DCAR_002964

Resource Type: 
Gene
Name: 
DCAR_002964
Identifier: 
DCAR_002964.gene
Locus Tag: 
DCAR_002964
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_002964, is a part of gene, DCAR_002964.
The genetic_marker, MK005886 K3330, is located in gene, DCAR_002964.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_002964DCAR_002964.mRNAmRNADCARv2_Chr1:34416327..34426374
Sequence: 
TAACAGCACAGAACTTCAGATAAACATATATAAATATTTTAACGAGATGT
GACAAGAAAAAACAATAATATGTGTCCGGCAAAGTAATAATAATAATAAT
AATAAAATAACTGAACAACCCGAAAAGAATTGGTATAATCTAAAACTAGA
ACGCAGCAAGCCTTTTACCAGCCTCCGATCACGATTCCAAGTCCATTTGA
CACAAAAAACATGTACAAGAATGCACACACGACACTTCGATTTTGACTTT
TCTCTGCATCAATAATTTAATCACCATTTCTTGAACATTTCTCTCCTCGG
AACACAGCGGATGAAATCGAGATCGAAAAGTGATCAGATTCATTGAGTGA
TGGGTAAATTAGGCGTCTTGTTTCTAGTAGGCGTGTTTGTGTTGGTTTTA
ATGGTGAAAAAGGGCTGGGCTGAGGAGAAAGGGAGGAGGATCCATACATT
GTTTTCTGTGGAGTGCCAGAACTACTTCGACTGGCAAACAGTGGGTCTGA
TGCGGAGCTACAAGAAGGCCCAACAGCCCGGCCCAATTACCCGGCTCCTC
AGCTGTACTGATGAGGAGAAGAAGAGCTACAGAGGCATGAATTTGGCTCC
CACTTTTGAGGTTCCTTCTATGAGTAAACATCCTAAAACTGGAGACTGGT
ATTGCTATTATTACCCTCTCCTGTTTGCTATTTTTTTTTTTATTTTTCTG
TGTTTTTATTTTTATTTTTTTTTATGTCTAGGTATCCTGCGATTAATAAA
CCAGCTGGGATTGTTCACTGGCTGAAATTCAGTGAAGAAGCAAAGAATGT
GGATTGGGTGGTCATACTGGATGCTGATCAGATCATTCGAGGACCTATCG
TCCCGTGGGAACTTGGCGCTGAGAAAGGGAGGCCTGTTGCAGCTTATTAT
GGGTATTACTCGCTGTCTTAGAATGTTGTCTTGTGCATAGTTTATATTCT
TACAAATCTCGCTTTCTTTTTGGAAAATAGTCCAGCTTTCTCATTAATGT
ATCATGTGTAGAGTAGGTTTTTCTGTAAAACTATTGTACCACCAACAAAA
AGTTAGCGTCCAATAAGTACTTAAATTTATCTAACAATTTTGAAAACAAA
AATTCTATTACTTCACCCAGTTCTTAGGAATTAATATGAAAGCAAACATT
GGTATAATTTAACAAAGAAGTTTAATAAATTTGAGATTTATTAATGTAGA
AACAAATTAGATTATAAATTAAGTTATTAAAAAAATTGATCAACCCCAAA
CACAAAGTATCATTTGATTTCATCTCATGTTTTATCAAATTTATCATGTT
CTATATTTATTTAACAAAATAAGTGGTTCTAAAAGTAACTGAAACTATTC
ATATTTTACAAGAATTATATTAACAATTTTTTTTTGTTTTAATGAACACA
GGTATAAAATTATAATGGAAAAATAAATTCTTTCATCCCTAAATTATAGC
