Resource Type:
Gene
Organism:
Name:
DCAR_025198
Identifier:
DCAR_025198.gene
Locus Tag:
DCAR_025198
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_025198, is a part of gene, DCAR_025198. |
| The genetic_marker, MK003846 K1290, is located in gene, DCAR_025198. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_025198 | DCAR_025198.mRNA | mRNA | DCARv2_Chr7:24746984..24757867 |
Sequence:
ATGGCCGGAACACGGCGGCGTCTGCCTCCCAATCGCCGTCGTCTTCGTCG
TCCGCCGTTCCGGATCAACACAGACCCCACCAGGTTAGTTACTTGCATTT
AACGAATTACTGATTTAAGTATGTGTATGTTGCTGATTTGCTTAAATGTT
TTCGAATTCATTGTTTATTTGTAGTTGCGTTTGTTGAAAATTGAGATAGT
GTTATGTGTATGGAGTCGATGGTAATTGATACTCAGTGTTTGCCGGGAGA
AATGTGTAAACACTGTAATTACTCAGAGTTGATTTACCCTAGTTTAGGAG
AATCGGATCCAACTGTTTTAGTTTGTTTAGTTCATTGATTAGTATAGGTA
TCCGTGTTGTGGATAGATATATATTATTCGATTTTTTACATGCCAAATGA
GTACAAACTCGCGGTTTCTTAGACTTTCGGATAACAACTTCTGATGTTGA
GATTTTACCGCCGAATATTGATATAGAAGTAGTTTTCATAATTGCATTGA
ATTCTGAGAATTTTAGTCATATTCCGCTTGTCAATCAGGTAAAAATGTGC
TTATATCATTCATATATACTGTCCTGATGGGCTATATTAAAGATAATATT
AATTTAATAAAAGATGTTAGTTCAGTGACTGACATCAGTAGTGTGCATAG
TGCTTCCATTTTGGTGTCCGTCGGCCATGTACACCCTCCATTTTTTTTAT
ATAGGACGCTTGACTTTTTGACACACAGTTTTAAGTCCTTTGGCCCCATA
GTTAAAATCATTATTTTTAAAATTTTCTTTTTGTCAGTTACAATATTAGT
CACATATTTTATTCAGAAGATATGTAAAATGTGGTCAAAAGACTTAAAAG
TGTGTTCAAAAAGTTAAGCGCCCTATATAAAAAACGGAGGGAGTAGTTGG
ATTTTTATCGTGACAGTCAAATGCTCTATTTGAGCTCAAAGGGTTAGAGG
TTCCACTCCATACAGCTTGATCACCCACAATTCTGCAGGAATATTGGTTC
TTCTATGTATGCGACATAGGCTCTTATATGTCTTTGGTACATAAATTTTT
TAGGAAATGAGCTCATTATAGAGGAAATAAGCATAAGACAAGTTTATAAT
GATTATACTTATTATTATATTCTTACTTTCTTTTAATTTGGCGCAGTCCT
TCCATCAACAGTTACTTAGGAAACCCGATGGGACTGAAGCTATGTTAGGA
TTCCAGGGTGGACTTCATGGAGAGTTGGGAGGAAATATTGGGTCAAATTC
TGGCTCTATGCTTGTACAACCTAGAAGTAGGGAGGAAACACATAATAGGA
ATCATGGATTTGACCTACAAATGCTGAACCCAGCACAGCACTCCTACTTG
CAGTATCACTCAGCACAACAGAAGTCAGCTCCAGGGATGCAGTCTCAGCA
CCCAAGCAAATTAGGAATGGCTGGGCCTTCTGTGCAAGACCATGACATGC
GGATGGGAAATATACAAATGCAGGATCTGATGTCCATTCAGGCTTCAGCA
TTGTTATCAAACAAGAAACCAGAGCATTTTGGTCATGATGAGAAGCTAAG
TGAGGAACAGAGAAGTGATTCCAAGCCTCCTGTTCAAACATCACTTGGAC
AACTGATGCCTGGGAATATGACAAGCCCTATGCAGATACCACAATATCAG
CAAAACATCCAAAATATGGGTAATCAGTTTGCAATGGCCGCACAGATGCA
GACAATTCAGGCTTTGGCACTTGATCGTAATATTGATATATCTGTTCCTG
CAAATGCAAATTTTATGGCACAACTTATGCAAATGCAATCCAGGATAGCT
CCACAGCATAATAAGCCAAATGAAACCAATTTAGGGGAAAAGTCTTTGTC
CGTCACAATGCCAAAGCAGCAGGTAACTTCCCCACAAGTTGCAAATGAAA
GTTCTCCACGTGGTTGCTCATCCAGTGATGTGTTGGGCCATTCTTCTTCA
GCTAAAGTGATGAAACAGACAGGTCAACCTGGCCTGTTTTGTGCATCAAC
TGCTTCCCTGGTTCCCAATGCCAATAACCACCCACTGCAAACATTTTCTG
