DCAR_025903 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_025903

Identifier:

DCAR_025903.gene

Locus Tag:

DCAR_025903

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_025903, is a part of gene, DCAR_025903.
The genetic_marker, MK006569 K4013, is located in gene, DCAR_025903.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_025903	DCAR_025903.mRNA	mRNA	DCARv2_Chr7:31580573..31589909

Sequence:

ATGGACGTGGAGAAGGCGTCGCTGTGTAATTGCGTAGTGAATTTCCTGTT
GGAGGAGAATTACTTGTTATCGGCTTTCGAGCTTCTTCACGAGCTTCTCG
ATGACGGTCGCGATGCTCACGCCATTCGCCTCAAAGAGTTCTTCGAGAAT
CCGTCTCAGTTTCCTCCCGATCAGATCTCTCGCTTCAATTCTCTCCGAGG
TCTCTCTCTCCCTCTCTCCCTCCCTCCCTCGCTCTCTCTCTCTCCCTCTC
CCTCCCTCCCTCCCTCCCTCTCTCTCTCGCTCACTCTCCCGCTCTCTCCC
CCTCTCTCTCCCCCCCCTCTCTCTCATCTCAGCATTATGAAGTTATATAC
ATCTGTATTTAATTTCAACGTTGTTATGAGTATTATTCTTGCTATCAACT
GTTTGTTGCACGTATAGACGAAATGAAATAGTCGTTGCTTTGATTTTGGT
ATGAATTTGTTCAACTTTGATTTTGGTATATTTGCTCAACTTATCAAAGA
ATGATCGTTAAACTTGTTTGTACGACACTTGATAGAACTAGACTTGGAAG
TCGAAACACTGGATCACAATCTTTCGAGAGTGTTTGCTTCATTATGCTTC
AGAAGTAGATTAAGTTTTACGAATGACTTCAGATTTATGATGTGCTGATG
ATGTGTGATTCTCTAGTGATATTTCTACTACTTTTTTTTAGCGGATAAAT
GCAATGTAAAATTGTAGTGTCTGCAATATTTGTATTTGGTTTGGACTGTA
TACAATAGCATATATAACATGCTCTAGGATTGATCTTCACTTAGAGGTTG
TTGATCTTATGATTCAGTTTACTTTAGCCTCTATTTGTCTGTAAGTTCTA
AAGTATTCGCTTATTTTCCTAATTAACATCCTGCAATTTATGATTGAAGC
ATGGGACTTGGTCAATCTTTCTTGCCACTGCATACTAAAAGCCCTATGTT
GAATCTTTTTGATTTTTGATATGCTCAATTCTTATGTAATTTCTTTTTAA
TTCGTCGCACCAGTTGCAGACCCCCAAACTTTGCTAGAGGAAAAAGAAAC
ACTGGTAGAGAAGCTAGCGATCGCGGAGTATGAACTTCGTTTAGCCCAAG
AAGATGCTACAAAATTAAAGGGTGAACTGCAAAAGAAAACCGACATCACA
CCAAGTGAACTAAGCGGTACATCTCAACTCTGCTTCACATGCTTTTCTTA
TTTTCTTTGAAGATGTGACACCTAGTCGATAGAGAATTTTCTTAGGCATA
AGGTGCATTTAAGAGAATAGCACACCTTAACCAAGATAAAAATCTTTGAA
TTCCCCCGATTGGACTTGATATGAAGTTGCAATGAAGAATTGTTATGCAC
AAGCTCTTATAAAAATTTTATTGTGCTATGAAACTGGTAATTTCTTAGCA
TATTTTATGTCAGAAACTACCTTACTCTTGGTCAAAATCCGTGTTTGCCA
CTGGCAGTCTGGTGCCAGACCATTTATGTAGCTTTAAACTCATTTTTTGC