CCGTTTATGGTTTAAGTCCCGTACTATAAAATAAGATGTTTGGGCGCCTT
AACTTTCAAATAATCTGATTCGTGTCCCTCCGTCCAAATGTGACTAACTG
ACGTTAGTCAATGCTGATGTGGCAATCAAAATTTCACGGATTGAAATCAA
ATTTTGATATGTTAACGTAGGAGTGATTTGAAGAACACGTAAGCTGAAAG
TTTTCAATTTTGAGTTCACGATCGTATAGAAATCTGTACTTTAATCACAA
GAACACGAAAAGAACTTATTAAATCCAGATTTTTTTACGTTAGTGAACCC
AAAATCATAAACTTTCACCACTTGTGTTCTTGTAACCACTCCTTGTTAAA
CATATCCGAATTCACTTCAATATGTGAAGTTTTGATTGTCACGTCATTTT
TTTTCCCAATTGCCAAGTCAACATTGACTAACGTCCGTTAGTCAAATTTG
GATGGAGAGACACGAATCAGAAAGTTTGAAAGTTAAGGTACTGAATTTTT
TTAATTTATAGTATGAGAATCAAAACTATAAGCGGCCTAAAGTTTAAGAA
CGAAATATTTTATTTTCCCAAATATAATTAAACCAAAATCAGGTTAAAAG
ATATCAGTATAAACAGAGATGACCCAGTAGTACTTTTTACATTAGTGTTT
TAAGCCGTGTTTCATATTTTGTGAGAGTAGACATTGGTGTTGTGTTTAAA
ACAGAAAAGCAAGAAACTATTCAGGATAGGTTTTCACAATTTTCCAAATT
TCAGCTATAATTTATAACATTGTGGGAAACACGGCTGTATAGTTTTTTGA
ATTTTCAGTTGAGATTTCAACATGTCTTGAATTCCTACTTCGATAAGAAT
TTTTTTCCAGAAACAAGGTAACTAAACAAGGTCTTAGGTTTGCTGATATA
GGAGGTTTGAGATGGTCATAATATATTATGTTTGAATAATGTCTTTTTCA
CCTTGTAGATGTCAGGAACATAATTATGAATGTATTTGAAGCAGTGGTTA
AACAACTATACTTATCTTTTTCTTTTCTCTGTCACTAATTTGTTTAAGAG
ATCTCTTATTTGTGCTCTGTGATAGTAAATTATAAATTAAGTCTTCTAAA
ATCGAAATTACTGTTTTGCTTTATATTACCAACCTTATCCTCATTCATCT
CCATAAGATGTGCGCTTCGTCTGCAGGTACTTAGTTGGCTGCAATAATCT
TCTTGCAAAATTGCATACTAAACATCCTGAACGCTGTGATAGAGTTGGTG
GGCTTTTAGCCATGCACATAGATGATCTTCATGCTTTGGCACCCATGTGG
CTTTCTAAAACAGAAGAAGTACGAGAAGATAGAGCTCACTGGACCACAAA
CTTGACCGGTGACATTTACGGGCAAGGTTGGATCAGTGAGATGTATGGAT
ACTCCTTTGGCGCAGCCGAGGTAAGTTGCATACCATATATCTCTTTTTTC
CATTTAAATATACTTTTCACGGATCTTTACCTTCCTCTGTATATAAGATC
TTCTTTGAATGGTCTCCAATATTCTTTTTCAGGTGGGACTTCGCCACAAG
ATTAATGATAACTTGATGATATATCCTGGTTACATTCCTCGGCCTGGCGT
TGAACCCATTCTTTTACATTACGGGCTGCCATTTAGTGTTGGTAATTGGT
CATTTAGTAAACTGGATCACCATGAAGATAATATTGTGTATGATTGTGGA
CGGCTTTTCCCTGAACCTCCTTATCCTAGAGAGGTACAAAAGCTTCTCAT
TTACTCATATCAGTGAACTCTGTATTTATCTATATGGATATATTCAGTCT
