DCAR_027767 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_027767

Identifier:

DCAR_027767.gene

Locus Tag:

DCAR_027767

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 5 relationships.
Relationships
The mRNA, DCAR_027767, is a part of gene, DCAR_027767.
The genetic_marker, MK002784 K0228, is located in gene, DCAR_027767.
The genetic_marker, MK008906 85036.18798, is located in gene, DCAR_027767.
The genetic_marker, MK018849 8_19582035, is located in gene, DCAR_027767.
The genetic_marker, MK011446 8_19582049, is located in gene, DCAR_027767.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_027767	DCAR_027767.mRNA	mRNA	DCARv2_Chr8:19574962..19585187

Sequence:

ATGGCAGTTTATTATAAGTTTAAGAGTGCTAAAGATTACGATTCTGTTTC
GTTGGACGGTCATTTCATCACGGTTGCCAATTTGAAAGATAAAATTTTCG
AAAACAAGCATTTGGGCACTGGGACTGATTTTGACCTTGTTATCAGCAAT
GCACAAACAAATGAAGGTTTGTTAGTTTAGCACTTTTCAATTTTACGACA
TTGTTTTTTATGGATGTTACACTGATTTGCTATATGTCCCCAAATTTAAA
TGCAAAAGATGTTTATAATTCTGTATGTAAGTTAGATTTATGCATTTGCT
ACATACACAAAGGCAGATCCTGTAGGAGCTGTGAGAAGGAATACCCTGCA
GAGCATGATATAAAGAAGTGCCTAACCTTTGGTTCTTGCGGTTCTCATTG
GCATTTGACACTATAAGTGACTAAATTAGATTTGTTTGTTGCTTATATCT
GTCATCAGTTATTTACTTTAAGTAGGGGATACATATTTATACACCCCTTT
TACAGGGTGTTTTAGTATTGTATACAGATGCGTGTGAGGGCAACTGTGTG
AGTACCGGAAGTAGCTTTAGAAGTTGCACTGTACGATTACTTGTCAATTT
AATGTTGATGATGGTTATGTGAGTAGTAGGAGTCATGTGCCTGTCTTAAG
TTAATACAATATCAAATTCAAGCTGTTCCATGGAAGTTGATGGTCATCAG
GGTTTGTCTATTTTAGTTGAATGGACTGCTTTTTCGCAATTTTCTATATT
TTACATTTTTATTTGTTTTGCATTTCAGAGTATGTCGATGAAGGAATGTT
GATTCCAAAAAATACATCTGTTTTGATTCGTCGCGTCCCTGGACGGCCGC
GCATGCCTATAGTTGCAGCACCACCAGTTATTGACCAACAAGAGTAACAT
CTTCAACCTTCACGTCTTTAATTACTCTTTAGTTTCTGTTGTTTAGTTTA
GTTCTCTGCTATAATTAAGTTTGGTGGCCTCTGTGTGATCGGTTTAATGA
GATCTACTTTCTTGGGTTGCTTCCTGAGACCAGTAGGTGTTGGTGGAGAT
CAGTACTCTTATATATGGGTCCAAACCATGAAAAAGATGATTAGGGTTAG
TTTAACTTTGACTATTGTTTAAACTGCAGACCGGAAGTTGAGTTTAAGGC
CGGGAATCTTCAAGGAGCCAACAGCACCTTCTTTGGAGCCAATCCATCTG
TTACAAACTATGTAAGTGTTACGTGGTTTTGCTCGTAGTCCATATTTGTT
GCTTGGTTAAGTCTAATACTTTTGTCCGGCAACTTCTTGACTGGTGGCGT
TGCAGCCTGAAGATTCAGAATGGGATGAATTCGGTAGTGATCTGTATGCA
ATACCTGAAGTATTGCATGTCCAATCAAGCAATCAAGTTCAGAAGGCTCC
CCCTCCCAGCAAATCTGACGAAGACAGCAAAATTCAAGCCTTAATAGATA
ATCCGGCTTTGGACTGGCAACAGTAAGTTCTCATTATTGTCTTAATGAGT
