCTTGTTCATGGAACT
CCTGTTCATCAGATTGTAAATGACCTTCTTACTATGATGTTCAAGAAGAT
TATAAATAATGGAAACCAGACTATGACATCCGCAATATCTGGTAGTACTG
CCTCATCTGAAATAGGTAAAGAAACAGGCTCAAGGCCTATGTTAGCAGGT
TGGGATATTCTTGAAGCTGTTCCTTTTGTTGTTGATGCTGCTTTAACAGC
ATGCGCGCATGGAAGACTTTCCCCTCGTGAACTGTGTACAGGTTAGTCTC
TGATATGAGTATTTGATCTATTGTTTTATTAGCTGCAAGTACATTGAGTT
TTACCAACATTTGAGGTTTTCTTATGGATTCTTGTCAGTTTCACACATGC
TAGAAAGTAAATTCTCCTTGCTTGCATTCAAAAATTCACTCCACTCAACT
GCTGAACTCTCATTTATTGAATCATGACAATTTTGTCTGAACCCAACTTG
TTTGCAGTCACCAATCTGTGATCCTTTTGCAATACTCTTGGTACATTTGA
TTTAACACAAAGGGTTTTGCTGCAGTTTCTGGAAACCTTAGACAGAATTT
GAAGTTGATGATTACAAAAATTTCTTCATTCTGTGGCAGGGCTTAAAGAT
TTAGCTGATTTTCTTCCTGCATCCTTAGCATCCATCGTAAGTTACTTTTC
GGCGGAAGTAAGTCGTGGTGTATGGAAACCAGTATTTATGAATGGAGTAG
ATTGGCCAAGTCCGGCTGCAAATCTGGCAAATGTTGAAGAACAAATTAAG
AAGATCCTAGCTGCTACTGGTGTAGATGTGCCAAGCCTTGTTGCAGGTTA
CCTTCCTCAAACCACAAATTATTACCAAAAAACCTTTTAGTAAAAAGGAC
CATCAGTCTATCACACAAGTTATAGAACATCGAGTTGGGTCTTGATACTA
GATCACATTTTAAAACTTTTGACAGTCTTGGTTGCAGGATTAGGAAGTTT
TTATCTATAAATAGATAAATAGATAGTTCAATCAATGTCAACACTTGTGC
CATGTTTGGGGTGGAATAGAATGGATGTGGTAATGGAATAAATAATTTGG
AAAAAAATAGAGCGCAAAAAGAAGGATGCAGGGCTTAAACTGAAAAGTGT
GATAGCAGTGGTTACAGTTTACTAGAAGATCTGAGGAGAAGAAAAAAGTA
ATTAAATTATGTGACCATTTAGTTGGAGGAATTAAACTTTATATATTTTG
TGTACTTATCCAGCTGTGAATACCTTATATATAGTAAGCAATGGTAACTT
GGTCTACCTACAGGCTACAACGAATGTTACAAATTTCTATTTTCTGTTTT
TCTGAGGCCGGCTATTCTAAGATTATGGATTACAACTTTTTCCTTGCAGG
GGGGAGTTCACCGGCAACGCTTCCACTGCCTTTGGCTGCCTTTGTAAGCC
TTACAATAACTTACAAACTAGACAAAGACTCACAGCGGTTCCTCAATCTG
GCTGGTCCGGCCTTGGAGTCCCTTGCAGCCGGTTGCCCATGGCCATGCAT
GCCAATTGTGGCATCCTTGTGGACCCAAAAGGCAAAACGCTGGAGTGATT
TTCTCATCTTCTCTGCTTCACGTACTGTCTTTCTCCATGACAATGGTGCA
GTAATTCAGCTTCTTAAGAGTTGCTTTACTGCTGCACTTGGGCTGAAAAG
CAGCCTTACTTCAAGCAGTGGAGGCGTTGGACCGTTACTTGGGCATGGAT
TTGAATCCCAATCTCATGGTGAGTTATCCCCAGTTGCCCCTGGGATTTTA
TACTTGCGCTCGTATAGGTCCATCAGAGATATAATTTTCATGAGAGAAGA
AATTATTTCTCTATTAATGCAGTCTGTAAAAGATATAGTTTGCAATGGGT
TTCGAAGAGAACGAATAGCGAAGCTGAAGAAAGCCAAAAATGGAATGAAG
TATGGGCAGGTTTCACTTGCTACTGTTATGACAAAGGTTAAATTAGCTGC
ATCACTGGCAGCTACTCTAGCATGGTTTGGGGGCATTCAGTTGGTTCAGT
CATTAATAAAAGAAACTCTACCATCATGGTTTATATCTGTTCATAGATCT
CAGCATGAAGATGATGCAGGAGGCGCAGTTGCAATGCTTGGCGGATATGC
ATTAGCACATTTTGCTTTGCTATGTGGAGCTCTCGCTTGGGGTGTGGACA
CATCCTCGTCAGCATCAAAGCGCCGGCCTAAAATTTTAGGCTATCACATG
GAATTTCTTGCAAGTGCTCTGGACGGGAAAATATCACTCGGTTGTGATCC
AGCCACTTGGCGTGCATATGTGTCGGGTTTTTCGAGTCTGATGGTAGGAT
GCACACCAAATTGGTTGTCAGAGCTAGATGTACAAGTGTTGAAAAGGATC
AGCAAGGGGCTTATGCATTGGAATGAGGAACTTGCTCTTTCTTTGCTAGC
AGCAGGTGGCGTTGGTACAATGGGAGCAGCTGCTGAACTGATCGGCCAAA
GTAGTCTATAG

