Resource Type:
Gene
Organism:
Name:
DCAR_027609
Identifier:
DCAR_027609.gene
Locus Tag:
DCAR_027609
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_027609, is a part of gene, DCAR_027609. |
| The genetic_marker, MK006127 K3571, is located in gene, DCAR_027609. |
| The genetic_marker, MK006077 K3521, is located in gene, DCAR_027609. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_027609 | DCAR_027609.mRNA | mRNA | DCARv2_Chr8:21217114..21232721 |
Sequence:
ATGTTTCACCAATTCGGCGCAACAGCAGACTCCCTGAGCAAAGCATCAAC
CCTGGTCTTTCGTATCGGCACCGACGCTCATCTCTACGACGATCCCGATG
ACGTCAGCATCGCACCTCTCCTCGACAGCAAATTTGACTCAGAGAAATGC
GAAGCTCTCAAACGACTTCTCGCTCTTATCGCACAAGGGTTCGATGTCTC
CAATTACTTCCCTCAGGTCATACACCTATACTTACAAATTCTGTGTATAT
ATCTCACTCTTCCGTTGATCAGTTCTCATTTTTGTACGTTTATCACTCTT
TAGCAGATCAATTGGAATATATAGATAAGTATATATACTGTTACTGTTTG
GTGGATCAGTTATTTGAGTGATTAGTTCTGAAACTGCGATTCTAATCTGA
GGAGACAGTGTTTTGCCTAGATTAAATTCGTGTTTCGATATGTCATAGAT
ACATACTATCGTTTGTCGGTAAATTTGTTAGAAAATGTTTTAGGAGTGAT
TGATGTGAACTGCGTGATACTTGTTGACAGTGTTTTTTTTGCATCGACTA
TTCTCAGTTATTCTGTCACATTTTGGGAAATTTAGTAGGAATTTTTATAT
AGGTGAACTGTGATTCTAGTTGATCGAGGGAGTGTTTAGCTTGTGCCGAC
TATAATGAACTGTACTGTAACTTTTTAGTAAATTTGTTAGTAAATTTATG
TTCCAAACTACACTGAACTAACTTAATTTGGATCTAGTGGAATTTGAACT
GAAATGTGCCTTTGTATAATTTTTTAGTTTTTGTGTTTTCTGAATGGTGT
GACACTACAGGTTGTTAAAAATGTGGCATCTCAATCGTTGGAGGTGAAGA
AGCTGGTTTACTTGTATCTGCTGCATTATGCTGAAAAGTGAGTACTGAAT
TCCTTATTTATGTGGTACTTACATCGAGTAAAATTTGCGAGATTATATTG
GTTGATGTATGTCAAATTAGTGAAACAGTGTGAATTATGTGAGTCATTAT
TTACTTAACACTGGTAATCGTGCTTGAAATTTTGCATACTATTAATTTGT
TGAGTCAGTAGTCAATTTTTTTTAAGTGCAATACTAAAGCTCAGGGCGGA
GCCGGTCATATGCTAGCATATGTGGTGGCTCACTCTGAACTTTTAACAAG
TACCTTGGTATGTAAATGTGACTACTACTCCATTGGTACAGCCAGCAAAA
ATCGTTCCTTATAGATTTTTGTTTATATATAGAGAATATTAAGAGATCAC
AGATAGGCACCACAATAAATGTATTAAATATGATAAATAGGTTATTATGA
AGTTTACCGTAATATATTTCCCAAGTCCTTTCCTGGATTAAACCACAAAA
GTTTTCGTTTTTGCTAATATATACAATTCTCTTTTATATTTATATACAAT
GTAATAAAGTGTTTCTCGTTTTAATGTATGTGATATTTCTGAACTTACTT
TGACTATCAATTACTAGATTTTTTTTTTAATGCAACTAGAATACATAAAT
TACAATCAGAAATCAACTAATTGTAATGGACTGCTTATTTATTAAAAAAA
CACATAATTTGTTCATATTGCACTGGATGGTAAATTGTATGATCTTTTAG
AAAGTTATATTAATTAAATGGTATTATACTTCAAATTAAAAATATAACAG
AAAATTAACTGAACAAATTTACAGAACAGCTGTGTACAGAACAATGTGAT
ATGACAAGATTTTTTTGTTATTATTAAAATCTGGCATACCCTGACTTGTG
AATTGCGATCCTCCCTCTGCCAGTAGTAATGTAGTATAGCTATTTGAGCC
TGCCTTCTGCTCACTGCATGTATTAGGACTGTGCATGTGTTTAATAAAAT
GCTTGAATGTTGGCATAAAATATGTTGCAAAAATGTTGCATGCCAGTGAG
TTGATGTCTAATGCATATTTTAGGCGTCCGAATGAAGCTTTACTCTCAAT
CAATTATTTCCAGAAAGACTTGGGGGATCCAAATCCATTAGTGCGAGCAT
GGGCACTCCGTACTATGGCAGGAATACGTCTACATGTAGTTGCACCTATT
GTTGTCGTTGCAGTGGCGAAATGTGCAAGAGACCCATCAGTATATGTTAG
