Resource Type:
Gene
Organism:
Name:
DCAR_024633
Identifier:
DCAR_024633.gene
Locus Tag:
DCAR_024633
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_024633, is a part of gene, DCAR_024633. |
| The genetic_marker, MK002230 ESSR-125, is located in gene, DCAR_024633. |
| The genetic_marker, MK010119 7_17426452, is located in gene, DCAR_024633. |
| The genetic_marker, MK002714 K0158, is located in gene, DCAR_024633. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_024633 | DCAR_024633.mRNA | mRNA | DCARv2_Chr7:17413680..17428060 |
Sequence:
ATGAATGTAGGATCCACAGTGCCATCTGAGTTCATGGACCTCTATGCTTT
GCCTCCGTCATCATATTTTTCTGAGGTAATGTGTTATCCTAATGATGTAC
TGCTTGTCTGTGTATTCATCTCGTTTAGATAGGAGTTCCTCTTTTATAAT
GTCTTGTGGTGGCTTATTTTTTTCTTTTTCTACCCTTGGCAGCGACAAGT
TGGCTTCTGGAAGACGGATAGCATGCCTGAAAGCTACGGTCTGTTATGAT
ATTACACATTAGACCATAATAGTTCCCATCTTAACATCTATTTTCAATAT
AAACTTGGTGTCAACTGAAATATATGCTATAACATTCTTGAACTATGTTA
CCCGGACTCGGCTAAAAGTGTCCAACATGGATACGTGTCCGAGTGTCGGA
CTTGGCAATATTATGAAATTTTTCATGTTTTTGGCCTAAAATAAGTGTCT
GAGTATCCATACCCATGTCCAAGTGTCGAGTATCCAACACAAGTACTCGA
GACAAAATAAAGAGTATATAGTTCTTGAACGTTGGATGAGATTGATAGCA
GCAAGTACTTTATATAATCCATCTGTAGCATTGATTTATATTATCAAATT
TATGGTTCTGGAAATGTCAATAGATGTTGGAAACAGTTACTATTTTTTTT
AAAATAAAAATTAGAGCGGAAATAAGGTCTTTTCTTAAAAACTGAAGAGA
GGCAGGGGGGGGAAAGACTACTCACACATTTAATTGTATCATTTCTTCAA
ATATGGGAGTGCTGATGAGACAGGTTTTTCCTTAAAGTGACACCCACTTT
GGTAACATATCCAAAGGCATTACAATTGTTGGGGGCGTACATATAGTGTA
GTTGCATATTCAAACATTTGTATAAAATAAAGATCTAGAAGTCAATTTTG
CATAACATTTGATTAGATTCTAACTGTAATCTTTTGGTCTGCAATAATAC
AACAACACAGTATTGCATTATGAGTATGTCTTCCGGTGCAAGTATAGTTT
TGGGTTTTGCTGGGTGAACAATTTATGGTCTGAAGTGCACTTGCGTTTTT
CCTTTTCAGTAAATTTTTCAAATATAGCAACATTTGTAATCAGTTTCTTG
TGCATGAAAAACTGCATTAATTTGGCTTCGCTAGTAATATTTTTTGTTCT
CTCTTGATATTTTGACCATTGTTATTCTTACTGAAATGTTAGTTTCATCA
GGCTTAAAAGGAGAAGGAATGTCACAAGCAGCAGGGAAAAATCTATTTGC
TTCATCACCACTGGACTATCGAATGTTTGCGGATTCTTCTTTGGGTAAAT
ACATTGATATTCCCAGAATCCACCTAGTCTAAAACCTGCAAACTAACATG
AGCATTTAATCAGATTGGAGAGAGTACCCAAACTTCTTGACCATCATTGA
GGATCAATACTTAAATAAAATAACAATCCAGTCTTGTAATTTACAGATGG
GAAGAAGGCTAATATGATCTGTACTTGTTATGAAAATGGGCTCTTTTGAG
CCCACTGTCACAGTTATTGAGTCAAAAGAGTGAGTCTCGAAAACTAGATC
AATGCTTAACTACATATGTTCATATACTGGTGAAATCTGTTATATAATCT
CTCTTAAACATTCTTTCTACCCTCAATATCATGGATCTTCAGTCTGTTAT
ATATAGCTGTTGATGCTATGTTATCAGATGCAATCAGATACTGAAACACT
GATTTATCTTCTCCTACTGCACACGATAATAATTTCTCAGACTCTTATGC
CTGGTAATCAATGCAGTGACATTGTCACCCAGTGATGCTCTACACGGCCA
TTTTGTTCCTGCTACTTCCGAGTACGAAGAAGAGGAACCATTTGAGTCAC
