DCAR_026010 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_026010

Identifier:

DCAR_026010.gene

Locus Tag:

DCAR_026010

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_026010, is a part of gene, DCAR_026010.
The genetic_marker, MK005214 K2658, is located in gene, DCAR_026010.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_026010	DCAR_026010.mRNA	mRNA	DCARv2_Chr7:32431882..32439390

Sequence:

TACTAAACGGACCTTGCTGTCTTCCCCTGAGATAAAACCTAAATGCCCAA
ATGACCGTCGGCAAATTCACGATCCCTCCCATCAAAAACTCACAAAACAC
AATTACTCTTTAACATATCGATTAGATTATATATACAAGTGATCATATAT
GCAAATATAGTTTCGTTTCCCCTTTGTCGCCTTTTGCTTTCGAGCTCTCT
CTCTTGTTTTCTCTTACCGATCCCTATTATCGTGTAAGCTCTCCCTCTCT
CTCTCGCGCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCC
CCCCCCCTCTCTCTCTCTCTCTCTCTGTTGATTATAAAATGTGGATCATA
AACAATAAAATTGAGTACGCAGGGTTGTCACTTGCTGTTACTTTGAAATT
TTTCAATACATAGTTCATCAATTATATAATATCGCTCCTTCTCAACAACT
TGTTATTGTACCTCAGTATGTATGTGTGTGTGATGATTACATAATTGATG
TTGAATCAACGGAGTTTAGTATTGTGTGTCTGTGTTTGTGTTTACTCCAC
TTACAAACCACCTAAGATCTCTTGTTCTGCTTTAATATTATCTCGTAGAT
ATAACGGTTTAGCTTTTAGAATTTTTATACTTTTCTGAAATGTCGTAATT
AACTGAAGCTTATGCTTATTTGATTCCAATATACATACAGCTAGCAACCT
AAGATTTGTGTGTGGATTATCACAATACATGTAAACATCTATTTCTTTAA
TGTGCCAACGGTTAAAAGGGTGCCACAAATATTGGACAACATGTTCTTTC
CTGTATTGGACGATACTTATTCCTTGATGCTATTAAATTATGTATTGAAT
CTTGACTTCTCGTTTTTAGTACTTGTGGTATGGCGAGAATAAATTATAGG
GAAATTCTCAATGGTACCCTTATGTTTCATGGCTTATATGTGATCATTGA
GTATGTTAGTGCTAGCTAAGAGGAGTCAAAAGTAGGGTCTGGTTTTCTTG
TTTGTTATTAGATGATATGCAAGTTAGAATACTATTTTTGATAATTAGAT
TAAATCTTAAATGTGAACAGCAGAACTGATGAAATGAATCTTTCGATATT
CAAACCAACCTTCTTAACTTTGCTTCGGGGGTGGGGGGATAAAATTGAAT
AATCACTAAATACAATTGTTCTAATCACTGGTTTCTGGAGGCTGGGGTGG
GTTGGGGGTTATAATTACGAAATATAACTGTTCTGATCACTGGTTTTTAG
TTTAAGTGAGTTTGTAGAATAGAAATAGAAACATTATTGATTAACATAGT
TATATTTAATGTTTATCTTCCCCAACCACCAGACTTAGCTGCCATTACCC
AAACGTTAAGGGAAGTTAGAAAAAAACGGCATTTGTTGGAGGCATTAATA
GGGCAAGGGTATTATGAAGGATATTCTTTCAAATAGTCTCTTAAATTTTA
AATAATATTCTGTTTAGATATTTTTAAATGTGATAGTTTGTTATGGATGT
TGAAAGTGGGAAAAGTTGAAGCGTAAATGGCTAATTAAGTCATTTACAAT
AATTTTAATGCTTATTTAACATTTAATTAAGTGAAGGGATATACGTGAAA
TGTAAAATACAAGGTTATTATTTGCAAGTCAGAAGTAAAAAAGACACTAT