CTCATAGCAGTGATAGTCAGTTGTTATCAAGACAGCGTACCATGATAGAT
AATGGAGTTCCTCCCATGCATACTCCACAGTCATATGTTAACCAGAACCA
ACAAGTAGATGCTAAGCCAATCCAGCGATCTTCTCCTCTCTCAGCAGCTT
CACCAAGTGAAGGGGGATTAGTGAATCCTTCATTTCAGGGTGGACCACTC
ACTCACTTGCCACAACAATTAGGATTTACAAAACAGCAATTACATGTTCT
TAAAGCTCAAATACTGGCTTTTAGGCGTTTAAAGGTGTTTCTCACTATTT
TTCTAGAAATATTTAAAACACCATCAGCACTGGTGAATTATTCCTGTCTG
TTATATATATATATATATTTTTCACCATAAGATTCTATTTGCCTTCTTGC
AGAAAGGAGATGGAACACTTCCACATGAATTACGACAGGCTATAGCTCCC
CCACCTCTTGACGAACAGATGTTGCAGGCATCACAGCCTGGGCCAACAGA
TGCATCTGGTGGGAGAAATGTACGCATGGAAGATCATATTAAACGTGTGG
AATGCAGTGAGAAAGATCTGCCCACTTTTTCATCAAATGACAGGCTTAGT
AATGTCAAAAGAGAAGCAGTTGCTGAAGATGAGAAAAGAAATTCTTCTAG
ACAAATTGTACGAGCTGTACTGAAAGAGTCACCATCAGCTCCTCCTCAAG
AAGAAGAGCATCAAACAACTATCTCTTCTGCTAAAGTGGAAGAGGAAGAT
CATGGGATTCAAGGAGATGGTATTGCAAGAAGTGATGTGCATGTGGATAA
GGGTAAGGCAGGCTCTTCAGTAGCTCCTCTCTCTGAAACAGTGCAAGTGA
GAAAACCCTTCCAAGTAAGCACCACACCTCAACCGAAAGATACTGGACCT
ACTAGAAAGTATCATGGACCACTGTTCGATTTTCCCTTCTTTACACGAAA
ACAAGATTCATATGGATCAGCAGCAACAGTGAACAAACATAACAATATGA
CCTTGGCATATGATTTGAAGGATCTTCTTTCTGAGGAAGGAAAGGAAGTT
CTTATCAGGAAAAGGACAAAAAATATTAAAAAGATTGGTGATCTGCTTGC
AGTAAACTTAGAAAGAAAAAGAATCAGACCTGATCTTGTATTACGATTGC
AAATTGAAGAGAAGAAGCTAAGGCTCTTGGATGTGCAGGCACGCTTGAGG
GATGAAGTTGATCAACAACAGCAGGAAATAATGGCAATGCCAGACAGGCC
TTATCGGAAATTCGTACGACTCTGTGAGCGTCAACGTGCAGATCTCAGCA
GGCAAGTTCAAGCCTCTCGAAAAGCCATTAGGGAGAAGCAACTGAAATCA
ATATTCCAGTGGCGTAAGAAGCTACTTGAGGCTCACTGGGCCATGCGTGA
TGCTCGAATTGCACGTAATAGGGGAGTTGCCAAGTATCATGAGAGAATGT
TGAGGGAGTTCTCAAAACAGAAGGATGATGGTCACAATCAAAGGATGGAG
GCTCTGAAGAATAATGATGTTGAAAGGTATAGGGAGATGTTACTGGAGCA
ACAAACTAGTATTCCTGGTGATGGTGCAGAGCGGTATGCTGTCCTCTCGT
CATTTTTGTCTCAGACAGAAGAGTACCTTCACAAACTTGGCAGTAAAATA
ACTGCGACAAAGAGTCAGCAGGAGGTTGAGGAGGCAGCAAATGCTGCTGC
AGCTGCTGCAAGGGCTCAGGCACTCTCTCTCTCTCTCCCTCCCTCCCTCT
GTGTTTGTGTGTTAATATATATGCTTCCTATATTGCGTTATTGCGTTATA
CTTGTCAACTCTAAAAAAGTTTCAATAATACATTTATCTGGATCTGTTAT
TTTTTTTGCTTTAATTTATCACTAGTTCCTGAGTACATTTGTTGCTCACA
GGGTCTATCAGAAGAAGAAGCAAGAGCTGCGGCAGCTTGTGCTGGAGAGG
AAGTAACAATAAGAAATCGTTTTACTGAGATGAATGCACCAAAAGATAGC
TCCTCTGTCAACAAGTAAGCAATTCTACTGTTGACAATTGAGGCTGCTGA
TGTTGGTTATGAGACATTGCAATATTGAAATCTTCTAACTGCCAAATAAT
TGAAAGTCGTTTCTCTAGTTTTAGTATGCAAATATGCAATTTACTTGTTT
TAGATACACATACACTTGCATTTATGTATCCTATGGTTGTACTTTTCCAA
TTTTATTTTGGGTGTTTTCTTAAATTTTGTGGTTATGTACAATGCATTAT
TTGTGGTTACAGGTATTATAATCTTGCGCATGCGGTGAACGAAAAGGTTT
TCAGGCAGCCATCAATGCTACGAGCGGGGACTTTACGGGATTATCAGATT
GTATGTCACGTTCTTTTGAGAATTCTTGTCTAAATAAAGTCTTTCCCTTG