CATTCTGTCTCTTTATCCATTTTAGTTTATCTAAAACTCTGAGTTAACTA
TGAAAATTTTGTTTTACTTGTAATTAGTTACAGAAATTTTATAACTAAAC
TTGAGGTTGCTGCACTAAATTAATGGGGACCCACCTCAAGCTAAGATGAA
TATTGCTTTAAAAAGTCAACTTGAAGGCAATTAACTTATATTTTGAGTGT
ATACATGATAACATGTATCTCAATTGACATACCCAAAGAACTAGGGTCCA
GAGGGAAAGAAGTGAAGTTAAATATTTGAGCTTCACGCTCTAAACAAAAT
AGACTAAACTAATTTTTATTAGTTTTAAAAGAGCATATATGAAGTTAAAA
AATCTGAAAAGAAATATCTAGCTGTTATAGTATAACATAGATTAAGTTTA
TTAGGGATGTTCTCCTTCAAAATTCCTTTAAATATCATTGTTAAAAGTTT
TCGGCAGAAGGTGATTAATAAAAATACCTTACCGAACATTCAATTTTATG
CTACACAATTATTGTTCGTCAGCTGTCGTTGATCAGCTATAGAATAAATA
TTCAAAGAAACATGCAATAAAATTAATGCAGTAACAAGTAAATAGTGAAC
AATAACCTTATAAAGATCTTTGATTCACTGAATATCACCTTTTACACTTC
ATATAGGGAATAACCCATCGCTGGAAATAAAATTGTGATATAACCATTAT
CTGGTTAAGTGGGATGAACTATATCACAGTAAAGAGTGCTTCAAGCAAGT
ACCTTTCCAGATATTCGTTCTCTGCTAGTATTGGTAATTAAGGTTAATGT
TGTACTAACTACTAAGGGACTATTTGATAAATTCATGTATAAGCTGAGAA
AACAGTTATGATATATCCTTATATATAACAAGCGTAAGGACGATAATTTG
GTTGTTTGGTATAGTATTGTTGAACAAATATGAACCGTTAGATCTTATTA
TTTGATAAACAGTTGAGATTACATAATAATATTTATATAATATCTAAATA
TAGCATAAAAATTCATATATCGATGCGATATCAAATATAAGTAGGTTTTA
AATAAAATACGTGTCTTAATAAAATACATTCCTTATTCTTTTTATGTTCT
CAACAAAATAGAGTTAGGTTTAATAAAAATCAAATAAAAGTTGTTTTTGT
AAAATTCAGATAGAAGTATGTAATTAGAATATGACTTATTCTTTATGTGT
TCTAAATACCATAGTATAAATACGAATCGTTATATCTTATTATTTGATAA
ACGGTTATATTCATAATAACAAAGATATTTTTATATGATATTTAAATGTA
AATAATAATTTATATTTTTGATGATCTAAATAAATTTGAAGAAGGTTTTG
TAAATAGAATACATCCCCTGTTCTTTTTGTGTTATAAACAAAACATAAGT
ACATTTTATAAAAATCGAAAAGAAAAAGGTTTTGTGATTAGAATATGACT
TTTTTTCTTTTTTTGTTTAAAACCAAATAAAAAAGATTCTTTAAATAGAA
TATGATTCTTATAATAAAATTCATAATTATTTTCTCATTTCTATTTGAAA
ATCTCGACTCTAATCACGTATAAATCAGCGTATAAAAAATTAGTAAGACG
ATTCATAAAGTAAATTAAATAATAATATATTATAATTCTTTTTAATTTAA
ATAGAATATGATTCTTATTATAAAATTTATAATTATTTTCTCATTTCTAT
TTAAAAATCTCGACTCAGCGGATAAAATATTAGTAAGACAATTCATAAAG
TAAATTAAATAATAAAATATTATATTAAATATATCAATATGAATATATAT
TTTAAATATTATATTAAATATATTTTTTAAAAAAATATCTGTAAATCATA