TTGGAATAGTCAAAGTAGAAGGGTGTCATTGAGAATATACCTAAATTATA
TTCAATTAGAAGATAAAAGAACTTGTATTAGTGATCTTGAGCTTGTCAAT
TACATTTGCGGTCAGTTTTGTGCAACCCGATAATGCCTACTTTCTAATTT
GGTAAATGAGATTTGTGGTTTATTTAATTGTTTTTATCTTGAACATTGAA
TAGGGAGATATTGAGAAAGTTTTATGGATGATCCGCATAACAAGTCAGTA
ACATGATTTTGGTTTGGAAATCAGAATTTTGGCATCAATGACTATGATAT
GTTGCATAATAATGGCACTTGGTTCGTACTTCTGTGCATATAAAGCTTTG
AACATATAGGTTGGTTTTGTATCAAGTACATCCTATTGTGTTAGAGGTGG
GTGATATTTTCGAAAAATGGATGATGATCGAGAACCTGGGTTTCCGTCTC
ACATGGTTGAATCACGTCTTTTTACTGTCTCTTGCTTTATTGCTGGACTT
ATAGGAGTCCTCACTATAGCCTACACTGCCTTCCAATGGAGGAGAAATAT
CAATCTAGGTTGGATGAAAGCTATAGCCAGGTCAAAGAAGAACCCGAAGA
CCAGGAGCAAAGCTCCTGTAGCTCCTCATACTTGGGTTTTGGAATCTCTC
TCCCGTGGGAAAAGCTTAAAATGCTGTGTATGCTTGAAGTCCATGTCGGC
CTCCCAAAATCATGGGCCAATGGCTTCAGACAATCATATTCACTATTGTA
GCATATGCGGTGCAGCATCTCACCTTAGCTGTTCATCTAAAACCCTTAAA
GATTGCAAACGCGTGTCTATGAGTGGGTATGAGCATGTGATGCACCAGTG
GGCTGTCCGCTGGACGGAGGTTGCAGATCAAACTGAAGAAACTTCCTATT
GTAGTCACTGTGAAGAGCCCTGCAATGGTTCTTTTCTCGGAGGATCTCCC
ATATGGTGTTGCTTATGGTGTCAGCGCCTGGTACATGTTGACTGCCATGG
TAGCATGTCAAATGAAACTGGTGATATATGTGATTTGGGACCATATAAAC
GATTGATACTATCCCCACTATATGTCAGAGAAGTGAACAGGGCTTTACAG
GGGCGGTTATTAAGTTCAATTACACAGGGGGCCAATGAGATTGCATCTTC
TGTCCGAGCTAGTATTAGTAGGAGTCAAAGTAAAAAGAGCAAGCAGGAAA
ATGTAGCCTCAGCTGACACAGTTAACAATTGTAGTGTTGGCAACTCGTCC
ACGGAAAGTACAGACAACAATGAGAACAGAAATGCTTCTCTCGGAGTTGA
AGAAAATTGTAACAGCACAGTAAGCATAGAGGGCACGGATCAAAATCAAA
ACGGTGGTATTGTGAAGATATTAGATTCGAAGCCAAGTTTTAAGAGGAAT
TCATCTATCAACGAGAAGAATGAGTTCCACTTGACTGGGACAGAACAACG
ATACGAGTTAACTGATTTACCTTCAGATGCGAGACCCTTGTTAGTCTTCA
TCAACAAGAAGAGTGGGGCTCAGCGAGGAGAGTCACTCAAGCTCCGGTTA
AATCTACTTTTGAATCCCATTCAGGTCAGTAGCTGATATGAAGTGGATAT
TTTATATCTGAATTTAATGCATCTCGTTTACAGTTATCTCTGACTTGTTT
CGTGAGATGAGACCTATCTTTAAGTAGATTATTAAGCTTACAAATTCAAT
TTAGTAACCTTTGTACGTGGACATAGGATTAATTCTCTACCATTTGTTAG
TATTTTAATATGATTGACACAGTTCTAGATATAGGACGATACTTGCATTA
ATAAGGAAATTAGAATATATTAGTTTGTGTGTCTGAAGATCACACAGTTT
TCATCTCAACTCTGTAATCTTGTTTAAGATAGATACGTGAAACCTAATCT
GTCACGGGCATTGATTTTAGGTATAAAAAAGCAGTGCACAGATCGTAGTT
AGCGGTGGCTAAATTAGACCCCACCCGACGAGACCTGTGAAGTACAAATC
TGAGCCCGTGTTTCTCGGGGCGGGTCTGCTTGAAAAATCGGGTCATTTTC
GGTTTGATTTCGGGTTACACGAAACTAACTCGAAATTACCCGAAGTTATA
