DCAR_028695 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_028695

Identifier:

DCAR_028695.gene

Locus Tag:

DCAR_028695

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 6 relationships.
Relationships
The mRNA, DCAR_028695, is a part of gene, DCAR_028695.
The genetic_marker, MK009800 8_2589867, is located in gene, DCAR_028695.
The genetic_marker, MK018774 8_2589895, is located in gene, DCAR_028695.
The genetic_marker, MK018773 8_2589931, is located in gene, DCAR_028695.
The genetic_marker, MK010925 8_2590857, is located in gene, DCAR_028695.
The genetic_marker, MK018772 8_2590907, is located in gene, DCAR_028695.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_028695	DCAR_028695.mRNA	mRNA	DCARv2_Chr8:2584343..2594685

Sequence:

ATGAGCATTGCTTCGGAGACATTAGAAGCTGCAATATCAAGTAGTGATGC
ATCTGTCAAGTCTTCGTCGCTTAGGGTAGCTGAAAGAATTGTTGATTCTT
ACCCGAAAAACGTGTTTTCTTGGTTTCTTTCGTGTGTTGTTTATTCTCTG
TTGAACCGGCCTATTGAAGGTGCTTTGAGTTTGTTGGAAGTGTTTTATGA
TGACCCTTCTCTTGCTAGATCAGAAATATCACCTGAATTATTCGAGGGGT
TGTTTTTACGACATTTTGTTCGAGTTCTTGAATGGTATAATGAGCAAAAG
TCAAGAATTCTGTCTTCTTTGTGCAAGGACTCTGGTTATGACAGTGATGA
TCATTCAATTTGTGTGGAGTCTGTTGGCGTTTCCTGCACGACTTTGTTGT
CGAAGATGAATGGCAATCAGGCCTCGGAGTTGAAGGAATTGGAGAGGAAT
TATGAGGATGTTCTTGATGAGAATTGTAGGGTGTTTGTTTGGTATTTTAA
GGAGGTTTTGAAGAATGAAGATGAATATGTAGTGATTGATCCGCCCTCTT
TGGTTCTGGAATTGACAGATAGAGAGGGCGGAATTGAGGGTAGTGATCAT
GACCCGGTGGAGATTGATACTGATGGACCTGGATTGAAGAATGGACGGTA
TAATGTAATGATTATTTTCCAGATTTATTATTTAATGTCTGTTTTACTTT
TCTGTGTTCAGTTCCTTCTTCCGATAGCTAGCTTTGCAGCCTTAATTTCC
CCAGTAGGATTAAATTGGAATAGTGCATTTTGCTCGTAGAGCAGAATTTG
GGGAGGGTAATATGTAAACAGATCATTGCTTTACTCCTAGAGGCAGAGAA
GTTGTTTCCATGAAGATCCCAGCTTAGACAATTCCCCTAGAAGATCGATA
TGTTTTATTCTTATAAGTTAATATCATCAGTAATTTAATCATCTTCGTTT
CCAGTATAGATAAGTCGTGAAGTTCTCATCAACATCACCTTTCGTCTTAA
TTTGGAACATCAACTAGTAATATCTTAAGGCATATTTTAAAGCTTAGTTT
TGATATCCTAGTAGAACTGAGAAACAACATCATGTAAATGTGTCATAAAG
AACTACAGAGAGGAAGATAATGCGAAGTAAAAACTATAGAGGCCATTGGT
TCGGTTGCCTTGTCTCCCTGACCTTCTAAACTACGTGGGGTAGAATTTGT
GTAGTCAATAGCGGTCCATTGGCCTTGTCTCCCTGACCTTCTAAGCTATG
TGGGGTAGAATATGTGTAGTCAGTGGCGGAACCACAAATTGAAATGACCA
GAGCTGAAATCTAAAATTATTATTATTTAATTGTTTATATGAAATCAGTC
GGGGCTTATATGGAGAAATCTGCTAAAGTTCAAGGAAAAAACTATGACTG
AGAATAAAAGATCCATTGATTTTTCTAACTCAGCCCAGGCTTCAGCCTGC