AAAATGTGCTGCCAATGCTCTTCCCAAGCTGCATGATTTGCGCTTGGAGG
AGAACACTGGGGGAATTGAGGAGGTGGGTGAAGTATTTTCATACATGTCT
TTCGTTTGCTGGTTTGATTTAAGTGAAAATAAAATATATAAAGGAAATGA
GCTGAATTTTGTATGCAGTTTGATGCTTGCCTAGTTACCTGTTACTATTA
TACTTGTGTTGCTTGTTCACCTAAATCAGGGGTGAATTTAAATCAAAATT
GGAAGCGCTAAGATGCTTATTAAATCAAAATCAGAAGCGCTAAGATGCTT
ATTACATATTCTTCTTAAGAAGTTAATGAGATTAAGCCGGAAATGAATAT
TTGAACGACGTAACACCTTTCTAAGTGACACTTGTATATATTTGCAACAT
CAGGTTCGCTCTCAGCCCATAGATAAGGTGTAAGTTTCTATAATCCACAG
GTAACTAATTAATTATATCGACCGTGTTTTGTAATTGAGGCTCGGAGGGT
AATTACCTCCTTTTAGTCATTTTACTTTTAGATCATCTGACATCACCGTA
CCACCCCCGAGGTGGATAATTATATTATTAGTTTGACAATCTATATTTTA
ATTATCTAAACAATTGAAATTTTCCAAAACAATGACGCTACTGGTATTAT
TCTGTATCCATTAACTGGCAGGCTTGCTGGCCATGCTCACTTGAATAGGT
CTTTCTACTCGCATGTAGTGGTTATCCTGCAAGGTCCAAATCTCATGTCA
GGCATGCATAGTGCAAATTTATGTATTGGAGTTTGCATATGTCTGCCATG
TTAAGAGCTTGAGATGAGGTAGTCTGCAAGTCTTTGTCACTTCATGTTAA
TTTAGTCATGAATTTTAGACCGGAAAAATGACTCCAGGAAATATTGGAAG
TTTCAAATTATTCATCAGCAATAGTAGCTAAAAATGGTCTATGAATTAGA
ATACAGAATTTCCTTTCAGATATATTGTTGAATTTTGAATGACTAACTTT
TGTATCTTGTCTCTTACTTGCGTAGTATACGAGTACATCTCACTGAGCAT
GTGTCTTAATAAGAGTCTTAATGGAAGGCTCCTTTGGGTGTATGTCCATA
TGCATATTAGTTTTGTACTTATCAAGTACCATGCAGCAGTCATTAATACA
GTACAGTGTATTTTCATGTTATGCAGATAGTTGGAATCTTGCTGAATGAC
AACTCTCCTTCTGTAGTTGGAGCTGCTGCAGCAGCATTTGCTTCTGTATG
TCCGAACAATCTGAATTTAATTGGTAGACACTATAAAAAGTTATGCGAGA
CACTTCCTGATGTCGAGGAGTGGGGCCAGATTGTCTTAATTGAGATTCTT
TTACGCTATGTGATTGCTAGGCAAGGGCTTGTAAGAGAATCCATTATGGC
ATCTCCTTATTCCGAATACCTTGATTCTGAAATTGATGGTCCAGATAGAG
ACTTTGCGGTTAAGGAAGAGACTAATGTTGTTAGCATTGGGGCATATCAG
TCTCAATTATTACAGATGGCTTCTAAGAGCTACCTTGAAGGACCAGAAAA
ATATCTTTCACAAATGAATTTTGAAGACAAGGGCGCATTCCAATCGGGAT
TACCAAAGTTTACATCTGCCAAAAATGATGATGTAAAGATCCTGCTTCAG
TGTACTTCACCTTTGTTATGGAGTCATAATAGTGCAGTGATACTTGCTGC
TGCTGGGCTACACTGGATTATGGCACCCAAAGAGGATCTCAGAAGAATTG
TCAAACCACTCTTGTTTATCTTGAGATCGTCTAGTGCCTCGGCATATGTG
GTACACCATCTCTCTAATAGTATCTATCAAGTGCTGCAGTACAGATTATA
ATATATAGATATGTTAAATAAATAAGTTACAAGATAGAACCAGGGTAATT
TAAAAGCAGAAGCATAACTACATCGAAAGGGATACAATTTATGGATCACA
ATCCAAGAAGAGACTCAATATGGTAATACTATAAGTAATAGTTCAGTAAT
CAAGTCTTTATAATATGCGGGAATCACGTCGCTTGTATAGGGAATAAAGC
CCTAATATCCTAACATTATGGACTAAAGCCCAATACAATTGGGCTTCTAA
TATATTAACCTACATGTATAATGAACTCCTAGCCCCAGATAAATTCAACT
ACCACTTATATTGAAACTTTTTAGTAACATTTATAAATTATAAAGTACTC
CTCTATGTTAACTCTGTTCCTTGTCATCCTTCATTTTCTGTGTGCTTTCA
TGCATTTCTGCGTTCTTATATGAATTTTGCACATGTTACGTTATGATTAT
AGACTATAAAATTCCGTAGGATTTGTATGTCCTATCCCTAGATACATGCC
CCTGTAATGTTTGGTGTAGCAAGGGTCCATGTTCTTTTCTGAGTGGCTTG
GGGTTTTTTGCACTATATTCGCGCACACACTTTTTCTGCACTGAAACATG
AAGCTTCGAACTCCCAATGGAAGGAGAGGTGTGATGTCTTTAGCACTTCT
CCTCTGGTGCTGCATGTTTGTCATAGGACTTGAACATGTTTTGAATTTTT
TTTGACCAGATTCTTTTACATATTTTTTAGGTATTAATTGCTTTTTACAG