Sequence Length:

9411

Sequence Checksum:

e3432292b1bb3a38492a9eda285dcd97

View location in JBrowse:

DCARv2_Chr7:16413363..16422773+

Cds:

>DCAR_024573cds ATGGCTATAACATCATGTCAAATAAACTGGGACAATGTCCTTGAATTTAC AAAGATTGCACAACACAAGGGTGATGATCCTATGTTGTGGGCCATACAGC TCTCTTCTAATCTTAACTCTGCTGGGGTTTCTTTGCCCTCACCTCAGCTC GCCACCCTTTTGGTCTCGCACATTTGTTGGGATAATAATGTCCCCGTTGC TTGGAAATTTCTTGAAAAAGCTCTGGTTTTTAATATTGTGCCTCCTATTC TTGTTCTTGCTTTGCTCTCCAAAAGCATTATTCCAGAGCGACATTCTCAG CCTGCAGCATTTAGGCTATACATGGAACTTCTCAAGAGGCATGCCTTCAC TCTCATATCGCAATTGAAGTGGCCGAATAGCCATATGATCATCAATTCTG TTGACAAAGTTCTCCAGCTTTCTGAATTATTTGGTGTCCCAGCCGGTGAA CCTGGTATTCTTGTAGTAGAATTTATTTTTTCAATTGCGTGGCAGTTACT AGATGCCGCACTGGATGATGAAGGGTTGCTGGAACTTGCACCAAAGAAAA AATTCGGATGGATATTCAAACCTGAGAATATGGATATAGATGGTCAAGGT AATTATAATGAGAAGAGGACCACCCATCAGGAGAGATTGAAGAGTGTTAA TACTGTGATGGCCATAGAGTTATTTGGTCAATTTCTGCAAAACAAAGCTA CTTTTGGAATGCTTCATTTGGCACGCAGAAACATGCCTGCACATTGGAGA GATTTCATCGAGCATGTACAGTTGCTTATAGTTAATTCATCAGCCTTGAG AAATTCAAAAGTTATGACGCCGGAGCTTCTTGTCCAATTGATATCAGCTA CTCGCAAAGTCATGTCCCGAGAATGTAAAACAAGTTATCTTCAGGAGTTC CAAGAGATACTCGCGTGTGATCCTCTGGCTTCTTCTGCAGGTCTCTGTCA TGGAACTAGTCGTTCTGCAATTTGGCTACCTCTTGATTTAGTTCTAGAAG ATGCAATGGATGCTTCACAAGTCAATGCAACTAGTGCCATTGAGATTGTT ACTGGTTCTGTAAAGGCTCTTCAAGCAATGAGTGGTAGCACTTGGTATGA CTGTTTCTTAGGTCTTTGGATGGCAGCTTTACGCCTTGTTCAAAGGGAAA GAGATCCCATTGAGGGGCCTGTGCCACACCTCGTCACTCGCTTGAGCATG TTGTTGTCTATTGCAACTCTCGTCATAGTTAATCTCATTAAAGAAGAGGA AATTGCTTTAACTGCAGAGGCAGAAGTCCACAATGAAAAACACAGTAAAG AACGTGTTCCTGGAAAGCGGCGTAGAGACTTGGTTACTTGCTTGCAGAAG TTGGGGGATTTTAAGACTCTGTTGACTCCACCTGAATCAGTTATCCCTGC AGCCAATCAGGCTGCAGCAAAAGCAATGATGTTTATAGCAACCATCAATG CTGGCAATGCGTACTCTGACTGTGCCAGCATAAAAGACACGTCTATTAAA TGTTCTGGAAACTTGCACCATTTGATTATTGAGGCTTGTATCGCACGAAA ACTACTAGACACGTCAGTGTACTTTTGGCCAGGTTATGTGAACGGACTTA CAGACCAAATATCTCATAATGTGCCTGTCCAAGTTCCTGGTTGGTCATCA TTCATGAAGGGGGGTCAACTAACTCCAGTAGTAATTAATGCTTTAGTTTC ATCTCCGGCTTCAAGCTTCGCAGAACTTGATAAAATCTTTGAGATTGCCG TTCAAGGATCAGATGATGACAAGACAACAGCTGCTACTATCCTTTGTGGT GCTTCTTTAAATTGTGGTTGGAATGTTCAGGAACACACTGTTTATTTCAT AACAAGATTGTTGTGTCTTCCTGTTCCTGCTGATTATTCTGGTACTGACA GCCATCTGATAAGATATGCTCCAATGTTGAATGTCCTTCTTGTGGGTATA GCAACAGTTGACTGTGTTCAGATATTCTCTTTGCATGGCTTGGTTCCACA ACTTGCTGGTGCGCTGATGCCAATCTGTGAAGTATTTGGGTCATGTGTGC CAAATGTTTCATGGACTTCAGCAACAGGAGAAGAGATTTCTGCCCATGCA GTATTCTCAAATGCATTTGCACTTCTTCTAATGCTATGGAGATTTAATCA TCCACCTCTAGAACATGGAGTAGGCGAGGTACCGCCAGTAGGAACCCAGC TTACTCCTGAGTACCTCTTACAAGTAAGAAATTCCCAGTTAGTATGCAAT GAAAATGTTTACTGGGACCAAAATAGGCGGAGACTTGCTGCTGATGCAAA TTCGTCATTATCTGAACCCATATTCGTTGATACCTTTCCAAAATTAAAAG TATGGTACCGTCAGCATTTGGCATGCATCGCTTCACCACTCTCTGGCCTT GTTCATGGAACTCCTGTTCATCAGATTGTAAATGACCTTCTTACTATGAT GTTCAAGAAGATTATAAATAATGGAAACCAGACTATGACATCCGCAATAT CTGGTAGTACTGCCTCATCTGAAATAGGTAAAGAAACAGGCTCAAGGCCT ATGTTAGCAGGTTGGGATATTCTTGAAGCTGTTCCTTTTGTTGTTGATGC TGCTTTAACAGCATGCGCGCATGGAAGACTTTCCCCTCGTGAACTGTGTA CAGGGCTTAAAGATTTAGCTGATTTTCTTCCTGCATCCTTAGCATCCATC