DCAR_027702 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_027702

Identifier:

DCAR_027702.gene

Locus Tag:

DCAR_027702

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_027702, is a part of gene, DCAR_027702.
The genetic_marker, MK009821 8_20401997, is located in gene, DCAR_027702.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_027702	DCAR_027702.mRNA	mRNA	DCARv2_Chr8:20392565..20402094

Sequence:

ATGTCGTCGTCGCGGGCGATCGACGAGGCAGCGGGGAAGATGGAGTATAT
GAGTGACGTGGCGGGGGTGTTGAGTGATGGTGGCGTGGAGGTGGTGAGTC
AGCAAGGTGTTGCGGCTGTTAGTGAGGTTGCGGTGGCTGCTGCTGATTCG
TATTTTCCGGTTGCCGCTTTGCAGTATTTGATTGACTATGTTCATACTTA
TACTGGACTGCCGTGGTGAGTGTTTCTGTTTTGCTTTCCATATTTTTTCA
AGTTTGTTAATGTGCTGGTCTCGTGTTGGTTTGGAAGTTATTGCATTTTG
GTTGAAATGAATGTGTACGGAGCGTAATTTAAATAAAGCAAACATCTGGT
GTCGTGTTCGGGTTATCAATTTGTACTGCCTAGTAATATGCAAAAAGAGT
CGATTTTATTTAAAGAAACAAAGAATTTGTGCCTTTTATTATGAATATAC
AATTTCATTTTATTATTGAAGTAATTTGAAATTTAACAAGTTTGTTCCTA
GTAAATAACAATTAGACCTTTTAGTATGCACTGGTGGTAGTAGTAAATTA
TACTCCTATAAGCCATGTGCTATTAATTTTGCCTTCTTAAGAGTTTGTGA
TTAGGGAACTCGATTTTATATAAATGTGGAACATAATATCTGAACATGAG
GTGTTTTTTTGGCGTATATGTTTTAGAATAGTGCAAATGAAATGGAAGTT
TAGATAAAGACTTATGATTTGTAGTGACTTAATGTGATAAGTGCTCAATT
TAATTGTCTGTTCGAGTATTTTTATATTTTAGATGACTTGTGAGTTATTA
AAATTTTATAATAAAAATAAGCTTGATACTTTGATAGGTTATTTATTTTA
GTGTTGAAATTGACTATTATTAAAAATTATAAAATAATATAAGCTGTTCA
AAATAAAAGTACATCCTACCAAGTTCTGGCTTTAAGTCAGTTTGTGGCTT
ACTTTAAACTATAAGCCAACTTCCGGCTTACTACCCAAACAAGCATTTTT
CAGCTTAAAGTCAAAAATGACTTTAAGCCTTTTAGCCCAGGCAAACAGCC
TCTTTGTCGATATTTTTAAACAGTTTAGAGTTATATCCGTGGTTGTGTAA
GGTGAAGTATAGTTAATTCCCATTCAGTGGTTTTTTCCATACATGTTACT
TTGAGACTCATAGCATGTGCTAAACATTCTCTCTTTTTAACTTGATGTAA
ATTTTACTTTATCTTACTGTAAGTTCGTAACAATGTAATAATATTCAGGT
GGGGAAGCATAGCTGCAACAACTATTTTGATTCGATGGCTGGCAGTTCCA
CTAATGATTAATCAGCTCAAAACTACTTCAAAGCTAACGGTAATTTTCGT
TTCTTCGTCCTTCATGCTTCACGGGTAATATTTATAGTGAATACTGAATA
CTCTGTATTGTACTAGTTGAAACTTGATATAATTACCATTGTGGCGGAAG
CAAGATTTAGTAAAAGGGCGGGCGTCGCTTAAATATAAGAAATCGTCTTA
TAATCCAACAAAAGGAACTTAATACATAAAATCAATACAACAAATTTCTA