ATGGTTTTGCTGTTGTCTTGGTGACTATGCCCACAAAAACAGATGAACCT
TATCACATAAACTCTTTTCGGATATGTAGTCAGATTGTGGAAGGCTCTGG
AAATGCTAGAGGATATGGAAGGGGCATGGGAGGTAGAATGGGTGGACGTG
GTTTTGGTAAATTTTTCTTGACTTTGAATATTAGTAGTAATCAATGGAAT
TACCAGTGAATGTTACTTCACGGAGTTGCTGTTTTACATAGCAATATCAT
TGGTGAAGCCTGTGAACATAGCCTTAATGTTAACTATGTGCTCTAATTGA
GTCGGCATTTTTATTATATTGTTTTTGGTCACAAATTCTGTATATCCTAT
TAAGGACCGAAGTATATGTTTTACTGTTTTAGGTCGCGGAGCTGGATTGG
AGCGTAAAACACTGCCACCAGGCTATGTATGCCACAGGTGCAAGGTCCCT
GGTAAGTTTCTCGACGTTTATTGAAATAAAGAGGCAAAAAGCATTTTTTT
ATTTAGTATTTTGGAAGTTTGGAAGTTTCTCTGTTTTCTCTTGTGTACGC
ACTAATGTTAGATTGTACTGCGCGTAGGGCATTTTATTCAGCACTGTCCT
ACAAATGGAGACCCAACTTTTGACATCAGAAAAGTGAAACCTCCTACCGG
TATCCCAAAATCTATGTTAGTGCCTACGCCAGATGGTTCGTATGCTTTAC
CAAGCGGCGCTGTTGCTGTTCTTAAACCCAATGAGTGAGCCCTCTCCCCC
CTTCACGGAGAATATCAGTAGTCATGACTAATCAGTATTTTAACCGGAAG
ATTTTGTGTAAACTAATATTTTGGTTTTGTATTCCACCAGGGCTGTGTTC
GAGAAGGAGATAAAAGGAATGCCGTCAACTCGTTCGGTTGGCGATTTTCC
ACCAGAACTGTACTGCCCTTTGTGTAGAGAAGTTATGAAAGACGCAGTCT
TAACTGGCAAGTGCTGTTTCAGGAGTTTCTGTGACAAATGTATGTGCTGC
TGCAACATTTTTTCATGTGATTTTTTCAGGATATCAGTGTTGTTGGATCA
TTTCGTACTTGCTTGTTTAGGTTACATAGTTGATCATTTCACTTTAGCAC
ACATGACATTTTGTATTTGCAGTATATTGTCTTTGTTACCCTGTGTTCAT
TTTGTTCTATTAATCCAGTGTTTTTGGCACAAAGTCTCTTTACAGATTGT
CAAGATTGTTTGTCCCTCATTTAATAGTGATAAGTTATTCATTGTGTATT
GATATTCTAATTTCCAAACATTAAACTCTCAGGTATCAGAGATAACATCA
TCTCTAAGTCGATGTGTGTTTGCGGAGCTCAACATGTTCTTGCTGATGAT
CTGTTGCCCAACAACACAGTAAGAGAAACAATAAATAGAATTCTAGAGGC
CAATAACAGCGGCGGAGATAATAAAGGCAGTGCTTTCCATATACAAGGTC
TGCACAGTTTCCTGCACTTGCAATGTATTTAATATCCTCCCTCTTTTGGC
TTAGAAGTTGAGCTTTCCTTGCAGATATGAAATCTGCTCGTCCGAAGGCA
AAGATACCATCCCATGCACTGTCTGCAGCCTCAAAGGGGGAGCAAATCCT
TCCTCAAATTAAAGACACTACTGGGTCACAAGATACAACAGAACTGGTGA
AAATTGTGGCTGCTCCGCAACCTCCAGTGAAAAACTCGAATATAGCCGGG
TCCTCCAGAGTTCCAGATGTTTTTGAAGCTACAAACAAATCAAGGAGTGG
TAAGGAACCCGCAATACAGGCAAGTGGTCCATTAGCTGCTGAAGAGCTTC
AGGAGAAGCTGGTTTCTGAACCAGGTAGATTGACGTGATATATAATTATG
CACGTATGACATAGCATTCTGATTCGTACATTTTATTCAAATGGTTTGTA
TGTCTACTAGCTACTCAGTCATACAAGGCAGTGAAGTTGAACAATTGAAT
TGGCTGTCCTACCATTTCCATATTTCATTAGCCATTATAATTTTCATATA
TGCTACTTCACCTGGACAAGGATTAAAAATTTATGTAATTAAATGCTTAG
CTCAAAGTTCAGATAAATTTTAATAGAAAATTGATTTTTATTTTATTTTT
GCTTCTCAGGAAAGAAAAAGAAAAGGAAGAGAACTCGTATGCCTTCAGGT
AGTATGTGTTTTTGTCTGTTACATAGTTTCTAATGTCTGTGTTTTGAGTT
