Resource Type:
Gene
Organism:
Name:
DCAR_027601
Identifier:
DCAR_027601.gene
Locus Tag:
DCAR_027601
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_027601, is a part of gene, DCAR_027601. |
| The genetic_marker, MK018871 8_21356104, is located in gene, DCAR_027601. |
| The genetic_marker, MK009815 8_21358264, is located in gene, DCAR_027601. |
| The genetic_marker, MK010968 8_21358270, is located in gene, DCAR_027601. |
| The genetic_marker, MK003317 K0761, is located in gene, DCAR_027601. |
| The genetic_marker, MK007911 TP6304, is located in gene, DCAR_027601. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_027601 | DCAR_027601.mRNA | mRNA | DCARv2_Chr8:21355789..21363040 |
Sequence:
GGGAAAGAGATAGAGAGATAGATTTGAGTATGTATCGAAGCGGTTCAGCT
CCGCCGACGGTCGAAGGATCGTTGAATGCTGTAGGTGGATTGTTGAGTGG
TGGCGGCAGTGGTGTTAGTGAGGAGGAAATTAGGTCTGATCCGGCTTACA
TTTCGTATTATTATGCGAATGTGAATATGAACCCTAGGTTGCCGCCGCCT
TTGTTGTCGAAAGAGGATGGGAGGTTTGCGCAGCGGATGCAGGGGGCTGG
GAGTTCAGCTGCTATAGGTGATAGGAGGAAGATTGGGAGGGAGGATGGTG
GTGATGGGAGTAGGTCGTTGTTTTCGGTGCAGATGGAGAAAGGACAGCAG
CAAGGGAGTAATGGAGAGTGGAGTGGTGATGGACTTATCGGATTGCCTGG
TTTGGGATTAGGTGGCCGGCAGAAGAGTATTGCTGAACTTATTCAGGTGA
ATTTAGTTGGTAGTAATGAATTCTTTTATTTGTGATTTGTTTCGTTATGT
TTATTTATGTTATACACTGTTATCGATTTGTAACGTTGCTGATTGTTTGC
GTGTTGGATTGAATTTATTACTAAGCAGTGTTGATGTATTTTGGATCTGT
CATACATTATGGTTTTGTTCTTCAGCAGGAAAGTGTGGACTGTTAAGTTC
ATCTTCCTTTAAGTTATTACTTACACATATAACATATGTATATATTATTT
TGATTGAGATTAAAAGGAATATTCTTTACTGCTACTAATGTGATCTTTTC
CTGATTTTCTTAAATAACCTGTTATAGATGTTTTTGATTCAAATGTTCAT
CATTGATGGTTGATCTTGTTTATTTTAATTGTTACTTGTTAGTTTGAATT
TAATACTTAGCTTTGTTCATACTTTCGCTACATATTGAGTATATCAAATC
CATGATATGTTATGTGCGAGTTTTGTTTGTGCTTAGCGGAATAGTGTGGT
TTTTTGAGTTCCTTTTCTCTCAATTACTACTTACTAGTTTCTTAATGTAA
CATTTTTTATGTAAAGGTATATTTGAGATTAAAAAAAATTAATTTTCCAT
GACCGAGTTTTTACAAATTCAGTACTAAGACTCTAACTGGTCGTACTACA
CAATTAATATATTACTATCTAATTATATTCATTGTCAGGTTGTGGATGTT
GCATAGATTTTGGGGCCTATAGGGTGGCTGTTTATATTGTTTTCTCCTAT
CCCTTTAGTTAAACATAAACTTTGAATCAGTTGGGATGATTTAGTTAATC
AGATATGGGACTAATTAAACTTCAGTCCAAAATTGTTTATCTGTTTTTGC
TGTAGAAACCATGGATTGAATTATTGTTTCTTGTAAATTCTGTTTGACAA
CTCCTCTTTCTACCACTCTCCATTTTTGTTATTTCATATTAAAAAGTTGT
TTGTCATATGCTTTTATGGGATGCTTTACTTCTCTTTTGTCTCTCCATAA