GTTTATAGTCTATCTTTTTGTTAGTAGCTTCTTTTTTTTGCCTTTTTATT
CTAAAATATGGTGAATCACATTCCAGGTTGGTTTACAGTGGATGCTTTCC
TTGTATAACAACAAGCTCAATGGAATTTTAGCAGATGAGATGGGTCTAGG
GAAGACGGTACAGGTAAATCATTGCCTTAATTTTTTTTGTTAAAAATAGA
AAAAACCACCTCATTATTGTTGTTATGATGGGTCAATCACAGCATTAATA
GGTAGTGAAAGCAGTAACTATTTGTAGGTCTTGTGTCTTTCTTCATACTT
TTTGTTTGATTTTAATGTAGTGGTACATACATTATGGTCTTTTTAAGTTG
AAGTGCTTTCTATTGCTGCTTCTTTCTATAATGACCTGATATCCAAATTC
TTTTCTGTTTCTTGAACTTGTTAACTTAAAATATGTTTAAACAAATTTAA
AGTTGATGACTACTGCAATGTTTATCTTTATCTTTTGGGTTCATATGCTC
TGATAAGCCTTCATGTGATGCAATCACCATCAGAAATAATGTTAAACTTG
TTATCCCAAGTTGTTTGATCTTTGATATGCAGGTCATGGCATTGATTGCT
TATCTGATGGAATTCAAAGGCAACTATGGCCCACATCTCATTATTGTTCC
CAATGCTGTGTTAGTCAACTGGAAGGTTAATTTTTTCATCAAACCATATA
AATTGTCTTTTTCCCTATTTTTGGAACTGGCTAACTATATATTGTTTAAC
AGAGCGAGCTTCACAATTGGCTACCATCAGTATCCTGTATTTACTACGTT
GGTCAAAAGGATCAGCGCGCAAAACTATTTTCACAAGTAAGATTTTCTAA
TATCTTATTCGCACCGTGTAAATATGTAAAAATGGCTGATGATTTTTATT
TGTTATCTACAAATAGGAGGTCTGTGCTATGAAGTTTAATGTACTTGTGA
CGACGTATGAGTTTGTCATGTATGATCGTTCAAAACTCTCGAAGGTTGAT
TGGAAGTACATTATAATTGATGAAGCGCAACGTATGAAGGACAGGGAATC
TGTTCTTGCCCGCGATCTTGATAGATATCGCTGCCAAAGGCGCTTGCTTC
TTACAGGAACGCCGTTGCAGGTCTGTTTGTTGCCATGTTTTTCACTCTTA
ACTTCCTTCACGGACTTGGTTTGGCTCTAGCTTATGCTGTGTAAATAAAG
TTGCCTTTGTAATGAATGTACTTGTGACTTTATCCTGCTACCTGTACTTG
TTATTGTGGAAAAACATAATTTCCTATTTAAAAATCCATGTAAAAATTTT
CGTTAGATTTAGGCATTGATTAATAATGATTTGATAACCATCACCTTTTG
CTATGTGATAACCCGTTGCTTGAGAACGTTAGTTTTTTTTTTCCTGTTAT
AATAGCTGATGCTGGTATACCCATACTTAAGCTATTTAAGTAGAACTGCA
TGATGGTAACATGCTCATTTGATGTTACAAACTCAGAGTAGAAATTTTAA
GTCTCAAATTTGACCGCAGTACTGTTACTATGGTTACATATATTTTGGAG
ACTTACTTTATGTATAATATTTGACATTATTGAGTCGGCATCAACACCAG
TCTGACAAGGGACAAGACAACAAGACCAGACTATTCATGTCTTCACTCAA
ATGAGTTTTTTTCTGGAGCCATTTTATGAATTGACTTTACATGTTAGGTA
GTAGAATTGGTTATGCACTTAAGGTCAATCCTGTCAGTATCACTGGGAAT
TGTAGAAGTGATTGATATTGCACACCCATTAACCTTTATGTGAGAGAACA
TGTAAAAACCTCTACTCCAGAGTCCAGACTGTCTTGCATCGTCTTTCGGA
TAAGGTCTCACTCTTTGAAATCTTGTTTTATGACAAACTGACATTAACTC
TGTGGATTATGCCAATATCAAGAATTTTAGTTGGTGCCACCGATAACATG
AGCATTAAGTCGCTACTTGTTTATTAAGGTCTTGTCTGCTTTATTCTATA
TTCAACTCATTTGTTATTTGTCCTAGAATTCTATTCCTACTTTGAGTAGT
GGTGAAATTATCTTCATATGTTGCAGAACGATCTTAAAGAGCTCTGGTCA
CTTTTGAACCTACTCCTTCCAGAAGTGTTTGATAATCGGAAAGCATTCCA
TGATTGGTTCTCAAAACCTTTTCAACGGGAAGGTCCTGCACATAATGTTG
AGGATGACTGGCTCGAGACAGAGAAAAAAGTTATCATTATTCATCGGCTT
CATCAAATTCTTGAACCTTTTATGCTCAGACGTCGTGTTGAAGATGTGGA
AGGTTCACTTCCACCAAAGGTATGCAATTTTAGCAGGATGTGCTCGACAA
CTTCTGCATGTGGAGTTCTGATAATTTTATTTATTGCAGGTGTCGATTAT