CAGAAGAAATTGAAGCCCAAACCATTGGGAATCTTCTTCCTAATGACGAT
GAATTGCTTCTGGGGGTGACCGATGGTTTTGACTATATCACTCGACCTGG
TAATGGAGATGATATAGAAGATTTGGACTTCTTCAGTAGTGGTGGAGGGT
TGGACTTGGGAGAAAAACAAATAAGTTGTGACATTTCAACTGCCAGGTTG
GGGGGATCAAGTAATTCTATTGCTGAGGAAAACCCATCTAGAACACTATT
CGTGAGAAATATTAATATCAATGTTGAAGATATTGAATTGCGAGCTGTTT
TTGGTGTATGTTGCTTTTTGTGACCAGAATTCCTTTATGTGCCTTATAGT
TAATGGTAAATTGTGATATTGATGAGGGTTCACCTGACCTGTTTGTTCAA
ATTCAATTACAGCAATATGGAGACATTCGCAGTCTCTATACAGCTTGCAA
ACATCGAGGCTTTGTTATGATATCATATTATGATCTACGAGCAGCCCAAA
ATGCTATGAACGCACTTCAAAACAAGCCACTGATGCATAAAAAGCTTGAC
ATACATTTCTCGATTCCAAAGGTATATTTTGCTACTTGCATTTCCCCCAC
TTAACAAACTTGTAAATTATAAATTTTAGCATATGCTACTTCCAAGTCCC
CTACTTCTTTCCCTTACAGCAGTTCAAAGATCTATCTAATACAGTCAAAA
AATCAGTTAGGTAATGAACTAAACCGGTTAGAGGCTGTAGACATTTATAT
TAGTCATGATTCATATTTTTCAGAGGGGGTATTATTTTATTATAATCACT
GCAGTCCAAAGTTTTTGATAAACTTAAACAAACAACCTGCCCCTTTTCTT
TTCTTTCTGACCCGGAACACCACCAAAGACTTATCATACTAGGATTGCTG
GTTTTTCGTCTTCTCAAACGTAATGAATCTTATATGAGAAAATCTTGAGA
ATCTTGATAGTATCTCCAGATGATGGTCTGCACTATTTGCAAGTGCTTCC
AGTTGCTAGATTTATTCAAGCAAGTCACAGCACTAGAAATGACTTCTTTG
ACCATCTGTTGCATCGTTTGCCATCTTAAAAGATTGTCTGCCGAACTTAT
TGTCGAGTTTGTAGTTCATGCTAACGAAGTCAACTTGGGTACTGTCAGAC
AATAGTGAATTTTGTCTACTTACTAAGCATGACATTCTGCATCTGCAATT
TCTATTAAAAGTTCGATTTGAGTACACAGTAATTGCTTGGCTCCGCAATC
ATACACTAAATAGTCTGCCTTTCTAGGAAAGAAACAATTAGTCATCCAGC
ATGGATGGATACAGAAATTGATACCTTGTCCGAAATATTTTGCACCGAAG
GCGGCTTGTCACTTTTGCACTTTTTAACAATTTTTGCACTTAAATGCTGG
TATGGTTTGTAAATGTATTTAAGATGAAAAGCTGATTCTGACAATTGTGC
AATTGTTTTTTCCCTATTGAAAGGGCAACCCTTCTGAGGAAGATAGCAAT
CAAGGTACCCTTGCAATTTCTAAGCTTGATTTTGCTGTGACAAATGATGA
ACTCCGAAAACTGTTTAGTGTATATGGAGACATCAAGGAGGTAATATTCC
ACGCTCTATAGACTTTAAAAAAAATGCATTTAGTATGTTAGGAAATTTGC
TAATCGCTTCTGTAGTGCAGATTCGTGATGTTCCTCATAGGTGTCATCAC
AAATTAATAGATTTCTATGATGTTAGAGCCGCTGAGGCTGCTCATCATGC
ATTAAGCAGAAGAGAATTAGCAGGGAAGCCTGAACTAACACATCCTGATG
GTAATACGCGGTAAGATTGTAAAGTATAAATTGTTTTTCAATCTTTCTTT
GTCCTGCACTTGAAAGAAATCAAAGTAGAACACCTAAAACCAAGACTGGA
ATAATTCTAGACACAGATTTTATATTACTTGAAAGTTGAACCCTTGACCT
CTTACTACCGAGAAGAGAGGGGTATGTGCTAGGCTAAGCTTTGTAAAAAA
TCCTAAATTATTTCCATCGACCTTAAGGACTTTCTCTGGCTCTTCTTCAT
TTTCCTTCATATGAATTAATTCTCTTTCTTATACTGCTAAATTTTGTTTC
CTTTTTTCGTGACCCATGCGTTTGTTTCCAGTTTTATGCAGTCATTTCGT
GAGCTCGAGCAAGATTATATCAGTCCATATCTGCAACAAAGTAGTTCCTT
TGATGTGAATACAGGTTTTGGTAGTATAAGTACTTTCATGATGTATACTT
CTCCTAATCAAGCAATTCAAAGATTGTCTGACATCATTCCGTGATTGCTT
ACAGGACTAGCTTCACATGGGCAAATAACATCTTTTAGTATGGAGAACAG
CAATAGACTGGGTGTTAACTATTCAACGGGATCCCCGGTTAGTCAATACC