CTAATTATTAAAATAAACTTATATTTTCAAAGAGTATCAATGCATGGCAC
GAGTTATAAACTAACACAGTATAAATAAAGCAGTTAGCAATGGATGACAA
CCATGCGTGTTTTTTTTGTTGGAAATCACATTATACTCTTCATATACATT
AGGTTAACTAATTGTTGCAACCTTGATAGGTTATGTATGATGTACTGAGC
ATTGCAGTATTATGTTCTAAATTCTAATGCGGTTTAATGAACAATAAAAC
AAGAAGATAACAAATAAATCTTTCTGCAGGTGAGAGCAATGGAAACTGAT
CCCGATAAAAGGAGGGCTCTTTTTTTGAATATAGAATGTATTAATACCCT
CAATGAAGGTCTACTGTTACAGCATGCAGCAAACGGTTGCCCTAAGCCAA
AGTGGTCCAAATACTTAAGCCTCTTGAAGAGCAACACCTTTGCTGAACTG
ACTCGTCCTAAATATCTTACTCCAGAAACTCTGCAGTTGAAGGTGGTTAA
GGTCCAAAATCAGGTTTTTGATGAACCTGGGAGGCCACATCCAAAAATTC
ACACCATATTTTCCACAGAATGTATCCCATATTTTGATTGGCAAACTGTT
GGACTTGTTCATAGTTTTCACCTGAGTGGCCAGCCTGGAAATATAACCAG
ACTTCTAAGTTGTACTGATGAAGATCTGAAAGAATATAAAGGCCTGGATC
TTGCCCCCACACATTTTGTCCCATCTATGAGCCGGCATCCACTAACGGGC
GATTGGTAGTTCAACATCTCTGTTGCTTATTTATCCTTTTTCCTTTTTAT
AGACCAGTTTGATATTTATTACCCCCTCCGTCCCACTCATTTTTATACGT
TTTTTTTCACTGCTCGGCACGCACTTTACTGCTTATATAAGTATAGTCCT
ATAACTTATTTTCGAAATTTTCTTTTTCTGCAAAAAATATAAATATCAAA
TTGTTATTTAGAAAAAGAAAATCTTAAAAATAAGTGATAGAACTATACTT
TACAGGAGCATTAAAGTGCGTGCCACGTCCCCGGCCCCCAATGTATACAA
TTGAGGGGGAATGAGGGAGTATAGCTCTGTACTAGAATATTATTCCTTTT
TTTCCTTCTGGAATCCTGATCTTTTGTTACTTGTCCTGAGTTGGCAAGTT
TATTCAAGTTGTCATATTTACTATATGCGAGGACTGTGTAAAAATGCATT
AAGAATTTGTATATAAATGACTACCTTTATAGAAACTGAATCTATAGATA
CCAAGCCTGTGTTTTGTGATGCTTGACGGATAGTTATGCACTGACAAAAT
AACTGTATACCATATGCTTTATGTCATAGTATAGAGGAAGAAATGTCTGT
ATAGGATAACCATGATCTACCTTGTCTTGATACATTCTTGGCATTTAAGT
GTCTTCTACATCATGTAAATTAACCCTGTCATAACTTTGGCAGAAAGTGG
AGAACATATACACATTATAAGAAACCTTGATCTAATGTCTGTTGTATCAG
GTACCCAGCAATCAATAAACCAGCTGCAGTCCTGCATTGGCTGAATCATG
CAAAAATCGATGCAGAGTTTATAGTTATCTTGGATGCAGACATGATCATG
CGAGGAACGATTACACCATGGGAATTCGATGCAGCACGTGGTCGACCTGT
TTCCACCCCCTACGAGTAAGAATAAATGATGTTTTCAAATAAACAGTTAA
TTTATGTTAATGTCTCGACAATTGACATTTTTACCTGCACGTAGACTGTA
CCCTCTTAGTGGTTTCTCAACTTGTACGCAAGTGCACCTATTACAATTTA