ATTAAGATGTAAAATGTCAGCTATGCAAGGTGCCATTTATGATTGGATCA
AAGCTACTGGTACTTTACGTGTTGACCCTGAAGATGAACTGCTGATGAGT
CAGAGAAAACCTATGTATCAAGCTAAAGTATTTAGAACGTTAGCTAATAG
GTGTATGGAACTTCGTAAAACTTGCAATCACCCTTTACTCAATTACCCAT
ATTTTAATGATCTCTCCAAGGATTTTCTTGTTAGATCATGTGGGAAATTG
TTTGTTCTGGATAGGATCCTAGTAAAGCTTCAGAGGACTGGGCACCGAGT
ATTGCTTTTTAGTACCATGACAAAACTCCTAGACATTTTGGAAGAATATT
TACAGTGGCGGAGACTTGTTTACCGTCGAATAGATGGAACGACTAGCTTA
GAAGACAGAGAATCAGCTATTGTGGACTTCAATAGTCCTGATACTGATTG
CTTTATTTTCTTGCTAAGCATTCGGGCTGCTGGGAGAGGCTTAAATCTTC
AGACTGCTGACACTGTTGTCATATATGATCCCGATCCAAACCCTAAGAAT
GAGGAGCAAGCAGTTGCCAGAGCTCACCGCATTGGGCAGAAGAGAGAAGT
TAAAGTAATCTATTTGGAAGCAGTAGTTGATAAAATTCCGAGCTATCAGA
AAGAAGATGACTACAGGAAAGGAGGTATGGTTGATTCAGAGGATGACCTT
GCTGGAAAGGATCGATATATAGGTTCTATCGAGGGTCTCATACGGAATAA
TATTCAACAGTATAAGATTGACATGGCAGATGAAGTCATCAATGCTGGTA
GATTTGACCAGAGGACAACACATGAAGAGAGGCGATTAACCTTAGAGTCA
ATGTTACATGATGAAGAGAGATATCAACAAAGTGTTCATGATGTTCCTTC
ACTTCAGGAGGTGAATCGTATGATAGCAAGAAGTGAAGAGGAGGTAGAAC
TATTTGATCAGATGGACGAGGAATTTGATTGGGAAGAAGAGATGACTAGA
TATGACCAGGTTCCTAAGTGGCTTCATGCTAGTAGTAAAGAAGTGGATGA
TACAATTGCTAAAAGATCTTCCAAGAAAAAGTCATTACTTGGGGGAAATA
TAGGAGTGGAATCCAATGAAATTACTTCTGAAGTATCTACTCAACTTGAG
AAGAAAAGGGAAAGGAACAAGGCTAAAAAGTTTCCTGTTTACACAGAATT
GGATGATGATTTTTTTGAAGAGAGTTCCGAAGAGAGGAATGGACACTCTG
GTAATGAAGTAGAAGTTGAGGATCTGGAAGATGATGACTTTGTTGATTCT
GGTGACTCACCTCCTGGCAATAAGGATCGCCTGGAAGATGGTTCACTTAC
CGCTGAGGTCTCTGAGGATCCCCGGCCTTTAGAAAGTCATAAACCTGATC
ATACACCAGAAAAAGCAGGTTCATCAGGGTCATCTTCAGGCAATCGAAGA
TTGATTCAAATGGCTTCTTCTTTATCTTCTCAGAAATTTGGTTCACTCTC
TGCGCTAGATGCAAGGCCAGGATCTGCTTCCAGTAGGCTGGTATGTTGTT
CATTACTTATTGGAATTTGTAATAGCACATTGGTATCTGCAAATTGCACT
ATCTCTTTATTTATTTGTTTGTTTACTTTCCACTGCCAGCCTGATGACTT
GGAGGAAGGAGAAATTGCCCTCTCCGGAGATTCTCGGGCAGACCGCCGGC
ATTCTGGTAGTTGGATCCATGATCGTGATGAAGTTGAGGATGAACAAGTT
GTGCAACCTAAAATAAAACGAAAGCGAAGCATCAGAATTAGACCTCGACT
TACAACAGGAAAGCCAGAAGGGAAAACTGGTGAGAAATCATCTCTCCTTC
GTGGTGATTCCTCTCAGATACCACTGCAGATGGGTCATAAATACGATAGA
GAACAAAATCTGGTCGTGGAGCCCAATTCTCTGAAGCTGGAAAAACGTGA
TTTATCATTAAAGTGTAGTAGGGCTTTAGATTTACAGATAAAATCAAATT
CTGGAAAAGTGCATGCATCACAAAAGCCTAGCAAAGTCAATGTCTTGTCT
GCGCCTTCGGAAGATGCCACTGAACACTCCAAAGAAAGTCGGGATAGCAA
AGTAAAGCATGGAGCAGGGAATTCAATTGGCCATAGAATGTCAGATGGAG
TTCAGCGCAGGGTATGCCTTACAACACAACCATACTTGAAGTTACACCGG
AGTTGTACATTTTAATAGTCTGCTGCTTCTTTTCTATGTTGCATAAATAT
TTTTTACAAAAGGCACTGCTTTTCTCTGCTGTTAAGAGACAGACCATTGA
ATATCAGTCCCCCCCCCCCTCCCGGTTTGTGTGTGTGTGATCCTCTGTTT
TTTCCTCATGCTTCACCTTGTTTTTTAGTGAATTATTCCTCGTCTGCATC
ATTATCCATGTAGTGAAGACTAATTTTGGGGACCAGTTTTAGTTTTGTAC