ATTAGCCTTCCCCTAGTCCCGCCCATGTGTGTAGTAAGTGGAAGCTTGGT
TTCAGTGGAAGAAAGAAATTTGCCATTAGGCCTTTCTACAACGGTTGATG
GGATTTCTTGATACACATGGTCCCTCAACCCAGAAGCCGCGTTTTTAAAT
ATCTGCAGGCAAACTATATTTCTATATTCTTTTCTTTAATACCAAATATA
GCAATTTTTGCCACTATTTCAGTTAAATTAGGTCTGATTGAGGTTCATTA
TTGAGACTAATCGAAGATTTAGAAAGATTACATGTCAATGTTTGTATTTG
ATTAATACTGAAGCTGTATTGACTTCATTGAACAAATAAGGGACAAAGTC
TGAATTGGCCCTCCTTCGAAAATGGAATCTCATGTGACATTTAAAAATTT
TCAAGAAATATTAAGCATGTGGAGGATACAACAGACATAGAACAGTTTTT
CTAAATGAACATCTTGCATATTTAAACCTTTTCTGTTGGTGATGTTATAG
TTGAATTATATAAACCTCTGGGCTCTAGCTAACATGTGAAATATGCTCAT
GTATGCATGTGCATTTTGAGTGTCAAGATTTCAGCTCTTTGTTTATAATG
AGATGCAATGATATTTAGTCAACTAGGATTTAGCTTCTTCGGTTGAGATC
CAGTATGGAGATTCAAGATATTGCATTATGATTCACATGTCATTTTAGCT
TCTGTGGTTGAGATCTAGTATGGAGATTCAAGATTTCGCACTGTGATTGA
CATGTTATTTCTCTACTACTTCCTTTCCTGCAGCCAATATGGACCGACGA
AGAAAAACATGTATCAAGAAATCTCTCCAAGTTTCCATCCTTTTTCCCTG
AAAGGGTCTCTTTGAAAGTCCTGACTAACCGGGGATCGTTAAAGAGATCC
ATGGCATCGTTTAACAAAGACTGTGAATCTGAACCAGTTGCTGATTATAG
TTATTCTTCTTCAGATTGTGAAGGGAAGAAAGAGGTACTGATATTGACAG
GAATTGTTATTCTTGGACCTTGGTTGACTGATTTACAAAGCTATTCATAT
TAGTTATAATATGTCTTCCAGGAAATGGACCAAAGCAGTTCTTCACTGGA
TTCCAGACAAAGCCAGTCTCAGATTATAGGGTTGGCCAGTTCGACAGATT
CAAGCTGGTATGTACCATTGATACTCTTACGCATAGTTGAAATGTTTTAG
TTTCCATTTTTTTATTTTTTTTTATTTTATTGTCACCAGTTCTCCAGATC
CTGAAATGACAGATACTGATAATCCGCCTGGTGGAGGAAAGCATAAGGCC
CCTAGGGATTTTGTCTGTCCGATAACAAGTTATATATTTGATGATCCAGT
GACTCTTGAGACAGGACAGACTTATGAGCGTAAAGCAATCCAAGAATGGA
TTGATAGGGGGAATTTAACTTGCCCCATTACAAGGCAAAAGCTAAATGGA
ACTCAACTGCCTAATACAAATTACGTGCTCAAACGTCTGATTGCAAGATG
GAGAGAACAGAATTCCAGTCCAACTCCTGTTAAATCTGATAATCAACATC
AGGAAAGTGAACCAAGTTTTAGCAATGGTGCGCCTCTAGCGTCTCCTGAC
AGTGTCATAAGCCAGGCTACTTTTGATGGCGCAGTTGGTGAGCTACGTCA
TGCAATAGAAACCTTATCTATGTCAGAAATATTGAAGGAGTCTGAAATGG
CAGTACTGTGGATTGAGAAGTTCTGGAAGGAAGCCAACATGCAAGCAGAT
ATTCAAACCATGCTCTCAGAACCATCAATTATCAATGGTTTTGTGGATAT
CCTTTTTAATTCTGTTGATGCTCAAGTCTTGAGAGCCTCAGTTTTTCTTC
TTTCTGAACTTGGATCAAGAGACGATAGCGTGATCCAGACACTATGTGGA
GTAGATCCTGATGTTGAATGTGTGGTAGCACTCTTTAGAAAGGGGTTGCT
AGAGGCTGTTGTATTGGTTTATCTCTTAAGAAGTTCTGCTACAAGCTTCA
TTGATGTGGGAATACTAGATTCTTTATTAAATGTTTTAGGAAAGAAAGAG
GATGATTTTGTCAAAATGTGTATAAGGCCACAATCAGCTTCTGTTCTTTT
GCTTAAACAGATTCTTGGAAGTGCCGATGAAATAAGCATATCAGGAGCTC
TGAGCAGTTTTATTTCAGATGAAGTGATTGAAAATATTCTATACAGCTTA
AAAGCCGAGTGGCACGGAGAAAGGTGTGCTGCTGTCAGTATCTTGCTGAG