AAGATATTGCATTTCAACATGGGGTATCGTCCAGTGTTCCAAGCAACTTA
CCCTCTGCTATCAGAGCGGAATTACTCGGACTACAGTCCAGCATTACTGA
CTCTGGTCACTTGTTGAGCAAGAGAAGCTTAGAAATTCCAAGTGCACCAA
TTTTCCATCCACATTCCCTTCCAGACCACCCTGATGAATCTGGTAATCCT
ACTGCCTACAGTTTTCCAGGATCAATGGCTTTAAATGTTAGTGTTGAGTA
ATCAAAACAATAAGAGTACCTGCAGTTCTGTAAAGTGGCAAAAAGGGAAA
GGTTGTACACTGTCTTCCCGAGTTCGGTAAAGAAAAGAATGAAAAATTGA
TTATTATCTTTGATCTCTATATCTTTTCAGAATTGGGAAGAAAATTTTAT
GGAGAAATATATAACAAGTTTCCTTCTAAATCTTTAGATTTTCTTTCCCT
TTCTTCTAAAAACTCACTCACAAACAAGTAAAAGAAGTTAAAATTTTCTC
TTTCTTTTATTTTGTCTCATAAAAAAAAAACTCTTAAACACAGTGGCAGT
GTTGGACTGAATGAGGATTGTTAGCAAAGGTATATAGAGCCAGCATGCAT
GTAAAGTTTTGCTGTCCATTGACTGGTTAAACTATATACTGATAGTCTGA
TATCAAAAGACTTATACAGCTTTTAGAGAAATTCAAAACTAATGCTATCA
AGAACTCTTTGTATTGATATTCTGATTTCACTCATATGTGTTTTTATTTT
CAGTAGTTTTTTCATCTACTGGAAGTGAGAGCTATGTCCCTCCTCTACCA
CATCATTATATGTGGAATAATTCATCTATGCTTCACAGCGTTGGGTTCGG
CAATAATGATATCTCCCAACATATGTGGTCCAATTCCCCATCAAATCTTA
ATGGGATCTTTTCTCCTCAGCACTTGCAAAAAATGCACACATTTCATAGA
CCACCGAATCATATGTTGAATACAAATTTACCTATAAGTAGCAATCAGGT
GGGATCGGCTCCATCTGTTGATCCTTCTCTTTGGGACAGAAGGCCTGTTT
ATGCAGGGGAATCCCCTGATGCTTCATATTTTCAACCAGGACCTTTTGGA
AATATGAGAAATAACAGCAACTCACTGCATCCTCTAGAATTTGTTTCTCC
AGACATCTTTCCGGGTTTTGGCGGGAATTGTTTCGATCTGCCAATTGCTT
CAAAAGTACTGCAATCACCACAGCAGAGCTCTATGATGTTTCTCAGCAGT
GGTCAAATGTATCCTCGAATGAGTCCATTTAATTCTTCTCATGAACGAAT
GAAGGGCCGTCGAAATGAGGGAGTTTCCAATCAGGCTGACAGTAAGAAAC
AGTACGAGCTTGACATTGACCGCATAATCCGTGGTGAAGACAAGCGTACA
ACACTTATGATCAAGAACATTCCCAACAAGTATGTATATATTATGTTCAA
GTATGTAGACACACACACACACATAACTATTGTTATTCCTTTCATTATGG
AAGATAAATCACACCGGATCAAAAAGAGCTTAATGAAGGTTCAAAGATCA
AAATGAACCCACATATGCCCAAGTCTAGACTTTTTCTTTATTTGTATGCC
ACATCCCAGATCAACTTCTTAACTTCGACTCTGGTGCCACTTGTTGGGCT
GCCCTTAGCTCTAAGTTAGTATAATATTGTCCATTCCCAAAAAGTCTCAT
ACTAATAGAGTTAATTGACTTTTAATATTAAAAACCATTATTGTTTGTCA
CTTCCATGTGTGACTCGGGTTTTGCATTATGTTCTTTAAACCTTATCTTC
CTAAACACAAACAGTCTAAATGATTTGTGAAGATTGTTTAGCCAATTACC
TTAAGTGTCACAGTCACATTATTACTAGTAAATTATTTGGCATGATTTGA
CAAAGCTCATCTGGGTGATCCCATCTTGAACGTAATCTAGAGTAAAATTT
GAACGAATGTTCAAATTCTTATGGTAAGTATCTACCAACTTGTCCAGACT
AAGTGAAACTAAACTGGCTTACTTCTTGGAAATCAAGTAGTATTAATTGT
TGAGCAAAGTAGTTATATGCCACAGTGCTAGTGTGATGGAAGTTTTCTCC
TTTGATATGCATGCGTATTGTTATTGATTTGTTTTTTATTTAAAGGCTCT
TCTTTGCTCTCTTTTCATACTCTGGTGTGCACTCTTTGGACATCTATTAT
GACATTCTGTTAAATGTAGATATACTTCAAAAATGCTCTTGGCTGCAATA
GATGAGCATCATCGGGGGACTTATGATTTTATCTACTTGCCCATTGATTT
TAAGGCAAGTGTGTTCTCCTTATCAGTGCAGTCGCTTCTAGTTCAGTTTT
TAGCTGTTGAGGCAGTGGTTAGATGGTGCTGACATATTCTAACTGTTTTG