TTTTATTTTTTTTGCCAAATCAAGTCAAAATACACTTTGGTTTAATAACA
AGACAAAATAACTATCATTCAAGATTGAACTAGCTCAAATATAATTCCAA
GATCAACAGAAGTAGGCCATTATCTTCATCTCGTCAATAAGTTATTGTCG
TGTCTTTATTTCAATTCTCAAATTGCTAGTCTAAGGTCTTAACTAATCAT
GAGGACTTTCATAATCCCAAGTGATCCTAATTCATCAACCAATTACCATA
TTCTCACGAATATTTTAAGTCTCTGAACAACAATGTGATCTATTGACGAC
GACTACTACTAATTGGGGCGTTTTATTATATCACACACTGTTTTATTTAT
TGTGCACTAAGCCGGGGGTCTTTACGGAAATAGCCTCTCTACTTTAAGGG
TAGGGGCATGGTCTGCGTACATCTTACCCTCCTCAGACCCTGCTCTAAGC
GGGATATACTGAGTATGTTTGGTTTGGTATTAATCCCAAGTTTTGTGGTC
TTAATTTAAGGTTTCTCTGTAATTAACAATCCCATTTCAAGGTTGACACT
AGTTATAGATCACTATAAGCAATCGTAATGAACACCAAAACAGAGAATCA
ACAATTGTTCATAAATGACCACCATAATCCATTAAAGGCCCATATACAGA
ATCAGTTAACATCACACCGAAAAGTGCTCTACAGAAGTAAAAAGACATAG
AATCAAAGTTAGACCAATAAAAGTGAGGAAGAAACGATGAAACTCTTAAA
TAATCTTCTTTTGATGGCTTTCCTTTTGTACTTTCTTGTGTTATCCTTCT
TAGTTGTAACTGCTCCTCTATTTAAAGTAACGTGTGGTCTATCTCATTGT
TCCACAGCCCAAAAACATAATTCTACCAAACTATATCTGAATAATATAGT
ATTATATATGAACAATGATGACGATGATGAAGATGAGTTTTCTTAATAGA
AAATTTTTTTAAAGAAGAAACTTTGAGCAGCCTGGTTCCGGAACTCCACG
TAAGCTTTCCAATGACACCTGAATCGCCTCAAACGGACATTCTCCTGTTA
TGGTAAAAAAAAACAATGAAAATTGCGCAAGTATTCGTTTATGCAACATT
TTATCCAATTATTTTGTGATAAGAATTAGGTGGGGCAATTTCAACCCGGT
TTTGTTTTTTAGCCAACCCGAACCCGAAACAAGTTAAAATTTCAACCCTA
ACCCTACTTGCTACGTACCCCAGTCAACCCGAAAATTACCCATGTTGACC
CGAATTTGTGTAAAATTAAATATTTTAATTATATAAATTCATATATATTT
ATAATATATTAAATATGTAAAATGGTAATTTACTTAGATGATATATGAAT
TAAGTTATTTAGATAATATATAAATAGATCATAAATGTATGAAATAATGT
AATATAAAATTACATATTATGATCAGGTAGTCTGGGTCAACGTGAATCCA
ACCCGATTTATTCGGGTTAAAATTTACCCAACCCGAAACACAAAAACTCC
AACCCTAATTTGTATTTTTCGAGTCGGGTTCGTGTCTTGTCGAATTTTGC
TACCCTGATTAAGAAACCCTTGTTTCCTACTAGAAAAAATAAGATTTATA
CAATATTAACTAAAAATGTGAGGAAAATTTAATCATATATCATATTCATA
CACTCTTTAAAATGAGATAACTGTCAGTAAACTTGCATATTCATGTTTGC
AGCTACCTTATCGGTTGCCACAATGAGCTTGCGGAGCTCCACACTCGGCA
CCCTGAAGCTTGTGACAAGGTTGGTGGTGTGATAATAATGCATATAGATG