TATGCATATAATATAAAATGATATATATTTATTAAAAGATATCATTTATG
TATTATGTATTGTTTATATATTATTATTTAAAAATTATGTAAATTAATTT
GCAATATTAATATAATATATATTTAATTATTTATTATTTATTATTTGTAA
TATATATATTATTTATAGAATTGTTATTATTTCGGGTCGGGTATTCTGAC
CCAATAAAGTTTCGGGTTAGGTCAAATTTCTAATAGTGGCCTGAAGTGCT
TGAAACTCTAACTTGATTCTTAGCTGAGAAATGAATATATTCAATAAAAC
TGATTCCCTTGTGCGTAAGTTCACTTAGATTTAAAGTTAAGTTGCTTGAA
ATTTGTACGTGCAGGTTTTCGAGTTGAGCTCCTCGCAGGGACCTGAAGTT
GGACTATTCTTATTTAGGAAAATTCCTCATTTCAGAATTCTTGTATGCGG
CGGAGACGGCACTGTGGGATGGGTTTTGGATGCTATAGACAAGCAGAACT
ATGTGTCTCCTCCTCCAGTAGCTATTCTTCCTACTGGAACAGGAAATGAC
TTGGCACGAGTTTTGTCTTGGGGAGGTGGTTTAGGTTCAGTAGAGAGACA
AGGTGGGCTATGTACACTGTTGCACCATATAGAACACGCCGCTGTAACCA
TTCTTGATCGATGGAAAGTTTCGTTTAACCAAAAAGAAAAACAGCTCCGG
CCTCCAAAATTTTTGAACAATTATCTTGGTAAGCTGAAGCTGATCAGTAT
TATTTTGAGTAATCTATTACAGGTGTTTATGTATCCGTCTTGGTTGATTA
GATCTTGGATTTGAGTCTCGACATATGTTAGAGTAAATTTTAATGTATAT
ATAGGGGAGGGTTCCGGTACAAAGTTTAAGTTACAGGTCTGGGTCCTTCA
CAAACGATTGTGGCATCATACTACCAACTGATTTTTTTCTGCTGGGGCAT
TAAGCCTAAATTTTTGTTGGGAATGCAGGGGTTACAGTGTCTACCAATGA
AAAAAATGACTCATTCTAGGGTTTTTATCGTTGAGCTGAAAAAAAAACTG
TTTGTAGTATGTTATCAACAATCGTTGTGTCTGGACCAATTGCCTAATAT
ACAAACTTACAAACTTTTTGAACTTTAGTTTTTCAATTGGTAATATATAA
ATAACTGAAAAAGATTACCAAATAAAAAACATGTTCTTTATTTTTTTGTG
ATAAATTGGATTCATTTTTGTAACAGTGTTCAAAAACATTTATAACTTGA
ATTCAACATTTTTTGTTGAACTATAAATAAACTTACTTTGAGTGAAATAT
ATAACTACTTTTAAAAAGATATAATTTAGCAACATATATTATATAATTAA
TATAATAAATATTTGATAAGTCTGAACTCTAGTTTTGTATTGGTGAACCC
CAGAAGGATAATATAAAGATAAATAAAATGTTTTCAACACAATAGTAACT
AAAGCAATAGTAACTAGGAATTGCAGTTTAACATATGACGTTGAACTTGA
GTTATAAGCACGTTGAACACATGTTATACAAAAAATTTATTTATCTATTT
TTAGTTGAAGGTTGATGTTTTTCGTCAATTTTTTATATTTGATCAGACTA
AATATATCTTTTGCCATACAATATGGAATTGTCGTCTGAAGCATCTGCCT
TTTAAGTCATGTTCCTTTGACAAATTATCTTAAGCCAGGTTCTCTTCTTG
GTGAGCTATATAATTTTTTTTATATGCTTCAATAATAAGTTATGTTCTTT
CACTACACACATCGTTGTCACTAGAGTACAAACTATTGCAGGGGTTGGAT
GTGATGCAAAGGTTGCTTTGGAAATTCACAATCTGAGAGAAGAGAACCCT
GAGAAATTTTATAATCAGGTCAATGACTAACTTACACTGAAGTTCTATTT
TAAAGTATATACAGGTGACACGTGGAAATCGAAATATCAATGTGAACGCT
TTGCATCCTGTAAATCTAAGTTTTCTGCTGTCATCATTTTCTACATTATG
ATGCCAAACAGAGTCCTTTCAGTTAAATTGTTAAAGCATGGATCCTGGAA
AATCATCTGCATGTGCAAGCCTTTTATCTTGTAGGCCTAAATCATTTTTT