TTGTGATGCATACTCAACTTTAGGGTGATGTGCTTACATGGATATGTGTG
CTTTAAAAATAGTTGTAATTAGGATTTAATTTGTGGCATTTTTTTAATGT
TGTCATAGTCATAAATGTTTCATGTTTTCAGTGCAAGAATGTGATGAAGA
AGTTCCAGAGGACACTAGACAAGGAAGGGCATCAAATAGTGCCACTTCTA
ACAGAACTTTGGAAGAAAAGTGAAGATACTGGTTACATGAGTGGGAACTG
TCAGATTCATATACAAAAGATTGACTATCAGCTTGAAAACTTTGGTTATA
ACGGAGTTATGGAGTTTGTTTCAGATGTGCAGCTTTTGTTAAAGGGCGCA
GTTCAGTATTATAAGTTTTCCCATGAGGTATTCTTTATAAATTTCACATA
TGTGCTTGCATCATGCTGCTTGAGTTCTTGTGGACTTAAATGTATATCTG
TAAGAGAGACGAATATGTTGTAATGATGATATAGAATAGTATAATGTGTG
TGTGTGTCTATATATATATATATATCAAGTTGGTGTTACCTTTTTGATCC
GAACTAATGTTCAGCACTGACTTTCAAATCCTTTTGTGTTGGCTGAGAGT
GTTGCTTTTTAAGTCGGGCATTTTACGGCAAGCATCTCTAGTGCTGATTT
TCTGTTATGAAGAATGAAAAGGCTTGCAAAATTATATTGGCGAATTTTTC
TGGGTATTCAGTCTCCATGGAGAAACATAATACATTCCAGATTTTATAAG
TATTTGGAAAATCTATTATATCATTTTCTTGGTACTAAAGTATATTTGTT
AAGTAACAGTCTCTTTCTCTTGGTCGCATACATGAAATATATTGTATGAT
TGGATTGGTGAATTATTTATCTATACATCTACCTTTTCACGCCCAGTCGC
CCACCACACTCATGAGAAGCGTTATTTGATTCTATGCTTTTCTATTTCAT
GAATAGGTAAGGACTGAAGCAAGGAAGGTGCATGATCTATTCTTTGATAT
ATTAAAGAAGATTTTTCCAGAAACCGATTTCCTAGAAGCCAGGGGTGCTG
TCTCTTTCTCGGGCCATGGAGCTTCTACTTCGGCTCCACCTTCAAAACAA
ATTCTTGCTGGTCAAGGCAAGCGAGCTAAACAAGCTACCATGGTGGATCC
TGATCGTAGCCACAAACAGAAGCCGCTTTCTCGTGGGCTTAGTAATGAAG
ACACTCGGATTAGAAGTCACATGCCTCACAAAGAGACAAGGCTTGGAAAT
AGCAACAGGGAGCTAAACCAGCAAGAAGATTCCGGTCTCTTCTCTCATCC
AGGAGAACTTGTCATATGTAAAAAGAAGAGGAAGGATAGGGAAAAGTTTT
CCGTAAAGTCGGGAAACGTTTCTGCTGGCCCAATGTCACCTGCGAGTGTT
GGCGGTAATATTAGAAGCCCAAGCTCAGGCTCACTGTCAAAGGATACCAG
ATTGATTCAGCAAGGAAGGGATAATCAGCCTCCTCATCAAGCAAATGTCA
GTAGCAGCGGAGGCATTGGCTGGGCAAATCCTGTGAAAAGAATGAGAACA
GATACCGGAAAACGGCGCCCCAGCCATTTGTAA
Sequence Length:
10883
Sequence Checksum:
6ff836611a93f3c222b29162912edc63
View location in JBrowse:
Cds:
>DCAR_025198cds ATGGCCGGAACACGGCGGCGTCTGCCTCCCAATCGCCGTCGTCTTCGTCG TCCGCCGTTCCGGATCAACACAGACCCCACCAGTCATATTCCGCTTGTCA ATCAGTCCTTCCATCAACAGTTACTTAGGAAACCCGATGGGACTGAAGCT ATGTTAGGATTCCAGGGTGGACTTCATGGAGAGTTGGGAGGAAATATTGG GTCAAATTCTGGCTCTATGCTTGTACAACCTAGAAGTAGGGAGGAAACAC ATAATAGGAATCATGGATTTGACCTACAAATGCTGAACCCAGCACAGCAC TCCTACTTGCAGTATCACTCAGCACAACAGAAGTCAGCTCCAGGGATGCA GTCTCAGCACCCAAGCAAATTAGGAATGGCTGGGCCTTCTGTGCAAGACC ATGACATGCGGATGGGAAATATACAAATGCAGGATCTGATGTCCATTCAG GCTTCAGCATTGTTATCAAACAAGAAACCAGAGCATTTTGGTCATGATGA GAAGCTAAGTGAGGAACAGAGAAGTGATTCCAAGCCTCCTGTTCAAACAT CACTTGGACAACTGATGCCTGGGAATATGACAAGCCCTATGCAGATACCA CAATATCAGCAAAACATCCAAAATATGGGTAATCAGTTTGCAATGGCCGC ACAGATGCAGACAATTCAGGCTTTGGCACTTGATCGTAATATTGATATAT