ATCTGCGGAAGTTTGCGATGCTGTGGCTGCATAAGACTGAGGAAGTCCGT
GCTGACACTGCTCATTATGCCAAAAATATAACTGGGGATATATATGAATC
TGGATGGATAAGTGAAATGTATGGTTACTCTTTCGGTGCAGCTGAGGTAC
TTCACTTGTTAAATTCTTTTTTTCATGTTAAAATTGCTTCATGTATCATG
TGCGTCTTGTTCAATGTCCCAATGTCCTTAAGGTCGGGTTATCAGGAATT
TAAATTTATCGTTTCAAGTCCAGCGAGATATTTGATCCATTTTCATCTTC
GTGTCATCGAGTTTTTCTGGCGAATTCGTAGGTTCAATTCCTACTGGATG
CACGCCAATGGGACCCTCCAATAAGTTTTGTTGAGTAAAAGTATATGATC
CATTTAAGACATCGGTATGATTATGGGAGAGGTTGATACTTAACCACGTA
ACATGGTATCAAAGTCCAGGTTTGGCAGAGGGTCTCTGGTGCGAACCCTG
CCACCCTGAATATGTATTCAATTTTGTGTTTGTTGCTTTACATTGTCGTC
TGTTTGTTCACCTGTTCTAGTAGTGGGGATGTTTAATATAGTATATGATT
CATTTAAGGCTTTTTTTTTTAACACCATAAGGTAATGAGAGAGTTAGTTA
AATAACAAGTTTGAATCCTTACTGTCCGATCATCCTGAAGTTTAACAAAG
TCGACCAACGTTGATTAATGCCCATGTTAGGGTTCTTTAAAAAAAACCGG
AGGTACTAAGAGGGTGTTAAAATGTTTGATATTTGTATATGTAAATCTGT
TTGTGTGCATGTTTGGAATGGATTAACTTGTGATAACTTAAGGTTCTAGC
TTTGGATATATCGGCCAATAAAGACATTTCTTTTTTACCATTTAAATTAC
CAGACATCTTGTAATCTACTTCTGGAATCCTGACTTTGTATGACCTGGTG
TGTAGGGACTAAATTATAATCATATTATTTATTTGTTTGATGGAGTGAGA
TTTGTTTTGTTCAATTTTCTTGTGCAGCTGAATTTGCGGCATAATATCAA
CAATGAGATATTGATATACCCAGGATATGTCCCTCAACCTGGTGTCAAGT
ATCGAGTTTTCCATTATGGCCTGGAGTTCAAGGTTGGGAATTGGAGCTTT
GACAAAGCAAACTGGAGAGATGTTGACGTAGTTCACAATTGTTGGTCTAA
GTTTCCTGATCCTCCTGATCCTTCAAGTCTTGATCAAACTGATGAGGATA
GTTTACAGCGTGACTTGCTTAGCATAGAATGTGCAAGGACATTAAATGAA
GCTCTACGTTTACATCATGAAAGAATATGCTTCAAACCCAATTCTGTGTC
CAATTCCAACTCAACATTGAACAATGAAGTAACAGTTTCAAGAAAAATTG
GCAAGATTAATGAGAGTCATACCATAAGAAGTAACAGTGTCCCCATGAAT
AATTCTCGAGAATCATCATACTCAGTGGAGGATGAGCAGATGCACCGTTC
TTTCAGGGTTTGGATAATCTGTCTCTGGGTATTTTCTATATTTGGTTTTG
CGGCTGTAATCTGGATACTGTTTGCAAGTCGTAAAAGACAAAGAAAAAGA
GGTAAAAGCTATAAAAGCAAGAGAAGACCATTGTACGCAGGATTTGGGGA
CATAAATGGACTTGAGAAGCATATGAGAGGGGTTGAGATATTGTAGAAAT
ATACTGTTCTGGTAATATCTGTAAAATACAACTAGCCACCATAGATATAC
TGCAAGTGGACAGGAATCTAAGAATGAATGCATGATGATGATGAGCTGAG
ATTAAGAGATACATTGGCGTTCGCCAATGTCAGAACTGGAACTTGCAGAA