ATGTATACAGGAAGATGGCAACCGTAGGAACCTTATTGCTCAGAAGGCCG
AACTGGCTCCACTTATAGAAAGCTTCTTGGAGGCAAATGAAAAAGAAAGG
TTTCAGATAGTTCAATTTCTTTCGGAGTTAGTTAAGCTGCACAGGTACTC
TTATTCTGTTTCTTTCTCTTGTTTTTAACTAAGCATGTACAATTGTGGCT
ATTTTACAGTTGCATAAAGCATGAACAAAAAATCTAATTTTAATTTTGGG
ATTCTTCAGAAGAATAGATAATGAAAATATACTCCATGTCATAAAGGATG
AAGGTACTTTTAGTACAATGCACACCTTACTCATATATCTGCAAACAGCA
CGCCAGGATCAACGTCCTGTTGTAGCCGGTCTTCTTCTGCAACTCGACAT
TCTGGTTTGAACCTCTCTCTGTCTTGCATTTTTTTCAAAATTAAAAAATG
TGAGTAAGTTAACCTCCAGTTCTGTACTCTTAGATGAAGCCAAGGAAGGC
AAGTATATACCGAGAAGAAGCAGTAGATACTATCATCTCGTGTCTTAGAA
ATTCAGATTTCCCTGATGCGCAAATAGCTGCTGCTGAGACAATTTTGGTC
CTTCAAGGGAGGTTCTCTTATTCTGGAAAGTCCCTAGCCCGAGATTTACT
TCTCAGACGCGCAGGTCTTCACAAAAATTACAAGTCTCAGATGCTAAAGG
ACCAGGATATGATGACTTCTCAGAATAGTGGAGAAATGATGGTGAGCTCG
CATTATTTTGTTTTATGGTATCGGTTCAGAATTTACCAGTTAGAAGTTCT
CTTTTAGTATTTCATCTATTCAATCAATAGGAAGAGGAGAATGCTGCTGA
GGAATGGGAGAAAAAAGTGGCATTTGCCCTGGTGAGCCATGAGTTTGGTC
TACTGTTCGAGGCTTTGGCAGAAGGCTTAAAGAGTACAAATGCAAAGTTA
CATTCAGCATGCTTTGTATCAGCTACCTGGCTCGTCGATATGCTTGCTAG
ACTTCCAGATACTGGAATCCGAGGAGCAGCCAGAGCCTGCTTGCTCGAGC
AGTTCGTCTCAATCTTTAAGTCTGCGAAGGACATAGAAGACAGAGCTGTT
TCCATGCTCGCTTTAAGCAGCTTTATCCATGAACCTGGTGAGTATTTATT
TATCTAAATTATGAGTAGTTGTGTGTAGACTCATTAATGTATATAAACTA
TCCAAAAGCAGAATACATGTACTTCATATTAGTTTGTCACTGACTAAATC
CATTTTAATATGGAAAATGGAGTTTCAGAGGGGCTGCAAGATTTAACATT
ATACATGAAAGATATCCTGAAAGGCCTGAGGGAACTTAAGAAATTCTCTG
TAGTGGCTTTCGAGATGCTAAAAAGTCTAGCAGATGGAGATGACTCTAGT
AATGTTAGTTTCTCGTACTCTCTTGCAAATTTCTTGAAAATTGAAAGACA
TTATTCTAATCTTAGACTAATTTGGTTCCTTCAGGAAATGTGGAATCATA
AAGAACTAGTTCAAGAAGATTGCAGTGCAAATGGTGAAGTTCTCTCAGTA
GTATGCTTCAAAGACAAAATCTTTTCTGGCCATTCGGATGGCACAATCAA
GGTAACTAGGCAGCACATGTTTAAACTATACGACTGATATATCATGTATC
CTTGTCTTTTTTTCCTGTTCTGATGAAATCTTTTATTCCCATTCGCTGCT
TAAGGCGTGGACTGGTAAAGGAAGCATTCTGCATTTAATTCAAGAGACTC
GAGAGCATACCAAGGCAGTTACTAGCTTGACAGTTTCAGAATCAGGGGAT
AAACTATATAGCGGCTCTCTTGATAAGACCGTGAGGGTAGGCTATATTCT
TTCTCAAGGCCTACATTCTCAATGTATCAGTTTCATTGCTGAGAGTTTGT
TTTCTTGTGAAGGCCTGGAATGTTGACAGTGAAGGGATGCAATGTGAACA
TGTCTCTGAAATGAAGGACCATGTTAATAATCTAGCAATTGCAAACAACA
TCTCATGTTACATTCCTAATGGGGCTGGAATCAAAGTAATGCACAGTGAT
ACATTTCTATTAAGCAACTAAGTTGGTTTGTATCTGTCCCCTTAACTAAC
AAGACTTAGCTTATATTTCTATTAGGTACACTCACTGAATGGAACATCAA
AATTGCTGAATCCGAAAAAATATGTAAAGTGCTTGGTACTTGTACAAGGG