CTGTTCCTGCAAATGCAAATTTTATGGCACAACTTATGCAAATGCAATCC AGGATAGCTCCACAGCATAATAAGCCAAATGAAACCAATTTAGGGGAAAA GTCTTTGTCCGTCACAATGCCAAAGCAGCAGGTAACTTCCCCACAAGTTG CAAATGAAAGTTCTCCACGTGGTTGCTCATCCAGTGATGTGTTGGGCCAT TCTTCTTCAGCTAAAGTGATGAAACAGACAGGTCAACCTGGCCTGTTTTG TGCATCAACTGCTTCCCTGGTTCCCAATGCCAATAACCACCCACTGCAAA CATTTTCTGCTCATAGCAGTGATAGTCAGTTGTTATCAAGACAGCGTACC ATGATAGATAATGGAGTTCCTCCCATGCATACTCCACAGTCATATGTTAA CCAGAACCAACAAGTAGATGCTAAGCCAATCCAGCGATCTTCTCCTCTCT CAGCAGCTTCACCAAGTGAAGGGGGATTAGTGAATCCTTCATTTCAGGGT GGACCACTCACTCACTTGCCACAACAATTAGGATTTACAAAACAGCAATT ACATGTTCTTAAAGCTCAAATACTGGCTTTTAGGCGTTTAAAGAAAGGAG ATGGAACACTTCCACATGAATTACGACAGGCTATAGCTCCCCCACCTCTT GACGAACAGATGTTGCAGGCATCACAGCCTGGGCCAACAGATGCATCTGG TGGGAGAAATGTACGCATGGAAGATCATATTAAACGTGTGGAATGCAGTG AGAAAGATCTGCCCACTTTTTCATCAAATGACAGGCTTAGTAATGTCAAA AGAGAAGCAGTTGCTGAAGATGAGAAAAGAAATTCTTCTAGACAAATTGT ACGAGCTGTACTGAAAGAGTCACCATCAGCTCCTCCTCAAGAAGAAGAGC ATCAAACAACTATCTCTTCTGCTAAAGTGGAAGAGGAAGATCATGGGATT CAAGGAGATGGTATTGCAAGAAGTGATGTGCATGTGGATAAGGGTAAGGC AGGCTCTTCAGTAGCTCCTCTCTCTGAAACAGTGCAAGTGAGAAAACCCT TCCAAGTAAGCACCACACCTCAACCGAAAGATACTGGACCTACTAGAAAG TATCATGGACCACTGTTCGATTTTCCCTTCTTTACACGAAAACAAGATTC ATATGGATCAGCAGCAACAGTGAACAAACATAACAATATGACCTTGGCAT ATGATTTGAAGGATCTTCTTTCTGAGGAAGGAAAGGAAGTTCTTATCAGG AAAAGGACAAAAAATATTAAAAAGATTGGTGATCTGCTTGCAGTAAACTT AGAAAGAAAAAGAATCAGACCTGATCTTGTATTACGATTGCAAATTGAAG AGAAGAAGCTAAGGCTCTTGGATGTGCAGGCACGCTTGAGGGATGAAGTT GATCAACAACAGCAGGAAATAATGGCAATGCCAGACAGGCCTTATCGGAA ATTCGTACGACTCTGTGAGCGTCAACGTGCAGATCTCAGCAGGCAAGTTC AAGCCTCTCGAAAAGCCATTAGGGAGAAGCAACTGAAATCAATATTCCAG TGGCGTAAGAAGCTACTTGAGGCTCACTGGGCCATGCGTGATGCTCGAAT TGCACGTAATAGGGGAGTTGCCAAGTATCATGAGAGAATGTTGAGGGAGT TCTCAAAACAGAAGGATGATGGTCACAATCAAAGGATGGAGGCTCTGAAG AATAATGATGTTGAAAGGTATAGGGAGATGTTACTGGAGCAACAAACTAG TATTCCTGGTGATGGTGCAGAGCGGTATGCTGTCCTCTCGTCATTTTTGT CTCAGACAGAAGAGTACCTTCACAAACTTGGCAGTAAAATAACTGCGACA AAGAGTCAGCAGGAGGTTGAGGAGGCAGCAAATGCTGCTGCAGCTGCTGC AAGGGCTCAGGCACTCTCTCTCTCTCTCCCTCCCTCCCTCTGTGGTCTAT CAGAAGAAGAAGCAAGAGCTGCGGCAGCTTGTGCTGGAGAGGAAGTTGGT TTACAGTGGATGCTTTCCTTGTATAACAACAAGCTCAATGGAATTTTAGC AGATGAGATGGGTCTAGGGAAGACGGTACAGGTCATGGCATTGATTGCTT ATCTGATGGAATTCAAAGGCAACTATGGCCCACATCTCATTATTGTTCCC AATGCTGTGTTAGTCAACTGGAAGAGCGAGCTTCACAATTGGCTACCATC AGTATCCTGTATTTACTACGTTGGTCAAAAGGATCAGCGCGCAAAACTAT TTTCACAAGAGGTCTGTGCTATGAAGTTTAATGTACTTGTGACGACGTAT GAGTTTGTCATGTATGATCGTTCAAAACTCTCGAAGGTTGATTGGAAGTA CATTATAATTGATGAAGCGCAACGTATGAAGGACAGGGAATCTGTTCTTG CCCGCGATCTTGATAGATATCGCTGCCAAAGGCGCTTGCTTCTTACAGGA