CCGTACATGATAAGTTAACATTCAATAAGCTCTTGGGCGGCTTGCTTTTG
CCACAGAAGAAAGCTGCCATGATTCAGTGGCAGTAGCCAGTTTTTTGAGC
TGCTAGGGCCCCGTGTTAGAGTAATACATAACATTGATTATGATCATAAA
TATTAGATGAAGTTTTGAGTCCATTAGTTTAAGGT
Sequence Length: 
10735
Sequence Checksum: 
6d9efb8059f9fb04e1fdb4e7e6682aec
View location in JBrowse: 
Cds: 
>DCAR_002964cds ATGGGTAAATTAGGCGTCTTGTTTCTAGTAGGCGTGTTTGTGTTGGTTTT AATGGTGAAAAAGGGCTGGGCTGAGGAGAAAGGGAGGAGGATCCATACAT TGTTTTCTGTGGAGTGCCAGAACTACTTCGACTGGCAAACAGTGGGTCTG ATGCGGAGCTACAAGAAGGCCCAACAGCCCGGCCCAATTACCCGGCTCCT CAGCTGTACTGATGAGGAGAAGAAGAGCTACAGAGGCATGAATTTGGCTC CCACTTTTGAGGTTCCTTCTATGAGTAAACATCCTAAAACTGGAGACTGG TATCCTGCGATTAATAAACCAGCTGGGATTGTTCACTGGCTGAAATTCAG TGAAGAAGCAAAGAATGTGGATTGGGTGGTCATACTGGATGCTGATCAGA TCATTCGAGGACCTATCGTCCCGTGGGAACTTGGCGCTGAGAAAGGGAGG CCTGTTGCAGCTTATTATGGGTACTTAGTTGGCTGCAATAATCTTCTTGC AAAATTGCATACTAAACATCCTGAACGCTGTGATAGAGTTGGTGGGCTTT TAGCCATGCACATAGATGATCTTCATGCTTTGGCACCCATGTGGCTTTCT AAAACAGAAGAAGTACGAGAAGATAGAGCTCACTGGACCACAAACTTGAC CGGTGACATTTACGGGCAAGGTTGGATCAGTGAGATGTATGGATACTCCT TTGGCGCAGCCGAGGTGGGACTTCGCCACAAGATTAATGATAACTTGATG ATATATCCTGGTTACATTCCTCGGCCTGGCGTTGAACCCATTCTTTTACA TTACGGGCTGCCATTTAGTGTTGGTAATTGGTCATTTAGTAAACTGGATC ACCATGAAGATAATATTGTGTATGATTGTGGACGGCTTTTCCCTGAACCT CCTTATCCTAGAGAGGTGAGAGCAATGGAAACTGATCCCGATAAAAGGAG GGCTCTTTTTTTGAATATAGAATGTATTAATACCCTCAATGAAGGTCTAC TGTTACAGCATGCAGCAAACGGTTGCCCTAAGCCAAAGTGGTCCAAATAC TTAAGCCTCTTGAAGAGCAACACCTTTGCTGAACTGACTCGTCCTAAATA TCTTACTCCAGAAACTCTGCAGTTGAAGGTGGTTAAGGTCCAAAATCAGG TTTTTGATGAACCTGGGAGGCCACATCCAAAAATTCACACCATATTTTCC ACAGAATGTATCCCATATTTTGATTGGCAAACTGTTGGACTTGTTCATAG TTTTCACCTGAGTGGCCAGCCTGGAAATATAACCAGACTTCTAAGTTGTA CTGATGAAGATCTGAAAGAATATAAAGGCCTGGATCTTGCCCCCACACAT TTTGTCCCATCTATGAGCCGGCATCCACTAACGGGCGATTGGTACCCAGC AATCAATAAACCAGCTGCAGTCCTGCATTGGCTGAATCATGCAAAAATCG ATGCAGAGTTTATAGTTATCTTGGATGCAGACATGATCATGCGAGGAACG