CATCTTTACTTTCACCACCCTTGAAATTAACATGCTCTTCCATTCACAAG
TTTAAAATCACTACAGTTTGCATATTATTATATACTTGAGGTTCCTTTAA
TCAAGAGGTTAAATCTTCATGCAGGATGATACTACTCATCAGACATCTGC
TTCGGGGCACCCTTCTCGTCCAACAAGCCGTAATGCTTTTGACAATGGTG
TTGAACCTTCTGAATCTCACTTTGCACAGTTTAAGCAGGACTTGGCTTCA
CTGGATGCTGTGCATGCTTCTGCAAACATTCAAGGCCTGTCTTCTACTCA
GAATGTTAATTCCTCGGTTTCACATACTTATGCTGCTGCATTAGGTGCTT
CCTTGTCAAGAAGTACGACTCCAGATCCGCAGCTTTTAGCTAGAGCTCCT
AGTCCTCGAATCCCTTCTGCTAGAGGAGGCAGAAGCTCTCTGGATTTACA
AAATGTTAATGGGTCAATTTCATTCAATGGTGCATCTGGGCGTGTGAGTC
AGCAAGCAGATCTGGTTGCTGCTTTGTCAGAAATAACTCTATCAAACAAC
CTTCTGGATGAAGAGAACCATGCCAGGTCTAGAATTCAGCAAGAGATCGA
TGACCATCAAAATTTATTCCATCTGCAGGGTGATCAGTACAATAATAAAC
AACATCCATACTTAAACAGGTCCGAACCTGGGCATTTGCAATCTATATCC
CAGTCAGGCAAAGGATCTTATGGCTATGGGGTAAGGGCGGAACTGAACAA
CTCTTCTTTATTATCTGATGTGCAAGTCAATCTTCACAAGCCTTCGCTGG
CATCTGCAAACTCTTACTTGAAAGGGCCATCCACACCAACACACAATAGT
GGAGGAAGTTCACCTTCTCAATATCGTAATGTTGGTAGTCCGAATTCATC
ATTTTTAAACTATGGTCTAAATGGGCACAACATCAATCCTGGATCGCCGT
CCATGCTTGGAAATCAGTTTGCAAGTGGAAGTTTGCCACCTTTGTTCGAA
AATGTTGCAGCTGCTACAGCTATGGGGGACTCCAGAAGAATGGGTGGCTT
GGCCCTGGGGCCCAATTTAATAGCTGCGGCAGCAGAGTTGCAGAACCTCA
GCAGAGCTGGAAATCAAAATGCATTGAATGGTCTTCAGGTTCCACTTGTA
GACCCATTATATCTTCAGTACTTGCAATCAAATGAGTTTGCTGCTGGCGA
GGGTTTGAATAATTACATGGATCTTGCTGGAATCCAGAAAGCCTACTTAG
GGGGTGTCCTTTCACCCCCCAAATCACAATATGGTCTTCCTTACCTCGGA
AGTCCATCCAGTCTGACTCATGGTTACTATGGTAACCAAGCATATGGACT
CGGAATGTCATATCCTGGCAGCCCATTAGGTGGCTCCCTTCTACCAAACT
CTCCCTTCGGACCAGGTAGTCCTATCAGACATGGCGACAGGAGCCTTCGC
TTTCCCTCAGGAATAAGAAACTTTGGTGGGGGTGTAATGGGACCGTGGCA
CCCCGAAGCTGGTGGTATGTTAGATGAAACTTTTGCATCCTCTCTCCTGG
ATGAGTTCAAGAACAACAAGGCTAGGTGTTTTGAGCTTTCGGAAATTGCC
GGGCATGTTGTGGAATTCAGGTATATCTCATTGTATGCTTTGAAGGTGAT
GCAATTGTATATATGTATATTTATGCTTTCTTCAGAGGGTCATTGGTTCT
TAAAATTGTCTGAGCAGTGCGGATCAGTATGGGAGTCGCTTCATACAACA
GAAACTTGAAACTGCCACAAGTGAGGAGAAGAACATGGTTTTTGATGAAA
TCACGCCACAAGCACTTTCACTGATGACTGATGTGTTTGGCAATTATGTC
ATTCAGAAGGTAACTTGCTTGCATAGTAATTTGCAAGTATTTTTTTTCTT
CGTTTAGTTAATTTTTTATGTTTCCTTAATAATGTACCTAAAACAATCAT
CATTAAGTTTCAGCCTTAGTTGCAATTTTCTCCTTTTTTGATCTAGTTTT
TCGAACATGGAACTGCAACACAAATAAGAGAACTGGCTGATCAACTCAAT
GGGCATGTTTTGAACCTCAGCCTTCAAATGTATGGTTGCCGAGTGATTCA
GAAGGTAAATATACTTTGCAACGTAATCAACATTGGTCTAATATATGTTT