TGCTTTATGTTGTCCGTTTCACTCCCAATGTGATATGTTTCCTTGATAGT
AGAGGCTACATTGGCAAATAAGGTGTCAGAAGAGTCTGTCTTTCGGACCC
TATCATCGTTTTCTACTCGTTTTCATATGTGATGTTGGTACTTTCTTATT
TAAAGCTTTGTAGATATATCACAAAAATGTCATACGGATCATAAGATGTT
TACTGTAATGCCAATTTAGTATTACGTGTTCTACATAGGAAGAAACAACA
CACCTGTTCCAATTTGAGTTTCCATCCATGTCTTATGCAGGGTCGCCTTC
AGAGGCTTCTGCTAATTATGAGCCAAATCCTGAACTACGGAAGAGTGACT
CTTCCTTTTCTGAGTTGGGTCCTCTAAAGGAGCATGAACGCAGAGATCTT
AATTGTGCTGTTAAGGAGTATTTGTTGTTAGCAGGATATCGACTCACTGC
AATGACATTTTACGAAGAGGTAATTTTTAAAATGTTAAACATTTGACTTA
TATCGTCTGTGTACACGAATAGGGCAACGGAACCACTACCATCATCTGTG
GTTCCGTGTCTTGTCTGTGGTTCCGTGTCTAAATGCACTAAATGCAAAAA
ACACAACACTAAATGCATATCTGTGGTTCCGTGTCTTGTCTCATGTTATG
TATATAATATATAAACAAATATTGTTAATGTAACATATACAAAATCATTT
TTTTATTATAATTTCTGACGATATAATGTTAGTTTTACAATTTTCAAACA
CTGAAATATTATAATTTCAGTCTTAGAGTTTTAATATCTACTATTTCAAT
TATTATGAGGTTGTAATTTGTATAAATTAGACAATCTTCTATATATATAC
TTCTATACTATACTATCATAATGGAACATATGTATAATTGGTTGGTTATT
GGTTTGGTTTGGTGGGTTCGTTAACCAGAGTAATGACCCTGGGACCATTA
AGTATAGAAGAGAACTGTTATATCTTATCCTAAACTTAAAGAAAATTCTA
TATTTAAAAAATAAAACAATTACATAAAGGTCTCAGGCTCTTCTGTTAAC
AACCTATTACAATTAAATATTTTTATTATTTGTTCTGAAGATGCAATGAG
TGGGTTTGAATCCCATCAACTACATACTATTAGTTACAAATTTATTCGTT
GAAAATTAATTTATAACTATATAATAACTAATTTTTAATGTTTCATCACT
ATTGAAATTATAATCTATTATTTACACTAAAATATAACTTAAACTTCATT
TATTATAAGTATTATTATTTCAAATAAATCATGTATAATAATTTAAGCAT
AAATAAGAAAGTTATAAAAAACTAAAGGAAACCAGTGCATCGCACGGGGT
AATAACTAGCAACTAGTATATGTATTTGTTTTGTGTACTTTTGTGAGCCA
AACACGACAGTGAATCATTCATGTGCACTGTCGTATTAGTTTACTTTAAA
ATTTCGTGAACCAAAAGTAACCCAAACACTTAAATTTCGTGCCTGTGCTG
TCGCTGTGATGTCACGTCATTTACAAAATTGCCGGTCTAGTTATAAGAAA
TTGTATTAAGTTTGAATAGAGAAGCCTTCCTACTTTTTTGACCAAGTACA
CATGGATAGATAAGACTTTTAACTGGTAAGTAAACCTGGTCTGTATATAC
TTTAACTGGAAGTCAGTGCATGTTATATATGTATCTCACATGATACTAGT
TGCTGCAACTATCTGGTGTTTAATTCTTTCGCAAACATAAATATATTTGG
TTTGTCTTCCTGATTTTATGTATCTTTTTATAATAGCTTTTAGTGGGGGT
TAATTAGTTTATTAAAATGCATGTACATGTTTGATGTAAAATTGCTAGCA
TTGTTGTACTCTTATATGTTTACTTCAGGTTACAGACCAGAACCTAGATG