ACGCCGTTGCAGAACGATCTTAAAGAGCTCTGGTCACTTTTGAACCTACT CCTTCCAGAAGTGTTTGATAATCGGAAAGCATTCCATGATTGGTTCTCAA AACCTTTTCAACGGGAAGGTCCTGCACATAATGTTGAGGATGACTGGCTC GAGACAGAGAAAAAAGTTATCATTATTCATCGGCTTCATCAAATTCTTGA ACCTTTTATGCTCAGACGTCGTGTTGAAGATGTGGAAGGTTCACTTCCAC CAAAGGTGTCGATTATATTAAGATGTAAAATGTCAGCTATGCAAGGTGCC ATTTATGATTGGATCAAAGCTACTGGTACTTTACGTGTTGACCCTGAAGA TGAACTGCTGATGAGTCAGAGAAAACCTATGTATCAAGCTAAAAATGAGG AGCAAGCAGTTGCCAGAGCTCACCGCATTGGGCAGAAGAGAGAAGTTAAA GTAATCTATTTGGAAGCAGTAGTTGATAAAATTCCGAGCTATCAGAAAGA AGATGACTACAGGAAAGGAGGTATGGTTGATTCAGAGGATGACCTTGCTG GAAAGGATCGATATATAGGTTCTATCGAGGGTCTCATACGGAATAATATT CAACAGTATAAGATTGACATGGCAGATGAAGTCATCAATGCTGGTAGATT TGACCAGAGGACAACACATGAAGAGAGGCGATTAACCTTAGAGTCAATGT TACATGATGAAGAGAGATATCAACAAAGTGTTCATGATGTTCCTTCACTT CAGGAGGTGAATCGTATGATAGCAAGAAGTGAAGAGGAGGTAGAACTATT TGATCAGATGGACGAGGAATTTGATTGGGAAGAAGAGATGACTAGATATG ACCAGGTTCCTAAGTGGCTTCATGCTAGTAGTAAAGAAGTGGATGATACA ATTGCTAAAAGATCTTCCAAGAAAAAGTCATTACTTGGGGGAAATATAGG AGTGGAATCCAATGAAATTACTTCTGAAGTATCTACTCAACTTGAGAAGA AAAGGGAAAGGAACAAGGCTAAAAAGTTTCCTGTTTACACAGAATTGGAT GATGATTTTTTTGAAGAGAGTTCCGAAGAGAGGAATGGACACTCTGGTAA TGAAGTAGAAGTTGAGGATCTGGAAGATGATGACTTTGTTGATTCTGGTG ACTCACCTCCTGGCAATAAGGATCGCCTGGAAGATGGTTCACTTACCGCT GAGGTCTCTGAGGATCCCCGGCCTTTAGAAAGTCATAAACCTGATCATAC ACCAGAAAAAGCAGGTTCATCAGGGTCATCTTCAGGCAATCGAAGATTGA TTCAAATGGCTTCTTCTTTATCTTCTCAGAAATTTGGTTCACTCTCTGCG CTAGATGCAAGGCCAGGATCTGCTTCCAGTAGGCTGCCTGATGACTTGGA GGAAGGAGAAATTGCCCTCTCCGGAGATTCTCGGGCAGACCGCCGGCATT CTGGTAGTTGGATCCATGATCGTGATGAAGTTGAGGATGAACAAGTTGTG CAACCTAAAATAAAACGAAAGCGAAGCATCAGAATTAGACCTCGACTTAC AACAGGAAAGCCAGAAGGGAAAACTGGTGAGAAATCATCTCTCCTTCGTG GTGATTCCTCTCAGATACCACTGCAGATGGGTCATAAATACGATAGAGAA CAAAATCTGGTCGTGGAGCCCAATTCTCTGAAGCTGGAAAAACGTGATTT ATCATTAAAGTGTAGTAGGGCTTTAGATTTACAGATAAAATCAAATTCTG GAAAAGTGCATGCATCACAAAAGCCTAGCAAAGTCAATGTCTTGTCTGCG CCTTCGGAAGATGCCACTGAACACTCCAAAGAAAGTCGGGATAGCAAAGT AAAGCATGGAGCAGGGAATTCAATTGGCCATAGAATGTCAGATGGAGTTC AGCGCAGGTGCAAGAATGTGATGAAGAAGTTCCAGAGGACACTAGACAAG GAAGGGCATCAAATAGTGCCACTTCTAACAGAACTTTGGAAGAAAAGTGA AGATACTGGTTACATGAGTGGGAACTGTCAGATTCATATACAAAAGATTG ACTATCAGCTTGAAAACTTTGGTTATAACGGAGTTATGGAGTTTGTTTCA GATGTGCAGCTTTTGTTAAAGGGCGCAGTTCAGTATTATAAGTTTTCCCA TGAGGTAAGGACTGAAGCAAGGAAGGTGCATGATCTATTCTTTGATATAT TAAAGAAGATTTTTCCAGAAACCGATTTCCTAGAAGCCAGGGGTGCTGTC TCTTTCTCGGGCCATGGAGCTTCTACTTCGGCTCCACCTTCAAAACAAAT TCTTGCTGGTCAAGGCAAGCGAGCTAAACAAGCTACCATGGTGGATCCTG ATCGTAGCCACAAACAGAAGCCGCTTTCTCGTGGGCTTAGTAATGAAGAC