AGACTTAGGCAATTGAATCCTACGAGAAGACATGTTTTGAAAACGATGTA
AGATGTCATCATTTTCAATTTTTACAAATACTTCCTTCTCAATATATACT
ACCGAATATGTTTTTAAATGGGGGCAAATAGAAAACTTATGAAATTTTAA
AGATTAAAAAATGAAAAACTAGTGGTCAAGGGTGGGCATTTGACCCCCCA
GCGACTGCTCTCCCTCCGCCATTGATTACCATGACACGCAAGGAATTATT
AGATCTCATAAACTTAACTTATTAAGTGTTACAATGATGTTTCTCACATT
ATGCTTTGAAATTAAAATGCAAAATCCAATCATCAAATGCTCGAAAAAAG
CAAACCTCCCTTCTTTTCTTCATAGGACAAAACTGTTTACCTCCAATGTA
GATGAAAAGTAAAGTTTGCACTGTTGACTTGATTGTTGCTTGGAATTTCT
CTACGGCTCCACCTCAAATAGATAGAACTTCCGTCCCTGAATTGTCGATA
CAATGTAAAAAAGCAAAAGAATACAAAGTGAGAATAGAATATAACTCCAG
TCAGACACAAAATTATTACTCCATTATATTTTTTGTTTAATGAATTTACA
GTTCCACTACTACTAGTGTGGTACTGAAGCCAATATTTGGAGTTAAGACT
ACCAATATTTGCTTTAAAAAGATGTACCTTTGAACTTAGGTTAGTGTTCA
TATCTATTCAGTGATGAACCATACTTGAGAGTCGATCTTATAAGATGGTT
TGACAGATCAACATAAAAGGCGAGCAAGCTTTAAGCTAATGTTCAGAATG
CATATCATAGTGTGCAAATGACACTTCAAATTTTGGAGTTCACAAATAAA
CAACTGGCACATATTAATCATTAGTTTAGGATTTCATTGCATTGGTTACT
GATCGACAAACTCTTCTCTCAATATCCAACCTCAAACTACATTGTGACCG
TCCAGTGCAGAATATGACGTTTTGTCCGTGAGTAAGTTGGTTTGATTCAT
ATATTCTCTCCTTTTGTAGTAATTTACCCATCATTAAGTGATAGATATTT
ATTGGAGATATTGGCTCAACTCTCCCTTAAAACAGGACACTATAAACATA
GCCTCTTTTCTTTTTAATTGTAATTCATGATTTCAAGTCCTAAAAGCTGT
GTCTTTTTCTTGACGAAAATGACAGAGACTTTCTACTCTTAATTTGTTTC
GATCTATTTCTAAGATATCCAGTAAGCTTGGAATTTAAGCTATCTTATAG
TGAACTTTTTTTTTTTAGCAGATCTTGGCATTTTGCACTTTTTTAATATT
AATGGCACTTCCATATTGTGATAAATACGTGTATAATTTGTACAGTATGT
CATTTCTGATAATTCAAGGCACTAATGTTTCAACTTTCAAGTTAATTTGT
CTCTTTTTTTATATGACATTTTTCTAAGTTGTTTTTTGTGCTTCATCTCC
ATTTTCTTCTTATGCTCTATGTATTTGGTTTAATTTTAATATTGCTGATT
GGAAATATTAGCAGATATTTAAAGATTATCTTATTTTTTGCAGCTTATGA
GGCCGAAATTGGAGGAAATAAAGCAAGAGATGCAAGACAGGGTATGGACA
TTTAAGTTGGTAGTTGTATTATAAAAGATATATTGATGCAACGAAGAGCT
CGGAAAATTGATAATTAATTTAATAATATATTATTATTTCAATGCAGATG
TCTTTGTCACATATATCCAGGCTATCTATTAGAATATCTGTGATTAAGCA
ATATCTGGTAGTTGTTATTCACTAATCACTAGGAATCTAGAGGATAAGTT
GGTTATTTGGATTGTTCTCCTGTTATCCATGTTAGGTTTGATCTATATAT
ATAGGTGCAACCTTCCTCATTGTAATTATTCAAATAAAGAGTTGACATCA
TATTGGTGTAAGACAATTAGATATTGACCTTATCCTATTCCAGTCCTAAA
AATCTACAATTCGTCAATACCACACTCGACCGCCGCAAATACTTGCCTTA