TATGGTCGAAGTCATCTGCATGCGTTCCAGATGCTTTGCGCCATTACTAT
TACCAGTACCTTTCGTCGACTGCAGAGGCTGCAGAGGTACTTCTTCAGAC
ACTCATGGGGTAGGCTAGTTCTTGTTCTTTATGTGCTCTGAAGGAAATTT
TTGCATGTTGTTTGTTAATAATAATCAAGCTATATAGAAAACAATTTTTA
AACTACTACTAGTAACTGTTTATCTCTAGATTTCAGTCAGTTCTTCAGAT
GAAGTAATCATGGGGTCTATCACTCTTAAATTTACTTATTAATACAATTA
TTTATCTCCTATTTTACGTTACTTACAAGGTTGGCTTGGTGCTACAAACT
CCTGGTAGAGTAGTCCATGACACCATTTCCTTATTAAGGTATCTGTCTAA
AGAAAGTGGCAGGAGACAATCTTCAATGTTCTACTTTGCGTAATCCAGTA
GAAAACGACATTTAGTGTGTAGAGACAAATTGATGTATTAAAATTCTAAT
TTCTTCCTCTATATTTTGTATACATGTTTATTTGTTTATTCTTTGGCATC
AACCTTATCTTCTTATCAAGACAATTACGGTATGCCACAAGCAAGGACTC
TAAGCATTGGTCTAGCTTAAGTTTACATTCGTGTCATTCTTTAACTTTTA
AAATAAGTTTTGGGTTACTTTTTATCACTTTCGAGTACACATTGAGAGAC
CATTAATCGTACCCGCTTCCTAGGTGTTACTAATCCCATGGAAATGAACT
AAAAAGTGCCTATAAATTTTGAGTGAATAACCTCGTAGTCCAGTGATTAT
TAATCACGTAGATGCACATTATGTATACTTTTATAAAAGGATGCATGTAA
TTATAATGTATTGGTTAGCGGTTGCTTGTCCTGAATTGCACATAAATGAG
AAGCATTCCTACTGGTGCAGGAGAAAATTGCCATACTTAGAGAGCACGAA
TCCTTGCAGAAAGAAATTGATAGACTGAAATCTGAAAAGCAGGCTTCAAT
AAAATACAAAGATTTGGCCGATGGGCAAGTTATGGCATTAACCAAGTCAC
TGGAAACTCTGCAAAATAGTATTAAGGAAAAGGAAATTCTGGTAATACTC
AATCACTTTATATCTATGAGCAAGCATTGTACTATGAATTCAGGCATGAA
ACTGTAGATTTGTTCATGTTTCAGGTGAAAGATTTAAAGCAGTCCTTAGA
TCACCAAAGAAAAGAGCTTAACGACTACAGAGCTGAAACTACTTCACTCA
AAATGCACATTGAAAGAACTCAATCTGGACAGTTTTTGGTCCAAAGTAAT
GTGGAGCAAGTTGAATCACTGTCGTTAGAGAGCTACAAGGAACAGTTAGA
AGCATTGCAAAAGGAAATAGAACAGCTAAAAGCTGCAACATCCGTTCCTA
ATTTTGTAATACCTGTTAGTCATAAAGATGAGAGGACGGAGGCCAATGAC
GATGTTGTCAAATTGCCTGAAAGAGATGCCACAAAATCTTCAGATCAGGT
TCTAGGCGGATCCTTAGAACGTGAAGATAATCAATCTGTTTCACTTGATA
TGAGTCCTGGAATCTCTATTGCGCCTAAAAAGGTTTCGGAAGAGCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTTAAAATTTTTTTTGGGAAGAGCCGGCAA
TCAGTTCTTTATATGAAAGTTCGCTCACTAAAGAAGTTAAAAATACCCCC
AAATACAATGCTGGATCACCTCGTGATGAAAATGGGTTGCTCTTAAAAAC
AGATAGTCTGGGTGAAGCTAATATTGAGAAGATGGTTTGTCTCTTCCACT
CACTCCAAAACTGTTCCCCTTCCCATGTGTGAATATTTATGTATTTAATG