GAACAAATTAATATGATGCTGATGAAACGTTCTTCTCATTCATGTTCTAT
TGCAAACATAGACATGCAGTGGAATACCTCTCACGAGTTTGCAGCTGAAA
ATTACATGATGCCTGTGGGACCAGCTTTTAATCCTTATTGGAATGGCATG
CAACCTGGTATGGAAGGATTTGGTGGACCTTGTGCTGGTCCGATGCCTTA
CATGGGTTATGGGCCGATGCCCATGGATGTTCCTTATGGGGGACATCTTC
CCCAAGATCCGTATGGACCACCAGTAAATATGATGCCTTTTCCACCGCAG
AGGTATAGTTTGTATCTAGTATCGTGTCAGTAGTAACATTGCTTGCAGTT
TTTTTTGCCATCTGTAAGTTTGCATCTTGGCTTCATGATTTTATTTTTGG
TGACAGTGTTGGTCTCTTATTGGATTGCATCCTTTTAATCTTGCATGTTT
AGATATTGTTTATCACACCCTTGTCTTTCTTTACGACCAGGAACTTTCCC
AGATATGGGATGGAATTCAATGGCAGACCTGTCATGAGCAAAGAGGAGTT
TGAAGCTCAGAAAGTTAATCTAATGCATGAGAGAGAAATTGAGAGACTCG
GGGATAGGTAAAGCTTAAATTAACTTATCTGCTGTGATAAATTATCAGGC
TATGTTCCAAGGAGTAGTGATGTTTTTACTTTGATACTTGATCCTGATGG
TAAACCTTATCAAGCTAATTTTGAATAATGACCATATCTTGTGTATGGAT
GGTTAGCTGTGCATGTCTGTGTACTGGTCCTATGTTGTGAAACGATGGCT
AGATGTGTATTGACTAGGTCGCTAGGAACAGGCCACCAGTATTTATCACT
TGTGTATGTGTGTGTTTGTGCTGACTGCTCTTGATGAGATGAATGTTGTT
TATGGCCCTGAGCTGACCAAATCTGACCATTCTACAGCTGCGATTTGGCC
AGAGAACGAGAATCCAGAGAAGTCACCAGCAGTAGCAGCGTTCCTTCAAA
TGAACTAAAATCAGTATGTGATTCTAGTGTCCAAAATTGTTTGTTTTTTT
ATTTTCTGTGTCATTTGGCAGGTACACTTGTAAATAAAGGCCTGCCGTTT
TTATGTGGAAAAGAAGAGAAGTCGAGGAAGGAAACAATTATTGTTTTTTC
CTCCAGTGATATAAATAAGATTTACATTTTGTCACAATTGTTAGCGTTTG
TGATACACCTTTCCTCTCAAGCAAAACAATCACTCCAAAAAACACCGGTG
TCAAATATTGTTGTAGTCCTATCTTTTATGATTGCCAGTACTATACAACG
ATATAAAATGGCTAAAGTTTACTTGTTTTCTACTTGATTGGTTATTTTTA
TATTATTTATATGTATTTAGTTGTCAAACTTTTTTCTCAATGTTTATTGC
ATTATTATATGGAATTAATCTCCTGTTGCCAAAATCCCCACAAAAATGTC
TTAGTTTGAAATGCCGGGCCAATGATATAGGACATTCATTATTCAACCTT
AAACATGGGAAAGGTAGTTTCTTTGTGCCGATGTGCAGTAATTATAGTTA
AATCAGATGTGATTTTATTATATTTTAAAACTAATTAAAGACGATGATTT
TTTCAAATGTGGGTTTGATATCGTTATAGGCTTTGAGGGAGAGAAAACTT
AATGGCAAAGAACTAAGAAAAATGTAATAGTTTTATTAATATATATTAAT
AAAATAGTGAAATAATTAGTAAATGTCACATTTGTATTTATTAGTAATAA
ATAATATTGTGAAATAGTTAGTAAATGGCACATTTATATTTATTAGGGTT
TAACAATGATTTGTTGAGAAATTAAATATGTTAAAAAAATAACGAAAATG
AGTCCACTAATTCAAAAATAAAATAGAAGTGAAAATGAGTCCTCTAGTCA
AAGATAAAATAAAAGTTGAAGTCTTAATTTTGTGGGAGACGTCCACGCAT
TGCGTGAATTTATTGGTACACATGCACAAAGTGCTCTATAAATGAATGCA
GTCAATAATAAAATATAGTTACGTTGCTGGAAGTATGCAAAAATTTTTAA
TTTTTTTGTGAGTTAGAAGTATTTAATATTATTCCTGCTGCTAGTGGTCG
TTTTATGTTTTAATCTCGTTTATTTTGTTACAATTTCTATATGTCGTACA
