DCAR_003181

Resource Type: 
Gene
Name: 
DCAR_003181
Identifier: 
DCAR_003181.gene
Locus Tag: 
DCAR_003181
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_003181, is a part of gene, DCAR_003181.
The genetic_marker, MK004518 K1962, is located in gene, DCAR_003181.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_003181DCAR_003181.mRNAmRNADCARv2_Chr1:36591790..36603134
Sequence: 
ATGGATTTTGACGAGTATGAGTATCTGGAGAAGACTGTTGAAACTGTAGA
ACCTGAGAAACTGAAGGAGAAAGTGAACACTGATGAGGAAACCGTAAAAT
CTGAAGGTGGAGAAGGGAGGCAGAGTTCAAAGCACAAAAGTGAAAAGAAT
GGTGATGATAAAAGTCATCGTTCGAAGCGGGTGAAGTCTGGAGATGAGAA
GGGGGATGGTGATAGAGAGAGGAGTGTTCGTGACAAAGAAAGGGGTCATC
GGGGCAGGGAGAGGGGTGAGCGTGATAAGGAGAAGGGTGGTCGTGACAGG
GAGAGGGGTGATCATGACAGGGAGAAAGGATCATCACGCCATCGTTCGTC
TTCAAGGGATGTAGAGAAAAGTGAGAGGGGTAGAAAGAGAAGTACTCGTG
AACATAAAGATAGGGAGAAAGACAAAGGAAGGAAGGAGAAGATTGGGAAG
GGCAAAGACAGGGACCAGGACCGAGAAAGAGGAGCAGATAAAGAGAAAGA
TTGTGAACGGGAAAAGAGAGTGCTTAAAAAGGACAATGATAAAGAGAAAG
ATAAGGGAAGTGGGAGAGAGCGGTCTCAACGGAGTAAAAGCCGCCCAGAA
AGACAGAAGGATGAGCCGGATAGAGAGAAGCATCGAGACAAGGAATTAAG
AGAAAGAGAGAAAGAGGAGGAATCAAAAGAACCAGATCTCATGATTAGGT
AATACAATTATATTTTTCTGTTTGCCTTTTCAATTTGTATGCAGTTCAAA
TCTAAAACATGGAAATGCATTTTATTTGTTATTAGGAATATTATAGTGTT
TACTTGGACCCCTCTTATGTTTTTCCATATTAAATACAATTTTATATTCC
ATTATTAGGTGTTATTATATACTTGGTAAGTGCTTAACATGCTTGACAAG
TTCAAACTTTAAGCCTTCATAAATAATATTTTGATTTTCAGTTTGTTTTG
GAAAACCTTGTGTTTTTTGCTTTTAATTTCATAAAGATTATATCAAATAT
CTCCTTCCCTCTTTTGTTTAAAAATTCAAAAATAAAGTTACTTTGCTGAA
ACCCCCTCCGCTTTCTATAAACTATGCAACCTTCTGTGCCTTAGTGTCCT
AAGTTTTAAAATACAACTAGATTCTGGAAGCTCTTTTGTAGAAATGCTAG
TTCTGCCATCGAGGGGTTATGTACTGGCCTTGATAATATAGCAGATTTTG
TGTAAATTGTGTGATTATCTTATGTAATAGAAGTAAAAGAGACGTGTAAT
CATTGTTGAGATAATTTTGACCACCATACAATAGTATTTAGGCTTAATAT
TAGGAACATTATACATTATACATACGTTATATCCTGGGTTTTATATGTCG
GCCTTGCTTAATCAATTTTATTGGGCAATATTGTGCTCTAAGAGTGGCAT
CACTAAGTATCTGGTGTTCAGTTTATGTAAATGTGTTTCAGTTAAGAGTG
TAATGTTGTACACTTGATCTATTACAGTCTAAATTTATTACCTGCTTTGG
CTTAATTTTCGTTGACTTCCAAATATAGTAAATATCCTAAACTGTATATA
CTGAATTCTAGAAATAAAATTTTTCTGAAGATTATTTGAACTGGGTTATG
TACATTGTTCTATGAATATTATCTAGTCTGAACTGGTCGTCACAGTTGAG
TTTAGACCTAAAGTTCAATTGCTTGATTCTAAGGGTATGGGTTGGAATTG