GTGCCTTTTTATGTAAACTACAGTAATTAATTGTCACTGGACCCTATCGG
ACGTTCTACTTTTTACCACTTATATTTATATATGTGATATACACACAGAT
AATTGTGTTTCAAAGCAGTGATGTGGCCTGATATCAAAATGTATGAAGAG
AGCAGAGTGAGACCCTTGTACAGAGAGAAACGCAGGAGAAGTGGAAGTCT
GTCTTTTGTAATATCTCATATTAATATATTTTCCTAAATTTCTTTTAATA
CGTTTACATTGTATTAATACTGTATCAGAAATTCTTTTTGATTCTCTCTG
TATGTTTCTTTGATTCTCTGTATATATCAATGCTATTTTAATATTAAAAA
TTGCTACATAGATCAAAAATTAAAAGTATTTTTTTAACTGTTTAAAGGAA
ATTTTTAAACATAAACAAACAAATAAATGATGAAAATCATCAAGATATGA
ATGACTCAATATTTCCTCTTCTATCTAAATTCTAAAGTTAAATAAACAAT
ATATTTTTAATTTTTATCTTTCATAAAATAACATTTTCAATATACAAGTT
AATAAAGATCTACTGTATTAATAATACTTTTTGCCCCGAATTACTTGCCT
AGCTAGGCTGGGTGGAAATTTATTTTGGCCACCATCACACTCTGAGAGTC
TGAGGCTGGCTCTGCCACTCTGTATGGCTGTCATGCCCAGACCTTTAATT
TTCGGTGCTAGTTTAACTTTTAGCTACATACAAGCACTACCTTTTCTTTG
TAAATCTCTTGATGTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAATAAAATAAAATAAAATAAAAATTCTTATATGGCCA
ATATCTGAAATCAAATTACTTTAGCTTGCTACATAGTCATACAATGCCAT
GAAAGTTTCTGGGTCAGTGATTTGATTTATTTTGTACTGGTTTCATATAT
GCTATTACTATGTACATCTAATATTTCATGCTTCGTAATTGCATGTCTGT
CAGTACTAAGAAGACTATAATGGTGATTGACCTACTTCTGAGTTCTCATA
TTCACTCTATGGTGTATGAGTCTCCTATGTGTGAAATTTGAAATTAGTGT
ATAACAATGCTAGTCAGTTTCATTACTTTTGGTGCAGAGTACAGCATTGA
CGACGTGAATAATGATATCCCAAGTCTTTAAAGTTGATTATTCAAAAAAG
ATTTTGTTTGAACCATTGTACATCTTGAAACCATGTATATAGCCTTAAAT
TTTGGCTTATACATATGTATGCTTGTTGATGCAGGCGCTCTGCAATATTC
AAGTGTTTGCTAAAGCGATGCCTTCTCTCTTTGCTTCTTACAGTGAAGAC
TTCTTTATATGTTCCTCTGATACATATCAAATAAAGGCCCTCAAACTTGA
GATATTATCTAACATTGCCACAGAGTCATCTATCCCGGTTATATTCCAAG
AGTTTCAGGTAATCCATATTTTATTGGTTTCCACTTTCCAGCATGGCCTG
TTGATAATAACTAAAAACAAATTATGTCGTTTTTTTGCCTTTTTTAAGGA
AAATAGATATCTTTTATCTGTTACTTTTTCTTATTTGTCTGAATAAGTGA
AACGTAGAATAGGTGTGTGTGTGTTTGTTTTTTTTCCTTTCTAACTGTCT
ACAGGGTTATATGTATTTTGTTATTATGTATGTTTGAGTACTGTAAAAAC
ACCAATTGGTCATGAATGTTGTGCCTAAAGACATGTTTGTGGAATTAATT
TTAAAGAGTTAGAGGCTTGTTTTGGGTAGTCCAGGAGAGTTGCTGCTATA
AAAGGCCAACGCAGTTGGGAGGAAATAGTGTCATATATGTGCTTTGTGTA
ACAATTTAGCCATTTTAGTGCTTGTAACTATAAGTACTTATTTTGTGCCA
GGGGACCATGGATAGCTTAAAAAGAAAGGGATAATAGTTTTCTTTTCAAC
TCTATCTTTGAATATTTATACAATGATTGCTAGGGTTGGCATAAAAGAAA
GTGTCGGGGTTTGCTTGTTTAGAGTACCATTAGCTGCAAATTAAATGAAC
CTGTCCTTTTCAAGTAGTCTATTCATTTGGATTCTCTTTTAACCTTGGAT
CTCACCTTTAACATTCAGTCTTTCACCTTAATAGGGTTATATTCTTATAG
GAAATTGTAGTGTACACTGTACACATTATTTTTTCAGCTTAATGCCAAAA
TTGTTTAATAAAGGAGATAACAGAGATATGAGTGGTTCTGTTTGCTAGTC
TCTATCAATGTGCATATACCTATAGTCCAGTTATGAGATACACGTAATCT
GTCACTACTACTACCTATGTGCCTACCATATTCTTATACTTGCTATTTAT
TATTATGCATCCGCATTCCTTGTTTCTGTTGTACCTAATCTACCCATGTG
CCTACCATTTTCAGACATTTGTTATTATGCATCCTTATTCCTTGTTGCTG
TAGTGTTTTATTCCTTGGTCCTTTGTTTGATTCACATGCAACGATGCTGA
CCCTGTTGTATTGCTAGGATTATGTTAGAGATTCCGATAGGAGATTTGCA