GTAAGTTACTTTTCGGCGGAAGTAAGTCGTGGTGTATGGAAACCAGTATT TATGAATGGAGTAGATTGGCCAAGTCCGGCTGCAAATCTGGCAAATGTTG AAGAACAAATTAAGAAGATCCTAGCTGCTACTGGTGTAGATGTGCCAAGC CTTGTTGCAGGGGGGAGTTCACCGGCAACGCTTCCACTGCCTTTGGCTGC CTTTGTAAGCCTTACAATAACTTACAAACTAGACAAAGACTCACAGCGGT TCCTCAATCTGGCTGGTCCGGCCTTGGAGTCCCTTGCAGCCGGTTGCCCA TGGCCATGCATGCCAATTGTGGCATCCTTGTGGACCCAAAAGGCAAAACG CTGGAGTGATTTTCTCATCTTCTCTGCTTCACGTACTGTCTTTCTCCATG ACAATGGTGCAGTAATTCAGCTTCTTAAGAGTTGCTTTACTGCTGCACTT GGGCTGAAAAGCAGCCTTACTTCAAGCAGTGGAGGCGTTGGACCGTTACT TGGGCATGGATTTGAATCCCAATCTCATGGTGAGTTATCCCCAGTTGCCC CTGGGATTTTATACTTGCGCTCGTATAGGTCCATCAGAGATATAATTTTC ATGAGAGAAGAAATTATTTCTCTATTAATGCAGTCTGTAAAAGATATAGT TTGCAATGGGTTTCGAAGAGAACGAATAGCGAAGCTGAAGAAAGCCAAAA ATGGAATGAAGTATGGGCAGGTTTCACTTGCTACTGTTATGACAAAGGTT AAATTAGCTGCATCACTGGCAGCTACTCTAGCATGGTTTGGGGGCATTCA GTTGGTTCAGTCATTAATAAAAGAAACTCTACCATCATGGTTTATATCTG TTCATAGATCTCAGCATGAAGATGATGCAGGAGGCGCAGTTGCAATGCTT GGCGGATATGCATTAGCACATTTTGCTTTGCTATGTGGAGCTCTCGCTTG GGGTGTGGACACATCCTCGTCAGCATCAAAGCGCCGGCCTAAAATTTTAG GCTATCACATGGAATTTCTTGCAAGTGCTCTGGACGGGAAAATATCACTC GGTTGTGATCCAGCCACTTGGCGTGCATATGTGTCGGGTTTTTCGAGTCT GATGGTAGGATGCACACCAAATTGGTTGTCAGAGCTAGATGTACAAGTGT TGAAAAGGATCAGCAAGGGGCTTATGCATTGGAATGAGGAACTTGCTCTT TCTTTGCTAGCAGCAGGTGGCGTTGGTACAATGGGAGCAGCTGCTGAACT GATCGGCCAAAGTAGTCTATAG

Pep:

>DCAR_024573pep MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQL ATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQ PAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGE PGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQG NYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWR DFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEF QEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIV TGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSM LLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKERVPGKRRRDLVTCLQK LGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIK CSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSS FMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCG ASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGI ATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHA VFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCN ENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGL VHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRP MLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASI VSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPS LVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCP WPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAAL GLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIF MREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKV KLAASLAATLAWFGGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAML GGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISL GCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWNEELAL SLLAAGGVGTMGAAAELIGQSSL*