ACAACACTATTTTCTTTGAAACCAGGGTCTTCTAACCATTCAAATATTGT
CTGATGCATTACCTAAGATAGTTCCTTATGTTCTCATCAACCATCGTGAG
GTGTGTTTACTGAGTTATCTTGATTTTTGCTCCATGTCATTTTTGATGAT
ATAATTACTTATTCAAAAGTCTGTTTTCTTTTACCTGTAGGAGCTTCTTC
CCCTTATAATGTGTGCAATTGAGCGCCATCCAGATAGCAGTACACGGGAT
TCCTTGACACATACACTGTTTAACTTAATTAAACGTCCTGATGAGAAACA
GAGACGAATCATTATGGATGTTAAGTTTCTGATCATTACCTAGAATACAT
GGTTTTATTTTAATCTGTTAGTATATCATTATAAAATACTAGAGTTTTAT
GCTGTGTCCAGGGCTGTGTTACTCTTGCTAAGGACGTGGGAGAGATGAGA
ACAGAAACAGAATTGCTTCCCCAGTGTTGGGAACAAGTGAGATCATGTTG
ATTAATTATGACACTCTTTTATATGACCAAAGATTGTATGCAATATTGGT
TGATTCCTGTTATGCAGATTAATCATAAGTACGAGGAACGCAGGCTGCTT
GTTGCTCAATCATGCGGAGAGCTTGCAAGATTTGTGCGGCCAGAGATTCG
TGATTCACTCATCTTGTCTATTGTGCAGCAGCTGATAGAGGATTCTGCTA
CTGTTGTACGTGAAGCTGCTGCTCGCAATCTCACCTTGTTGCTTCCACTC
TTTCAAAACATGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTCTGCTACTGTTGTACG
TGTAGCTGCTGCTCGCAATCTCACATTGTTGCTTCCACTCTTTCCAACCA
TGGATAAATATTACAAGGTCAGCTTCACTAATTATGCTTCGAGGCAATCA
TGGAGAAGATTATCTGACTAGACAGGATTGCCTACAAATGTAAGCTACAT
GGTCTAGGAAATGGATCATATTCCATGATCATAATATGTTTGCTGAAAGG
AAGAAAAAGATGAAACTAGTATTTTAGAGATTTCTCCAGTTTTTCTTCTT
TTGCTTGTCATAGGTGGAGGAGTTGATGTTTCAGTTAGTTTGTGATCCAT
CTGGAGTGGTTGTAGAAACAACGATCAGAGAATTAGTGCCTGCTCTATTG
AGCTGGGCTAACAGATTGGATAACATGTTACGAGTATTAATGTCTAACAT
CTTGAGCTCCGCTCAGGTAAACATATATCTGAAAACACTTCATTTTTCAT
ACCAAATCTTGCCCCAGTACAATGTCAATGATGCAATTTATTTTCAGCGG
TGTCCACCTGTATCAGGGGTTGAAGGTTCTCTTGAATCATATCTCCGTGT
TTTGGGTGAACGGGAGCGTTGGACTGTTGATGTTTTATTGCGATTGCTGG
CAGAATTGCTTCCAAATTTGCACCAAAAATCAATTGAAACTTGCCCATTT
CCTTCTGCTTCAGATGTTGCAGGAACACTGTTCTCTACTTCCTTGTTAGA
ATTGTATGCAGGGTAAGTCCCGTTGAGTCTTCCCAAGTGGATGCTAGCTT
TCTTGTTTAAAATGTGCAATTGTGTCTCAGTTTCTTTTGAATTATGTGAT
GAGTAGGGGACACGTGGAATGGCCTACTTTTGAGTTGCTACATTGTGATT
GCTTTCCGACTTTGATACAATTAGCCTCATTATTACCTCAGAAAGAGGAT
AAGTTACGAAGTCGAATTACAAAGGTACACTCCCTTGTGTAATGGTTGAT
GTTTCTTAACATTTATTCTTGTATAGTGACGCTCTTGGTTGATGCAGTTA
TTGCTGACCGTGTCTAAGCTCTTTGGGGATGATTATGTAACAAATATTAT
GCTACCAGTATTCCTGATAGCAGTTGGTGATAAAGCTGATTTGACGTTCA