TTTTTTTAATTATATTTTTCATATATTTTATAATTATTTTACAATTTACA
AATGATCGCTCTTATTTCTGCAGAAGTCTCCGCGGCCACTCCCTCTTGAT
GCTGGCCAGCTACCCGAATATCACCATAGACGATCCAAAAGACCAAGATC
TCCACAGAGGTATTCTGATGACCGACCAGAAAGATCAAGATCTCCGCGGA
GGTATTCTCGTGACCAACTGGAAAGATCAAAATCTCCGCCTAAATACTCT
CACAGTCCCAAGCTACCACTAAAACACACTCAAGAAGCAGCAGAGCTGAC
AAGAAGACAATCCCAAGATCCAGGGCCACGAAGGCCACCTTCCAAATCAG
ATTCTCACCGCGACCATGGAAAAAAACAACATTACCATGACGTCTACTAC
CACCATCAAGAAGATAGTGACGTCCACAAATCGAGGTCACTGTCATCCAA
ACCCCCGGTCCACCACCAAGCTAGCTTTGAACCACCACCAAAGTTTAGCA
GCACAGGTGTCAAAGACAAGAAGAGTGTCTCCGCTGACATCACTTGCCCT
GAGCATGAGGCAGCAGACAAGAAGCAAAAAACCGTGACCTCTTCTTCTGC
ACATGATGAAGATCATCATAGAAGCCGGACAACAAATGCGGCACCAAAGA
ATATCAGTAGCAGCACCGGTAGCGATCATGTACAAGAGCGCTATCAGTAC
GATGAATCAAGTGAAGATGAAGAAGATGATCGCCACTTCAAGAGGCGGCC
ATCAAGGTATGTCGCGGTAGAGAAGGAGAAGCATTCCAGCAAAGGATCCA
AAGGAAGGGAAAAGGGGAGTCATGGTAGCCATAGTCACAAGTAGAGAGCA
ATGAGGAAGGTGGCGCGTGCCAAACGGAGGAGTGTAGTGGAGCTTGTTGT
TCATTATGAGAGAATATCATATGTACAGGTACTAAGAGATTGTAATACTT
GCGAATATTTTTTTCGTTTCTTTTTTTAATTGTGGGATTGGATCCTTTTT
GGTATTTAATTTCAGAATATCATATGTACAGGTACTAAGAAATTGTAATA
CTTGCGAATATTTTTTTCGTTTCTTTTTCTAATTGTGGGATTGAATCCTT
TTCGGTATTTAATTTCAGAATATATTATTCAAATTATTTTGTTTTTGATG
ATGAGTAATGTTAGGAAATCAAATTGGTTATTCAGAATTGGTATCTAAAA
TTCTTGTCAAATGTTCCGAAATCCTCGGGGTGTATTCGATTGAGATTTTA
CAATATTCTTTTTCATTCTTGAAATCTGAGAGTATAAATTTGCGATTGTT
TAAAATTCATTAAAATCTTCGGATATTGAATTTGGATTTTAAATTATCCT
ACAAAATCTGTTGGTATTCAATCATGATTTTAAGTTATGCTTTAAAATCC
GATTCTGTTCAATTGAGATTGTTTCAAATCTGATGGTATTCAAATGTTGA
CAAATTTTTTTGGATTTCATAAAATGATCGAATTTTGTGATATTGATCGA
TATATTTTAAGTCCCTGAAATGCCACCAAAATCCGAGATTTTGAACCATT
GTGTTTAAGTCCTAAAAAAATCATATTAAATACGAGGTAGTCACTATTTT
TAGAGTAATCAAACAGATCCCAAATTGAGTCATCAAATTTTCTTATAAAA
ATTATCAGATAAGATGTTTTAACTAGTAAAATTATTGTATGTGCATATAG
TCTATTATATGTAACATAATTTCGAAATTATATTTTGTTAAATCATTACA
CATGATATTTAGGATTCATTTTGAAAATGAATCGGATATTTTAGAGTTTT
ACGTGTATTTAATAAAATTATAATCAATTAAATCATGACACGTGAATTTT
TTTTAGATGAATGTCGTTACCATGATAATTTTGTTTGACAACTTTAAGTA
ATGATGAACAATAAGAATGTCTGAATAAATAATTTATCAACACTTCTTTC
TTGTTCACAAAAGGAACAAGAGAACAAACTCGATAGCAACCTCTCAAAGC
ATCATAAAAGAGAACAGAACATAACCACAACTTTTTAACCAACAACAAAG
ACAAGACACAAAAGAAAATGCAATAATTAAGCATAATCTTCAGCAATGGG
AGCATACGATCCAATGAAGACATCTCCGTAGACAAGCCCAGCTAAGCCTC
CACCAATGAGTGGGCCAACCCAGTAGATCCAGTGTCCAGAGAAATCAAAA