GCAGATACTGTAGCTGCAATAGGTTTGTGTGCACAAAGGCTTCCAAATGT
AGCTAATACCTGTTTGGAAGGATTATTAGCTCTGACTATACCCCGTAAGT
CACCTATTGTTTCATTTTTTTTTCGTAAATTTGTTTTTGTATCGAAATAT
TTTTGGTTTCATCTTAATTCTTTGAAGGCTCAACTATTGCAGAATCTTTG
AATAATGATACCGAGTCTTCAGGTGGAGATTCAATTGTTCTAATTCAAGC
AATCATATCAATCAGATCAATCATAAAACTAGATCCACCACGTCATGAGA
AGGTTTTTGAGCTGCAATGTTACTCATTCAAGCTAACGATGTCTTATATA
TAATTTCTCCCCCATGTTATTTATCTAGATACATCATGTCATGTGTATGC
TTAGTTTTTTTAAGCCCCAAGGTATTCTACGTAGTCTAAAGGGTATTGGT
AGATTTTGTCATCTTGAAGTGGAGTTGATTTAATCTTTTCCTAGTGCTCA
AGAATCCGTTTCACATATTACATATGTATGCGTTCNTCGTTTTTTTGCCT
TTTTTAAGGAAAATAGATATCTTTTATCTGTTACTTTTTCTTATTTGTCT
GAATAAGTGAAACGTAGAATAGGTGTGTGTGTGTTTGTTTTTTTTCCTTT
CTAACTGTCTACAGGGTTATATGTATTTTGTTATTATGTATGTTTGAGTA
CTGTAAAAACACCAATTGGTCATGAATGTTGTGCCTAAAGACATGTTTGT
GGAATTAATTTTAAAGAGTTAGAGGCTTGTTTTGGGTAGTCCAGGAGAGT
TGCTGCTATAAAAGGCCAACGCAGTTGGGAGGAAATAGTGTCATATATGT
GCTTTGTGTAACAATTTAGCCATTTTAGTGCTTGTAACTATAAGTACTTA
TTTTGTGCCAGGGGACCATGGATAGCTTAAAAAGAAAGGGATAATAGTTT
TCTTTTCAACTCTATCTTTGAATATTTATACAATGATTGCTAGGGTTGGC
ATAAAAGAAAGTGTCGGGGTTTGCTTGTTTAGAGTACCATTAGCTGCAAA
TTAAATGAACCTGTCCTTTTCAAGTAGTCTATTCATTTGGATTCTCTTTT
AACCTTGGATCTCACCTTTAACATTCAGTCTTTCACCTTAATAGGGTTAT
ATTCTTATAGGAAATTGTAGTGTACACTGTACACATTATTTTTTCAGCTT
AATGCCAAAATTGTTTAATAAAGGAGATAACAGAGATATGAGTGGTTCTG
TTTGCTAGTCTCTATCAATGTGCATATACCTATAGTCCAGTTATGAGATA
CACGTAATCTGTCACTACTACTACCTATGTGCCTACCATATTCTTATACT
TGCTATTTATTATTATGCATCCGCATTCCTTGTTTCTGTTGTACCTAATC
TACCCATGTGCCTACCATTTTCAGACATTTGTTATTATGCATCCTTATTC
CTTGTTGCTGTAGTGTTTTATTCCTTGGTCCTTTGTTTGATTCACATGCA
ACGATGCTGACCCTGTTGTATTGCTAGGATTATGTTAGAGATTCCGATAG
GAGATTTGCAGCAGATACTGTAGCTGCAATAGGTTTGTGTGCACAAAGGC
TTCCAAATGTAGCTAATACCTGTTTGGAAGGATTATTAGCTCTGACTATA
CCCCGTAAGTCACCTATTGTTTCATTTTTTTTTCGTAAATTTGTTTTTGT
ATCGAAATATTTTTGGTTTCATCTTAATTCTTTGAAGGCTCAACTATTGC
AGAATCTTTGAATAATGATACCGAGTCTTCAGGTGGAGATTCAATTGTTC
TAATTCAAGCAATCATATCAATCAGATCAATCATAAAACTAGATCCACCA
CGTCATGAGAAGGTTTTTGAGCTGCAATGTTACTCATTCAAGCTAACGAT
GTCTTATATATAATTTCTCCCCCATGTTATTTATCTAGATACATCATGTC
ATGTGTATGCTTAGTTTTTTTAAGCCCCAAGGTATTCTACGTAGTCTAAA
GGGTATTGGTAGATTTTGTCATCTTGAAGTGGAGTTGATTTAATCTTTTC
CTAGTGCTCAAGAATCCGTTTCACATATTACATATGTATGCGTTCGGGCC
GGTTTATGTTCTGCCTGTATTTTTATTCGGTTCTGTTTGCACCCTTAGTA
CCGAGACATAGATTTCATTCATTCTTGCTAATCCATCTTTTTCAAGTTTC
TCTCCCAGTGCCAGTGCCTGGGTACCAACCAAAAGAACCCTTGGGCACGT
GTCAAGAATTGATAGATGAATATTGGGACATGACAACTGCATTTTCTTGA
GCAAATGACTCGGGGTTGTCATTATAAAATTACGAGCCATGTAGTCAATA
TAATAGAAGCTTGTTGTCAAGGAAATAATTATTGATATAAATAATAGTCC
TTGTGCCAATACAGTTTTCCTTGATATTTTTTCCCAGCTTAAATATTGTA
TATTTATACTTTATAATTCTAAAGGGGTAAGCTTATGTGTAGGCTTGTTT
AGTTACTTTAGGTCACACATCATAATAAAATTATAATCCATGTCCAGAAA
AGTATGTTTTGCGGAACACTCTTAAATTTGAATTTTCAAGAAACCTTGTT