AAGTTGTTTTGCGGATGCCACGATAACAGCATTCAGGTAGCACAGATAAC
AACAGCCTGCTTGTTGGAACTGTTTATTGTTTTATTCATTGTTCTTAGAC
TGAATTAATTGATATTTGCAGGAAATCGATTTGGAAACAGGGGCACTCTG
TACCATCCAAAGTGGCTCAAGACATTTTATTACCAAGGCAAATCCTATAT
ATGCACTGCAAGTTCATGATGGGCTAATATATTCAGCTAGTTCTCCCTTG
GATGGAGCAGCAGTGAAGGTACCATTACATACATTTTCGACTAATGGCCA
GTAATTAATTCATGCCTATCCAATGGCAAAGATGAGGAACATACTATTTC
TTTTTCTTTTTAGTGTTGCATAACTATGATCATAACAAAATCATAGTGGT
TGATTATACTAAATATTGTTCAATTCATGTGCTTCAAGATATGGAGTGCT
TCGACTTATGATATCATTGGATCAGTCCCATCAACACTGGAAGTTCGGTC
CATGGAGGTAACCTCAGATTTAATTTATTTGGGATGTAAAGGAGGGATAG
TGGAAGTTTGGTGCAGAAAGAAACTTGACAAAAAAGAAACGCTGCAAACC
GGCACAAATGGAAAGGTTCTGTGCATGGCCTTAGATAGCGATGAAGAGGT
TCTAGTAATTGGCACTTCCAATGGCAGGATCCAGGTAACAGATATAAATT
TTTCGTGTCAAAAATGCAAGTCAAAACAAAAATTTCAATATCAAACAGTT
CTATATGACTGAGAATCATGCAGTACCATTAAATTCATACAAATTAGTAA
CTACTAACAAGTGTAAGAAGTATGTCAATCTCTTAACTAATCTTCTGGAT
ATCAGGCATGGGGATTAGGCTGATTTCGACGCCATATATTCATGGAAGAT
GTGAAGACATGCAATCAGAAAAGTTCAATTCGACATTCTTTCTGGAGAAA
TAAGCTTCTCCACATGACAGCTAATGCTCCAAGGAAATGTATATAGTATG
TGCAGTAGAATATGAAAGAAAGATAAGCTTCATTCTTTATGTGTTTCGAC
TTAATATTTGCTTATTAGCAAGAGCTGTACAGAAACTTCACTAATATGTG
CAGAATATATATTCTTTGATTAGTAGTGCTGCACTTTCTTGATTCGTATT
TAACCTGGAGATTTGTATTAACAATATTGTTAATATTTTTGTCCTCAGAT
GTCTGAGTGAAGAACAAAATAGCTAGCTAAAGTACGATTAATTTATCAAA
AACTTCATAAAGATATGTTAAAGTCTCGTAGAAACATCTTTATAAATGTA
TGAATCGACCAATGTATAACGATGTAATAGGAGAATCATAGCAGAAAAGA
TGGTGCAAGGGCATCTCATCGACGTCAAGTGGTTGATGAATAATCATAAT
GCAGATGAATCTGATTCCGGAGATGACCATTAGTTAGCATACTGCTACTT
TATACTTTGTAATATAACAAACTTCATTTTATTGTGACATACATGGGAAA
AGTTATGGAGATCACTATTTTATCGGAGATCTGGAGACTATATATGTTGT
TCTTGCAGATCATTACAAACATACTGTTCTATAAACTATTATGTTTTGCC
TGAAGAAAATATATGATCTCCACTCTACTATAAAATAGTAGTCTCCATAT
AACTCAACCCGTATTTAAGTACAATCATCCGATGTAAGTTAAGGAGCAAG
TCACCTATACCGAATATGATGTAATGGGAACAAAAATTAAATAACATGAT
GGGAATTTTTTGCCCTTTAACCACAGGGTTACAGGAAAAACCAGATTCTC
CTAGAATAGTAACTTGACCATTTCAACTTGCTACAGGCAATGCCTGCAGA
TCCAGAGCAGTTTGGACAATGACAAGACTGTCGAAGAGCATTACACTTGT
CATAGCTGATTATAAGTTTTAACCCGAGTACATGCTCTAGTCTGTAGTCA
CCGATGATTAAGCCTGGCGACGCTACTTCATGCCTTGTTTTAAACACACT
TGGACTCGTTCCATCCATTCGGGACATTACTAGATTTTTATATTATTTTT
AAGTTTTAACGTTCGAAGAAAAATATTCAGAAAAGCCAAGGTAATGGGAA
TGTCTGTTATGCCAGAAGAAGGTAGTCAATTTTGTAATGCCGGTTTTACA
TCAGATGAATACATGAAGAAAACATAGAAAATTCTACTTGGAATTGCCGA
ATACATATAATACAAAGTACTAAAGGCATCCCCATAATGTTCCTTAATTT