CTGGCCACAGCAGGGCCGAATGATCGGGCCGGGTTCATTGAGCCACCGCT
GAATGGGCCAGCAGCCAAAATGTTGGCACCAACGATGAAACCAATGGCAA
TGGGTGCAATGGTGCCTAGTGAGCCCTTTTTGGGATCCGCGGCTGTGGCG
TAAACGGTGTAGACAAGGGCAAAGGTGATAACGATCTCGAACACTACGCC
TTCGGCTGCACCCAAGCCGGCTCCGACTCCGTGGGTTGGGATGGCCTGTC
ACGAAAACCGAACCGAAATTAATACCGTCAGACATAGGGCTTGTTTGGTT
CAGAGAAGCAGAAGTTGTTTCTGGCTTCTGTTTTTCTTGATCCGTTTGTG
TGAAGAAATAGAAGCATTTTAAGAAGTTGAGAATGCTAACTTCTCTCTCA
CAACATTGCTTCTTTTCCAAACACTTTATTAATTTTTCACATCTCATTTT
CACTCAATTTCTTTACTATAAACAAGAAGTCACTTCTTTTAAGCTAACTT
AAACGACTCCATAGACTCTGCTTTCAGTTGAGACATGTTTTTTTTAATTT
GTGTTACAACTCAGGGACGAAGCTACATAGGGGCCAGAAGGGGCCATGGC
CCCCCCTAGTTTCCATAGTATTGTAATTTTTATTATATAATTTTGAAAAA
AAATATATTTTATCTATATATTTATATAAATATAAAAATTTGGCCCCCCT
CAAAAAATATCTGTTCAGTTCTAAAAAATATTTAACATTGTAAAATAAAG
TTTTAACTTAGATTTTTCTAATTTATTGTATTAGACCAAATTTAAAAATA
AAAATAAACAAAAATATGGATATATATACAATTATACTAATTTAAAAGGA
AAGATCGTAAAATGTGATATGTGATAAATATAAATGTCAATATGGTTCTT
CTTTAAAAATAAGAATCTTTGGTGGAGGTCTTATCCAAAAAACTTATACC
TCACTTCACTTCTTCATTTTCATAGAATAGTTAGTCCTCGTGCATTATAA
ATTTATTATTTAATATTAATATTGATCTACTCATCTTCAATTTAAATTCA
TCATCCAGGTAATATTTTTACTTATTTAAATTATAACTTGTCGTCTTCTA
AATAAGTATAATATTTTTTTTTAAGTATAATAAACATTTTTTTTGAAAAG
GAGTAAGTATAATAAACATAATATTTAGTTTTTGAGATATTGTCAAAATA
CAATTTCATATAATGTGTGTTACTTGCTAATTAAAGATTACTATAACTTA
GAGGTATTATGATGAGTTTCCTGACCATTTATACTTAAATATATTTAAAG
AGAAATAGCTAAATATTTTTGTTGACACTATTATAAATTTGATTTCCTGA
TTTAAAAGAACGCAAAACTCTACTATAATTTTTTTACTAGTATTTTTGTA
TTTATTTTATAATGAATATTTTACAGTGCTGATGAAAAATTTTACTGTAT
CGAAGAAAAAAAATTTTGGCCCCCCTTACACACGTTTGCTGGCTTCGTCC
CTGTTACAACTAATCTACTGTATTAAAGGAGTATAACACAATTTAATAAA
TAAATTATGGTGTAGTCATGCAATAATAGTACTTGATGTTATTTATTTAC
TATTTGCATGATTGTTGTGGTACTCACAAAGTCAAACAAGCTAACATGTC
GTAGTAATATTATTGTAGACACAAACCAAGGACAACGCAATGAATAAAGT
GTAGAGGACAAACAACTAAAAGTAAGAATGAGACCCCGCAAATAGAGTTG
GTGAAGATGATGAGATTCCTTTGTTGGGTAATTCATAATCATTTAACTGA
GGTGAGGTGTCTAATGGCGGATCCAGGAGGGGTCTTGGATTTAAGCACTC
CCGATTTCTATAATTTTTTCTTTTATATGATAATTTTAAAATATCTTATA
TTTAAGTCCCTGTATAAAATTTTAGTCTGTCTTACCAAAAAAATATTTTA
CCTATATTAATATGTCATTACACGGACTAGGTCTTAAATTAGGTTAACGA
AAATTGGAAGACAAGGTCTAAGAGTTACCTTGCCAGCAGTAACAAATTTA
AGGAGGAAGCAAGCAACAGTGGAGCCAAGACACTGAGCAATCCAGTAGAA
GAGTCCAGTAATGATGGTGATGTTGCCTCCGATGGCCAATCCGAGGGTGA
CAGCTGGGTTCAAATGGCCACCTGA