CATGTGAGCCAAAATTATCCAGTATAGGTTCTTTATAGGTTAAAAGTTAC
GCACTACGCAAACTTTGGTACCTTACCTCTCCTTGTAATAAGAGGCTCTT
AATGTACAAATAATATATACGGCATAAAGAATTTGATTAAGATAATTTAT
GTTATTTCTGTATCTATAGATCAGTTTATTGGAGTTGCTTGTTCCAACTT
GCGTATCTTTCTGCTGAGTAAGCTGTATGTAGTGTATAGATGCTTTAAAT
AAGCTGCTATCCTATACTCTCTTATTGCTCTATTTCGGTAAATTGTTTAG
ATAAACAAACAATTTTGCTTATAAATATATTCACTTTTTGCTCAAGGTAA
TTGTTCATCTGGTGCGAACTTTGGATTCAATTAAAGTACCCACAGCCAGG
GCAATGGTTATTCGTATGATGGGAGAGTACAACTCCTCTGGTCACATTCT
TCCAAAGATGTTGACCTCAGTACTTACGTATCTTGCTTGCTGCTTTACTA
AAGAAGCACTTGAAACTAAGCTCCAGATTCTATATGCTGCTGTCAAGGTA
ATTTAAATTTGAACGTTTCCCTTGTTTAACTTAGTACTGGATAATCGAAG
TTAGTCACCAAATTTTGTCACTGTCACTCTAGATTGTCAAGTGTGAATTT
AAGTGATGACGCCAAAACTTCATGCTTTCTATTTTAAAAACCTACTGAAA
ATTTGGCGTCTTAAATGAAATTGGTTTAGAATATATTAATGTATCTCATA
TCTGTGCTGTAACTTTGATCACAGCTCTAATAGTGTTGAACATTTTTTTG
GTCTGTCTGAAATTGAAACTATCGATTTGGTTTAAAACTGATTAATAACC
AAGAACCACTCAGCTTTTCACCAATAATTTGTGCACATCTCACAAGCAGA
CTCAGGAAAATATTATTGTATATTTTTATTATGCTGAGAGATCGTAACAA
GAGGGTGAAAAATTGAATTGGAAGCTGTTAATATAGAAATTACATCTGGC
ATCTTGTTTATTTTTGTTGGAGGGAGAATAAGAAATGATGACAGGAGAGA
CATCAACAGAAGAGAAAAGAAAGAATAGGTAAAAAGGTGTCTAGCAATTT
GTATTGGAATTACTAAAAAAATAAAAAAAATTTAAATATGGATTTGGCCT
TTATCTTTACTCAAACTCAACTGATCAAAATCTGCAACAGACAACATATA
AATTAAAAGCAATGGTCCAACCTTATAATGCAACCTTATATAATTACAGT
AGGTGGTTCGCTTTTGTCGGTTGGTTTGGAAATAAAAACTGAACCAAACA
GAAAAATTCGGGTTTTTAGTTGCATTAATGATAACCAAACCAAGTCGTAA
TAAAACGGCAAAATTCAGTTTGGAGCAATTTCAGATAATTTTTTGCTCAT
CCTGAAAGGATGTCAATTGTGGTTCTGTAGTGATTATTATGTTGTATGCA
TCTTTATTTCTTCTTTATCCTTTTCCATCCATCATGTTGTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTCCCCCCCTCCTTTTGCCCCCCCCCCCCCCCCCCCA
AGGTAAACCATCATCTTTACAGACATCTGGTCTCTGCAAGTTGGTGGAAA
TTGGACTCATACACCTAATATCATATCACAAATTACAATATGGTTGTCAA
AAATGGTCAGAGTATAATAATATTTGTGTAGGTATCCTATTTTTCCTGAA
ATTTGCTTCTGTTCCTTGTCTTTATTCATGAAGTTGTTCTTTTTCCAGGT
CGTATTATGTGCAAGAGGGGATGATCTATGTGCTTCCAAAAAACTCTTAA
GCTATGTGCTTGAACTTGCCAAATGTGATATAAATTATGACATCCGTGAC
CGAGCTCGTGTTATAAGAAAACTTCTTACGCAGTACTTATTTTCCTTTGA
ACTGGTGGAAGAAGCACGATATATATCAGAATCAAAGAACATGTCATGTC
TACTAGCAGAACGATTATTTTTGGAAAAACCTAAATCAATGTCAACTGAA
CCCAATAACTATCGATTTTATCTTCCTGGATCGCTTTCTCAGATAGTTCT
TCATGCAGCTCCAGGGTATAATCCTTTACCGGAGCCATGTAGTTTGACCA
TTGGTGATAGTAGTTTCGGTTCAAATATCGTTAAGGGTGGCACTCACAGT
GATTTATACGGAGTAGATGATTCTGAAAGAGCATCGGGTTCTTCAGATGA
TGATAGTAACTCAAGTGACGGTTCTGAAATTTCTGAAGCTGGCTCAAGTG
GCAATGATGTTGGTGATGAGAGTGGGTCTGCAAGCGAGGGTGACGAGAAC
ACTGGGTTATTAATTAATTTTTCAGATGTTGGTAATGCTGCATATGCAAA
CCTTAATGGAAACTCAGAGGTGAATGATCCTCAATCCAGACCTAATGATT
TTGGCGAGCTCATGTCTAACCGAGCTCTTGAATCTTGGTTGGATGAAAGC
CCTGATTCAAGCCGAAATGCTCCTGAATCAAGTAGTTTCCAGAATTCATC
AGCTAGAATATCTGTCGGGTCCCTCTCTGAGAGGGTAAAACCAAAATCTT