ACTCGGATTAGAAGTCACATGCCTCACAAAGAGACAAGGCTTGGAAATAG CAACAGGGAGCTAAACCAGCAAGAAGATTCCGGTCTCTTCTCTCATCCAG GAGAACTTGTCATATGTAAAAAGAAGAGGAAGGATAGGGAAAAGTTTTCC GTAAAGTCGGGAAACGTTTCTGCTGGCCCAATGTCACCTGCGAGTGTTGG CGGTAATATTAGAAGCCCAAGCTCAGGCTCACTGTCAAAGGATACCAGAT TGATTCAGCAAGGAAGGGATAATCAGCCTCCTCATCAAGCAAATGTCAGT AGCAGCGGAGGCATTGGCTGGGCAAATCCTGTGAAAAGAATGAGAACAGA TACCGGAAAACGGCGCCCCAGCCATTTGTAA
Pep:
>DCAR_025198pep MAGTRRRLPPNRRRLRRPPFRINTDPTSHIPLVNQSFHQQLLRKPDGTEA MLGFQGGLHGELGGNIGSNSGSMLVQPRSREETHNRNHGFDLQMLNPAQH SYLQYHSAQQKSAPGMQSQHPSKLGMAGPSVQDHDMRMGNIQMQDLMSIQ ASALLSNKKPEHFGHDEKLSEEQRSDSKPPVQTSLGQLMPGNMTSPMQIP QYQQNIQNMGNQFAMAAQMQTIQALALDRNIDISVPANANFMAQLMQMQS RIAPQHNKPNETNLGEKSLSVTMPKQQVTSPQVANESSPRGCSSSDVLGH SSSAKVMKQTGQPGLFCASTASLVPNANNHPLQTFSAHSSDSQLLSRQRT MIDNGVPPMHTPQSYVNQNQQVDAKPIQRSSPLSAASPSEGGLVNPSFQG GPLTHLPQQLGFTKQQLHVLKAQILAFRRLKKGDGTLPHELRQAIAPPPL DEQMLQASQPGPTDASGGRNVRMEDHIKRVECSEKDLPTFSSNDRLSNVK REAVAEDEKRNSSRQIVRAVLKESPSAPPQEEEHQTTISSAKVEEEDHGI QGDGIARSDVHVDKGKAGSSVAPLSETVQVRKPFQVSTTPQPKDTGPTRK YHGPLFDFPFFTRKQDSYGSAATVNKHNNMTLAYDLKDLLSEEGKEVLIR KRTKNIKKIGDLLAVNLERKRIRPDLVLRLQIEEKKLRLLDVQARLRDEV DQQQQEIMAMPDRPYRKFVRLCERQRADLSRQVQASRKAIREKQLKSIFQ WRKKLLEAHWAMRDARIARNRGVAKYHERMLREFSKQKDDGHNQRMEALK NNDVERYREMLLEQQTSIPGDGAERYAVLSSFLSQTEEYLHKLGSKITAT KSQQEVEEAANAAAAAARAQALSLSLPPSLCGLSEEEARAAAACAGEEVG LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP NAVLVNWKSELHNWLPSVSCIYYVGQKDQRAKLFSQEVCAMKFNVLVTTY EFVMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG TPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQREGPAHNVEDDWL ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIILRCKMSAMQGA IYDWIKATGTLRVDPEDELLMSQRKPMYQAKNEEQAVARAHRIGQKREVK VIYLEAVVDKIPSYQKEDDYRKGGMVDSEDDLAGKDRYIGSIEGLIRNNI QQYKIDMADEVINAGRFDQRTTHEERRLTLESMLHDEERYQQSVHDVPSL QEVNRMIARSEEEVELFDQMDEEFDWEEEMTRYDQVPKWLHASSKEVDDT IAKRSSKKKSLLGGNIGVESNEITSEVSTQLEKKRERNKAKKFPVYTELD DDFFEESSEERNGHSGNEVEVEDLEDDDFVDSGDSPPGNKDRLEDGSLTA EVSEDPRPLESHKPDHTPEKAGSSGSSSGNRRLIQMASSLSSQKFGSLSA LDARPGSASSRLPDDLEEGEIALSGDSRADRRHSGSWIHDRDEVEDEQVV QPKIKRKRSIRIRPRLTTGKPEGKTGEKSSLLRGDSSQIPLQMGHKYDRE QNLVVEPNSLKLEKRDLSLKCSRALDLQIKSNSGKVHASQKPSKVNVLSA PSEDATEHSKESRDSKVKHGAGNSIGHRMSDGVQRRCKNVMKKFQRTLDK EGHQIVPLLTELWKKSEDTGYMSGNCQIHIQKIDYQLENFGYNGVMEFVS DVQLLLKGAVQYYKFSHEVRTEARKVHDLFFDILKKIFPETDFLEARGAV SFSGHGASTSAPPSKQILAGQGKRAKQATMVDPDRSHKQKPLSRGLSNED TRIRSHMPHKETRLGNSNRELNQQEDSGLFSHPGELVICKKKRKDREKFS VKSGNVSAGPMSPASVGGNIRSPSSGSLSKDTRLIQQGRDNQPPHQANVS SSGGIGWANPVKRMRTDTGKRRPSHL*