CCACATTTTTATCTCAGGACTTCCACCACACACTTGGCGGTCCTAACCAA
ACAGAAAACTGCATCCCCTTCAGATTTACAACCATGAAAGAGCACACTAC
AAATCTCAGATGATCAATTAGAAACCATAGGAAGGAAATACAGTGATCTA
AGAACTAAGTGCTGGTGAGTATTGGTGTCATGCAACAACCGCCAGATTCC
ACATGTTACTCATCACTTATGATTAGAAGTGACAAAATTCGAAAAGACCC
TAAACCCACACAGCTGACATGAAGAAACAGGAATTTGGGTCGGGAGTTTT
TGGTATTGGGATGGGCTTGGTTTAATAGAAAATAAATCAAAAAATTTGGG
TCAATATCTGGCTATTATGTATATTGGGTTTGAAATAAAAAAAAGATTAC
AGTTAGGCTTGGGTTAGTAGGGTTTCGTAGAGATTGGATACTTTGGCATA
TCTTTTATAAAGACGTGACTAAGTCCTCACACAGACGATTTGTTTTTTCA
ATCTTCAAGACACTATTAATAATGTTTTGTTGAGCTAAATTGATGGTAGC
AATGAATGGTTGGTACGAAGGCCTTAAAGTGGATATTGGATAATGAGTTT
GTATTCTGTCAAAAAGATAATATGCGGGTCAGGTGCTGGAGAACCTCACT
ACTATTGGTCACAATGAAATTCAAGATAGTAGCAAATGCGGATAATCTGT
TGGGTGTCTACTTGATGAGGACAAGGATGAGTAGAAGGAACATTTAGAAG
AGGAGATCAAAGTTGTGGAGTACCTCCATATAAATACAAATTATGGTGCA
TATTTTCAGATTTTTTCATGGACAAGATGATGTTTAATAAAATGACACAA
ATTTTCACTAGTACTTTTGTTTCTACTATTGGCTTAAAACTATTTGATCT
TATATGTTTTAGATAATGTATATATCTATTTGCTATGTCTGTATATATTA
AATTTGTGTGCGAAGAGTGCCTAAAAGTATCACTTAAGCCTTGGGAGCTC
CTTTGCCTGTGTGCGCTTTCCACTTTTGATAACTATGCATGACTGATGAC
ACGTCAGAATGTTGACGTTCCATACATAAAACAAAGGATATTACCAAAGA
CAATGAGGAACAACTGAACACAGGCTTGTTGGTAATTAATGTGAAGCCAA
CTATATTTCTGATGTTGTACATGAACATCACGATGATATACAAGTTGCAC
AAGATAACATGGTTTTCAAACCTGAAGTGGAAATTGTTGCACATCATGTC
GAGTTCATTATTCCTAAATTTTTCAATGCAATCAAGGATCCAAGCAAATG
TATATCTGCAGCTTACTACGAAATACAAATTTCCACCATATTTATTGTTT
TTGCGGCTTACTGAACTCTCATATCTTTACATATGTATGTATGTACATAT
GTATGCATGCATGTATGTATGTATGTATATGTACTCAAATTCATTTATTT
TGTGCAGGGTATGAGTCCTACTGCAGTAACAGAAGGCCAACAACGAATGT
CTCAACTTTTTAAAGAGTATGTAACTTCTTACTTTGTGACATTGTCATAC
AGAATTATCTTTCATATGTTTATATATTTAATAGAAGACTTGGTGGTTAT
TAATTAGCTTTCTTACTTTTGTGGTCATATTTAAAGAATTACAAATTACT
GATGACTTCAGTTTGTATAAGGATACCCACATGTTTCAATTTATTCTTTC
TGTATATCAGTTTAGAGCCTGATTAAATTGTAAAAATATATAAACTGCAC
ATTTGTGTTCTTAAAAAGCCCAAGCAGTTAAATCAATACTTAAGAAATTT
GTCGTTTGGTATTGTGCAAAAAGAAATTTGTTATCTGAAATGAGATAATT
ATCTGTAATAATACATATCAATTTGTTTATACATTTCCCTTTTCCTTACA
GTACATTTGTAATTCTTTTATCAGTAATAATCGGTAAGAATCTTTAAACT
GGAAATAGCAATAATTTCAATCAGAAATTGTCCTTGTAATACAAATAAAT