ATACACTCTTAGACACTGTAAATGGAAATGGCTTGAGGGTGGATTATGTA
TTCTCATCTGAAATGTCAAGCAAATCCAAATTTGTTTGTTTAGAAGTATC
TTTCAAAAATTGTTCCAATGAACCTAAAGAGAAAATTTTGCTGTTTGATG
AGGACATTGAAGGGGGCCAAGATAACTCAGAGCAAGCATTGAGAACAAAC
GAGAGGTGATCACTTACTATGCTTTTGAGAGCACTCTATTCCTTTTCCGT
ACTTCCCTTGGAACTATGGTTATTCCACAAATTTTCTTTTTGAAGTTGGT
TACATATCATCTGTGTCTTTCATACATAATATTTACAGTCAAACATTTAA
CTCAGCCAATTTTGGTTTATTGGTCGGCAAACAATATTTGCAAAGTTTTC
ACTCTCCAGGAAATGTACTGCCCCTCCTCTTTATATATGGTTGGTAGACC
ACGGACACCAATACTTTAACTAGGTTTTAATGTAATTGGTACTTCAACGC
TGTGATGCCATCAGTATAAAAGGTTTACATGTGACTAAAAAGGTCTGTTG
ATATGTGTACTGTATAAAGAAACAATGTTTTCGGATCAATGGTGAAGTTC
ACATGAAATCTTCTTTTTCCCTAAGTATTGGTTTCAGTTTACATTGATTA
GGTATTCCCAGAAACAACTTTTCTGCTAGTAGTCATGACTTGTTTTTTTC
TTCTGACATACATTGTGCTTCTTCCACAAGTTCAAAAGAACATATATCAT
CTTTTTTTTATATATATATTTAACTTTATCGAGGTCTTAAGCCGGAAAAT
TTACCTTTACACATACTTCTTCATATTTGAAGTTTTACTGAAGTAGACCT
TCTGGTGAATGTCTTTCCATACGTGACTTAGTGCATGCTTGCTAGACACT
GAAGTCTAGTTGAATTTTATTACTTTCTGTTTCTGATCAGCCAATTTATA
TTGTAGATGCACTATTGTCCAGCAAGTATTTACATGTTATATGTATCCCA
TTGAGCTTTCCTTGTATTTTAACCAAGTCCATAAACGATTATAATTAAAG
TATCTGCATGTCTTTGCTTCAACTTGTTAGATATTTGGTCAGATGATATG
TTGTGACCCCAATAAGTTCACATATGTTCATCATACAATGCAGTTCCTCA
GCACCACATAACAATGATGTTAAAGTTATAGTTCCTGTGGAAGAAATTCC
TTGTCTAGAACCTGGTCAGAGTTCAAAGAAAATCATGGAAGTTCATTTCC
ATCATCATCTCTTGCCTATAAAGCTAGTTCTACGATGCAGTGGATTAAAG
CTTCCTGTTAAGTTGTGGCCTGACATTGGATACTTTGTAAAACCCCTGCC
AATGGATGATGAAGAATTCTTCAGGAAGGAATCTCAACTCCGTGGGATGT
TTGAATACAATAGAAGGTCAGTTGTTTGGGTTACATTTCTCATACCATTT
GGACAGGTCATTCTTATTGTTCTACTATATGTCTATGTCTGTAGTGGGTT
AAATATTTTTTGCTCGTGGTATGACTATGTATGCTAATTTCATACTAACT
AATACTATGATATTTATGATTAGTGTGTTTTCTAATCCTATTCCAAGACA
GTAGTTTACATGTTATTTAGAAAATGGAAATTATGGAATATCTAAAACAG
AAGTAGAAGAAGAGAAGAAAACAGTATAAAAGTAGTGAATTGTAAAGCTT
GAAAGAGGTCTGTCAGTCCCATTGGACGGTTGACTTGATATTTGCGCAAG
TGTAATACAAAAATTGGTGAACTTGATTTTTTTAACATTGTAAATCCAAC
CTTCGATTCACAAGGCAATTTAAGTGTTCTCCTAAGAGAAGGAACATTAC
AAGGGCACCTGATGAGAGCCGGGGCACAGCACTACATTACACCATGGCAC
TCATACAGTCACATCTTAGCTGAAAATCAGGCATATTCTACCCCTTTTGA
TTTTACAGTTATTGCCTCCGGGAAGATATATGGGGCCATTGTAGTAAGTT
TAGAAATGCTATTACTTTTCAACATGCAAACAACTCGTATCTATTAAGAA
TGTAGAGTCTTCTAAAACAACTTGTTTAGACTGTTCATAGTGGGTTTAGA
CTGGGGATGGTCACTTATTTTCTTGTTTCTTTCCAATAGCAAAGGAGAGG
ACCAAAATATATATAGAAGATAAACTGAATCCACTGACACCAGGTTTACC
ATATGGTTGCGTAGAGCATTTTTCTTTGTGATCCGAATTAGAAGAGTAAA
TGTATTTGGCGGGCTTGTCTTTGTCCTGATCTCACTTTATAATTAGAGGT
AAATGCCATTGCTTTCAGAGCTTAATGTTATCTTCATTTATAACAGGTGT
ACCTTCATTGATCATGTGAGGGAGCTGAAAGATGAAAAGGGTGAAATCTC
TCTGGTAAAAGACAAGTTTCTTGTCGTATGTGAAACTCTAGGATTAAAGA
TGCTCAGTAATGCAAATCTTTCTCTCATTTCGGTGGACATGCCTGTTACT
ACAAACCATGATGATGTGTCAGGTTTGTGCTTGCGGTTCGCTTGTGAGAT