ACTTTAATAACTCACTAACTGCATAGAAATAGCTTTGTCAGATGTTTACT
CCATATCTTAGGTCTTAAGTTCTGCAGAAAACTGCTAAAATTCGAGCTAC
TTATTTGTAATGGAAAAGATGAAGTTTTCATCAGAAATAGTCACCAGAAA
ACTAGGAGGACTTCGAACCATGCCTTTTATCATAGGTGATTTGTTTTGTT
GGATACATGTATTTTCTCAGGAAAAATAAAATTGTATGGCCTAATATTGT
GCTTCAGAAGCTGGAAATTTAGATGGTTTTTTGTTTCTTTGCAGCGAACG
AGGCATTTGAAAAGGTGGCAAGTACAGGGCTTCATGCAAACATGATTCTG
TACCTGGTTTTTGAGTATCACATGGATGTTGTTACAGGAACTACTATTTT
GTTCTTGTGGAATGCCATTGCGAATTTCATGCCAATCTTGGGAGCCTTCT
TGTCTGATTCCTACTTGGGCCGCTTTCGTGTCATTGCTTGGGGCACAGTT
GTTACCTTAATTGTAAGCTCACTACCTTCTTGTCTCAAAAATAATATTCA
TAGTTTTTAATTTTTGCTAATTGATATTAGTCATAATTGATGTTCAGAAT
ACTGATATTCATTTACTTAAATTTTCTCATACAGGGAACTATCATTCTGT
GGTTCACAGCCATAATTCCAGAATTCACGCCTCCTGATTGTGATATTCGA
CAGCCAAGAGATTGTGTGAAGCCAGACTCAGGGCAGCTAGCACTTCTATT
CATCTCACTGGCTGTTATGGCAATAGGGGCTGGTGGAATTAGGCCGTGTT
CTCTAGCATTTGGTGCAGATCAGTTTGATAAGCCTGATAACCCGGAAAAT
GAGAGAATTCTGCAGAGGTTTTTTAACTTGTACTATGCCTCAGTTGGAAT
TTCTCTCATGATTTCAGTAACTGTTATAGTGTATATTCAAAACAAATTCG
GGTGGATTGTGGGATTCGGAGTTCCAGTTGGATGCTTGTTACTGTCAACA
GTACTATTCTTGATTGGCTCTCCTCTTTTTATCAAGATAAAGCCAAACAA
GAGCATGCTTCAAGATTTTGTTCAAGTTATTTCACTATCTTGGAAAAACA
AGCACCTCGCTTTGCCACCCGAACACTTGGATGGCTGGTATCATCATAAC
AAAGGGTCTAAATTTGTTTCACCAACAGAGCAGCTGAGGTATAGGTTTCC
TGTTTATTTTTATACTCTGAGGATGATACTTATAATTTCTCGACTTCTGT
AGGTTCCTAAACAAGGCTTGTATCCGTAGAATTGGAGAACCAGATGGTTT
AACTATAGGGCCAAAGGACAGCATATGCACAGTTCAACAAGTAGAAGAAT
TTAAAGCTCTGATCAGAGTACTCCCAATTTGGTCCACAGGCATCATAATC
GCGGTCACAGTTAACCAACACTCATTTCCAGTACTCCAAGCAGACACAAT
GGACAGAACTTTAGTAGGAGACTTCAAGATTCCATCAGGCTCCTACGGAG
TATTCACACTTCTAACACTAACTATATGGGTTGCAGTATATGATCAACTG
ATAGTACCCCTTATAACAAAGATCACGAAAAGGCCAGGTGGTCTTACCCT
CCAGCAACGTATGGGAACCGGGCTATTTCTCTCCATTGCTGCCACTGCAG
TGGCAGCAATAACTGAGAATATCCGTCGACAACATGCCATCGATGAAGGA
CTAGTAGACACTCCTAAAGGGGTGGTGAACATGTCAGCAATGTGGCTGAT
TCCACAGTATGCTTTAATAGGACTAGCTGAAGGATTCAATGCAATTGGAC
AAATAGAATTCTACTACTCTCAGTTTCCGAAGACTATGGGAAGTATTGCA
GTGGCTCTTTTCGCATTAGGAATGGCCTTTGGGAACTTGTTAGGCAGTTT
GATTGTGGAAATTGTAGATAAAGTTTCCAAGCATGGTGGCAAAGAAAGTT
GGGTTGGAAATAACTTGAACAAAGGCCATTATGATTATTATTATTGGGTC
CTTTCAATACTGTGTGCAGCAAATTTCTTGTACTTCTTGGTGTGCAGTTG
GGCTTATGGGCCTAATGTTGAGCAAAAGGTCTGGAATCATGATGAAGAGG
AAAGCATGGAAATGGAGGGAGATTCAAAGCTATATGAATCCTCAATGATA
TCTATTGCATTATCCAAGCAATCTCCTCTTCATGTATACTGA