TCTGTAGGAGGGTATCTTTGTACATTAAAGGACATCCAAGTTACCAGTGT
TATTTATTTGTTTATTTATATGATAGTTTCTTTTATCAGTTTTTTGGCTC
TTTGTGGTCAGATTACTTAGCAATCATTCTAGTACTGTACTTGAATTTGT
CTACTTAATGTTATTACTTGCAATAGTTCAAAAGATACAGAATATTGAAT
GTTAGATTGTGGAAAAATCGCAGATGTACTAGAGCAATCCACAGATGGTC
ATCCTGGCTTTTAGGTAGGCACAGGAACTCGGGTCATGGGCTTAGATATT
CCTACATAGACTCCATGGAATCAACTAATCAGTTTGCATTGCAAGACTGG
GTTTGCATTATTGGGGGTCATATTGGTGTGGGGATGTCCTGCTATAACTT
TTGTTATCCTCTCCCTGTCAGCCTAGTATCTTAATATTATTTATTCTGTT
GCAGAAATGCTGGTGAGGGAATTATGCCTTTGATTTACAGAAGCTTTGCT
TGTGGAAATTCAGTGTTCAGCTGACTACAAGAATATTTCTCTTTTGCAGA
ATTTTTGTTTTTAATTGCTGCAATATGTTTGAGCATCTCATGATGTACAC
CTGTATATATCACACCGATAGAGACACAATTTATTAAATGTTTTTTCATC
ATTTTTTGTGGGTTTTTATCGCAACAAATTAGCAAGATATGACAAAATGC
CGTAATTTGTTGTTTAATATGCCAATATGGCCTTATGACTTTGGAGGGAA
TTTTGTGCTATATTTCATTGTGGGAGCCCCAATGAAGTTTAGCACTTTGT
TCCACATTACTTTCTGAGTTTTACTTTTTGTTCTTGTCCAAGCTGCCGAA
CAGAACTAATATTTTGAAAAAAAATTAGCATATTACTTAGAAATCTTAAA
AGTTGAATTAGATTTTACATTTCAAGGATTTTGTGTTTCAATCTTTAAGA
TGTATTACGATATTAGTTTACCGCTACTCAAGAAAAGCATTTTCACCATT
TAACAAACATCATTTATCCTTAAAAAAATTTCTTTTTTAATATTAATGGT
GAATCTGTTTATCTCTTCCATTACTCGGACTCAAAGAGTGAACTGGTACG
GACATTTGGAAGGTCCCAGGTTAATTTATCTCACTACTTTTATTTCTGTG
ACCTTGATGATGTTGTTCACTATTAATACTGGGTTAGTCAAAGAAGGTGA
AAGCCTAGGCAAGCTTATAGAAAACAGTTCATAGTTTCATACCCATTGTC
TCCATAGATGCTACTATGGTCTCCAGGTGGCCTTCTTACTTCCATAGAGC
TGCTTCCTAATTGAGTAGCTGCGTCAAGGCTCTACCATTCCAACTTTCCA
TAGTCGCAGGACTGATAACAAGTGCCTTTTACTTTTACCATTGTATATGC
ATATCGAAGATGTGGTTGCCTTTTGAGTATATATGATTATATACCCTGTA
ATTATTGTACATGTATCTATATATGGGCCAGAAAAGTTAACAGTTTAAAG
TTCTCCCAGCTAATATATTAATGTTCAAAGATTTGTTTCTCTCGTTTCGG
TTTCATGCTTAGTTTATACTGATTCCTTTTAGTCAAGCTAGGATAAATGG
TTTTCTTGCATTTTAAACTGCAGGAGACCTAAAGAAAAAAGGGAAGAAGT
TGTTGAACCAGAGGTTGATCCTGAACGTGATCAGCGGACAGTATTTGCTT
ATCAGGTATCTACTTGATGGTTGTTAATTGTCTTCAATATTTCACTATTT
ACTGTCTACTGACTTTGATTCTCCTTGCTCACGATATTGAAGATATGTTT
AAAGGCAGATGAAAGGGATGTCTATGAGTTCTTTTCCAGAGCTGGAAAGG
TTACGTTCTCTCCTTGCAGCAATACATACTGTAGATGGTTGGTTATAAAT
AACTTGTGTGTTAATACTTAATAGCTTCCTGTTTAAATAAGCATCCTCTG
TATTGAAGTAAAAGAAAGTTATAGTGGATCTAACCAGTTTCATATGTGTA
TACAATCATTTACAAAAGTCTAAATAATTTTTTCCCGAGTCATGGAGTTG
TAAAAGGACCATGCTTCATTGATAAACCTATTATTTCTATATTTGTTCTT