CATTTTGGGACGTGGCTCTTGGGTTTCATATCATTATCTGCTAGCCTTTT
TCATACACTAAATACAGCAGAATGCATAGGAATTCAGATACATAGCATAT
GGTGATAATCCTGAGAGGAATTTCATCCTCTCTAATATTTAGTGGATTGG
TTTTATGTATTTCATTGAAAATATTACAAAACTATATCTCAACTGCAGAC
TATATTATTTACTTGCTAAGCTTCTAAGATTTATGAGCTTAGTAGAAAGG
GGTGACTTTTAATATACTTTTAGGAGGTCTTTGCAGAAGGAAACTAACCA
GTTAACTTCTATGTCAAAGATATGTAATCTATAAGCAGAGATATAACTAT
ATCTACCACTTGCAATAGTTGGATTATCATCACTCATGTCGAAGGTTCTG
AATACTGTTTTTTGTGAAAAATGTTCACTATGCTTAAACTTTTGTTTTGG
TTTTAATTTGTCAATAGTTTTTCTGCTATGTGTGTAACCTTGCTGTATTT
ATCCAGGCCATTGAAGTTGTTGATCTGGACCAGCAAACTAAAATGGTTGC
AGAACTTGATGGCCACATCATGCGCTGTGTACGAGATCAGAATGGAAATC
ATGTTATTCAGAAATGTATTGAATGCATCCCTGAAGATGCAATTCAGTTT
ATCATTTCTATATTTTATGATCAAGTGGTGACATTGTCCACCCATCCTTA
TGGTTGCCGTGTAATACAGGTATTTAAGCAAAACTTATCATAGCCACCTT
TTTCATCAACTTTGAAATGCTTGAAACATGCAAATATGTGTATAAGTGTA
TTTGACTGTGTATATGTTTATTTTCATGTGACAGAGGGTTCTGGAGCATT
GCAGTGACCCAAAAACTCAACAGGTAGTGATGGACGAAATTATGCGGTCT
GTCTGCATGCTGGCTCAAGATCAGTATGGAAATTACGTTGTTCAGGTTTG
TAAGCTTTTCAATAAACATTCCTTTTTCTTTCAGTTATTATTATTATTAA
TATATTTCTAAATGATATTGTAATCTTCGTATTTTAAATTTCAAATTGGC
TATATGGAGTTCTTTTAAGAAAGAAAGTATGAGTATGCAAATTCTTGTTC
ACTCTACTAGATGCTAGCATATTTAGTCAACTTCTTCCAGCTCTTGTTTT
TGTGGTGCATATGCAAACCACTCGAATTAGTTTTATTGCTGCAAAATATG
TACAGTAATATTTACAAAGCAGTATTCTACTACAATGATTCTATTGACTA
AAAAGTACCGTAGTTAGTCTTATGTTCCTCCCTTTACTTCTTGTGATTGC
CCTTTAAACTAGGTATCTGGATTTGTGTTGTCTGCACATTCTACTTTAGT
ATTTCGGTTGTTGGCAATGTTTTATTAGATTTGTTTATCCATGGAACTTG
CAGTATTTCCGTAGTTAGTCTTATGGAGCACCTTTCCTTGTTGATGGTTT
TCTATTTTGCAGCGTATGGTTAGTGATGTATATTTGTTTCTCAAAGTAGT
GAGTCATAAGATTTCTTTGTCCCAAGTCACGTATGCTTCTGGTTCAATAC
TATACTGGCGTTTAGCAGCTTGATTGTTCATCTTTGGCTGCTACGACATG
CATGCAAGATATTACCACTGTATTGCATTGTTTTTGTTTCAATTTGTTTG
TCATAAAGCTGTGGTGCAACCTCGTCTGTATGCTGACTAGTCTTTGTGAT
TCCCTTGGCAGCATGTGCTGGAGCATGGGAAGCCTCATGAACGTACTTGT
ATAATTAATAAATTGATAGGCCAGATAGTTCAGATGAGCCAGCAGAAATT
TGCTTCCAATGTTGTGGAAAAGTGTTTGACTTTTGGTACTCCAGAAGAGC
GCCAATCCCTAGTTGACGAGATGCTGGGAACCACTGATGAAAATGAGCCT
CTCCAGGTTCGATCAGTTTCTCATTTCACTTATATAGTTAAAGAAGCTCA
ATCTAAGACTCGTTTTTTAATCTAGTACACGTAACATTCCTATTTCCTGG
TGATCCTTTTCTACCTCTGGAATTTTCTTTGACTTGGAATAACATATCTA
CAGACTACAGTAATTGAGTTAATCTACCAGTTTCTGAATTTTTTCGCATG
TACTGTAAAGCATCTTTTTTGTGCTTCTGTTGTCGTGGTATATTCCTGGT