TACCTAACAGAATTCAAACAAGAATCAAAGGTTTTGAGTGCTCAGATTTC
TGAATTGGTAATATTCTTGTCATGCATGTCATGTTACTAAATATCTCAAT
TCTTGTGAACTGCAGGTTTAAGACCTAAAAGTTCGGTAGCTGAGAGACTG
GCTACCATGTGTGTCCTACCTATACTTCTGGCTGGTGTATTAGGAAGTCC
AAGTAAGCATGAAAATTTAACAGAGTATTTGAGGAATTTGTTAGTCCAAA
ATGCCGTTCAGGAAAACCAGTCGGTGAGGAGGAATGCAGAGATTGTTAAT
TCTGTCCGCTTCCTTTGGTGCGTACCCTATTGCCGAGATGAATATATGTA
TAGAGTTTGCACTTTGGTATTGAAACATATACATTCTAACTTTCCACTTT
GATATACAGCTCTTTTGAAGAACATCATAACATGGTTTTTAATATCTTAT
GGGAAATGGTTGTAAGCTCCAACATATATATGAAAATTAGTGCTGCTAAT
CTTTGGAAAGCCATAGTAAGACTATCACTGAATCACAGTATTTATTTATC
GTTTCATATACCTGGATACCTCTTTACTCATGTTTGTTTTGTGTCGGCAG
GTTCCATATATTGATGTAAAGGTTGCATCAACTCATGTTTTGCCTGCTCT
TGTAACTCTTGGTTCTGACCAAAACTTAAATGTCAAATATGCAAGCATTG
AAGCATTTGGGGCTGTAGCACAGCATTTCAAAAATGACACGGTACTCCCT
GCTCATGACAACTTTAAATTAATTTTATTTCGGTTATAGAAGCTTCTTTA
CAATGGTCATGGCTTTCTTTTCTTTGTAGATAATTGAAAAAATACGTGTT
CAAATGGATGCTTTCCTTGAAGATGGATCACATGAAACTGCAATCGCCGT
TGTGCGTGCATTGGTGGTTGCTGTCCCGAATTCAACAGACAGATTTAGAG
ATTATATCCTTAAAATATCTCGTGTACATTATCAGTGCTTGACGTAGCTC
TGCTAACTCTTATTATTGGTGCCAAACAATTTTTTACCCCAATTATGTTA
ACTGTTTCTTAACTAAATATACATCTGTTGTCCAAGATTTGCGTACTTTC
AGCTGCACCAATTCCTTCAAGTGATGTGGTACGTCGGCGTGACAGAGCCA
ATGCATTTTGTGAATGTATTCGTGCTGTAGATGCTACAGGTATGTTTATC
AAGCCTGGACATGTGTTTTAAGTTATAATTGTTTAGTATTCCGAATGAGA
ATACAGCACCTCTGTATAAATTCCATTCTTCGAAAAGCCAAAACAGATGA
ATAAAGCTACCTTTCTGAATTCTGATAATACAATAGTACTGTATCAAGGC
ACACATGAAAAAAATGCAGACTCCATGGCCCTTTGCGTGTTACCATCGTA
TAAACTTATTGTGCTAGAAAAAGATGATTAATTTTTGAAGTCATCCTCAA
ACAATCTGATACATGTTTCTCATCTGCTGATATTTCATATGGTGTTTGTG
TCATCTCTGGTGCAGAGCTTCCTGCCACAAGTGTTAGGGATTATTTGCTA
CCAACCATACAAAATCTGTTAAAGGACTCGGATGCTCTTGATCCAGCACA
CAAAGAGGCGCTTGAAATTATTGTAAGGGAAAGATCTGGGGGATCATTAG
ACACATTTAGCAAGGTGATGGGTGCACATCTTGGGATCACCAGCTTATTC
GGTGAAGGGGGCTTATTGGGGAAAAAGGAAAGTGGGGATTTATCGGCAAT
GGCAGACCAGCTAACTGAGGCTTCAAAGCCAATTCCAGCAGCTCCAGATC
CAGCACAAACAGCGGACGACACAAGATTTAGAAGAATAATGAGGGGTGGT
TTTACAGACATTTTAAGGGGGAAAACAGAGCAATAA