TCTTTCAAAATTATTTTTAGCAAGTTTTGGAACAAGGACACAATATTCAA
ATCAAACCTTTTGCTTGGTGCAATGCCAAATTATCTACTCGCTCTTATGG
GTTTGAACAGCAATGAACAGTCTCTAAGTGAAAAATAAGGGTACGGCTGC
GTACTTTGGGGTGTTCAATAGACCATGCTAATCTGGGAGTCTTTCTGCCC
AAAATTCGAGTAATGCGACTTTGTGATGTCCATGGTTACAATTACATTCC
TAATGTACTATGTCTAATAGTGCAACTAGGAATGAACATTGATCATGTAT
TATTAGTTGACGAAGAAGTCTTGTTTCCAAAATGACTGCGAGGAAGCATT
CAATCAGATAAAGTGCGAGAGTCACAGATGCGATGGGGGTGACAATTTCG
GGTAATGGGTTGGGTTTGTTGTATAGTGTACCTGGTCCTGTTTTTGGGTC
TACCCCAACCCAACCTGAAACTGTTTAAAAATTTCAATGCCCACCTGTTA
ATGTACCTAGTCAACCGGAAAATGACCCTTTTTGACCCGAAAATTCTAAA
AATTAATTATTTTAATAAATTAAAATGATTTTTAATTATAAAAAGAACTT
AATGTGAATAAAATAATTTAAATGATATGTACATATAAGACAAATGTATA
TAGTTGTGTAATCAGTAATGCAAACTTTTATATTATAATATAATAATATC
AGGTCGAGTTTGGGTATTTCGGGTCAACGCGAACCCAACCCGAGTTCCTC
GGGTAAAATGGCTAACCTGAATCTGACCTGAAACCCAAGACCCTTGCAGT
TTTTTTTCCGTTTCGGGTCGTGGCAAGTGGCAATTTTTGCCACCTCCAGT
GAGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTTAGCTTTTCTGTTCTTTTGCTTTGCTGTATTCA
TTTTATTGGAACCAAAACATTCTTTGTAATCCACTGTAAGTACTTCCTCC
GTCCCATTTTAACAGTTTTTGATTTTTTTACACGTATTTTAAGGTGTTAA
AGAAATCACATCTAAATATAATTATTCTTTATAAAATTTGTATCAAATAA
AAGTTTAGAATCTAAACTTTTATCTGATATAAGGATTGAATTTTTTAATT
GAGTGTAGATATTTTACACCTTAATATACGTGTCAAAAAATCAAACATCA
GTTAAAATGGGACAGAGGGAGTATGTTTTTTTAATTAATATATATTTGTA
TATTATTAGGATCCTTCTGGTTAATTCCATTGTAATAGGTCACTGACATG
AAAAGGTATTCTCCCGTATGAATCAGCCCTAATTTGTTTAGGTTACAATA
GGATTATGATTAGGATGGTTTATTATATGAAAGGAAAATCAAGTGATCCT
TATCCCGACAGTGTTTTTTCCCCTTGATGTGAGGAGGTTTCGGATTATGT
TGGATATGTTGCAAGTCTTATCTGATCTCTTCAACCAAAAATGTTTCAGC
TTAGAAAGTCATTCTTACGTTTTTCAAGATGTATAAAGTTATGTAAAGTG
ATTACTGTTCACAAACTTAAATTGCCATAATCAAGTATAATACAATATAA
AAGATAACAAATCAGCGTAACGCTCAATAAAAAGTAACCAGAATAAAAAA
TTTGGTAATATTATATCAATGTAAATGATTTGAAGAGCATATATTTTTGC
TCTACTAATAATTTTGTTGTCAGTTTATTGCTTAAATAACATTTTAAATA
TGTATGCATCACATCTGATTGTTTTAGACTTTTAGTTACAAAAGAGGAAG
ATTGACATATTATGAAAATTCAGGTATTGTTTGTTTAACAACATAGATTG
AGAAAATCATTGTCAACCTAAATATTTGGTGTTCAAACTTCGCATGCATA
GAGAAGATAAACTACTTCATTGATTTCATGACAAACCATGATTGTTATCA
TATAGAAAATATCTTCTTCTAGAACACTGCACGATTATTTGGAGGTTATG
GAATGTAATCATAGTATACAACATAATTAGGAGTATAAATGAGCACGCAA