TTATTGTGTCATTGAACTTGATTTTGCAACATTTATAGAAATGTAGCGAC
ATGCAATTAATTAAAGGAGTTTTTTTTTCGGGACAAACCAATCAACTAAA
GGAGTTGCTCTGCATTTTTGTTCTTTTTACGTCAGTGCGAGGCAATATTC
TACCGGCTCACCAAGTGAAGTTTATAAAATTTATTGGAACCTGTATCACT
CTAGCTGATGATTTATGTATAGTGCACTAGAGAGAAGTTGGTTTTTTGTT
GGGTCACTTGGATGCTCCTTTTTCACATGATGTGCAAGTATATCTGTATG
AAGTGTAAATTAATGGTGTTTACAATTTAAGGAACACTATAAAAGTCATA
GGTGTCCTGGAAACGACTGTAAAGTGTATTGTTCGTATATTATGACATTT
AGAATCAAGCTTATTCATAATTTCGTACTAGGAACCCCAGTTTGGGGTTT
GCACTGAGTGTCATGCTTTCCCTTATCACAAGTCCATACAGGAGAAATAA
TTAATCACATTTACAGAACGAAAAGTGTATCATTTGTATATTATGACATT
TAGAATTAAGCTTATTCATTCTAGGAAACCCAGTTTGGAGTTTGCTAAAC
ACCTTAGCACTGAGTGTCTTGCACTCGTGCTTTCCCTTATCGCCAGTCCA
TACAGGAGCAATAAAATAATCCATCACATCTACAAACTAAAAATAAGGAT
GGCACTATTCTCTGAATCATATATACATAAATAACTACAGGTAATGTTTT
TGTTTGAAGTAGAGCTATAGTATTGGCAAGCTCTCTCATAGCTCCTGTTA
TATAATGACTTTAGTTATATATCTGAGATCTAATTATGTTTGCCATTTCT
GACTTCAGGCAATGATGAAAGATCAGTTTGCAAACTACGTTGTACAGAAA
GTGCTGGAGACTTGTGATGACCAGCAGCTTGAGCTTATACTTAACCGTAT
TAAGGTTCATCTTAATGCACTGAAAAAATATACATACGGAAAACATATAG
TTGCGCGTGTAGAGAAACTCGTTGCTGCTGGAGGTATTTTAAATATCCCT
TGATCCTACTTTTACTTTTTATACGTTTTTCTATGAGTTGGTCTTAATGA
GCTGAAATTATTCAACTTGTCATATATAACAAAAATGTAAACTGTGCCTC
GTATCTTGATCTTGTGTTAATAATTGCTTATAATCTGTATATACAGAATT
GTATAATTTTACAAAGTTATGAAATTTGATATAATTATCTCCCACTTATT
TACAATTTGTCATGCATAATGGTTGTATAACAATATTTTGATGGCTGAAT
TGTGAGTGGTTTATTGCATCATCAATAGAGTACAAAGAAATTTTTAGGGG
TGATTATTATCCAGAATTTCTTGTTGTTGGTAAACTTGAGTCGGTTATGT
ATTTTACCCTTTCATATCTACTGCAAGACTTTTGACCCGTTTTAAAATTT
AAAATCTTGCAGAAAGGAGAATTGGCGTGCTGGCTTCATATTCTGCTGCT
GCCGCCGCAGCCGCCGCAGCCGCTACCTAGCCTACAAAGAAGCTGTACAG
CTAACTTGGTTTAATATAATTGCCTTTCTAGTCTATGTTTTCACGTTTAG
CTGTGTATTGGCTCAATTTATCTGTTTATTAAGATAAATAAGAGCCAGTT
GCAAATAAAATCTGTTCTTTGTAAAATGTACATTGTTAGTTTTGAGGATA
TACCTAGAATCAGGGTGGCTTAGCTGAGGCTAAGATGGTGAAACACACCC
AATGCCCCTGCAGAGGAGATTTAAAAAAGGGTCACTGTACACAGTGGTGT
AAGAAAGTGGGAGAAAGATGTAGAAGTTTGTCATCGTGACTGTACAAATG
TTGTTGGGTGCATAGCATAGCCTTTGATGTTTAGAAGTGGCCAGAATTTT
TCCTTAATATATGTATGAATTTGTTTAAGTTTCCCTTAATTATAGAACCT
TTTCCGGTTTTCCCTGAATGCCTTGATATTTCTGGCAATTGCCTGCTTGG
TTGATTTACTGTCTATGGTTTGTTTCAGAGCTTGTGTTTTATTTCAAATT
TTGGAACTGAATTCCAAATTCCATCATTACAAGCAGCCTTAAGTTGTTTT
TGTTTGTCGTTTTTAAAGTTGCTCATGTCGGTGGAAAAGAAAGTTTCTTA
