DCAR_002969 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_002969

Identifier:

DCAR_002969.gene

Locus Tag:

DCAR_002969

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_002969, is a part of gene, DCAR_002969.
The genetic_marker, MK010716 1_34478422, is located in gene, DCAR_002969.
The genetic_marker, MK009392 1_34478473, is located in gene, DCAR_002969.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_002969	DCAR_002969.mRNA	mRNA	DCARv2_Chr1:34469626..34479093

Sequence:

ATGAGGGAGACAAATGCAATACTTTGCCCTAACAAAATAGGGTCTATTCC
AGGTATGATTTTTCAATAATACAATAGGAAATCAGAAATGTAGAATCTAA
ACATCGAACTTGTTTGATGATCCTACAGGTATCAACACGTGAATGGTGAA
TGTGATACATATTATCTTTCTTTGAGGGTTTTTAACATGCTCGTGCAACT
ACAGGGATTGAGGTCGGGAAACAATTTTTTTCAAGGGCTGAGATGGTTGC
TGTAGGTTTCAATAGCCACTGGTTAAATGGAATTGATTGTATTTCCCATG
CTGGTAGTGAGGTACATTTTAGAAGTAAAATTATGTCATAATATGGAATT
CATGTAGTTCTCTCGAACTTCTACTTTGGCTGTGGAATTTGCAAGCTAGT
AATCATCTCAGAGAATGCATATGCTTTGAATTGTATGAAGACTAATTAGT
TCAACATTTCTTGTCTGCAGTTGTCCCGTGCCTATAACTTACCAATTGCT
GTAGTGATAGTTATGTCAGGGCAGTATGAAGATGATCTGGATAACTGCGA
TGACATTGTGTATACAGGCCAAGGTGGTAATAAATTATGTGGTAACAGGC
GTCAATTCCGGGATCAAGTATTGGAAAAGGGTAATTTGGGACTAAAGGTG
TGACACCATCTAATCTACACTTTGCGGATATAGTGACATTTCTGACATGA
TTTTACCTCCCAGACATGTGAGAATTATAGCGTCAATTTTTTTTGTGATA
TGGTCAATGACACAAATTTGGATATATACAGACATGTATACAGCAAGGTC
AACCCTTGTTTGCTTGTTACTAAGGGAAGAGAAGAGGGTATTTGTAGGCG
AGCATGCTAGGGATATTGAGGATTATAGTAGCTGATTGCGCGTTACTTTA
AACAGTTAGTACAAAGATATCTAACATTTTAAGTTGACATCAGGTTGGAG
TGTTGTGGCATAGTGCTAGGGTCAGATAGAAATGAATTCTATTTGTGTCC
TATCCCCGATGGACAAAACACCCATTTTTTTGTGGTAGTGGCCGTACCTA
CCGATTATGTTGAAAATCACATTAACGAAGTTGCTCAAGTCATAGCTTGA
GATACACACCCTCTCGTCATAAAGCTATCTTTTACTTACTTAACACTCAT
CAAACAATAAGAAAGACTGCTCATATTTTGTTGGACAGTTGTATTGTAGT
TAAAACGGTCAAGTATATGAAATTGTCTAACTTGTCAGATGTAGTGAGTG
GACTACTCATATTTTTCTTCTCTATCTTGCAGAACAGTATGGATCAATGT
GTCCCAGTTAGAGTTGTACGTGGGCATGAGTGTAAAAGTAGTTACGTAGG
CAAGGTTTACACTTACGATGGCTTATACAAGGTAATCAGACAGTGATGTG
ATCTCAGTTGGTCTTTTTCCTGCCGCTTTTTGCTCGATTCCATTTATTGT
ATTCCTCACAGATTTAGTAGAAAACATTTTTTTTTCTTCTTCTACTGGAT