Sequence Length:

10342

Sequence Checksum:

590afcfd01c510cf05736a7081317494

View location in JBrowse:

DCARv2_Chr8:2584344..2594685-

Cds:

>DCAR_028695cds ATGAGCATTGCTTCGGAGACATTAGAAGCTGCAATATCAAGTAGTGATGC ATCTGTCAAGTCTTCGTCGCTTAGGGTAGCTGAAAGAATTGTTGATTCTT ACCCGAAAAACGTGTTTTCTTGGTTTCTTTCGTGTGTTGTTTATTCTCTG TTGAACCGGCCTATTGAAGGTGCTTTGAGTTTGTTGGAAGTGTTTTATGA TGACCCTTCTCTTGCTAGATCAGAAATATCACCTGAATTATTCGAGGGGT TGTTTTTACGACATTTTGTTCGAGTTCTTGAATGGTATAATGAGCAAAAG TCAAGAATTCTGTCTTCTTTGTGCAAGGACTCTGGTTATGACAGTGATGA TCATTCAATTTGTGTGGAGTCTGTTGGCGTTTCCTGCACGACTTTGTTGT CGAAGATGAATGGCAATCAGGCCTCGGAGTTGAAGGAATTGGAGAGGAAT TATGAGGATGTTCTTGATGAGAATTGTAGGGTGTTTGTTTGGTATTTTAA GGAGGTTTTGAAGAATGAAGATGAATATGTAGTGATTGATCCGCCCTCTT TGGTTCTGGAATTGACAGATAGAGAGGGCGGAATTGAGGGTAGTGATCAT GACCCGGTGGAGATTGATACTGATGGACCTGGATTGAAGAATGGACGGTA TAATCCAATATGGACCGACGAAGAAAAACATGTATCAAGAAATCTCTCCA AGTTTCCATCCTTTTTCCCTGAAAGGGTCTCTTTGAAAGTCCTGACTAAC CGGGGATCGTTAAAGAGATCCATGGCATCGTTTAACAAAGACTGTGAATC TGAACCAGTTGCTGATTATAGTTATTCTTCTTCAGATTGTGAAGGGAAGA AAGAGGAAATGGACCAAAGCAGTTCTTCACTGGATTCCAGACAAAGCCAG TCTCAGATTATAGGGTTGGCCAGTTCGACAGATTCAAGCTGTTCTCCAGA TCCTGAAATGACAGATACTGATAATCCGCCTGGTGGAGGAAAGCATAAGG CCCCTAGGGATTTTGTCTGTCCGATAACAAGTTATATATTTGATGATCCA GTGACTCTTGAGACAGGACAGACTTATGAGCGTAAAGCAATCCAAGAATG GATTGATAGGGGGAATTTAACTTGCCCCATTACAAGGCAAAAGCTAAATG GAACTCAACTGCCTAATACAAATTACGTGCTCAAACGTCTGATTGCAAGA TGGAGAGAACAGAATTCCAGTCCAACTCCTGTTAAATCTGATAATCAACA TCAGGAAAGTGAACCAAGTTTTAGCAATGGTGCGCCTCTAGCGTCTCCTG ACAGTGTCATAAGCCAGGCTACTTTTGATGGCGCAGTTGGTGAGCTACGT CATGCAATAGAAACCTTATCTATGTCAGAAATATTGAAGGAGTCTGAAAT GGCAGTACTGTGGATTGAGAAGTTCTGGAAGGAAGCCAACATGCAAGCAG ATATTCAAACCATGCTCTCAGAACCATCAATTATCAATGGTTTTGTGGAT ATCCTTTTTAATTCTGTTGATGCTCAAGTCTTGAGAGCCTCAGTTTTTCT TCTTTCTGAACTTGGATCAAGAGACGATAGCGTGATCCAGACACTATGTG GAGTAGATCCTGATGTTGAATGTGTGGTAGCACTCTTTAGAAAGGGGTTG CTAGAGGCTGTTGTATTGGTTTATCTCTTAAGAAGTTCTGCTACAAGCTT CATTGATGTGGGAATACTAGATTCTTTATTAAATGTTTTAGGAAAGAAAG AGGATGATTTTGTCAAAATGTGTATAAGGCCACAATCAGCTTCTGTTCTT TTGCTTAAACAGATTCTTGGAAGTGCCGATGAAATAAGCATATCAGGAGC TCTGAGCAGTTTTATTTCAGATGAAGTGATTGAAAATATTCTATACAGCT TAAAAGCCGAGTGGCACGGAGAAAGGTGTGCTGCTGTCAGTATCTTGCTG AGATGTATACAGGAAGATGGCAACCGTAGGAACCTTATTGCTCAGAAGGC CGAACTGGCTCCACTTATAGAAAGCTTCTTGGAGGCAAATGAAAAAGAAA GGTTTCAGATAGTTCAATTTCTTTCGGAGTTAGTTAAGCTGCACAGAAGA ATAGATAATGAAAATATACTCCATGTCATAAAGGATGAAGGTACTTTTAG TACAATGCACACCTTACTCATATATCTGCAAACAGCACGCCAGGATCAAC GTCCTGTTGTAGCCGGTCTTCTTCTGCAACTCGACATTCTGATGAAGCCA AGGAAGGCAAGTATATACCGAGAAGAAGCAGTAGATACTATCATCTCGTG TCTTAGAAATTCAGATTTCCCTGATGCGCAAATAGCTGCTGCTGAGACAA TTTTGGTCCTTCAAGGGAGGTTCTCTTATTCTGGAAAGTCCCTAGCCCGA GATTTACTTCTCAGACGCGCAGGTCTTCACAAAAATTACAAGTCTCAGAT GCTAAAGGACCAGGATATGATGACTTCTCAGAATAGTGGAGAAATGATGG AAGAGGAGAATGCTGCTGAGGAATGGGAGAAAAAAGTGGCATTTGCCCTG GTGAGCCATGAGTTTGGTCTACTGTTCGAGGCTTTGGCAGAAGGCTTAAA GAGTACAAATGCAAAGTTACATTCAGCATGCTTTGTATCAGCTACCTGGC TCGTCGATATGCTTGCTAGACTTCCAGATACTGGAATCCGAGGAGCAGCC