CTTCACTTCAATCGCAGAATAAATGCAATGTGGGCTATGCATTTATAAAC
ATGACCGATCCTTCCTTGATAATCCCATTCTCTCAGGTTTGACGGATCAT
ATTATTGCATAGGAATTTTTTTTCATCTGATAAACAATTAGAAACATGTA
AATGGTAATTCTATAAAAAGAATATAATATTGACAGGCATTCAATGGGAA
GAAATGGGAAAAATTCAACAGTGAAAAGGTGGCATCATTAGCTTATGCGC
GCATACAGGGAAAAGCTTCCCTTATTGCCCACTTTCAGAATTCAAGCTTA
ATGAATGAGGATAAGCGCTGCCGGCCAATTCTTTTTAATACTGAAGGACC
TAATGCAGGTGATCAGGTATGACAATCAGCGAACTCAATGATTTTATACT
TCCATAATTGTTACTTTTCCAAATTGGTTATGTGTACTCATTCTGTTTGT
TACATATTCAAAGATAGATACGTTTCTTATTTTACAATATATTTGAATTG
GAAGTTCCTACAACACTATTAGTTTTTCAGACGGAAGTTAAGACAGTAAT
GACAGCACTTATGAAATAAAATTTGATTAATTCTTATGTAAGACTTGATA
ATAATAGTGTGATGACTGAGAATACTGGCGAATATCTGTTTATGAATTAT
GTTTGTGGCAAAACTAGAAGGGGTTGGCATAGATAGAGTTGTTCCTCCCT
GGCCCCCTTACCTTAAAAGTAACACTTAAGACGCACATTCCGGCCATACT
ATGTTGAAAGCCAGTACAGGTATACAGCAAATGAAATCTGCCAAGGGAAT
AATATTTTTGGCCTCCTCCACCGCTTGTTTTGTTTCAGGTGCCATTTCCT
ATGGGCGTGAGTGTTCGTTCCAAATCTACCAAAAACAGAACTGGCACAAC
CGATGAAAATCATTTAGAAACCTCAGCGTACTCAAGCAACGGAGAGGAAT
CAAGCAGGGACTCTTCTTCACGTTCCTCAAGAAACGCGGATTAACCAAGC
CACTTTCATGCCAACTAACCATTTTAGAATTTGACAAGCTGATACAAAAC
AAAGATCTCCCTCTGAAAATATTATGTACATTGGGGAGTAACTATATAAT
CCAGTTTTGATGTTTCTGAAAAGCCTTTTCCAGTATGCTTGACAAACCGG
GCTCCAAATTTTGGACACTCTTGGAGGAAATATGGAACCAACATGACAGA
CAGTCTTCAAGTGGTAAACTGTACAGAGGAGGCTTCTTCTGTTCCTTTCC
CGGCATTTTTTCATCTTTTTTTCTTTGTGTTTCCGCTGTTTCTTGTTTGC
TCTCTGATTTTCTTACTGCCAAGAGATCAGTCACATTTCACTGGATACAT
TATTATTCATATGAGAAATGAGAAATTTGAGTTGATGTCCAGCTATATAT
TGCATTGTATTTTCTGCTGCCACCTCAACTTTGTTAAGCGGCGGTGCTGA
TCCAAGTAGGGATGAGCAGAAACCGAATCGCAAACCGAAACCGAACCAAA
AAACTGCAAAAATCGTATGAAACCGCATCAAATAGAAACCGAACCGAATA
AAAACCGCACCGATACTTTGGTTGTGGCTTTGGTTTTCAAAATTTTAAAG
CCGAATACAAACGGAACCGAACCGCAATAATATTTATAATTATTTATTTA
TTGTATATATTGAAATATAATATATAAATTATATTATATATATGTATATA
TTATAAAATATATAATTATGTATATTAGTTGATCTAACAAGAGTATAATG
CATGTTTGTGAGTTATTTGTCATGTCTGAATTTATAAATCTCAATCTAAA
AGCCTGATTAAACTACTACTAATTAAGATGCAACTCTCATTGATAGCCAC
CTGCAGAATCACATACCATGGAGAATGTACAAAGACATTATCTCTTACAA
CTATATTTTACAAGTAAATAAATTTTTATACAGAATCAATGTTAAAGAAG
TAGTATTGTTAGAAGTGAACTTCAGTGTACGCACTGTCGCACTGTAGGGG
TCTGGTTGTAATTGGTATATCATAAATGTTTGCTGCTATGTTAAGGGGAA
AACATTGTATATATAAAAATGGTAGCTTGCTATGATGTAACTGTTCGTTA
TTTAATTATATTACTACTTTTGACATATTTATTATGAACTTGTTAAAAAT
CAATATTTTTCAAACTCCTCACGGCTTGAAAACCAAACCGCACCCTATAA
AATCAAAACCGATAATTTTATAAACCGAACCGCACCAATGACATTTGATG
CGGTTTTGATTTTGAATTTTAGAAACTGCACCTCGTGGTTCCGGTTGCGG
TTTTAGGTGCAAACCGCACCATGCACATCTCTAGATCCAAGCATTGATTT
CCTGCTATTAATTAATCATTTCTTTATTTATTTTTGTATCATTTTGTGTT