ACAATGCACGTGTCCAATAGAGTGTTCACAAAAGTATTCCCCTGCAATCT
TGCATGCATTAGAAAAAAACGTGGCACTACATCAGGTTTACCAACTTAAC
TAACAAACATTATATATATTGGGAGTGTTTCAGTGACCATATGGGTAGCC
TGAAGTAAGATTACTATACTGATACAAGTTTTTTGGCAACTAGCCAGTTG
TGAGAAAATTAGTAGCTAGTTATATGTGGATCAGTGCAAAACATGTTGCA
CCCAACGTGTGACTCTTTCTGAAGCTTTACTAGACAAGGAGCATTTTTAT
TGTTTGGGATATTGTTTCCATGTGCCAGTGTCATGTTTTTGGATCTTCTG
AATATGTTTATTGGCCTTCAATCAATGACTGATCATGCAACTATTGGAGT
TTTCTTCAGTCCACAACAGTTTTATTACATATGGCAAGACTTTTTATGAT
AATAAAATAACCACTCCCTCTGTCCCCCTAGGGTTTTTCCATTGGGGGAC
AGAGGGCTTGACACACATTTTAAGGCTCCTATAAAGTGTAGTTTCATTAA
TTATTTTAAACTTTGTTTCTTCTGAATTAAAATTTAATGTTTAAATTTTT
ATACAAAAAAGAAAATTTTAAAAATAAGTTGTGAAACTATATTTTAATAC
ATCTTAAATTATGTGCCAAATAGTGCAAAAACACTATAAAGAAATAAGAG
GGACGGAGGGAGTTCTAAACAATAAACACTTGGGTGTTAAGTACCATGGT
TTGTAGAAATTAAAAATAACTTTGATGACTGAATAGAAAATAATAAGACA
AGTACCTGTTACTGTTTTAGCTTATGATCTTCAAATTTTGGGATCAAACA
ACACATTCGTGTTGAAATACCTATTGTTCTATGTTTAAATATATATAGAA
TGATTTTTTACCATGAGCAACTCTTTGAACTTTTGTCATTCATGCATTGC
TCTTTCCTCGTGTTATATCACCATTAATGTTGTCATCACTATTGTGGGTC
TATGTACAGTGTTTAGCCAATGATGAAGGTAACTTATATGACCTAAAACT
TGGCACTGCTTATCTTTTTAAATTTTTTTATATAATGGTATGATGTGGTT
GTATTTCACTTCTGCACAACTGCTTTTAAATGATGAGCTGCTTTGATCTA
AGCACTACTAACTAGTGAACTACTGTTCTTTTTCATCACATACGCACTCT
GCTTGGGTTGGTTGAATGGAATGATAGATGTGAGAAAAAAGACTAGAGGT
GAGATTGAACAATAGCGGAGGGAGAGTGAAAATTTTGGCAGTGAATTTAT
TTTGAGAAGGTCTTTTGAAGGATGGGAAGTAGGGAATATATGTAAATTAA
TTCGTAATAAGAGGAGTGAGCTCTAGTTTCAACAGAAGAGAGAAAGAAAG
AAAAGTTGTACACTGTCTAGAAACTAGCTTAAATTTTATTTTCATTTATT
TTAAAGCTTGAAGCAACTGGAGTGACTCTTTGCTGGTTTAATTATTCTTA
GTTTTATTATTGCATCTTCCATTGATATTTGTCAATCGAATACATTTTTT
TTTAATATTTCTCCCAGTCCCCCCCTGAAGTGTCATCCATTGCTGTCTTG
GTTATCTTGCTTTTTATTAATATTTTGTAATTCCATATTATTTGTTGGCT
ATTAGTAAATGTAATAAATTTCCTTTTACTCAGATATGAAGCTTTTCTTG
CCCATACTCTATTTTTTATTTGCAGGTGGTTAGTTACTGGTCTGAGAAAG
GTGTATCTGGTTTTAATGTTTTTAAGTTTCGTCTGAAACGGCTTGAAGGA
CAACCCCTTTTAACAACGGATCAGGTTTTTTATGGTCTCACAATTATGTT
TTACCAGTGAATTATGTTTCTATAACTTGCATGCATTTACATATTACAAT
TTACAAAGGTGTAACTTCCAATGCTAGGCTGCCTCGCTTCATTTGTGACT
TAGTCTCTGCTGAAAAAAATGCCATCGAACCATATATATATATATATATA