TCACATATAAATGGATAATATAGCAAAACAATATATGTGTGTGTGTGTGT
GTGTAGGGCAATAATATATAAACTTTCAAGATAAGAAATTAAAAACTTAC
TATGATTAACAACTAATATCGTAAATTCAAAATATTCAAGTTTAAGATTT
AGTACAGACCTCCATCTTTACTGCATTAACTCCCAATATATATAATTTAG
CAATTTATATCCTGTTTGTTTATATATTGGCTGTGCTGAGTTTTGATAAT
GTGTGATAGTTTCAATCAGAATATGCTAAATGTTTTTTGCTAAATACAAA
GTATGCTATTTTGCTTGCATAACACAAATTACTTGTTCTCGGTGTGAATA
TTTCAAGTCCTTGTAATTAAGACTCAAGAAACTTGTTTTGCTTCAGCTCT
ACCCTTACATATAACAATGGTCAATTATTATATCTTTGAGAAATGGGCTA
GACTGGGTGATTTCTCAGTACAACTTATTATGTTTGTTTTTTCTTAATAT
AGGTTCGAGATGTCCGCCTCATAATGGACCGCAATTCCAGACGCTCAAAA
GGAGTTGGGTAATATTAATGTTTTTGCAGTGATTTATGATGAAATAAATA
CCTGCTGCTTTAGAAGAGTACAATATGCATCCTTGTTATATATGCATCAT
CTCAATGGAATGAATGTTGTACCTACCATCTGGCAGGCAGATACTTTTTT
CAAGTAAAGCTGTCTTCATTGTGAACTCTGTTCTATGTGTCTACAATAAA
ATGCAAAATTAGCTGATATTCTTCATCCCGGATAAAAAAATATAATGCAA
AGTAATGTACTAATGATAGAATGTATCATTTCAATTGAATTGTTTTGTTA
AATCAAAAGTGAGATATATGTGTGTGTGTAACTTTACATCCTATGGTGGT
TTAGATGTCATACTTATAGTAAGTTCGCCTGTTTGTCTCTGCAGTTATAT
TGAATTTTATGATGCAATGTCCGTTCCCATGGCAATAGCTTTATCTGGTC
AGACACTTCTCAGCCAACCGGTGATGGTTAAGCCATCAGAAGCTGAAAAA
AATCTTGTACAGTCTACTACATCTGCAGCTGGTGGTCCAGGTGGGGGAAT
AGTTCCATATTCAGGCGGAGCTAGAAGGTTGTATGTTGGTAATTTGCATT
ACAACATAAGAGAAGATCAACTTCGTCAGGTATGTTTATAATTTTAAAAA
GGAGACATGTAAACAGCAGTTAGTAGGGACACGGATATTGGCACAACAAA
TGTGTTATTCATGATATAAGCATGGAAAGTGAATCTATATACCTGAAGTA
TTAGAATTGGGTCCTGGTGTTTATTTTTGCCACCAAAGCTTGAGCAAAAC
TCATGCTTGATTTACTTGAAAGCTAAAAGTGATTGTTTCTAAACTGTACG
CTCCACAGGTTATGGTGCTGTCTTCTTTTGAGCTAGTCAGATCATTATCA
TAATTGTAGAAGAACAGTTCTTGGGTTTATGCTCTCTTGAGGAACAAATT
TTGTTTAGTACTCCCTCCGTCCCCCTAGGTAGTTTACCTTGGTGGACGAG
AGTTTGACACACATTCTAATGCTCCGAGAAAACATAGTTTCGTAACTTTA
TTCTAATCTTTTTTGTTTTTGAATAAAATTTGATGTTTGAACTTTTATAC
ACAAAAAGAAAATATTAAAAGTAAGTTACGGAACTATGTTTTATAAGAGT
CTTAAAATGCGTGTCGAGGAGTGGAAAAAACTGTAAAGAAATGAGAGGGA
CGGAGGGAGTAGTTAATTTATGTGACTACTTGTGCTATCTTTCCTTGATA
GTCCAAATTAATGGTTATGGTGGTCTTATTAGCATTTGCAGTTGTATGAT
AATACTTGTATCTCTGGAAAACTTGTTTAAGACCTAGGTTTGCCTGTGCA
TCGGTGTGATATATAGAAATGAACATCATCATAAAAATACGGGCGTTAAG
AATTCTATTAGCTATTTATGCCAGCAATCAGTTGAGATTTACAAGTTTAT
GTCGTTACTGTTGTGAGTAGCTTGAAAAACATGCTTTTAGAAATGCCTCC
CAAATACTTGCACTTGCTCTATAAGTTGTGTTGATGCTGGTATTAAAACT