ATTTACTTCTTTTTTAAAACGAAAATATTCATTGATTCCAAATTAGATGA
TCCACTTAATGTTACACGTATGATCGTTTTTTTTTATAATTTATTTTTAA
AAAACCCTTTTTGTAAATAAAATTTTATATTTTAAATAATTACGCGGTTT
TAGAACGAAGGGAGGGGAGTATTAAGCTGCAATAAATATATAATAATTAA
ATATTTTAATAAATAAAAAACTAAAATCCTATTAAAATGCTTCCAATAAT
AATGATCTTAATAACTTTAACTCTTTGAGCGTCAAAAGAAAAGGAAAACG
CGGGAGTAAAAAGTAAAGCCAAAGCTTGAGCTGAGAGATTATCGGAGCAT
GGCGGCCATACAAATACTCATGGCATGTCCAAAATTACAACAATTGCCAC
TACCACTCTCTCAATCTCACGGGGGTGTATTCGATTGGGATTTTAATGCA
TTGTTTTTAGTTTATAGATTTTAATGGATTGTATGGGATTTTGATTTTGT
GCGGATTCTTGACGAAATGTCGCAGAGTTGATAGGATTTAGGTACAATGC
TTCAAAATCCCATTGAATTTGGTGGGATTTCAAAAAACTTAAAATACACT
GAAGAATGCCACAAAATCCATCATTTTATGAAATGAAAAAAAATCCATCA
GCATTTGAATACCATCAGATTTTAATGGATTTTAAACAATCCCAATTGAA
TACCATCGGATTTTAAAGCATAATTTAAAATCCCAATTGAATACCATCAG
ATTTTGTAGCATAATTTAAAATCCCAATTGAATACCTCAAGATTTTAATG
GATTTCAAACAATCCCAATCGAATACCCTCGGATTTCATGAATGCAAAAA
AATGCTTTAAAATCCCAATCCAATACACCCCTCTCAATCTCATAGGCCTT
TGCGTTCATTTTTGTTATTACAATCACCAGCTTCTTCTTCTTCTTCTTCA
TCTTCATCCAAGAAGAAGCGGTTAGAGATTAGGTGCCAGGCTGCTGATGT
TGATGCTGATTCCTCTTCGCAGCAGATTTATCAAGGCTTCTATGGCCCTT
GGTCTGTTGATTCCTCCGACGTTCGCGAGGTACGCTCGCACTTTACACCT
TCTGTTTCGCTCATTTTTATTATTCATTAACTCTGTTTACGATTGGGAAT
ACGTCAATTCAATATAGATTGTGCTTTTGTCTCGATTGGCTGCAAACAAA
TTATGTAAATCAAAAAGTATATCAGTATGTTGGCTCGTAATACCTGATGA
GGGGATGGGGCTTATTAGGGTTTGTTTTACTTCTCTCGCAAGATAAAGTG
GAATAAAACAACGATGTAGTCATCGGAAAATAAACTTATGAATAGATTAC
CGACTGATATTTATATCAAGCCAATAATAAAACTATGATTGGGGTCTGAA
GAAACACCTGAACCAGCCTCACACGAAAAGAATACACAACTGCTAAGCCT
GCTATCATGTAACTAAAAACATCATGTAACTGTTAAGCCTGCTATCATGT
TACGAAAAGAATAAAACGTCAACGGGTTCAATTGTATATGATTTTTTTGT
ATTATTGTAACGACTCCACTACCTTTGCTTGGAAGTTGGAGCCGGAGAGA
GAGCCATAGAGTTACAAAGAGGGGTTAAAATCATGACATCCTCAAGCTTG
CACAATTGTTATAACTAGTGTTATGTAACTTTAAATTGAAATTACTCTTC
TAGACTTTAAATATACTCTTGCATAAAAAAACAATATTAGCAAGTTAACC
TTGCCAAAGGATTACCAATACGAGTAAAGGTAATGCATCTAGTACAAACT
AATAAATTAAAGACCTCGTTTGGAAAAAAAAAAATCAATCAAAAGCTAAA
CTGTATAACTATAACAGATTTCCAGAATATTCTGAGTCACACAGACTAAG
ACAACTCTCTCTTAATTTTCACAAACTATCATACATTACCCTTGAACTAG
AGTAGCACAACGAGCATCACAAATTAAAGTTCATGGCAGCAATACAATAA
GTTGAAACAAATTACACAAATATTCAAACATATTACAAAAATATTCAAGA
CATTCAAACAAATTACAACTGTTCTGAAAGGAGGGGTCATGAAACTAATG
AAATCCACCAGTAATTGTCCACAAACCACCTGCTAGCAATTACTAATCAA
TAATCATCAAGGGACATGTTACTGCCCTTGGACAGGTTATCGATGGCCAT
GTCACTGCCCTTGGATTGATGTCTGCCCTTGGACGTTGACCCGAACTTTA
ATCAGCAAAAAGATCTTTGAATGCAGTTTTGAGTCTTTTGACCTCTGTAT
AGAACTCCAGCAGCTGTTTAATAGAAACAAAAATAAAAAAAATCTTGTTA
GTTTCTGCAATCACTTCAACAGCCGACTAGGTATACTTTCGTACGCAGAT