CAAAATGATGGAAAGGGACTAATTTTAGGCAGCAGACTTGATATAATTCA
AATTCTGGAGTACTACTCTATGATATACAACTGTTTTCCTGAATCCAAGA
TTCATAAAAGAGATGCGCGGCATAATTTTCACAGATGACTCAGATTCAAA
ATCGAGTCGACTCGAATTCTTCGCAAGCGACTCGAACTCGGCTCGAATAG
GGGATATTTGTTTATTTTAACGATCAAACTCTACTCGTTATTTATGATTT
TTGACGAACTCAAGTTTGAACAATAAGAATTATTTGTTTCTTTTAACTAT
CAAACTCGACTCGTTTTTACTTCAACACGATTCAATTATGATTTTAGAAA
TAAATAAATAAAATGTCTCCCAATATCATTTAGTAACACCTGATAATTTA
CCGTTTTTAATTTGGGAATAAAACGCTAGATCGTGCAACGTTTGGTAATT
TAACCCCAACAAAACGCTACACGAAGGAGCGTTCTGTTAGGATTTACCTA
ACGCTAGACGATATAGCGTCACAAAACGCTAGACGATGTAGCGTTTTATA
TGATTATCTAAAACACACGATGTAGTATTAATAACGGATATCTTGGATGA
TTTTTTCAGATACAGAGAGGGAAAAACATTGGCCCTGTTTGTTTCCGAGA
AGCAGAAGCAGCTTCTGACTTTTGCTTCTCTTAAACCGTTTGTGTAAATA
AGTAGAATCACTTTTAAGAAACTGAGAATGCTAGCTTTTCTCCCGGAGCT
TCTGTTTTTTTTCCAAACACTTTATTAACTTATTTACTTTTAACTTTTAA
TCTGCCTCTATAATTTAAGTAATGAATCACTTTTTTTAAGTTTCCCCAAA
CAGCTCCATTGTTTAACTAAAGAGGACCTTTAATCCTTCATGTATCATCG
GATGAATCTTCACAAATCAAAAGTAACATAAACCCTATACCACATTTCTA
ATTGCTACTGATCTGCAATGGCTGCTACCTCCTCGCTGAAGAAAATGTGG
GCTTCTTCAACCCTCCTCGCTAAAACCCAATTCGCTTCTTCGCTAGCTGC
CGCCTCTCCCTCTACACTCTTTACCACCAGCAATCTCTCCCCCATTCGCC
GCGCCTTTCCTCTCTCAGGTTGTCATCTACCTCTCTCTCTCTCTCAGTCT
CTCTTCCTTCCTCTCCCTCTCTCTGTATTTTCATCTTCAGTTTGGTGCTA
ATTATTCCTATACATATATTTTTCACTCTTCAAGGTATTGAAATTACATT
TAGATTTAATCTGATTTGTGCTCTTTTCATTTGATTGATTGAAAAAGATG
TGTTTGATCTGATTTCTGCGCCGACCAAGATCCGCCTTGCATCACCATTG
TTCAATGGAATTGGTTCCAGTGTCAGGCCTGGCTGGGAGGCGGATCGTAT
TCGTAGCTATAGTACTTTGAATGGACTCGGCAATCAGGATATGATTCGAC
TCGCCAAAGAGGAGGATGTTAAGGTTCCGGTTAAAAAGAAGAGTTTCACC
AAAATATGCATGGTTATTAAAACTTTTGACAACAAAAATGCGGAGGAACA
AACTTATCCAGCTCACCAGAATAAAATTAGATTGCCAACAAAACGATCCC
TGTTTACTGTTTTGCGATCGCCTCATGTTGATAAGAAGTCAAGAGAACAA
TTTTTTTTGACAACAAAGAAACAGCATCTGGTCATACAAGCGGAAAGGCA
TGAATTGGCCAAGAAGTACTTTTGGTTGAAGCGCCACCGTATAATGGGAG
CTCAATTTGAAGTCAAGTTTTTTTGCAAGACCCGTTTTCAACTTGCAAGG
GAAAGAGATGGGTTAAGTGATAGCAGGGAGAGCGAACCTGCTCCAGCCCT
AGCTTCTATTTGAAATTGAAAGTGTTGGGACTTAGGAGATATGACTGTCG
GATGAATTTGCTGGAGAAGTAGTATAAACTTGATGCACTTAAGGCGGGAG
TGTTGCAGGTTGCGGTTCCTGAGTTGTATGCATGCCGCTTTTAATTTTTG
TTGCTAGTTTATTGCTGTCTCCCTACAATTTCTAATGGTGGTTTGTCAAC
CTTTGTGTTGTTGTTGGTGTTTACTTTTCAGAGTCGCTTTCCTGTGAACA
CAATTTTACTTGGCAAAAAAGAAGAAAAGAGGACTGATGTTTTCCATGTT