TAAGGGACCAGGGAGTGTTTATAGTTTTTCAACAACAAAAAGGTAAAACA
GCTTCCTTCGGTATGTTAATGCACTTCACACTTCATACTGTAATATTTTT
CATAGATGGACTGTTTTAGCACAAGAATTACTGTTCTGCACTTTTTGCAT
GTATTGTTCCATAAGGTTGTGAAGTGCAGAATAGTGTTTCTTAGTGTTCT
CCTGTTCTCCGTAGGATTGGATCCTATGTATATATCTTACATGATGTATT
TATCTACCTATCTCATGCTAAACAGGTGTTTTATCATGCCATTTGTCTGA
TTTTCCTTTAACTCATTGGACCAATATGTTTGTTATTGCCACCTTGCCTT
GTGATACATTTTCTTCCGAGATAACCGTATTGCACTTCTAACTTCCATTT
TTAATACTATGCTATTCCAGTTGGGCATAACTTGATACACATCTCATTTT
TTCTGTTCAGGTTTTTGAATCATTTGGCTCTGTAGAGCTGGTGCAGTTGC
CTCTTGACCAGGTGACTGGGAATGGCAAAGGTTATGGTTTTGTTCAGGTG
CGTATTGTGGCGGCTTTGCTTAGTGACCGCAGGGATCTGTTACTCTGTTT
GTGTTGTTTTTAAGTTGCAAGACATTAGCTGCTTTTTTAAGGATAACACT
ATATCAGGGATGTTAACAACCGGGCTTTATGTGAACTGAGTGCAATTTGA
ACTGGTACAAGTGCGTATGAATTAAGTATTACCTTTGCATCTAATTTTGT
GTTTGCTTTATTACAGTTTGCACGTCTTGAAGATGCCAGAGCTGCAGAAA
GTTTAAATGGACAACTGGAAATTGCAGGTCGAGCAATAAAGGTGATTCTA
GTTTAAATTTCTATACATGCATGCATTTACGTTTTTGCAAATAATTGGAT
CTCAAAATTCACGCGTTTTTGTTAGTGTGAGACAAGTTCCGGCTACCAGC
TAAGACAGAAATGTTACTTAGACACTGACTATTCTATACATAAGCAAATG
CCTCTGAAGACAGTTCCCTTTGCTAGCTAATGCTCTCAGTTAACTTTTGC
TAATAAAATTATAGTTATGTAATTAGTATTTCATCATTGGGTTTTTTGAT
AGAGTCCCGAGATTTGTATTTTCGAGATTGATCCCAGTAATTGAAAGATG
GAAGAAAGAAGTCTATATCAAAAAATTTCTTGCATGCAAGTTACAAAAAA
TATAACTACTTGCTAAAACTGTGTCATCTTGGATAATTTCTAATCAAGGT
AAAGCACACAACAGATTGATCTTTTGTTTTACTCAAATTTGGTATTATTT
AGTTTTAGAAATCAACGACTGGGACCAACTAAAACACATTAAATAAGAAC
GTTGGATGTGAAATCTTGCCCTGCAAAATTTTGTTTCTGGGGAAAGTTAT
GATTTAATTCTAAAATACTGGTTAAGGTTTTATTTATATACAACGTAAAA
TATTCCAAATCATCGTGGAATACTTCTAGTGAAGTGTATTCCTAGAATGT
TTGTTTGTATACATAATGGACTTCAGGGCGTTGGTGTTCACTGATAATCT
TCATTGTATGAATGTATGTTGTTTCCGTGTGTAGGTGTCCGCTATTACTG
ATCAAGCTGGCATGCAAGATGTTGGGGCTAATCCTGGCGACTTTGATGAT
GATGAGGGTGGTGGCTTGGTCGGTCTTTATCTTTTGATGTTTTTGAATGA
ACTGGACACTACTAGTGCATTTTCAAATTATTCTGTTTGTTAGCTCTGTA
TATGTTTTTGCATGCTGCAATCGGTTTAAAAAATCGCATGTGCTAAACAG
TGGATATATCTTTTAGATTTATGATGTAAGTATGTTGACACCTAATCCAT
ATCATCTGCCAAAGTGTTTCAGCGACTTCTGTTCATACAACTCTTTTTAG
GTCCCCTTGATTCTGGTGGCACTTCAATATTATGTGACCCATAGAAATAA
TCAACTTATGTAAGATTATGAGTTTCGTTACATGCTTTCTAGTCTGCTTC
TTAAGTTTAAGAAAGTTCCATACTAGGGTATTCAATTATGATTTTCTTCA
TGGTTTTATGGCCTTACCTATACATGTATTTCTAAAGGTACTGCACTATA