TTTCTGTATCTATGTATTATTACCTATGTGCTTGTGTGTCATTCAAATAA
AATTAATCTACGATTCCTGGTAATGTTGGTTTAAGGCTTATATGCACAAG
TCCATGCTTCGATAATAATATGTTATTGAGAGCTCATGTTTGTCATTTGT
GATGCTTTGCAAATCCTTTCCTTCAACTCCAGTTTTCCTCTGCATTTGCT
CGTGCCCTATTACTTTGGAGCTAGTTTTAAATCCGCCTCTTCCCCCCCTC
TTTTAGTAGTTTAAATGTTTCTTTGTCTTAACATACTTACAACTTCGGAG
AAGATTGAATTTTGTGTACCTGAAATATACCTCGTCTATTACCTGCTAGA
TCAACTTTCAAATTTTGTGCACCGTCTTTTTTCATTTAACTGTGGAAGGG
CTTTTGTCAAAATAGTATACTTGATGATAACACCCCCACCTCCTGGTTCT
TAATTTATCTACTAACACCAGGAAATTTGGTAGGAAGCAACATGTTTAGA
GAGCATTTTGTTTGTCCATTTAACATATTACTCTAGAAGAGGATTGGATA
TAATACTACAAAGTACAAATGTATTGGAATCCAAAATAAATTTTAAAAAT
CATAAGTTTATTCAAAAACCAATTGGAGTGAAAAAGTATTAAATAAAACC
ATTGTTGATTAATTGATATTGGTTGTGAACCTCTTTGTAACACAGTTACA
TAGAGTACCAAATTCTGCAAAATTTGTTCATGAACTATGAAGAAATGCTG
ATTTTGAGGATTGAATTTATATTGTCTGATTGGGAGAAGTAATTCGCACA
AACTTTGAATTAGGATTGTTTAAATGATCAATAAATAATTCTATATATTT
CTTTTTGCAAGTGTACTCCTGGTTAAAGTATATAGTGTCTTAACTGTCCA
TAATTTTCAATGAATTTTATTGCATCTACAGAAACATCACATTTTGATTG
TTATGTTTTAAATATTGTGCTATTTGTGTTTATCATATTTGCTTGCACTT
GTATCTTTGGATCTGTAAAATAACAAATTACGTGTTTAGTTACACCTGCA
ACTGAGACAGTTACCTTTACATCCTTCACCTTGATTGTTTTGGTAGTGAA
AGCTGAATACATGTGTTGATTATTAACCCAGTAATGTTGGCAATGCAGAT
ATGGTGTTACACCTTGGACTCCTTTAAAAGGACTCCTGATACAGGGTCCA
GTTTTTGTCAGTTTTTTCTTTGCAGTAAGATATTATTCTTTCCACAATAA
AGATATTAGATTTAATAATTTTTTTATTTTTGTTTTAGTTGATTACTCGT
TATCTCCTTTTCCATATCACATCATAAATTTTTTCATATGCAGATTCAAA
ACATGGTTGAGAAGGTGCCATCTTTTAAAGAAGGTGGAGCATTCTGGTTT
GTCGATCTGACAACTCCTGATAGTTTCTACATCTTTCCAGTTTTGACAGC
ATTGACATTCTGGATAACGGTTGAGGTAACAGTTTCATGACAATTCTTTT
CCACGCGTATAAATATAATAGTAAATCTCTAAATCTAGGTAGTGATGCGA
GTGATTGGATACATTTCCAGAATATTATTCTCTCAAATAAGAACAAACTT
TAAAATTCTGGTTATTTTTTTGGGTCCAAAATTCAGAAAGCTAGGGGGTT
GTGGAGTGACTACTTGGTGTTCCTACTTATAAGAATTTAGAAAGTCGCGG
TGATCAGTGTTATTAAACATGATATGCCCCCTGAAGCGCAAAGGCATCCT
GGAGCATAAGTGAATAATAAATCAGACTGATTTAAACAAGAAGAAAGATA
TGTCCATTATACACACACACATTTATACAAACAAAGCAGTAAAGACATCA
AGAATCATATATGTCCGTGTGTAGTAATATACAAGAATCAGTATACAGGA
GAAGATAGAAAAATATAGAAAAACCTGTTGCTTTTAAAAACGACCCAGAT
AACACCCCGGTCATCTGATAAAAAAGCGCCTTTCTTCTGTGTTTTCTGCA