Sequence Length:

9336

Sequence Checksum:

7f73236ccf02bb8a931557db10307d6b

View location in JBrowse:

DCARv2_Chr7:31580574..31589909+

Cds:

>DCAR_025903cds ATGGACGTGGAGAAGGCGTCGCTGTGTAATTGCGTAGTGAATTTCCTGTT GGAGGAGAATTACTTGTTATCGGCTTTCGAGCTTCTTCACGAGCTTCTCG ATGACGGTCGCGATGCTCACGCCATTCGCCTCAAAGAGTTCTTCGAGAAT CCGTCTCAGTTTCCTCCCGATCAGATCTCTCGCTTCAATTCTCTCCGAGT TGCAGACCCCCAAACTTTGCTAGAGGAAAAAGAAACACTGGTAGAGAAGC TAGCGATCGCGGAGTATGAACTTCGTTTAGCCCAAGAAGATGCTACAAAA TTAAAGGGTGAACTGCAAAAGAAAACCGACATCACACCAAGTGAACTAAG CGGGTCGCCTTCAGAGGCTTCTGCTAATTATGAGCCAAATCCTGAACTAC GGAAGAGTGACTCTTCCTTTTCTGAGTTGGGTCCTCTAAAGGAGCATGAA CGCAGAGATCTTAATTGTGCTGTTAAGGAGTATTTGTTGTTAGCAGGATA TCGACTCACTGCAATGACATTTTACGAAGAGGTTACAGACCAGAACCTAG ATGTATGGTCGAAGTCATCTGCATGCGTTCCAGATGCTTTGCGCCATTAC TATTACCAGTACCTTTCGTCGACTGCAGAGGCTGCAGAGGAGAAAATTGC CATACTTAGAGAGCACGAATCCTTGCAGAAAGAAATTGATAGACTGAAAT CTGAAAAGCAGGCTTCAATAAAATACAAAGATTTGGCCGATGGGCAAGTT ATGGCATTAACCAAGTCACTGGAAACTCTGCAAAATAGTATTAAGGAAAA GGAAATTCTGGTGAAAGATTTAAAGCAGTCCTTAGATCACCAAAGAAAAG AGCTTAACGACTACAGAGCTGAAACTACTTCACTCAAAATGCACATTGAA AGAACTCAATCTGGACAGTTTTTGGTCCAAAGTAATGTGGAGCAAGTTGA ATCACTGTCGTTAGAGAGCTACAAGGAACAGTTAGAAGCATTGCAAAAGG AAATAGAACAGCTAAAAGCTGCAACATCCGTTCCTAATTTTGTAATACCT GTTAGTCATAAAGATGAGAGGACGGAGGCCAATGACGATGTTGTCAAATT GCCTGAAAGAGATGCCACAAAATCTTCAGATCAGGTTCTAGGCGGATCCT TAGAACGTGAAGATAATCAATCTGTTTCACTTGATATGAGTCCTGGAATC TCTATTGCGCCTAAAAAGCCGGCAATCAGTTCTTTATATGAAAGTTCGCT CACTAAAGAAGTTAAAAATACCCCCAAATACAATGCTGGATCACCTCGTG ATGAAAATGGGTTGCTCTTAAAAACAGATAGTCTGGGTGAAGCTAATATT GAGAAGATGGGTCTTCTAACCATTCAAATATTGTCTGATGCATTACCTAA GATAGTTCCTTATGTTCTCATCAACCATCGTGAGGAGCTTCTTCCCCTTA TAATGTGTGCAATTGAGCGCCATCCAGATAGCAGTACACGGGATTCCTTG ACACATACACTGTTTAACTTAATTAAACGTCCTGATGAGAAACAGAGACG AATCATTATGGATGGCTGTGTTACTCTTGCTAAGGACGTGGGAGAGATGA GAACAGAAACAGAATTGCTTCCCCAGTGTTGGGAACAAATTAATCATAAG TACGAGGAACGCAGGCTGCTTGTTGCTCAATCATGCGGAGAGCTTGCAAG