TATATATATATATATATATACACACACACACATGTATGCATATGGAATGA
CAAAAAAAAAAGTCTACGACGACTAGTTAACAAGTTGAACCTGTATCGAC
TCTACTTGACTTACTGAGGAAATAACTATGGCTATCACCAAAGTTAGTTC
AGCATTCATTCTAGATAAAATTGACAGGAAAAGTTCACAGTTTCTATTTT
AAAATCTGCTTAGTGTAAAGGAAAATAGGTCTTTAATAACTTCAAAATTG
AGGGAAAGTGTTGGGCTCATCTATCAGTGGTTTAGGCTCTTGTCTTCCTA
CCATCTGGTGGGAAACAGGAAAAATTATGGTCAAATAATTTTCTTATATA
TTCTGGAAAACTGATGAAAGATTGCAGTAGTACAAATAGATCATAAGATT
ATCCAAAAAACAAAAGAAATCATTTGCAGAGAAAAAAATCCGAACAAATC
CATAAGCTCTACCTTCTGATAATCATATACCATCTTGCTATAGTATAGAT
ACCAAATGTAATCGAATTATAAATGATTTGTTGTTACTACCTGATTTTAC
TTTATCAAAGTCTAATTCACCAAATATGAATTTAAATGTAACAAAAAACT
GACTATTTGGAATTTAAACTACCTTAGTCTTTCGCACATGGTTGATTGAC
AACTTTGAGATTATAGAGTACTCTAAATGTACTTGCCAGTATAAATGATT
CTTTCAAAGTTGGTCAAATCAACTTGATAAAAAAAGTCAAATTTACCACT
TCTGTGGGATAGAGGGAGTATTTTATAACTAATTAGTAAAAACTTCGTTC
ATTACCCATCGCGAATGCTACATGATTTTTTGATCTGGCTGCCTTCAACA
CCATGTATGATATACAACTTTTGTTTTTGTTTGTGCTATGTTGCCATTTT
AAGTGAGTAAATATATATCATGTTTATTCACAGAAAAATTATCTTCTCGG
CAAGTGTTTTTATGTTCAGATGGTACTCTAGTTTCTGGCATGTGTTGGAT
GTTTCAGTGAATTCATTTTTCTTACATGCTTGACAGGTTCAGTTTGCTGG
TGGACAAGTTCCCAAGTCTGTTTCTGATCTACGCGGGTAAACTGATTGTC
TTACACTAGATTACTCTCACTTTTATTAGCCTATTAATGCAAATGTTGCC
GAACTTTTTTGATTCACAAGGTTGGTCTGTGAGGACATATCTTATGGCCA
GGAGAAGGTTCCTATCCCAGCTACCAACTTGGTTGATGATCCACCTGTTG
CACCTACAGGCAAGTTGTCTACCTCTCAGCATAGGACTTTCAGCGATGGC
GTGTGCACCAACTTCGTTAAATTAATCATAATTTACAAACCAAATAAGCA
ATCACACTATAGGTGTTGTCTACGCCCCTCCCAGATGACAACTAAATGCC
AAGCAGATACCGTAGGTTGTTTTAGATATGTGTATTCTAATTCAGCAAAA
CATACTAATCTGTTCTTTATTTTGGTCTAAGTAAAGCAAACACAATTTGT
AGGTGGGTCCTAATTTCCAAATACCAGTAGTGTTTCTTGCAGACCATATA
TGATATATAGGTTACAAATTATGTCACTTAGATAGGTATAGCTTATTTCT
TTAATGAAGAACTGCTACTGTCGTTAAGGCTCTATATATTATCAATGCCA
TAGATCTGAGGCTCAGTGTGAGGCTTCCACTTCATCCAGTCGTCAACTAG
TTGTTAATCCTGGCACCTTAAGCTGTTGGTATAAGTTCTGACATTGCCTC
GTGGTATAGTATTCTACAACTCTGTGCTTGCCGATTCAATTCACGTAATG
CCCTGCTTCCATGATTAGCAGATCTTTTATGGTTTGACTTGTATAACTTT
TTGATGTGTTTGGATATATATGTGAACATCATTTCCTACTTGTACATATC
ATCTTAACCTTCTGGACATTAATTCAGGTTTTACATACTGCAACTCTATT
CAAGTATCAGAACATGTTGAGCTCCCTCTGAAAGCCCTTGGATGCAACTG