TCTGAGTAACTCGATGCCTTGTTTGATCACTGTTACCCTCAGAGGTAATT
GCTCTGAACCGCTTAATACAACTGTGAAAGTCAACTGTGAAGAAACTGTA
TTTGGATTGAATCTGTTAAACAAAATAGTCAGTTTCTTAGCTGAGCCCCC
TCTTTAA
Sequence Length:
15607
Sequence Checksum:
7d76cff76dfa540093adae36774d7d57
View location in JBrowse:
Cds:
>DCAR_027609cds ATGTTTCACCAATTCGGCGCAACAGCAGACTCCCTGAGCAAAGCATCAAC CCTGGTCTTTCGTATCGGCACCGACGCTCATCTCTACGACGATCCCGATG ACGTCAGCATCGCACCTCTCCTCGACAGCAAATTTGACTCAGAGAAATGC GAAGCTCTCAAACGACTTCTCGCTCTTATCGCACAAGGGTTCGATGTCTC CAATTACTTCCCTCAGGTTGTTAAAAATGTGGCATCTCAATCGTTGGAGG TGAAGAAGCTGGTTTACTTGTATCTGCTGCATTATGCTGAAAAGCGTCCG AATGAAGCTTTACTCTCAATCAATTATTTCCAGAAAGACTTGGGGGATCC AAATCCATTAGTGCGAGCATGGGCACTCCGTACTATGGCAGGAATACGTC TACATGTAGTTGCACCTATTGTTGTCGTTGCAGTGGCGAAATGTGCAAGA GACCCATCAGTATATGTTAGAAAATGTGCTGCCAATGCTCTTCCCAAGCT GCATGATTTGCGCTTGGAGGAGAACACTGGGGGAATTGAGGAGATAGTTG GAATCTTGCTGAATGACAACTCTCCTTCTGTAGTTGGAGCTGCTGCAGCA GCATTTGCTTCTGTATGTCCGAACAATCTGAATTTAATTGGTAGACACTA TAAAAAGTTATGCGAGACACTTCCTGATGTCGAGGAGTGGGGCCAGATTG TCTTAATTGAGATTCTTTTACGCTATGTGATTGCTAGGCAAGGGCTTGTA AGAGAATCCATTATGGCATCTCCTTATTCCGAATACCTTGATTCTGAAAT TGATGGTCCAGATAGAGACTTTGCGGTTAAGGAAGAGACTAATGTTGTTA GCATTGGGGCATATCAGTCTCAATTATTACAGATGGCTTCTAAGAGCTAC CTTGAAGGACCAGAAAAATATCTTTCACAAATGAATTTTGAAGACAAGGG CGCATTCCAATCGGGATTACCAAAGTTTACATCTGCCAAAAATGATGATG TAAAGATCCTGCTTCAGTGTACTTCACCTTTGTTATGGAGTCATAATAGT GCAGTGATACTTGCTGCTGCTGGGCTACACTGGATTATGGCACCCAAAGA GGATCTCAGAAGAATTGTCAAACCACTCTTGTTTATCTTGAGATCGTCTA GTGCCTCGGCATATGTGGCGCTCTGCAATATTCAAGTGTTTGCTAAAGCG ATGCCTTCTCTCTTTGCTTCTTACAGTGAAGACTTCTTTATATGTTCCTC TGATACATATCAAATAAAGGCCCTCAAACTTGAGATATTATCTAACATTG CCACAGAGTCATCTATCCCGGTTATATTCCAAGAGTTTCAGGATTATGTT AGAGATTCCGATAGGAGATTTGCAGCAGATACTGTAGCTGCAATAGGTTT GTGTGCACAAAGGCTTCCAAATGTAGCTAATACCTGTTTGGAAGGATTAT TAGCTCTGACTATACCCCAATCTTTGAATAATGATACCGAGTCTTCAGGT GGAGATTCAATTGTTCTAATTCAAGCAATCATATCAATCAGATCAATCAT AAAACTAGATCCACCACGTCATGAGAAGGATTATGTTAGAGATTCCGATA GGAGATTTGCAGCAGATACTGTAGCTGCAATAGGTTTGTGTGCACAAAGG CTTCCAAATGTAGCTAATACCTGTTTGGAAGGATTATTAGCTCTGACTAT ACCCCAATCTTTGAATAATGATACCGAGTCTTCAGGTGGAGATTCAATTG TTCTAATTCAAGCAATCATATCAATCAGATCAATCATAAAACTAGATCCA CCACGTCATGAGAAGGTAATTGTTCATCTGGTGCGAACTTTGGATTCAAT TAAAGTACCCACAGCCAGGGCAATGGTTATTCGTATGATGGGAGAGTACA ACTCCTCTGGTCACATTCTTCCAAAGATGTTGACCTCAGTACTTACGTAT CTTGCTTGCTGCTTTACTAAAGAAGCACTTGAAACTAAGCTCCAGATTCT ATATGCTGCTGTCAAGGTCGTATTATGTGCAAGAGGGGATGATCTATGTG CTTCCAAAAAACTCTTAAGCTATGTGCTTGAACTTGCCAAATGTGATATA AATTATGACATCCGTGACCGAGCTCGTGTTATAAGAAAACTTCTTACGCA GTACTTATTTTCCTTTGAACTGGTGGAAGAAGCACGATATATATCAGAAT CAAAGAACATGTCATGTCTACTAGCAGAACGATTATTTTTGGAAAAACCT AAATCAATGTCAACTGAACCCAATAACTATCGATTTTATCTTCCTGGATC