ATTTGTGCGGCCAGAGATTCGTGATTCACTCATCTTGTCTATTGTGCAGC AGCTGATAGAGGATTCTGCTACTGTTGTACGTGAAGCTGCTGCTCGCAAT CTCACCTTGTTGCTTCCACTCTTTCAAAACATGGTGGAGGAGTTGATGTT TCAGTTAGTTTGTGATCCATCTGGAGTGGTTGTAGAAACAACGATCAGAG AATTAGTGCCTGCTCTATTGAGCTGGGCTAACAGATTGGATAACATGTTA CGAGTATTAATGTCTAACATCTTGAGCTCCGCTCAGCGGTGTCCACCTGT ATCAGGGGTTGAAGGTTCTCTTGAATCATATCTCCGTGTTTTGGGTGAAC GGGAGCGTTGGACTGTTGATGTTTTATTGCGATTGCTGGCAGAATTGCTT CCAAATTTGCACCAAAAATCAATTGAAACTTGCCCATTTCCTTCTGCTTC AGATGTTGCAGGAACACTGTTCTCTACTTCCTTGTTAGAATTGTATGCAG GGGGACACGTGGAATGGCCTACTTTTGAGTTGCTACATTGTGATTGCTTT CCGACTTTGATACAATTAGCCTCATTATTACCTCAGAAAGAGGATAAGTT ACGAAGTCGAATTACAAAGTTATTGCTGACCGTGTCTAAGCTCTTTGGGG ATGATTATGTAACAAATATTATGCTACCAGTATTCCTGATAGCAGTTGGT GATAAAGCTGATTTGACGTTCATACCTAACAGAATTCAAACAAGAATCAA AGGTTTAAGACCTAAAAGTTCGGTAGCTGAGAGACTGGCTACCATGTGTG TCCTACCTATACTTCTGGCTGGTGTATTAGGAAGTCCAAGTAAGCATGAA AATTTAACAGAGTATTTGAGGAATTTGTTAGTCCAAAATGCCGTTCAGGA AAACCAGTCGGTGAGGAGGAATGCAGAGATTGTTAATTCTGTCCGCTTCC TTTGCTCTTTTGAAGAACATCATAACATGGTTTTTAATATCTTATGGGAA ATGGTTGTAAGCTCCAACATATATATGAAAATTAGTGCTGCTAATCTTTG GAAAGCCATAGTTCCATATATTGATGTAAAGGTTGCATCAACTCATGTTT TGCCTGCTCTTGTAACTCTTGGTTCTGACCAAAACTTAAATGTCAAATAT GCAAGCATTGAAGCATTTGGGGCTGTAGCACAGCATTTCAAAAATGACAC GATAATTGAAAAAATACGTGTTCAAATGGATGCTTTCCTTGAAGATGGAT CACATGAAACTGCAATCGCCGTTGTGCGTGCATTGGTGGTTGCTGTCCCG AATTCAACAGACAGATTTAGAGATTATATCCTTAAAATATCTCGTATTTG CGTACTTTCAGCTGCACCAATTCCTTCAAGTGATGTGGTACGTCGGCGTG ACAGAGCCAATGCATTTTGTGAATGTATTCGTGCTGTAGATGCTACAGAG CTTCCTGCCACAAGTGTTAGGGATTATTTGCTACCAACCATACAAAATCT GTTAAAGGACTCGGATGCTCTTGATCCAGCACACAAAGAGGCGCTTGAAA TTATTGTAAGGGAAAGATCTGGGGGATCATTAGACACATTTAGCAAGGTG ATGGGTGCACATCTTGGGATCACCAGCTTATTCGGTGAAGGGGGCTTATT GGGGAAAAAGGAAAGTGGGGATTTATCGGCAATGGCAGACCAGCTAACTG AGGCTTCAAAGCCAATTCCAGCAGCTCCAGATCCAGCACAAACAGCGGAC GACACAAGATTTAGAAGAATAATGAGGGGTGGTTTTACAGACATTTTAAG GGGGAAAACAGAGCAATAA