AGAGCCTGCTTGCTCGAGCAGTTCGTCTCAATCTTTAAGTCTGCGAAGGA CATAGAAGACAGAGCTGTTTCCATGCTCGCTTTAAGCAGCTTTATCCATG AACCTGAGGGGCTGCAAGATTTAACATTATACATGAAAGATATCCTGAAA GGCCTGAGGGAACTTAAGAAATTCTCTGTAGTGGCTTTCGAGATGCTAAA AAGTCTAGCAGATGGAGATGACTCTAGTAATGAAATGTGGAATCATAAAG AACTAGTTCAAGAAGATTGCAGTGCAAATGGTGAAGTTCTCTCAGTAGTA TGCTTCAAAGACAAAATCTTTTCTGGCCATTCGGATGGCACAATCAAGGC GTGGACTGGTAAAGGAAGCATTCTGCATTTAATTCAAGAGACTCGAGAGC ATACCAAGGCAGTTACTAGCTTGACAGTTTCAGAATCAGGGGATAAACTA TATAGCGGCTCTCTTGATAAGACCGTGAGGGCCTGGAATGTTGACAGTGA AGGGATGCAATGTGAACATGTCTCTGAAATGAAGGACCATGTTAATAATC TAGCAATTGCAAACAACATCTCATGTTACATTCCTAATGGGGCTGGAATC AAAGTACACTCACTGAATGGAACATCAAAATTGCTGAATCCGAAAAAATA TGTAAAGTGCTTGGTACTTGTACAAGGGAAGTTGTTTTGCGGATGCCACG ATAACAGCATTCAGGAAATCGATTTGGAAACAGGGGCACTCTGTACCATC CAAAGTGGCTCAAGACATTTTATTACCAAGGCAAATCCTATATATGCACT GCAAGTTCATGATGGGCTAATATATTCAGCTAGTTCTCCCTTGGATGGAG CAGCAGTGAAGATATGGAGTGCTTCGACTTATGATATCATTGGATCAGTC CCATCAACACTGGAAGTTCGGTCCATGGAGGTAACCTCAGATTTAATTTA TTTGGGATGTAAAGGAGGGATAGTGGAAGTTTGGTGCAGAAAGAAACTTG ACAAAAAAGAAACGCTGCAAACCGGCACAAATGGAAAGGTTCTGTGCATG GCCTTAGATAGCGATGAAGAGGTTCTAGTAATTGGCACTTCCAATGGCAG GATCCAGATGAAGTTTTCATCAGAAATAGTCACCAGAAAACTAGGAGGAC TTCGAACCATGCCTTTTATCATAGCGAACGAGGCATTTGAAAAGGTGGCA AGTACAGGGCTTCATGCAAACATGATTCTGTACCTGGTTTTTGAGTATCA CATGGATGTTGTTACAGGAACTACTATTTTGTTCTTGTGGAATGCCATTG CGAATTTCATGCCAATCTTGGGAGCCTTCTTGTCTGATTCCTACTTGGGC CGCTTTCGTGTCATTGCTTGGGGCACAGTTGTTACCTTAATTGGAACTAT CATTCTGTGGTTCACAGCCATAATTCCAGAATTCACGCCTCCTGATTGTG ATATTCGACAGCCAAGAGATTGTGTGAAGCCAGACTCAGGGCAGCTAGCA CTTCTATTCATCTCACTGGCTGTTATGGCAATAGGGGCTGGTGGAATTAG GCCGTGTTCTCTAGCATTTGGTGCAGATCAGTTTGATAAGCCTGATAACC CGGAAAATGAGAGAATTCTGCAGAGGTTTTTTAACTTGTACTATGCCTCA GTTGGAATTTCTCTCATGATTTCAGTAACTGTTATAGTGTATATTCAAAA CAAATTCGGGTGGATTGTGGGATTCGGAGTTCCAGTTGGATGCTTGTTAC TGTCAACAGTACTATTCTTGATTGGCTCTCCTCTTTTTATCAAGATAAAG CCAAACAAGAGCATGCTTCAAGATTTTGTTCAAGTTATTTCACTATCTTG GAAAAACAAGCACCTCGCTTTGCCACCCGAACACTTGGATGGCTGGTATC ATCATAACAAAGGGTCTAAATTTGTTTCACCAACAGAGCAGCTGAGGTTC CTAAACAAGGCTTGTATCCGTAGAATTGGAGAACCAGATGGTTTAACTAT AGGGCCAAAGGACAGCATATGCACAGTTCAACAAGTAGAAGAATTTAAAG CTCTGATCAGAGTACTCCCAATTTGGTCCACAGGCATCATAATCGCGGTC ACAGTTAACCAACACTCATTTCCAGTACTCCAAGCAGACACAATGGACAG AACTTTAGTAGGAGACTTCAAGATTCCATCAGGCTCCTACGGAGTATTCA CACTTCTAACACTAACTATATGGGTTGCAGTATATGATCAACTGATAGTA CCCCTTATAACAAAGATCACGAAAAGGCCAGGTGGTCTTACCCTCCAGCA ACGTATGGGAACCGGGCTATTTCTCTCCATTGCTGCCACTGCAGTGGCAG CAATAACTGAGAATATCCGTCGACAACATGCCATCGATGAAGGACTAGTA GACACTCCTAAAGGGGTGGTGAACATGTCAGCAATGTGGCTGATTCCACA GTATGCTTTAATAGGACTAGCTGAAGGATTCAATGCAATTGGACAAATAG AATTCTACTACTCTCAGTTTCCGAAGACTATGGGAAGTATTGCAGTGGCT CTTTTCGCATTAGGAATGGCCTTTGGGAACTTGTTAGGCAGTTTGATTGT GGAAATTGTAGATAAAGTTTCCAAGCATGGTGGCAAAGAAAGTTGGGTTG GAAATAACTTGAACAAAGGCCATTATGATTATTATTATTGGGTCCTTTCA ATACTGTGTGCAGCAAATTTCTTGTACTTCTTGGTGTGCAGTTGGGCTTA TGGGCCTAATGTTGAGCAAAAGGTCTGGAATCATGATGAAGAGGAAAGCA TGGAAATGGAGGGAGATTCAAAGCTATATGAATCCTCAATGATATCTATT GCATTATCCAAGCAATCTCCTCTTCATGTATACTGA