TCTATTGATTTTATATATAATTTTCTAATGTAGTTGGTCTCGGAGCAGTA
GTGATTGTGATTTTAAGTTTTAACTGGTGAAATGCAATTGAATCCTTTGA
AATGGTGAAAATGTTGATATAGATGTTACTATGTGAGTTTATTTGTGAGT
TCAAATCTTGTTACTTATAATCAATGTTGTGTATACTTTATGGTTCTTTT
ATCTTCTCTAGTCGGTTCATAGAATTCTGATGAGAAAAGCAGATTTTATA
GATTGTCGATGGATGATACTTGTTTGATTTTAAGTCCATGGGCCATGGCA
TAGAAGTGACTTACTAGAAGTAAAAGTGCTCTTTGATGAGAACATTCTAT
GTCATTTATGAATGTTGTGAATATACTGATTTTGTTGATGATACTAACTA
GTATTACATATGTTTGAGTTCATGATCCTCTTGTCATCTCACATTACCTG
TTTGAAGAGATTTGGCGGGCTCCTATTCCTTGATTGTAGCCTCTTGGGTG
AGTATCTATGTAAATTATAATATTTGATGACTGATTTAATCTTTTTTGAT
CTTTCCACCCTTCACTTTTATGTTATACACTACTTAATATGCCATTCACT
TTACCGTGTATTCTATGTATATTGAGTATACTTTATACTAGCTATTGCTA
TAAAAACATTAAATAGAATAATTGAAGCAAATGCTTCCAGAAATGCATAA
ACTACTATCGATAAAACTATCTAATTCGTTAATTTTGAGGTCCAATGTCT
GTTCTTACAACATTTAGGAAGTTTATATATGCGTATCCATAACAGCGAAC
ATGTCAGAAGCTATTGGTTCTGAATGTTAAACCAGTGAAACGTCATCAGT
TCAAATTATATGCTTGCAGTTTCCCCCAGCTTTTTACATATGAAACTTTA
TTATCTGCAAATATAACTGAGATATATGTATGACTCAATTTTCGTTTTCT
AGTCTAACGTCAGCCACCATATCTGTTATTGCAATAACTAAAAGAATAAA
ATCAGGAAAAAAAGAAAAAGAAGAAGAGATATGCATGTTAAAAGAGAGTA
CTACTGCATAATTTATAAAAGTACAGCCGCCGAGGGAGACCTCGAAATGT
AGAGAAAACACACATTGAAAATGACTGTACTAGTGCATTTTCCTACTCTT
TTCAAAGTTGTTTATTCAAACTTTTCCCTGGCTGGCGGGCTGGCGGGCGC
TTTAAGCTTCACCACACTTCTATCTACGAACATGTTCATATCAGATATCC
CTATAAATGTACATGCGAGGTGTTCTAAGGAAATACAGAGCAACTTCAAC
TAAACACACAACAAAAACCAAGAGTGAGGGAACAATGGGTGCAGGTGGGC
GAATGTCGGATCCTCCTACAGCCAAAAAAACTGAAACAGAAGCACTTCGA
CGCGCTCCTCATGAGAAACCTCCTTTTACCATTGGTGACCTCAAGAAAGC
CATTCCTGCCCATTGCTTTGAAAAATCACTCATAACTTCTTTTCGTTACC
TCATTCAAGATCTCCTCATGGCCTATGCCCTCTACTTTGTTGCTACTAAT
TACATTGACCAGTATCTTCCCCATCCAATCAACTACTTGGGTTGGGCTGC
TTACATTGCTGTCCAGGGGTGTGTCTTGACGGGAGCTTGGGTTGTAGGCC
ATGAATGTGATCATGACGCCTTTAGCGATTATGGTTGGGTGAACGACCTT
GTTGGCCTTATTGTCCACTCTTCTCTCATGGTCCCTTATTTCTCTTGGAA
AATTAGCCACAGACGTCACCACGCCAACACCCAGTCGCTTGAGAATGATG
AAGTTTATGTTCCCAGATTCAAGTCCAACATCAGGAACTACTACAAAATT
CTCAACAACCCACCCGGTCGTGTACTTGTCTGGGTTACCACACTTCTCAT
AGGTTTCCCTTTATATTTGATGTTTAATGTTTCTGGACACAAGTATGAGA
GGTGGACTTCCCACTATGATCCCCATAGCCCACTTTACACAGAACGTGAG
CGCAAGCAGATCATTGTGTCTGATCTTGCCATTCTTGCTGTTATCTATGG
GCTGTACAATCTAGTATTAGCCAAAGGATTTGTCTGGGTTTTCTGTGTTT