ATGTAGCATGGAATGCATAGAATTGGCAGTTTAAGTTATTTCTATACTTC
TAGTCTACAGGATAGAAATGATTACTTGTTAGCATTTCATTTGCTTCCTT
TCCCAGCTTCCTGCTGAACTATATCTGATGACCATGGCGAACTATGGGAG
GCTTTGGATTGAATATGCTTTACAAACATAATGTGGTTCATAGTTGGTTT
TGCCATGTATAGTGATTGAATACATCACCATAAATTATGGTGATGTATTC
ATTTTGCTGGCTCCCTATTCCCTCCCTCCGTGCTTTGAATTTTTATACCT
AATAGAATGATAATTAATGGTGTATTTTAATTACTTTCTACAAATTATTA
ATGGCGGAATTTGATATTAGTTGTTAGGTCATACTGATACTCTATTGGAA
AATCATTTCAAATAGTGATTTGAAGGTATTGTGTGTATTTATGATTTTTA
ATAAGCCAAGGTAATATATTAAGATATAGAGTTTATCAAGAATCTAGTTC
TTGAAGGTCTATGACACTATTGCAGTTTATGAATAAAGTTCTCTATGCAA
GAGAAGGCGCGAAGACTCTTATGGATAGGTCATTTGCAGACTACCCTTGG
CAAGTTCGAGTAGAAGTGGATGGTGCGGAGGTAGAGGTTCCTGAGGTAAG
TGCAATTGATCTCTAATATCCCTGTTATCTGCATACTTCAAATAAGCATT
TGATCTGCCCTTTTATTTTCTTATAGTATCTACTTGGCATGTAATGCTTT
TCAAGATTCAGCTTAATTACTTCTGTATATCTGACTAAGAATATTTTTTT
TAATAATTTGTTACAGTGTTGGCTTGGTACATTACTCTTGCAGACAATGT
CTTCTAGAGCAAGATTTTATACTCACCAAAACTATAGATACAAAATTTTT
AGTCTAGTTAAGAGAATTTAAAATAATAATCAAGTCTTGATTCATCTAGA
TTTTGAAACTGATATTAGTAGAGGTGAACATTGATATTTTGTTTGTACTA
TAATTTGTTAATTTTGATCCGAACTTGGACATGCAAAGTTATATAAAGTT
AATTTTGCTATAGGCTTGCACCATTTCATTTCTTCTGGCTACTCAACCGT
ATCACTATTTTTAATTTATTTTCTGTTCGCCTCCTCTAGAGCTGTGCCTG
TGTTAGGAACTATAGTGTGAAGGGTGTTAGTAAGGGCATAATAGTCCATT
TACCTATAGCTCAATAATACTACTATATGAAGAACTCAGCCAGCTGTAAT
TGATACATTGCGTATTATTTTTTGAAATGAAAACTAGTTTCCACCTCCCT
CCCCTCCTCCCTCCCCCTTCAAAAAAGTAGTTTCCACGCGTCCCCTTCCT
GTATAACTACTATTATAAAGAACTCAACCAGATGTAATTGACACATTGAA
ACCCCCTCCCCCTCCAGTATAACTACTTACATGTCAAATTATATCTAACC
GCAAGCACCTGTTGTCTGTTGTTGGTGTAGATAGTGGCAAATGTTGCTCG
TATCCTTAAGGAGACGGGTTAATTTTTGTTTAATTACTATCAATTGTTTT
AAGAGGAAGACGATTATAGGAGAGTTTAAACTAACTAATAGTTATAACTA
AATTAACACTAACTACATAGACACTGAATTAATATATTAAGAATCGAGGG
GAATCACATCCACCATGCTTACACATTAACAGGCTTCTAAGCTAACGTAA
TTAAAGTGGTCACACACTAGAGTTTGTTAATCTCTCTAAGTATTGATACT
CATGAGACATGCTTACACAAATAATTCCTTTTAGTAATTCAAATCAGGTT
ATTAAAGCAATTTAATCTCTCTCGAGTATAAATGCTCTCAGAAATCCAAT
GATGTCCACGTATTTGAATTCAGTTCTGTCAATCGTGTGTGTGCCTCTAG
TAGTATATCTATCCATTATACTCATATTTGCATGGATTCAATTCATAATA
TCGGCCAATTACACAAATTAATATAAAAACATAGATTAGAGTTAACCAGA
ACCTATACCACTGTTAAATTCATGCCAATATTATAATGCAAACATGGCTT
CCCCTTGAGCCCTAGAAACAACTACTAATAGCTAGAGCAAGGCCAACAAC