TCTAATTTAAAAGAAATTGTGTTAAGTGACTTAATCTTGTCCTTGATCAA
TGCTGACCTTGCTTATTTCTATTTCAGTCCCTCAATGCACGCTCTCGTGC
AATTCTTATGCAGAAATTGGATCGCAGTGGTACCACCTCAAGGTTTGGAA
TCTACATGACTATTGCTTACTTGGTTGTTTTTCATAAATTAAATTTCTTA
CAATGTTGTAGTGTTACCAGTATATTGGGAATTCCTGGTGTTAGTACCCT
TGGCTCATCCCAGCCAGAAACATCGCTACCTGGGACTGCCTCGACAGTTT
CTTCCCTTGTCAATCCTCTTGCCCAGGCTCCGGTTCCTCCCCTTGCAGGG
TTGCTGGCTGCAGGTTCTTCAGTTCCTACGGTCAATGTTCCCTCTTTTGA
TATTGTTGGTGTGCCTAGTGAATGTCTATTATTGAAGAACATGTTTGATC
CAAACTCAGAGGTTGTCACTGCAAAGTTTGTTAAGATTCCTGTATGTTTC
TAGAGCATTCCTCTAACAAATTTCTATTCCTATACTTTATGAACTCTTTG
CAGTCCGAACCGGATTTTGATCTGGATATAAAAGAAGACGTTCAGGAAGA
AAGTTCAAAATATGGCACACTCAAGCATATATACGTGGACAAGTAAACTT
CCTTACTGCTCCCTGCATGATGTGTTATATATTCGTATAAACTATAGTTA
TGTGGTGTTTCATGTGGGAACATTTAAAGACTTAGAGATAAGCTACAGCA
CTAGGCATGCCAACAACACTATATTCTATTAATAACATGTACATTAATAG
ACACTTGAGAGTTGAGGCAATACATTCGATTATAGACTCACCCCAAGCAA
AGGAATTAAGAAGATTATGTGTTCATGCAATTATTAGAAGTAAAATACAC
TGAAGTTTACCTCGACACATTATTTTTGTCAATGTTTTGATATTTTACCA
TCAAGTGAATATTCCAAGTAAAACTACTATAGCTGCTGCACACATACTTA
AAAAATTTCCTGATGCAATAATAGGAATACTGCTGGGTTTGTGTACTTGC
GATTTGATAATACTGAAGCTGCAGTAAGTGCTCAGCGTGCTCTTCATGGA
AGATGGTTTGCTGGGAAGATGATCACAGCAACATTCATGGTAATTTAAAA
TTCTTTTAGCTATAAACAATTACAGTAACATTTTTGTGATTGATTTTTTT
TTTTTAAATATCGAAACAAACATCAAATAACCTAAAACTGATAATTTTGC
AGTTGCCCCAGAACTACGAGTCCAGATTTCCTGATAGCAGATGA
Sequence Length: 
11344
Sequence Checksum: 
341b9f1abf4b91a98f23dfba5ca5d885
View location in JBrowse: 
Cds: 
>DCAR_003181cds ATGGATTTTGACGAGTATGAGTATCTGGAGAAGACTGTTGAAACTGTAGA ACCTGAGAAACTGAAGGAGAAAGTGAACACTGATGAGGAAACCGTAAAAT CTGAAGGTGGAGAAGGGAGGCAGAGTTCAAAGCACAAAAGTGAAAAGAAT GGTGATGATAAAAGTCATCGTTCGAAGCGGGTGAAGTCTGGAGATGAGAA GGGGGATGGTGATAGAGAGAGGAGTGTTCGTGACAAAGAAAGGGGTCATC GGGGCAGGGAGAGGGGTGAGCGTGATAAGGAGAAGGGTGGTCGTGACAGG GAGAGGGGTGATCATGACAGGGAGAAAGGATCATCACGCCATCGTTCGTC TTCAAGGGATGTAGAGAAAAGTGAGAGGGGTAGAAAGAGAAGTACTCGTG AACATAAAGATAGGGAGAAAGACAAAGGAAGGAAGGAGAAGATTGGGAAG GGCAAAGACAGGGACCAGGACCGAGAAAGAGGAGCAGATAAAGAGAAAGA TTGTGAACGGGAAAAGAGAGTGCTTAAAAAGGACAATGATAAAGAGAAAG ATAAGGGAAGTGGGAGAGAGCGGTCTCAACGGAGTAAAAGCCGCCCAGAA AGACAGAAGGATGAGCCGGATAGAGAGAAGCATCGAGACAAGGAATTAAG