TAGCGGATAAACCACTTCAGTAAAGTCACATTGCATCTCTATAGCAAAGC
GCTTCCGGGGCGCATCACATCACTTCTCGCATATGTGGGCGCAGCGGGGA
GAGAATTAAGCATTGAAAGTAATTGTATCCAAACTGGCTGTATATCCTGA
TAAGTATCCAAACCAGGTCTTGTCTTTCGTTGTAGCACACTCTTAGAATT
CTATGTATAATTTTTTGACAGTTGTTTAATGACATGTAAGATTGGTTATT
CAGCCTTTTTTTTTTTTTGCACGAATGCTTTTAATTATTTTTTTTTTTAT
ACCTGCATATTATTTTACTTGCCACAATGGATTCAGTATGTGATGTTGTC
ATCTCTTTCAGTAACTTCTGTTAGAATGACTAATATATCATTTATCTACT
AACTGTATATTATTGCCGAGGCTCCAATTTGTTGTGGTAGTTCATAACTG
CATGCTATATTGTTCAAATGTGTTGCTACTCGATTTGGATGTTGCTGAAG
ATTCCTATGTCACTTTATTGTTTATTTCGGCCAACTCCTCAACTAATTGC
CTTTCCACAGTGCAATATGCAAGAAGGTATGGAAGGTAATCCTGCTGGTG
CAACAATGAAAAAAGTCATGAGGGTTTTTGCTCTTATCACAGTTCCTATT
ACCATGTCTTTCCCAAAGGTACTCAAGTAAATTATCTTCTCTTGATATGT
ATATAATGTATTTTAATTCTGATATCATTGCAAATTGTACTTGTCAAGTA
GCACAGAGCATTGGTAAAGCCCCTCAGAGGAGGGATATATCTGCCTTATT
TTCATACACCATGTGTGGAGCCTTTAGTGGGAAAACTCAGTTACAAATAT
CACTATAGTTTATATGGACAAAACATCGAACCAAGTTACTAAAACATTAT
ACTAATGTATATAGAAAAATATGGGTCATAGTCTTGTAATTTGCAAAGAA
AGTAGCTGTATGCTCATGCATTCGTTGTTAGATAATAATCTTACTTCTTT
TTTTCATCCAATAAGTAGCTTCCACAGCAATTAATCTCATTATATTGGAA
GGGCTTTTTATCATGTGGCATTTATATAATTATAAGTTTTGGAAGGAAGA
GATGTGGTAGTAGTGTGTAGCATCTTTCCTTGCATCTCTCTGTGTTGCCA
AATTTAAGTGGTCTATAAATATCAAGTTATATTAAGTTCAATGAACCCAT
ATATCGAAGTATCAGCACCAGTAATCTAATGTGGAAGTTTTTATGCAGGC
TATATTTTGTTATTGGATCACGTCTAACCTGTTTTCACTGTTGTATGGAT
CAGGTGAGCCCTTTTAGTTTTTTGCTCATCAAAAAATGCACTACTTTTAT
TTATTATACCTTCAAAAGAACCTCGAAAAACGTTTAAGTGTTATGCGAAA
ATTAAGCTTTCAAAGAGTAGCGATTTTTTTCAAACCCAACTCGTGCGAAT
GCTGGTATTTATATTCAATACCAAGCTAAACAAAATTCTTCAATGGTTTT
ACTTGTTTCAGGTTTACAGCTACTATTCCTATGATTATGTATCTTATTAA
GCATATGAACCAATAATTCTGCTTAAGAAAATATGTTTACTCAATTTGAA
ACAACTAAGTACCATTTTAATATTCATTTGAACCATTATTGTTGGTTTCT
GTTTTTAACTGCTTTACTATATCTCTTTATTCCTTACAGTAATTAGAGCA
CCAACTGTGAAAAAGCTCCTGCGCATCCCTGTCATACCTGTTGCACCAGT
TACAACAGCACCACCTGCCTTCTCTTTTACCGAAGCACTTAAAAAGTATG
TAGAAGCGCAAAAGAGGCAACCTCCACCACCTGCGAATCCATCAAATACG
AGTTCCATACCTACCCAAACAGAAAAGCCAGCAAATCAAAACAAACCTGC
AGTGTCATCGGTTCTGAGTCAAAGGATCAGGAGTTTAGAAAATCAAGTCA
AGGGAAGAAAGAAGGGCAAAAAGAGGTGA