GCACAACTCAATCAACAACCTCACTCTTCACAGCTCTACTCACTACATTA
CATCAAACACCTGGAGTGCACAACTACTAATACACATCGGATCACTAAAA
TTCAAAAATCACAACCTTAACTTGTCCCCACACAGCTACAACAACTCCTT
ACAATTCACAACCTCAATTACTTCTCAGATGCAATAATAGATCCAGATCA
CACCAAAACAGCACAATATTAACTGTAAAGCTCTAAAAACAGAGTTTAAC
CTAATACTCCCTCCATCCCAAATTAGATGATCCTTTTGACAAAAAAATTT
ATCCCAAAATAGTTGAGCCTCTCTCTTTTCAATGCACATTTATCACCAAT
CTTCCATCCTTACCCTTTCTTATTTATCATTTCCAATGTAACATCTTACT
AATACTATATAAAGTCAACACAATAAATAAGGGCATAGATGGAAAAAAGA
TGAATCATTTAATACTCCTTAATATGTGTGAAATGAGCAAAAGGCTCATC
TAAATTGGGATGGAGGGAGTATTTTTTTTGTGGTTTTCTTCATTAACAGC
AACTAATGACACTTATTAGGTCAAAACACGACTGAATAAGCAGTTTAGAA
TTGAACAAACTAAGAGCAGATCTGCAAGTACAGATCAAACAAACACCTCA
GATGTAGAAAATACTAAAGGTCTGAATTTTGAACTGAGATTACTGTGATT
CTAAGCTCGGACAACTCGGAATAGAGTGCACAACACAATGGAAGCAACTA
ATCATAAAAAACCACAAAAGCAATCTACTCGAAATTAAACATAAAACAAC
ATATATGAAAATAATAATGCACAATTACAAGCACATTACAGAAATGAACA
TGGCTAGTTGTTGGGAAATACTAACAAATAGAATGTGAACAAAGTATATG
CCTAAAACATGACAATGACAAATTAGGGATTTGAATTGGGGTAAACCATT
GAATTGGGGGTATACAAAGACCAGAGCAAACAAACAAAAACACAAACACA
AAGACGTGCCCAATTTCGGATCCCTATTAATTCACAAATCCTAATTTCTT
TTAAGACTACAAATCTGATACTTGGATCCGCACCCGTGACTGACACCCAT
ACCCGACTCCGGGTAACATAGCATGTAATCATATTTCTATATACACAACT
TAAGTGCCTCGCATTAATTCAGTCTTTTCCTGTTCTGCAGGTTATCTTAT
ATAGATCAGGTTTGGTCACTGCTGCTGCCTCCTTTGTGTTTGCCGCTTCC
ACAGCTTTCCTGCCTGACCATTCCTTCCTCACTGATCTGATAAAATCAAA
TTATGATTTTCTCTATGCACTATGTGCTGCTGGTTTAGGACTATCCTTGT
TTCTGATCCACATCTATGTAACTGAGATTAAGCGCACTCTTCAACTATTT
TGGGGCCTTGGTGTTTTAGGATCTTTAGCCACCAGTTTCACCCTTGCTGA
ACCAGCTGGTCAGAACTTGGTACAATATGTAGCTGACCACCCAACTGCTG
TCTGGCTCGTTGGTCCACTCTTTGCTGCATTTACAGGGCTTGTATTTAAG
GAAGGTAATTTTACTCTCACTCTCTTTGTGTGCTTGTTTTTTTATTTTAT
AATAATGATGGCATATGTTGTTTTTTTTTTCATCAGGAGGGGATGGTTTT
TTTTCTTCCTCAACTAATGCAATAAACTTATATTTTTCCCTGAAGTATTA
GAATATGCTATATATATATAGTTCAATTATTCATCAACAAAGCTTATAAT
TAAAAAATAGACATAGTTCTAAATATTATTCAACTTCATAGCAGGTTGAG
TGTCTTAAATAATGGGCTATCAAATATGTGCTTTAAAAAAATTATGTGCT
GTGGCTATATCAATCTAGGTTTTGCTGATGTTTTTCTCTCACATCGAGTA
CTAATTTGATTCTTCATCAATGAATCAGGGCTTTGCTATGGAAAGTTGGA
AGCTGGAATTCTCACATTTGTAGTTCCTGCAGTTCTTCTTGGGCACTTGG
TAATTCTAATTTTCATACGCAAGCCTTCCGTTTCTTGAGTATATGATGAA
CCTGGGAGCATTTAGTGTGAAGTTCTTTTGCATTGCCAAATTAAAGGACA
TAAAGATTGAACACTTTGATAGGAATTTGATCAAAAAACTAGGCCAATCT
GCTAAAAGGAAGCAATTTGAGACCTCTCATGTAATAAAAACCTGACCACA
AGCTTAGTAGTTAATACACAATAAACCCTCTTTTGATTTATAAATGATTT
TTGTTTGATTTGAACAAAAGAAATTGCCAAAGTTTTTTATTAAACTGTGA
GCATTTTTCAGTACTTCGTTATCTATGCGTGCATTGGAAAAGGTTCTTCC
TCCATTTTGGACTTTGAGATGCACAATTACAATGTGTATTTATCTAAACA