CAGTGGAAATTGTGCATATTCTAAGACATGTTCTTGTGCTAAGCTTAATG
GTTCTAACTTGCCGTATGTCCTTCGTGATGGAGGAAGGTGAGATGAAGCA
AATCACAGGGTATTGGTTTTTTATTTTTAAAATTACATTTAATTTGTCAG
CTGTGATTAGTCATTTTCTATCTACAAGTTACGTATGCAAGAACAGAGTC
GCATGCTTTTATTTCTCATTACTCTTGCCACAAGCCTCTGTGTAATGTAT
GTATGACTGTGATATTTTATGGTCTTAAATCTTCGTCGGCAATAAACATT
AATAAAGTCTTTTCGAGATGGTGAGATATTTTTCACGTGAATTATATATA
GTTCATATGTGCCATTATAAACAGACAATAATCTGAGTAATGATTATTTG
GAGGCTAGCAACTATCTTTCTGTTTTAATCATCTCAAAAAACTGCAACTA
AATCAACAAGTCGGTCATGTCCTTGCCCTCAAATTTGTCTACCGCTAGAA
AGAGTGTGTTCATATGCTACATGTGTAAGATGATACATGCATAGTTGCTT
TGAAAGTCAAAACTAGTTGATATGTTGAATTGTTGAGTTCCTAATGGGAT
GAGGTATAGCTAAAAAATTTCAGCAGCCTTGTACTATAAAGACAGATAGA
GCACGAGTGGTCTTAGATCTGTATAAAATGTGGCTGTCTATTCTTTTGTT
AATTGAGTGCGTTTTAGGATGTGGGTCTGAGGATTCACAAATCATTGGCC
TACCTGGCGAAGTTTTTATTTTTTCGTGTTTGTTTGTTACGTAAAACCTT
GGCCTGAATGTCGATAACCTCAAAGCATGTGGGTCTGTCATAAATGACAT
TTATATATTAAGAAATATACACAATTTTCATTGCAAGTAGTAATCTGTAA
TAAAATTTCAAAATATGTAATTGAAAGAGGGAGTATGTACAATGATTAAC
ATGTTTTAAAATAATATTATATAATTTAAAGCTTCTTCCAAGCATATGGG
AAGAGAAAATATAGTACAATTGCTTTTGACACGCGTTTTGCTTTTTGACT
TAAAATTTATGCCTTGCAGACTTATTGAGCCTAAGGCCGTCGTATATGAG
TGTGGACCAAACTGTGGCTGTGGACCTGGATGTGTGAACCGAATATCTCA
GAGAGGATTGAAGTATCGACTTGAGGTATTGTATTGTGACTGTCTGCAGA
CAGTCCAGTTATCTGAGAAATATGGCGATTATACTTTTGTGAAACGTGTA
CTTCGTTTTGTGTGTGTACAAGTTATACTCCCTCTGTCCCAGTGGGTTGT
TTACAAATGGGACAGAGGGCTCGGCATGCATTTTAACTCTCTTATAAAGT
ATAGTTTAATAAATTATATTAACTTTTTTTCTCTTCCGAATATAAATTAA
TGTTTAAATTTTTATCTAAAAAAAGAAAATTCTAAAATAAGTTATGAAAC
TATACTTTATACACACCTTAAAAATTAAAATGCATGCCAAGCAGGGAAGA
AAAATTGTAAAGAATTAAGTGGGATGGATTGAGTATGAAATTATCGATTT
TTCTAAACCCATAAGGATTTTATGGATTCTATTCCATATAGACATGTATT
TAGCTTGCTTACTGGATGACTTGGGAAATTTTTTAAAATAATTAAAGTAC
CTGTTGTTAAATTATCAAGAGACTTGCGTCACGTGAATCAAGTTCGTAGA
GTATGCAAAGAAATGGTCATTGATGGTAGTGGAGCTAGGGCTGAAGTAAT
CTTATGTCTAGGCAGTTGACTCTTTCTATGATGTAGTCAAGCTCACCAGG
ACCATGATGACCTCCATTTTTGGTAGTTATTGCTTACTTTTTTCTTCTGA
TAGGTACTCATGGCATATTGGCTGTCTAATGTTTACTTGTAATATATTTT
CTTGTATCATTCTTCACAATTTATATAGCTTAGCAATATTTTGCAAGGAG
CCCTGATTCTAACCATGATTAAACTTTTCTTGATCTGTGCATATATATCA