GCTTTCTCAGATAGTTCTTCATGCAGCTCCAGGGTATAATCCTTTACCGG AGCCATGTAGTTTGACCATTGGTGATAGTAGTTTCGGTTCAAATATCGTT AAGGGTGGCACTCACAGTGATTTATACGGAGTAGATGATTCTGAAAGAGC ATCGGGTTCTTCAGATGATGATAGTAACTCAAGTGACGGTTCTGAAATTT CTGAAGCTGGCTCAAGTGGCAATGATGTTGGTGATGAGAGTGGGTCTGCA AGCGAGGGTGACGAGAACACTGGGTTATTAATTAATTTTTCAGATGTTGG TAATGCTGCATATGCAAACCTTAATGGAAACTCAGAGGTGAATGATCCTC AATCCAGACCTAATGATTTTGGCGAGCTCATGTCTAACCGAGCTCTTGAA TCTTGGTTGGATGAAAGCCCTGATTCAAGCCGAAATGCTCCTGAATCAAG TAGTTTCCAGAATTCATCAGCTAGAATATCTGTCGGGTCCCTCTCTGAGA GGGTAAAACCAAAATCTTATACACTCTTAGACACTGTAAATGGAAATGGC TTGAGGGTGGATTATGTATTCTCATCTGAAATGTCAAGCAAATCCAAATT TGTTTGTTTAGAAGTATCTTTCAAAAATTGTTCCAATGAACCTAAAGAGA AAATTTTGCTGTTTGATGAGGACATTGAAGGGGGCCAAGATAACTCAGAG CAAGCATTGAGAACAAACGAGAGTTCCTCAGCACCACATAACAATGATGT TAAAGTTATAGTTCCTGTGGAAGAAATTCCTTGTCTAGAACCTGGTCAGA GTTCAAAGAAAATCATGGAAGTTCATTTCCATCATCATCTCTTGCCTATA AAGCTAGTTCTACGATGCAGTGGATTAAAGCTTCCTGTTAAGTTGTGGCC TGACATTGGATACTTTGTAAAACCCCTGCCAATGGATGATGAAGAATTCT TCAGGAAGGAATCTCAACTCCGTGGGATGTTTGAATACAATAGAAGGTGT ACCTTCATTGATCATGTGAGGGAGCTGAAAGATGAAAAGGGTGAAATCTC TCTGGTAAAAGACAAGTTTCTTGTCGTATGTGAAACTCTAGGATTAAAGA TGCTCAGTAATGCAAATCTTTCTCTCATTTCGGTGGACATGCCTGTTACT ACAAACCATGATGATGTGTCAGGTTTGTGCTTGCGGTTCGCTTGTGAGAT TCTGAGTAACTCGATGCCTTGTTTGATCACTGTTACCCTCAGAGGTAATT GCTCTGAACCGCTTAATACAACTGTGAAAGTCAACTGTGAAGAAACTGTA TTTGGATTGAATCTGTTAAACAAAATAGTCAGTTTCTTAGCTGAGCCCCC TCTTTAA
Pep:
>DCAR_027609pep MFHQFGATADSLSKASTLVFRIGTDAHLYDDPDDVSIAPLLDSKFDSEKC EALKRLLALIAQGFDVSNYFPQVVKNVASQSLEVKKLVYLYLLHYAEKRP NEALLSINYFQKDLGDPNPLVRAWALRTMAGIRLHVVAPIVVVAVAKCAR DPSVYVRKCAANALPKLHDLRLEENTGGIEEIVGILLNDNSPSVVGAAAA AFASVCPNNLNLIGRHYKKLCETLPDVEEWGQIVLIEILLRYVIARQGLV RESIMASPYSEYLDSEIDGPDRDFAVKEETNVVSIGAYQSQLLQMASKSY LEGPEKYLSQMNFEDKGAFQSGLPKFTSAKNDDVKILLQCTSPLLWSHNS AVILAAAGLHWIMAPKEDLRRIVKPLLFILRSSSASAYVALCNIQVFAKA MPSLFASYSEDFFICSSDTYQIKALKLEILSNIATESSIPVIFQEFQDYV RDSDRRFAADTVAAIGLCAQRLPNVANTCLEGLLALTIPQSLNNDTESSG GDSIVLIQAIISIRSIIKLDPPRHEKDYVRDSDRRFAADTVAAIGLCAQR LPNVANTCLEGLLALTIPQSLNNDTESSGGDSIVLIQAIISIRSIIKLDP PRHEKVIVHLVRTLDSIKVPTARAMVIRMMGEYNSSGHILPKMLTSVLTY LACCFTKEALETKLQILYAAVKVVLCARGDDLCASKKLLSYVLELAKCDI NYDIRDRARVIRKLLTQYLFSFELVEEARYISESKNMSCLLAERLFLEKP KSMSTEPNNYRFYLPGSLSQIVLHAAPGYNPLPEPCSLTIGDSSFGSNIV KGGTHSDLYGVDDSERASGSSDDDSNSSDGSEISEAGSSGNDVGDESGSA SEGDENTGLLINFSDVGNAAYANLNGNSEVNDPQSRPNDFGELMSNRALE SWLDESPDSSRNAPESSSFQNSSARISVGSLSERVKPKSYTLLDTVNGNG LRVDYVFSSEMSSKSKFVCLEVSFKNCSNEPKEKILLFDEDIEGGQDNSE QALRTNESSSAPHNNDVKVIVPVEEIPCLEPGQSSKKIMEVHFHHHLLPI KLVLRCSGLKLPVKLWPDIGYFVKPLPMDDEEFFRKESQLRGMFEYNRRC TFIDHVRELKDEKGEISLVKDKFLVVCETLGLKMLSNANLSLISVDMPVT TNHDDVSGLCLRFACEILSNSMPCLITVTLRGNCSEPLNTTVKVNCEETV FGLNLLNKIVSFLAEPPL*