Sequence Length:

9529

Sequence Checksum:

5b5fa9eb425ead0db5468be39e9a995b

View location in JBrowse:

DCARv2_Chr8:20392566..20402094-

Cds:

>DCAR_027702cds ATGTCGTCGTCGCGGGCGATCGACGAGGCAGCGGGGAAGATGGAGTATAT GAGTGACGTGGCGGGGGTGTTGAGTGATGGTGGCGTGGAGGTGGTGAGTC AGCAAGGTGTTGCGGCTGTTAGTGAGGTTGCGGTGGCTGCTGCTGATTCG TATTTTCCGGTTGCCGCTTTGCAGTATTTGATTGACTATGTTCATACTTA TACTGGACTGCCGTGGTGGGGAAGCATAGCTGCAACAACTATTTTGATTC GATGGCTGGCAGTTCCACTAATGATTAATCAGCTCAAAACTACTTCAAAG CTAACGCTTATGAGGCCGAAATTGGAGGAAATAAAGCAAGAGATGCAAGA CAGGGGTATGAGTCCTACTGCAGTAACAGAAGGCCAACAACGAATGTCTC AACTTTTTAAAGAATATGGTGTTACACCTTGGACTCCTTTAAAAGGACTC CTGATACAGGGTCCAGTTTTTGTCAGTTTTTTCTTTGCAATTCAAAACAT GGTTGAGAAGGTGCCATCTTTTAAAGAAGGTGGAGCATTCTGGTTTGTCG ATCTGACAACTCCTGATAGTTTCTACATCTTTCCAGTTTTGACAGCATTG ACATTCTGGATAACGGTTGAGTGCAATATGCAAGAAGGTATGGAAGGTAA TCCTGCTGGTGCAACAATGAAAAAAGTCATGAGGGTTTTTGCTCTTATCA CAGTTCCTATTACCATGTCTTTCCCAAAGGCTATATTTTGTTATTGGATC ACGTCTAACCTGTTTTCACTGTTGTATGGATCAGTAATTAGAGCACCAAC TGTGAAAAAGCTCCTGCGCATCCCTGTCATACCTGTTGCACCAGTTACAA CAGCACCACCTGCCTTCTCTTTTACCGAAGCACTTAAAAAGTATGTAGAA GCGCAAAAGAGGCAACCTCCACCACCTGCGAATCCATCAAATACGAGTTC CATACCTACCCAAACAGAAAAGCCAGCAAATCAAAACAAACCTGCAGTGT CATCGGTTCTGAGTCAAAGGATCAGGAGTTTAGAAAATCAAGTCAAGGGA AGAAAGAAGGGCAAAAAGAGGTGA

Pep:

>DCAR_027702pep MSSSRAIDEAAGKMEYMSDVAGVLSDGGVEVVSQQGVAAVSEVAVAAADS YFPVAALQYLIDYVHTYTGLPWWGSIAATTILIRWLAVPLMINQLKTTSK LTLMRPKLEEIKQEMQDRGMSPTAVTEGQQRMSQLFKEYGVTPWTPLKGL LIQGPVFVSFFFAIQNMVEKVPSFKEGGAFWFVDLTTPDSFYIFPVLTAL TFWITVECNMQEGMEGNPAGATMKKVMRVFALITVPITMSFPKAIFCYWI TSNLFSLLYGSVIRAPTVKKLLRIPVIPVAPVTTAPPAFSFTEALKKYVE AQKRQPPPPANPSNTSSIPTQTEKPANQNKPAVSSVLSQRIRSLENQVKG RKKGKKR*