ATGGAGGTCCATTGCTCGTTGTCAACGGATGGTTCACATTGATCACCATC
CTCAACCACACTCATCCCTCTGTGCCTTACTATGATTCAACCGAATTACT
CCCTCCGTTTCTTTTTTCTTTTCTTGTTTATGATGTCGGTACTGTTCATA
ACATGAGACAAATTACTAATTTACATCTAATCTATAAAACTAAATATAGT
CATGAGTGATCTTGTTAGATTCGTATTCACGAGTACTTTAATACGGTGAA
ATTTTTATATTTAATGCTACTACGAAATGAAAGATATTAACGATCAAAAA
TGTGTGTTGGCAAACGTGAAAAGTACAAACAGGAAAAGTATTTAGGGACG
GAGGGAGTACTGAATATCCAATCAACTTTTGTCATCTAAGCATTAAAGAA
CGAATTTTGGAACGTGGTCCCTAGCATTTCTCGTATGGATTTGTTTAAGA
TTCCCTTAGATATAGAACCTTTTCCCTGAATTTATTAACTTTTGAAGTGA
TAAAAATTGGAATTTGGTCATCATTCTCTTCTCTTGAAATTCGATTAATC
ACTCCCTCTCTTCCTTTCTCTATCACTGCCTACTCAACAGTTCCGAAATT
CTTGACAGTCATTCCAATTAAGTTTTTGCTCATCTGAGACATCATTGCAT
TGTCTATATCCTTGAAAGTCATTAACTTCCATGGAATACATCTTCTTCTC
TGCTAGGAGAAGTGTGAAAAATTCTGCTACAACAGCTTTCATTCTGTGCA
AAACCTTATCTGACATCCTATGATCTGTTACCTGATAAACACAATTTTGT
TTTTTGTTATATTTTTTTAAAAGCACACACATATAAAGAATCATACCTGA
AAAAGTCCCCACTCCTTGCAAGCAAAATCAAGAATTCTCCTTTGGCTTTC
ATCTCAATTTGCAAGCTTTGACAAATTTATGACAGGGATTCGTCTGAAAC
TTGACTGGTCTCGATGTGCAAAGGTCTGTCCTCGAGTTTCTTTATGTACC
TTTCGGGAACACTCTGAGAATCATTTCTTGCTAGTTCTTGAACACTTGGT
ACTGATCAAGAACTTCCCAAACCTGACCCTTCACTGTCCTCCACAATCTT
ACTTTTAGCCTCTGAACTCATTTCAAGTTGTAGCTTTGCTTACCAGTGAT
GATACTCTTCTTTGATATACCCATTAAAAGCAGTTCAAATATTGCTTTTG
TTTGACATGTCAAGTTTGCAATTACAAAATCAGCTAGTCATCAAATATTG
TAGTGTACTTCTCATTTGACGCTAAAAAAACAAATCAGACAAACATATCC
GGTATATCCAACTTGAAAGCAACAAAAATTACTACAAAACATCTGAAATC
AAATTACAATAGATATTTTTAACAATCTCAGTGACATGTTTACATCACTT
AGGAGGACAAAATGTAATAACATACCGGGAAGCCCTACAAGTCTTGAGCG
CAGAGGAATCATCAAAAGCATAACTATAAGCCCTAGGGCACATGGCTTTG
AACAGATGACCAAAAACACTAGGCTTACAAATTTTCGGATTAGCAAACTC
CCCTGTACAGCAATACCTATCTGATCTTGCAGCCATGCAAGCACTCTTAC
AAGCCACCACTTTCCCATCCTTCTTCACCACCAAATTCGAAGGACAGAAC
ACATTCAAGTCCTTTGCGCATGACACCATGTCACAGCCTGCACCACCTTC
CGGTCTCATTGCCACTGGAACATTAAATCCATCAACCAACGACACGTCGT
AGTAATGCAAAGCGGATTCACAGGTTCCAAATGTCATTTCCACCAGAGTT
GTTGGTGGAGTTCCTCCTGTTCCATTGCAATGCAGAAAACCTCCACAATC
TCCTGACTCACAGTAGCCTCTACCCGAGTTGTTGTCGAAGCAACAGCCTT
GTCTAGCCCATATTCTCCCTGACCATCTTTCGGGGACATCAATTAGTACT
TTCTCGGTGCTGTAGAGGCGGAAACCTCCATGGCTAGGCGTCTGGTGGCC
CGTTGTCGCGAGGATTCCAGGCCATATGGTGTCCTTGCAGTTGTTTAGTA
TCTTGAGTTGAATCCCATCTGTAAAAACACATCAATAAGTAGTTACATTG
CAAGCAAATCTTATCAAATAGCATTAAAAGAAGCGGAATAGAGATTGAAC