GTTTTGCCTTTTAATCTATATGATGTTTACAGCAATGCTCAATCAACTTG
GAGTTCTAGTAATCACGTGATATAATATGAAGACCATTTATTGTATGTTC
TGAATGAAGTATATATTTACTTCTTGCACATACTACACAGAAAATTGTAC
AGCTATTTCTGGAATCTGAGATGGTAAACTATTGAGCCGTCAATGCTTCC
TTTTCTAACTAAGGTATTATTTTGAAAATACAGACAGGTCTAATGGATGA
TGGACTTAAGATTTCTTTACTTGGTCTGTGGACGGCTCTGTTTGTGATTT
TTGCCGGGCGGAAGTTCACTCAGCCAATCAAGGTAAAATTTTCATTTATT
TCAGATATTCTTAACAAATAGATTAATGTCGAATCTTATAGAATCAGTTT
GCTGTTAAAGGATGATATCGGTGATAAGTCGGTCTTCATGTTCAATTCTC
TGCCAGAAGAGGAGAAGAAGCTTGTAGTTGAGAAACTTGAACAGAGAAAT
TATACAGACAATCTTGATAAAAGGGAATAA
Sequence Length:
14380
Sequence Checksum:
be201302d5ce8f2a7a76c164cfb8f7ff
View location in JBrowse:
Cds:
>DCAR_024633cds ATGAATGTAGGATCCACAGTGCCATCTGAGTTCATGGACCTCTATGCTTT GCCTCCGTCATCATATTTTTCTGAGCGACAAGTTGGCTTCTGGAAGACGG ATAGCATGCCTGAAAGCTACGGCTTAAAAGGAGAAGGAATGTCACAAGCA GCAGGGAAAAATCTATTTGCTTCATCACCACTGGACTATCGAATGTTTGC GGATTCTTCTTTGGTGACATTGTCACCCAGTGATGCTCTACACGGCCATT TTGTTCCTGCTACTTCCGAGTACGAAGAAGAGGAACCATTTGAGTCACCA GAAGAAATTGAAGCCCAAACCATTGGGAATCTTCTTCCTAATGACGATGA ATTGCTTCTGGGGGTGACCGATGGTTTTGACTATATCACTCGACCTGGTA ATGGAGATGATATAGAAGATTTGGACTTCTTCAGTAGTGGTGGAGGGTTG GACTTGGGAGAAAAACAAATAAGTTGTGACATTTCAACTGCCAGGTTGGG GGGATCAAGTAATTCTATTGCTGAGGAAAACCCATCTAGAACACTATTCG TGAGAAATATTAATATCAATGTTGAAGATATTGAATTGCGAGCTGTTTTT GGTCAATATGGAGACATTCGCAGTCTCTATACAGCTTGCAAACATCGAGG CTTTGTTATGATATCATATTATGATCTACGAGCAGCCCAAAATGCTATGA ACGCACTTCAAAACAAGCCACTGATGCATAAAAAGCTTGACATACATTTC TCGATTCCAAAGGGCAACCCTTCTGAGGAAGATAGCAATCAAGGTACCCT TGCAATTTCTAAGCTTGATTTTGCTGTGACAAATGATGAACTCCGAAAAC TGTTTAGTGTATATGGAGACATCAAGGAGATTCGTGATGTTCCTCATAGG TGTCATCACAAATTAATAGATTTCTATGATGTTAGAGCCGCTGAGGCTGC TCATCATGCATTAAGCAGAAGAGAATTAGCAGGGAAGCCTGAACTAACAC ATCCTGATGGTAATACGCGTTTTATGCAGTCATTTCGTGAGCTCGAGCAA GATTATATCAGTCCATATCTGCAACAAAGTAGTTCCTTTGATGTGAATAC AGGACTAGCTTCACATGGGCAAATAACATCTTTTAGTATGGAGAACAGCA ATAGACTGGGTGTTAACTATTCAACGGGATCCCCGGTTAGTCAATACCAA GATATTGCATTTCAACATGGGGTATCGTCCAGTGTTCCAAGCAACTTACC CTCTGCTATCAGAGCGGAATTACTCGGACTACAGTCCAGCATTACTGACT CTGGTCACTTGTTGAGCAAGAGAAGCTTAGAAATTCCAAGTGCACCAATT TTCCATCCACATTCCCTTCCAGACCACCCTGATGAATCTGTAGTTTTTTC ATCTACTGGAAGTGAGAGCTATGTCCCTCCTCTACCACATCATTATATGT GGAATAATTCATCTATGCTTCACAGCGTTGGGTTCGGCAATAATGATATC TCCCAACATATGTGGTCCAATTCCCCATCAAATCTTAATGGGATCTTTTC TCCTCAGCACTTGCAAAAAATGCACACATTTCATAGACCACCGAATCATA TGTTGAATACAAATTTACCTATAAGTAGCAATCAGGTGGGATCGGCTCCA TCTGTTGATCCTTCTCTTTGGGACAGAAGGCCTGTTTATGCAGGGGAATC CCCTGATGCTTCATATTTTCAACCAGGACCTTTTGGAAATATGAGAAATA