TTTGTTTGTTTGTTTTATATTCTAGAATATAATTGCCATATTAACAGGTG
TACCGAACTCCAAAAAAAGGGTGGGCTGTTAGATCGTGGGATTACATACC
TTCAGGGGCACCAGTCTGCGAATATATTGGCAAACTTATGAAGACAGATG
ATGTGGATGCCATTCCCGAAAACAATTATATCTTTGATATAGACTGCTTG
CAAACAATGAAGGGGCTGGATGGAAGAGAGGTATGAGTTGAGGAGCATAT
CCTGATTAGTTTACTTTGGGGTTCCTTGGAAATTTATCAATTCCACTTGT
TCGACATTTAGCCAATATGTCAAGTATGTTGGTTCTTTCATTATTGCAAA
GCTACCATGAATTAAGAACATGTAGCTGAGTCAGAGAAGTTGGCTCCAAG
TCTTCTTGAGACAATTTTACTTGTAAGAACATCTTCTTATCCATTATAAA
CATCACGGGACCACACTTTAGATCTGTATTAGACAGCAGCTATCTTTTAC
AAAAACCATAAGTTCATAACTAGTAAAGTTAAGTCTGTCATTAGCTTAAA
CATTAGATCCCAAGCCCAAATCTGATTTTGCAAATACTATATAAGTATAT
ATAAGTTTGATGTTTGTATTAGATTTCAGATCAAGTGAAAGTTACAGATT
TATATAATATTATCTTAAAATTTCCATGTTAAAAGTGAAGTTGTTTCAAC
AGAAAGTATTTAACAATATACAACTATATTCACACTTGATATGGATAGGA
ATGAATAAACATGGAGCTAGATTTGACCGTGAAGTCGAGGAAAAGTTTTA
GAAGTCAAAGTTGGTTCCGGTCAGAGAACTGATAAAATTGACTCATTGGT
CGCCGTGACTCTAATACCAAACAGATTTTGGGACCAGCCAGCGTACTAGG
AGTGGAAAAGGGTTTGTATCTGGCCACAGAATGCTCCTGCAGGATTTTTA
ACTCTTGATTAGCACACTATTAATATCTAAACTTTATGTGGTTTTGTTGG
CACCATGTACACGGGTATAATCTGTAGTCATAACACTTTATGAATGTAAA
CCAAATAAATGATTGAGAGTGTTTGTTACTATGTTATTACTGACTTTTTT
TTGGGGTTAGATCTATCCTAATTATGCAACTTGATTGCGCTTAAGAGCTG
ATTTTTTCTTCCAACAGAGAAGATTAGGAGGTATGTCTATACCTTTCGTA
GAGAATGATGATGACAAGGACAGTGCTCCAGAGTTCTGCCTTGATGCAGG
CCCTACAGGGAATGTTGCGAGGTTTATTAATCACAGCTGCCAACCCAATC
TGTTCGTTCAGTGTGTTTTGAGCAACCACCATGATCTAAAACAAGCTCGA
GTTGTGCTCTTTGCTGCAGATAATATACCACCCATGAAAGTAAACCCTCT
GTCTCTATATATATATATATATATGATGTGTGTCCGTTTTGGTATAAGTA
TAATAAGGAAGGCATGTGTATGTAAATTATCTTTCGTAAGTTTGTCAAGT
TATTTTCATTAGATTATACTATTTAGACTGCTTGTAAATGTTTTGACTTT
TGGCTAATGCTTGAAAGTCTCTCTCTTTCTTTTAGTCAATGCGAGATTCA
AATTATCTGAACATTGGGAGATGATTGTGTTTCTTTAGTAGAATAATTGC
TGTACCATAGGAGTCTGAACAGTGAGTTTGTTTTCTCAAGGAAAAGGCAC
TGTTATGCACTTAATACCTGGTTATCTTTATTCTCTAATAATATTTTTTT
TGCCAAGTAGCTTCTTTAAGTTTCAACAAACTTGTGTCATAGTAAGACCC
ATTTACGTTTGCAACGGCATGGTAACCAACCTTTTTCTGTTGTTTACTTG
TAGGAGCTATCATATGACTATGCGTATGCTCTCGACAGTGTTGTGGATCC
TGATGGAAAAATAAAACAACTTTTGTGCTATTGTGGTGCTGCAGTTTGTC
GGAAGCGCTTGTTCTAG