Sequence Length:

10225

Sequence Checksum:

264158b5089c64701186d1afdadc613d

View location in JBrowse:

DCARv2_Chr8:19574963..19585187-

Cds:

>DCAR_027767cds ATGGCAGTTTATTATAAGTTTAAGAGTGCTAAAGATTACGATTCTGTTTC GTTGGACGGTCATTTCATCACGGTTGCCAATTTGAAAGATAAAATTTTCG AAAACAAGCATTTGGGCACTGGGACTGATTTTGACCTTGTTATCAGCAAT GCACAAACAAATGAAGTTTGGTGGCCTCTGTGTGATCGGTTTAATGAGAT CTACTTTCTTGGGTTGCTTCCTGAGACCAGTAGACCGGAAGTTGAGTTTA AGGCCGGGAATCTTCAAGGAGCCAACAGCACCTTCTTTGGAGCCAATCCA TCTGTTACAAACTATCCTGAAGATTCAGAATGGGATGAATTCGGTAGTGA TCTGTATGCAATACCTGAAGTATTGCATGTCCAATCAAGCAATCAAGTTC AGAAGGCTCCCCCTCCCAGCAAATCTGACGAAGACAGCAAAATTCAAGCC TTAATAGATAATCCGGCTTTGGACTGGCAACATCAGATTGTGGAAGGCTC TGGAAATGCTAGAGGATATGGAAGGGGCATGGGAGGTAGAATGGGTGGAC GTGGTTTTGATATGAAATCTGCTCGTCCGAAGGCAAAGATACCATCCCAT GCACTGTCTGCAGCCTCAAAGGGGGAGCAAATCCTTCCTCAAATTAAAGA CACTACTGGGTCACAAGATACAACAGAACTGGTGAAAATTGTGGCTGCTC CGCAACCTCCAGTGAAAAACTCGAATATAGCCGGGTCCTCCAGAGTTCCA GATGTTTTTGAAGCTACAAACAAATCAAGGAGTGGTAAGGAACCCGCAAT ACAGGCAAGTGGTCCATTAGCTGCTGAAGAGCTTCAGGAGAAGCTGGTTT CTGAACCAGGTAGATTGACGAAAGAAAAAGAAAAGGAAGAGAACTCGTAT GCCTTCAGGAACTTTCCCAGATATGGGATGGAATTCAATGGCAGACCTGT CATGAGCAAAGAGGAGTTTGAAGCTCAGAAAGTTAATCTAATGCATGAGA GAGAAATTGAGAGACTCGGGGATAGCAGTAACAAATTTAAGGAGGAAGCA AGCAACAGTGGAGCCAAGACACTGAGCAATCCAGTAGAAGAGTCCAGTAA TGATGGTGATGTTGCCTCCGATGGCCAATCCGAGGGTGACAGCTGGGTTC AAATGGCCACCTGA

Pep:

>DCAR_027767pep MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISN AQTNEVWWPLCDRFNEIYFLGLLPETSRPEVEFKAGNLQGANSTFFGANP SVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQA LIDNPALDWQHQIVEGSGNARGYGRGMGGRMGGRGFDMKSARPKAKIPSH ALSAASKGEQILPQIKDTTGSQDTTELVKIVAAPQPPVKNSNIAGSSRVP DVFEATNKSRSGKEPAIQASGPLAAEELQEKLVSEPGRLTKEKEKEENSY AFRNFPRYGMEFNGRPVMSKEEFEAQKVNLMHEREIERLGDSSNKFKEEA SNSGAKTLSNPVEESSNDGDVASDGQSEGDSWVQMAT*