TTGCCTAAATGAGCTCGTAAGTTCAAATATAGGGAATCTGACATAAAATG
GTGCTCGAACAATATAGTATTTTAGTGATTTCCTAATACCGAGGACATCG
TCAAACTCACTAGTCGTCCCCTATTTCAATTTTTGAAATAAAATTTTTTT
TTTTTCTCTTCTACACTCTTGGTTCCCACTATTTTATTCTTCTTACATTT
TGGGTCCCAGCTATTTCCCATTTACTAGTTCAATTATATTGCTATAATAA
TAATGTGGAATGATTTAAAGGATTGTTGTTGGACTTGACATACCAAATAG
TGATCCTAAATCACTAAGGTCCTTTATTTTATAATATATAGAGGGAAAAA
ACTAGGACACTATTGGACTTGCCCTTAAACACGTAATTAAAGTAATATAA
TCAAAAGACATAATTAAACTATTAAGAATAGATAGATAAGAAAACCTTTA
ACTTTCAATGCTTTCGCAAGAAGATCCATTGTCTCTCGCATAGTCTCCCT
CTTGTATACTCTCATAATCTTCCTAGTATTATACCGCGATACAATTAAAA
TCTGATCCCATATCTCTATTGATAAAAGTATTTTTAATGTTTTGCCTTTT
GTATTGTCTCTGAATCGAAGAGAATTCAGTAAGCGTCGCGTGGGTTGTGA
GATAATCCAAATATGATGTATTCCTAAACCCTAGTTATTGACAAGCTGCC
TAACGTACTTTTTTGTAATCAAGATATCAGCTCCTTTGTTATATGTTTGC
TCTAAATTGTTTCATTACACTGCAGGATGCAGAAGGTGTTCTTGTCGCCA
ATATCGGAAGCTATATGGGTGGTGTAGATTTATGGCAAAATGAAGATGAA
ACGTATGATAATTTTGATCCTCAATCAATGCATGATAAGATGTTGGAGGT
CGTGAGCATAGCAGGAACATGGCATCTTGGAAAGCTTCAGGTAAGGTCAT
TTCTTACGGAATTCCAAAATTTTGCAGAGCAATGCAATTAGAAGTTTGAG
AAACTCATCAGTGATTTTAGATACTTGTGTTATTCAAAATCTGAAATTTA
TGTTTTTAGCCTTGACATAAATAAAAATGGATTGTTATTGAGCACTCATG
GACATGCATGAATATGGAAGGCCATTTACCAATGGGGAAGCATGTTATTG
TCTCTTACAGTAATACATGCAGCACCATCCTGTATTCAACACTCTGGAAG
GCTCATATAATTTTTAATTTTTTTATATGCTATAACATGCTATAGCATCT
AGCAAGTGTTCATACACATATATATATTAGTTGATAGAGGTTCAAATAGA
CAAAGAGATTGACTTACTGGGGATCAAGACCCCTATTTTATAATAATGTT
GGGTTCATTTCAGATTAATTTCCTCAGAGATTTTTTGATGTCGGTTTGAC
TGGGACAGGTAGGACTGTCTCGGGCTCGAAGGCTAGCACAAGGACAGTCG
ATAAAAATCCAGCTTTTTGCTGCATTGCCAGTTCAAATTGACGGAGAGCC
ATGGTTGCAGTCACCATGTACATTGACCATATCTCATCATGGACAGGTCG
CTTCTTTGTCTTATTATCAGGCCTACTTTGAAGGAAGATCAGACTTAGTA
CTTGATCAAAAAGGAGTCTTTTAGGTTTTCATTAATTACTATACTTAATA
TTATCTGAGAATGGAAGTGTTAAAAATTAGTCCCGTTCCACAGATTTTGT
TTTTATGTGTTAACTTGTTAGGTATGGAATCTTGAAAAGAAATCATAAGA
AAAAAGTATAAAACCATCCTTTGAGGGTTCATTGTTCTAAATCCAGCCGT
AATCAACTCTTTTTTCAAGGTAGATTCTCGTAACATTATGATCTAACTTA
TATTTCCCTGAAAGCCCATGTATTGAATCAGGTAATAAAATTAAGCTCTG
CAACTATGATGGAGCTAATGTTTGCACTATGGTGATTTCTGCCTTTTAGT
TACATATTGATTACCATCTTAAAGTTTATTTTTCTTTGGTAATATGGTAT
TAATCTTTTCTTTACATATGCCTTCTTCCACCCCTCAAACTGTTCTCTCA
CCCATCACCAACCCGATCAATTAAGTGAAC