ATTACACCATGGGAATTCGATGCAGCACGTGGTCGACCTGTTTCCACCCC CTACGACTACCTTATCGGTTGCCACAATGAGCTTGCGGAGCTCCACACTC GGCACCCTGAAGCTTGTGACAAGGTTGGTGGTGTGATAATAATGCATATA GATGATCTGCGGAAGTTTGCGATGCTGTGGCTGCATAAGACTGAGGAAGT CCGTGCTGACACTGCTCATTATGCCAAAAATATAACTGGGGATATATATG AATCTGGATGGATAAGTGAAATGTATGGTTACTCTTTCGGTGCAGCTGAG CTGAATTTGCGGCATAATATCAACAATGAGATATTGATATACCCAGGATA TGTCCCTCAACCTGGTGTCAAGTATCGAGTTTTCCATTATGGCCTGGAGT TCAAGGTTGGGAATTGGAGCTTTGACAAAGCAAACTGGAGAGATGTTGAC GTAGTTCACAATTGTTGGTCTAAGTTTCCTGATCCTCCTGATCCTTCAAG TCTTGATCAAACTGATGAGGATAGTTTACAGCGTGACTTGCTTAGCATAG AATGTGCAAGGACATTAAATGAAGCTCTACGTTTACATCATGAAAGAATA TGCTTCAAACCCAATTCTGTGTCCAATTCCAACTCAACATTGAACAATGA AGTAACAGTTTCAAGAAAAATTGGCAAGATTAATGAGAGTCATACCATAA GAAGTAACAGTGTCCCCATGAATAATTCTCGAGAATCATCATACTCAGTG GAGGATGAGCAGATGCACCGTTCTTTCAGGGTTTGGATAATCTGTCTCTG GGTATTTTCTATATTTGGTTTTGCGGCTGTAATCTGGATACTGTTTGCAA GTCGTAAAAGACAAAGAAAAAGAGGTAAAAGCTATAAAAGCAAGAGAAGA CCATTGTACGCAGGATTTGGGGACATAAATGGACTTGAGAAGCATATGAG AGGGGTTGAGATATTGTAG
Pep: 
>DCAR_002964pep MGKLGVLFLVGVFVLVLMVKKGWAEEKGRRIHTLFSVECQNYFDWQTVGL MRSYKKAQQPGPITRLLSCTDEEKKSYRGMNLAPTFEVPSMSKHPKTGDW YPAINKPAGIVHWLKFSEEAKNVDWVVILDADQIIRGPIVPWELGAEKGR PVAAYYGYLVGCNNLLAKLHTKHPERCDRVGGLLAMHIDDLHALAPMWLS KTEEVREDRAHWTTNLTGDIYGQGWISEMYGYSFGAAEVGLRHKINDNLM IYPGYIPRPGVEPILLHYGLPFSVGNWSFSKLDHHEDNIVYDCGRLFPEP PYPREVRAMETDPDKRRALFLNIECINTLNEGLLLQHAANGCPKPKWSKY LSLLKSNTFAELTRPKYLTPETLQLKVVKVQNQVFDEPGRPHPKIHTIFS TECIPYFDWQTVGLVHSFHLSGQPGNITRLLSCTDEDLKEYKGLDLAPTH FVPSMSRHPLTGDWYPAINKPAAVLHWLNHAKIDAEFIVILDADMIMRGT ITPWEFDAARGRPVSTPYDYLIGCHNELAELHTRHPEACDKVGGVIIMHI DDLRKFAMLWLHKTEEVRADTAHYAKNITGDIYESGWISEMYGYSFGAAE LNLRHNINNEILIYPGYVPQPGVKYRVFHYGLEFKVGNWSFDKANWRDVD VVHNCWSKFPDPPDPSSLDQTDEDSLQRDLLSIECARTLNEALRLHHERI CFKPNSVSNSNSTLNNEVTVSRKIGKINESHTIRSNSVPMNNSRESSYSV EDEQMHRSFRVWIICLWVFSIFGFAAVIWILFASRKRQRKRGKSYKSKRR PLYAGFGDINGLEKHMRGVEIL*