Sequence Length:

9467

Sequence Checksum:

3722ca0d0525c3f0883c61931e04bcba

View location in JBrowse:

DCARv2_Chr1:34469627..34479093+

Cds:

>DCAR_002969cds ATGAGGGAGACAAATGCAATACTTTGCCCTAACAAAATAGGGTCTATTCC AGGGATTGAGGTCGGGAAACAATTTTTTTCAAGGGCTGAGATGGTTGCTG TAGGTTTCAATAGCCACTGGTTAAATGGAATTGATTGTATTTCCCATGCT GGTAGTGAGTTGTCCCGTGCCTATAACTTACCAATTGCTGTAGTGATAGT TATGTCAGGGCAGTATGAAGATGATCTGGATAACTGCGATGACATTGTGT ATACAGGCCAAGGTGGTAATAAATTATGTGGTAACAGGCGTCAATTCCGG GATCAAGTATTGGAAAAGGGTAATTTGGGACTAAAGAACAGTATGGATCA ATGTGTCCCAGTTAGAGTTGTACGTGGGCATGAGTGTAAAAGTAGTTACG TAGGCAAGGTTTACACTTACGATGGCTTATACAAGGTGGTTAGTTACTGG TCTGAGAAAGGTGTATCTGGTTTTAATGTTTTTAAGTTTCGTCTGAAACG GCTTGAAGGACAACCCCTTTTAACAACGGATCAGGTTCAGTTTGCTGGTG GACAAGTTCCCAAGTCTGTTTCTGATCTACGCGGGTTGGTCTGTGAGGAC ATATCTTATGGCCAGGAGAAGGTTCCTATCCCAGCTACCAACTTGGTTGA TGATCCACCTGTTGCACCTACAGGCAAGTTGTCTACCTCTCAGCATAGGA CTTTCAGCGATGGCGTGTGCACCAACTTCGTTAAATTAATCATAATTTAC AAACCAAATAAGCAATCACACTATAGGTGTTGTCTACGCCCCTCCCAGAT GACAACTAAATGCCAAGCAGATACCGTAGGTTTTACATACTGCAACTCTA TTCAAGTATCAGAACATGTTGAGCTCCCTCTGAAAGCCCTTGGATGCAAC TGCAGTGGAAATTGTGCATATTCTAAGACATGTTCTTGTGCTAAGCTTAA TGGTTCTAACTTGCCGTATGTCCTTCGTGATGGAGGAAGACTTATTGAGC CTAAGGCCGTCGTATATGAGTGTGGACCAAACTGTGGCTGTGGACCTGGA TGTGTGAACCGAATATCTCAGAGAGGATTGAAGTATCGACTTGAGGTGTA CCGAACTCCAAAAAAAGGGTGGGCTGTTAGATCGTGGGATTACATACCTT CAGGGGCACCAGTCTGCGAATATATTGGCAAACTTATGAAGACAGATGAT GTGGATGCCATTCCCGAAAACAATTATATCTTTGATATAGACTGCTTGCA AACAATGAAGGGGCTGGATGGAAGAGAGAGAAGATTAGGAGGTATGTCTA TACCTTTCGTAGAGAATGATGATGACAAGGACAGTGCTCCAGAGTTCTGC CTTGATGCAGGCCCTACAGGGAATGTTGCGAGGTTTATTAATCACAGCTG CCAACCCAATCTGTTCGTTCAGTGTGTTTTGAGCAACCACCATGATCTAA AACAAGCTCGAGTTGTGCTCTTTGCTGCAGATAATATACCACCCATGAAA GAGCTATCATATGACTATGCGTATGCTCTCGACAGTGTTGTGGATCCTGA TGGAAAAATAAAACAACTTTTGTGCTATTGTGGTGCTGCAGTTTGTCGGA AGCGCTTGTTCTAG

Pep:

>DCAR_002969pep MRETNAILCPNKIGSIPGIEVGKQFFSRAEMVAVGFNSHWLNGIDCISHA GSELSRAYNLPIAVVIVMSGQYEDDLDNCDDIVYTGQGGNKLCGNRRQFR DQVLEKGNLGLKNSMDQCVPVRVVRGHECKSSYVGKVYTYDGLYKVVSYW SEKGVSGFNVFKFRLKRLEGQPLLTTDQVQFAGGQVPKSVSDLRGLVCED ISYGQEKVPIPATNLVDDPPVAPTGKLSTSQHRTFSDGVCTNFVKLIIIY KPNKQSHYRCCLRPSQMTTKCQADTVGFTYCNSIQVSEHVELPLKALGCN CSGNCAYSKTCSCAKLNGSNLPYVLRDGGRLIEPKAVVYECGPNCGCGPG CVNRISQRGLKYRLEVYRTPKKGWAVRSWDYIPSGAPVCEYIGKLMKTDD VDAIPENNYIFDIDCLQTMKGLDGRERRLGGMSIPFVENDDDKDSAPEFC LDAGPTGNVARFINHSCQPNLFVQCVLSNHHDLKQARVVLFAADNIPPMK ELSYDYAYALDSVVDPDGKIKQLLCYCGAAVCRKRLF*