Pep:

>DCAR_028695pep MSIASETLEAAISSSDASVKSSSLRVAERIVDSYPKNVFSWFLSCVVYSL LNRPIEGALSLLEVFYDDPSLARSEISPELFEGLFLRHFVRVLEWYNEQK SRILSSLCKDSGYDSDDHSICVESVGVSCTTLLSKMNGNQASELKELERN YEDVLDENCRVFVWYFKEVLKNEDEYVVIDPPSLVLELTDREGGIEGSDH DPVEIDTDGPGLKNGRYNPIWTDEEKHVSRNLSKFPSFFPERVSLKVLTN RGSLKRSMASFNKDCESEPVADYSYSSSDCEGKKEEMDQSSSSLDSRQSQ SQIIGLASSTDSSCSPDPEMTDTDNPPGGGKHKAPRDFVCPITSYIFDDP VTLETGQTYERKAIQEWIDRGNLTCPITRQKLNGTQLPNTNYVLKRLIAR WREQNSSPTPVKSDNQHQESEPSFSNGAPLASPDSVISQATFDGAVGELR HAIETLSMSEILKESEMAVLWIEKFWKEANMQADIQTMLSEPSIINGFVD ILFNSVDAQVLRASVFLLSELGSRDDSVIQTLCGVDPDVECVVALFRKGL LEAVVLVYLLRSSATSFIDVGILDSLLNVLGKKEDDFVKMCIRPQSASVL LLKQILGSADEISISGALSSFISDEVIENILYSLKAEWHGERCAAVSILL RCIQEDGNRRNLIAQKAELAPLIESFLEANEKERFQIVQFLSELVKLHRR IDNENILHVIKDEGTFSTMHTLLIYLQTARQDQRPVVAGLLLQLDILMKP RKASIYREEAVDTIISCLRNSDFPDAQIAAAETILVLQGRFSYSGKSLAR DLLLRRAGLHKNYKSQMLKDQDMMTSQNSGEMMEEENAAEEWEKKVAFAL VSHEFGLLFEALAEGLKSTNAKLHSACFVSATWLVDMLARLPDTGIRGAA RACLLEQFVSIFKSAKDIEDRAVSMLALSSFIHEPEGLQDLTLYMKDILK GLRELKKFSVVAFEMLKSLADGDDSSNEMWNHKELVQEDCSANGEVLSVV CFKDKIFSGHSDGTIKAWTGKGSILHLIQETREHTKAVTSLTVSESGDKL YSGSLDKTVRAWNVDSEGMQCEHVSEMKDHVNNLAIANNISCYIPNGAGI KVHSLNGTSKLLNPKKYVKCLVLVQGKLFCGCHDNSIQEIDLETGALCTI QSGSRHFITKANPIYALQVHDGLIYSASSPLDGAAVKIWSASTYDIIGSV PSTLEVRSMEVTSDLIYLGCKGGIVEVWCRKKLDKKETLQTGTNGKVLCM ALDSDEEVLVIGTSNGRIQMKFSSEIVTRKLGGLRTMPFIIANEAFEKVA STGLHANMILYLVFEYHMDVVTGTTILFLWNAIANFMPILGAFLSDSYLG RFRVIAWGTVVTLIGTIILWFTAIIPEFTPPDCDIRQPRDCVKPDSGQLA LLFISLAVMAIGAGGIRPCSLAFGADQFDKPDNPENERILQRFFNLYYAS VGISLMISVTVIVYIQNKFGWIVGFGVPVGCLLLSTVLFLIGSPLFIKIK PNKSMLQDFVQVISLSWKNKHLALPPEHLDGWYHHNKGSKFVSPTEQLRF LNKACIRRIGEPDGLTIGPKDSICTVQQVEEFKALIRVLPIWSTGIIIAV TVNQHSFPVLQADTMDRTLVGDFKIPSGSYGVFTLLTLTIWVAVYDQLIV PLITKITKRPGGLTLQQRMGTGLFLSIAATAVAAITENIRRQHAIDEGLV DTPKGVVNMSAMWLIPQYALIGLAEGFNAIGQIEFYYSQFPKTMGSIAVA LFALGMAFGNLLGSLIVEIVDKVSKHGGKESWVGNNLNKGHYDYYYWVLS ILCAANFLYFLVCSWAYGPNVEQKVWNHDEEESMEMEGDSKLYESSMISI ALSKQSPLHVY*