ACAGCAACTCACTGCATCCTCTAGAATTTGTTTCTCCAGACATCTTTCCG GGTTTTGGCGGGAATTGTTTCGATCTGCCAATTGCTTCAAAAGTACTGCA ATCACCACAGCAGAGCTCTATGATGTTTCTCAGCAGTGGTCAAATGTATC CTCGAATGAGTCCATTTAATTCTTCTCATGAACGAATGAAGGGCCGTCGA AATGAGGGAGTTTCCAATCAGGCTGACAGTAAGAAACAGTACGAGCTTGA CATTGACCGCATAATCCGTGGTGAAGACAAGCGTACAACACTTATGATCA AGAACATTCCCAACAAGTATGTATATATTATGTTCAAGTATGTAGACACA CACACACACATAACTATTGTTATTCCTTTCATTATGGAAGATAAATCACA CCGGATCAAAAAGAGCTTAATGAAGAATAAATGCAATGTGGGCTATGCAT TTATAAACATGACCGATCCTTCCTTGATAATCCCATTCTCTCAGCCTTTT CCAGTATGCTTGACAAACCGGGCTCCAAATTTTGGACACTCTTGGAGGAA ATATGGAACCAACATGACAGACAGTCTTCAAGTGGCTGCTGATGTTGATG CTGATTCCTCTTCGCAGCAGATTTATCAAGGCTTCTATGGCCCTTGGTCT GTTGATTCCTCCGACGTTCGCGAGGTTATCTTATATAGATCAGGTTTGGT CACTGCTGCTGCCTCCTTTGTGTTTGCCGCTTCCACAGCTTTCCTGCCTG ACCATTCCTTCCTCACTGATCTGATAAAATCAAATTATGATTTTCTCTAT GCACTATGTGCTGCTGGTTTAGGACTATCCTTGTTTCTGATCCACATCTA TGTAACTGAGATTAAGCGCACTCTTCAACTATTTTGGGGCCTTGGTGTTT TAGGATCTTTAGCCACCAGTTTCACCCTTGCTGAACCAGCTGGTCAGAAC TTGGTACAATATGTAGCTGACCACCCAACTGCTGTCTGGCTCGTTGGTCC ACTCTTTGCTGCATTTACAGGGCTTGTATTTAAGGAAGGGCTTTGCTATG GAAAGTTGGAAGCTGGAATTCTCACATTTGTAGTTCCTGCAGTTCTTCTT GGGCACTTGACAGGTCTAATGGATGATGGACTTAAGATTTCTTTACTTGG TCTGTGGACGGCTCTGTTTGTGATTTTTGCCGGGCGGAAGTTCACTCAGC CAATCAAGGATGATATCGGTGATAAGTCGGTCTTCATGTTCAATTCTCTG CCAGAAGAGGAGAAGAAGCTTGTAGTTGAGAAACTTGAACAGAGAAATTA TACAGACAATCTTGATAAAAGGGAATAA
Pep:
>DCAR_024633pep MNVGSTVPSEFMDLYALPPSSYFSERQVGFWKTDSMPESYGLKGEGMSQA AGKNLFASSPLDYRMFADSSLVTLSPSDALHGHFVPATSEYEEEEPFESP EEIEAQTIGNLLPNDDELLLGVTDGFDYITRPGNGDDIEDLDFFSSGGGL DLGEKQISCDISTARLGGSSNSIAEENPSRTLFVRNININVEDIELRAVF GQYGDIRSLYTACKHRGFVMISYYDLRAAQNAMNALQNKPLMHKKLDIHF SIPKGNPSEEDSNQGTLAISKLDFAVTNDELRKLFSVYGDIKEIRDVPHR CHHKLIDFYDVRAAEAAHHALSRRELAGKPELTHPDGNTRFMQSFRELEQ DYISPYLQQSSSFDVNTGLASHGQITSFSMENSNRLGVNYSTGSPVSQYQ DIAFQHGVSSSVPSNLPSAIRAELLGLQSSITDSGHLLSKRSLEIPSAPI FHPHSLPDHPDESVVFSSTGSESYVPPLPHHYMWNNSSMLHSVGFGNNDI SQHMWSNSPSNLNGIFSPQHLQKMHTFHRPPNHMLNTNLPISSNQVGSAP SVDPSLWDRRPVYAGESPDASYFQPGPFGNMRNNSNSLHPLEFVSPDIFP GFGGNCFDLPIASKVLQSPQQSSMMFLSSGQMYPRMSPFNSSHERMKGRR NEGVSNQADSKKQYELDIDRIIRGEDKRTTLMIKNIPNKYVYIMFKYVDT HTHITIVIPFIMEDKSHRIKKSLMKNKCNVGYAFINMTDPSLIIPFSQPF PVCLTNRAPNFGHSWRKYGTNMTDSLQVAADVDADSSSQQIYQGFYGPWS VDSSDVREVILYRSGLVTAAASFVFAASTAFLPDHSFLTDLIKSNYDFLY ALCAAGLGLSLFLIHIYVTEIKRTLQLFWGLGVLGSLATSFTLAEPAGQN LVQYVADHPTAVWLVGPLFAAFTGLVFKEGLCYGKLEAGILTFVVPAVLL GHLTGLMDDGLKISLLGLWTALFVIFAGRKFTQPIKDDIGDKSVFMFNSL PEEEKKLVVEKLEQRNYTDNLDKRE*