Pep:

>DCAR_025903pep MDVEKASLCNCVVNFLLEENYLLSAFELLHELLDDGRDAHAIRLKEFFEN PSQFPPDQISRFNSLRVADPQTLLEEKETLVEKLAIAEYELRLAQEDATK LKGELQKKTDITPSELSGSPSEASANYEPNPELRKSDSSFSELGPLKEHE RRDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDVWSKSSACVPDALRHY YYQYLSSTAEAAEEKIAILREHESLQKEIDRLKSEKQASIKYKDLADGQV MALTKSLETLQNSIKEKEILVKDLKQSLDHQRKELNDYRAETTSLKMHIE RTQSGQFLVQSNVEQVESLSLESYKEQLEALQKEIEQLKAATSVPNFVIP VSHKDERTEANDDVVKLPERDATKSSDQVLGGSLEREDNQSVSLDMSPGI SIAPKKPAISSLYESSLTKEVKNTPKYNAGSPRDENGLLLKTDSLGEANI EKMGLLTIQILSDALPKIVPYVLINHREELLPLIMCAIERHPDSSTRDSL THTLFNLIKRPDEKQRRIIMDGCVTLAKDVGEMRTETELLPQCWEQINHK YEERRLLVAQSCGELARFVRPEIRDSLILSIVQQLIEDSATVVREAAARN LTLLLPLFQNMVEELMFQLVCDPSGVVVETTIRELVPALLSWANRLDNML RVLMSNILSSAQRCPPVSGVEGSLESYLRVLGERERWTVDVLLRLLAELL PNLHQKSIETCPFPSASDVAGTLFSTSLLELYAGGHVEWPTFELLHCDCF PTLIQLASLLPQKEDKLRSRITKLLLTVSKLFGDDYVTNIMLPVFLIAVG DKADLTFIPNRIQTRIKGLRPKSSVAERLATMCVLPILLAGVLGSPSKHE NLTEYLRNLLVQNAVQENQSVRRNAEIVNSVRFLCSFEEHHNMVFNILWE MVVSSNIYMKISAANLWKAIVPYIDVKVASTHVLPALVTLGSDQNLNVKY ASIEAFGAVAQHFKNDTIIEKIRVQMDAFLEDGSHETAIAVVRALVVAVP NSTDRFRDYILKISRICVLSAAPIPSSDVVRRRDRANAFCECIRAVDATE LPATSVRDYLLPTIQNLLKDSDALDPAHKEALEIIVRERSGGSLDTFSKV MGAHLGITSLFGEGGLLGKKESGDLSAMADQLTEASKPIPAAPDPAQTAD DTRFRRIMRGGFTDILRGKTEQ*