AGAAAGAGAGAAAGAGGAGGAATCAAAAGAACCAGATCTCATGATTAGGA GACCTAAAGAAAAAAGGGAAGAAGTTGTTGAACCAGAGGTTGATCCTGAA CGTGATCAGCGGACAGTATTTGCTTATCAGATATGTTTAAAGGCAGATGA AAGGGATGTCTATGAGTTCTTTTCCAGAGCTGGAAAGGTTCGAGATGTCC GCCTCATAATGGACCGCAATTCCAGACGCTCAAAAGGAGTTGGTTATATT GAATTTTATGATGCAATGTCCGTTCCCATGGCAATAGCTTTATCTGGTCA GACACTTCTCAGCCAACCGGTGATGGTTAAGCCATCAGAAGCTGAAAAAA ATCTTGTACAGTCTACTACATCTGCAGCTGGTGGTCCAGGTGGGGGAATA GTTCCATATTCAGGCGGAGCTAGAAGGTTGTATGTTGGTAATTTGCATTA CAACATAAGAGAAGATCAACTTCGTCAGGTTTTTGAATCATTTGGCTCTG TAGAGCTGGTGCAGTTGCCTCTTGACCAGGTGACTGGGAATGGCAAAGGT TATGGTTTTGTTCAGTTTGCACGTCTTGAAGATGCCAGAGCTGCAGAAAG TTTAAATGGACAACTGGAAATTGCAGGTCGAGCAATAAAGGTGTCCGCTA TTACTGATCAAGCTGGCATGCAAGATGTTGGGGCTAATCCTGGCGACTTT GATGATGATGAGGGTGGTGGCTTGTCCCTCAATGCACGCTCTCGTGCAAT TCTTATGCAGAAATTGGATCGCAGTGGTACCACCTCAAGTGTTACCAGTA TATTGGGAATTCCTGGTGTTAGTACCCTTGGCTCATCCCAGCCAGAAACA TCGCTACCTGGGACTGCCTCGACAGTTTCTTCCCTTGTCAATCCTCTTGC CCAGGCTCCGGTTCCTCCCCTTGCAGGGTTGCTGGCTGCAGGTTCTTCAG TTCCTACGGTCAATGTTCCCTCTTTTGATATTGTTGGTGTGCCTAGTGAA TGTCTATTATTGAAGAACATGTTTGATCCAAACTCAGAGGTTGTCACTGC AAAGTTTGTTAAGATTCCTTCCGAACCGGATTTTGATCTGGATATAAAAG AAGACGTTCAGGAAGAAAGTTCAAAATATGGCACACTCAAGCATATATAC GTGGACAAGAATACTGCTGGGTTTGTGTACTTGCGATTTGATAATACTGA AGCTGCAGTAAGTGCTCAGCGTGCTCTTCATGGAAGATGGTTTGCTGGGA AGATGATCACAGCAACATTCATGTTGCCCCAGAACTACGAGTCCAGATTT CCTGATAGCAGATGA
Pep: 
>DCAR_003181pep MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKN GDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDR ERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGK GKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPE RQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPE RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYI EFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGI VPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKG YGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDF DDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPET SLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSE CLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIY VDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRF PDSR*