Sequence Length:

10030

Sequence Checksum:

be22f671b6cc5221f953410f4dee2113

View location in JBrowse:

DCARv2_Chr7:32429817..32439846+

Cds:

>DCAR_026010cds ATGGATGATGATCGAGAACCTGGGTTTCCGTCTCACATGGTTGAATCACG TCTTTTTACTGTCTCTTGCTTTATTGCTGGACTTATAGGAGTCCTCACTA TAGCCTACACTGCCTTCCAATGGAGGAGAAATATCAATCTAGGTTGGATG AAAGCTATAGCCAGGTCAAAGAAGAACCCGAAGACCAGGAGCAAAGCTCC TGTAGCTCCTCATACTTGGGTTTTGGAATCTCTCTCCCGTGGGAAAAGCT TAAAATGCTGTGTATGCTTGAAGTCCATGTCGGCCTCCCAAAATCATGGG CCAATGGCTTCAGACAATCATATTCACTATTGTAGCATATGCGGTGCAGC ATCTCACCTTAGCTGTTCATCTAAAACCCTTAAAGATTGCAAACGCGTGT CTATGAGTGGGTATGAGCATGTGATGCACCAGTGGGCTGTCCGCTGGACG GAGGTTGCAGATCAAACTGAAGAAACTTCCTATTGTAGTCACTGTGAAGA GCCCTGCAATGGTTCTTTTCTCGGAGGATCTCCCATATGGTGTTGCTTAT GGTGTCAGCGCCTGGTACATGTTGACTGCCATGGTAGCATGTCAAATGAA ACTGGTGATATATGTGATTTGGGACCATATAAACGATTGATACTATCCCC ACTATATGTCAGAGAAGTGAACAGGGCTTTACAGGGGCGGTTATTAAGTT CAATTACACAGGGGGCCAATGAGATTGCATCTTCTGTCCGAGCTAGTATT AGTAGGAGTCAAAGTAAAAAGAGCAAGCAGGAAAATGTAGCCTCAGCTGA CACAGTTAACAATTGTAGTGTTGGCAACTCGTCCACGGAAAGTACAGACA ACAATGAGAACAGAAATGCTTCTCTCGGAGTTGAAGAAAATTGTAACAGC ACAGTAAGCATAGAGGGCACGGATCAAAATCAAAACGGTGGTATTGTGAA GATATTAGATTCGAAGCCAAGTTTTAAGAGGAATTCATCTATCAACGAGA AGAATGAGTTCCACTTGACTGGGACAGAACAACGATACGAGTTAACTGAT TTACCTTCAGATGCGAGACCCTTGTTAGTCTTCATCAACAAGAAGAGTGG GGCTCAGCGAGGAGAGTCACTCAAGCTCCGGTTAAATCTACTTTTGAATC CCATTCAGGTTTTCGAGTTGAGCTCCTCGCAGGGACCTGAAGTTGGACTA TTCTTATTTAGGAAAATTCCTCATTTCAGAATTCTTGTATGCGGCGGAGA CGGCACTGTGGGATGGGTTTTGGATGCTATAGACAAGCAGAACTATGTGT CTCCTCCTCCAGTAGCTATTCTTCCTACTGGAACAGGAAATGACTTGGCA CGAGTTTTGTCTTGGGGAGGTGGTTTAGGTTCAGTAGAGAGACAAGGTGG GCTATGTACACTGTTGCACCATATAGAACACGCCGCTGTAACCATTCTTG ATCGATGGAAAGTTTCGTTTAACCAAAAAGAAAAACAGCTCCGGCCTCCA AAATTTTTGAACAATTATCTTGGGGTTGGATGTGATGCAAAGGTTGCTTT GGAAATTCACAATCTGAGAGAAGAGAACCCTGAGAAATTTTATAATCAGT TTATGAATAAAGTTCTCTATGCAAGAGAAGGCGCGAAGACTCTTATGGAT AGGTCATTTGCAGACTACCCTTGGCAAGTTCGAGTAGAAGTGGATGGTGC GGAGGTAGAGGTTCCTGAGGATGCAGAAGGTGTTCTTGTCGCCAATATCG GAAGCTATATGGGTGGTGTAGATTTATGGCAAAATGAAGATGAAACGTAT GATAATTTTGATCCTCAATCAATGCATGATAAGATGTTGGAGGTCGTGAG CATAGCAGGAACATGGCATCTTGGAAAGCTTCAGGTAGGACTGTCTCGGG CTCGAAGGCTAGCACAAGGACAGTCGATAAAAATCCAGCTTTTTGCTGCA TTGCCAGTTCAAATTGACGGAGAGCCATGGTTGCAGTCACCATGTACATT GACCATATCTCATCATGGACAGGTCGCTTCTTTGTCTTATTATCAGGCCT ACTTTGAAGGAAGATCAGACTTAGTACTTGATCAAAAAGGAGTCTTTTAG

Pep:

>DCAR_026010pep MDDDREPGFPSHMVESRLFTVSCFIAGLIGVLTIAYTAFQWRRNINLGWM KAIARSKKNPKTRSKAPVAPHTWVLESLSRGKSLKCCVCLKSMSASQNHG PMASDNHIHYCSICGAASHLSCSSKTLKDCKRVSMSGYEHVMHQWAVRWT EVADQTEETSYCSHCEEPCNGSFLGGSPIWCCLWCQRLVHVDCHGSMSNE TGDICDLGPYKRLILSPLYVREVNRALQGRLLSSITQGANEIASSVRASI SRSQSKKSKQENVASADTVNNCSVGNSSTESTDNNENRNASLGVEENCNS TVSIEGTDQNQNGGIVKILDSKPSFKRNSSINEKNEFHLTGTEQRYELTD LPSDARPLLVFINKKSGAQRGESLKLRLNLLLNPIQVFELSSSQGPEVGL FLFRKIPHFRILVCGGDGTVGWVLDAIDKQNYVSPPPVAILPTGTGNDLA RVLSWGGGLGSVERQGGLCTLLHHIEHAAVTILDRWKVSFNQKEKQLRPP KFLNNYLGVGCDAKVALEIHNLREENPEKFYNQFMNKVLYAREGAKTLMD RSFADYPWQVRVEVDGAEVEVPEDAEGVLVANIGSYMGGVDLWQNEDETY DNFDPQSMHDKMLEVVSIAGTWHLGKLQVGLSRARRLAQGQSIKIQLFAA LPVQIDGEPWLQSPCTLTISHHGQVASLSYYQAYFEGRSDLVLDQKGVF*