TTACTAGTAAAACAGAGAGTTATGAAGAAGAAGCAGAGGAAGAAAAGAGT
GGAGGGAGACATTGTTGAGGACATGAAGAAAGTGCAGACAGAGATAATGA
CTTGGTGGTGGTTTTATAACTGCTCAATGCTCGTCACTGCATGACACCAT
GACTCCAGGAGTAGCGGTTTAAGAAATGGTGCATGCTATGCCTTTTTACG
AATATAACCATATAAAATATTAATAAAATTATATGGTATACTGTGTACAC
ATTTAAATGTGGGGTATTGGATTCACATATTTCAAAGTTAAATAAAATAT
AATTTAATGGTTACAATTTAATTTTTTGATAACATTTTTTAAACATGTGA
CAAT
Sequence Length:
14654
Sequence Checksum:
7f0a4f61b24862e39e8681b8acbd64f3
View location in JBrowse:
Cds:
>DCAR_027601cds ATGTATCGAAGCGGTTCAGCTCCGCCGACGGTCGAAGGATCGTTGAATGC TGTAGGTGGATTGTTGAGTGGTGGCGGCAGTGGTGTTAGTGAGGAGGAAA TTAGGTCTGATCCGGCTTACATTTCGTATTATTATGCGAATGTGAATATG AACCCTAGGTTGCCGCCGCCTTTGTTGTCGAAAGAGGATGGGAGGTTTGC GCAGCGGATGCAGGGGGCTGGGAGTTCAGCTGCTATAGGTGATAGGAGGA AGATTGGGAGGGAGGATGGTGGTGATGGGAGTAGGTCGTTGTTTTCGGTG CAGATGGAGAAAGGACAGCAGCAAGGGAGTAATGGAGAGTGGAGTGGTGA TGGACTTATCGGATTGCCTGGTTTGGGATTAGGTGGCCGGCAGAAGAGTA TTGCTGAACTTATTCAGGATGATACTACTCATCAGACATCTGCTTCGGGG CACCCTTCTCGTCCAACAAGCCGTAATGCTTTTGACAATGGTGTTGAACC TTCTGAATCTCACTTTGCACAGTTTAAGCAGGACTTGGCTTCACTGGATG CTGTGCATGCTTCTGCAAACATTCAAGGCCTGTCTTCTACTCAGAATGTT AATTCCTCGGTTTCACATACTTATGCTGCTGCATTAGGTGCTTCCTTGTC AAGAAGTACGACTCCAGATCCGCAGCTTTTAGCTAGAGCTCCTAGTCCTC GAATCCCTTCTGCTAGAGGAGGCAGAAGCTCTCTGGATTTACAAAATGTT AATGGGTCAATTTCATTCAATGGTGCATCTGGGCGTGTGAGTCAGCAAGC AGATCTGGTTGCTGCTTTGTCAGAAATAACTCTATCAAACAACCTTCTGG ATGAAGAGAACCATGCCAGGTCTAGAATTCAGCAAGAGATCGATGACCAT CAAAATTTATTCCATCTGCAGGGTGATCAGTACAATAATAAACAACATCC ATACTTAAACAGGTCCGAACCTGGGCATTTGCAATCTATATCCCAGTCAG GCAAAGGATCTTATGGCTATGGGGTAAGGGCGGAACTGAACAACTCTTCT TTATTATCTGATGTGCAAGTCAATCTTCACAAGCCTTCGCTGGCATCTGC AAACTCTTACTTGAAAGGGCCATCCACACCAACACACAATAGTGGAGGAA GTTCACCTTCTCAATATCGTAATGTTGGTAGTCCGAATTCATCATTTTTA AACTATGGTCTAAATGGGCACAACATCAATCCTGGATCGCCGTCCATGCT TGGAAATCAGTTTGCAAGTGGAAGTTTGCCACCTTTGTTCGAAAATGTTG CAGCTGCTACAGCTATGGGGGACTCCAGAAGAATGGGTGGCTTGGCCCTG GGGCCCAATTTAATAGCTGCGGCAGCAGAGTTGCAGAACCTCAGCAGAGC TGGAAATCAAAATGCATTGAATGGTCTTCAGGTTCCACTTGTAGACCCAT TATATCTTCAGTACTTGCAATCAAATGAGTTTGCTGCTGGCGAGGGTTTG AATAATTACATGGATCTTGCTGGAATCCAGAAAGCCTACTTAGGGGGTGT CCTTTCACCCCCCAAATCACAATATGGTCTTCCTTACCTCGGAAGTCCAT CCAGTCTGACTCATGGTTACTATGGTAACCAAGCATATGGACTCGGAATG TCATATCCTGGCAGCCCATTAGGTGGCTCCCTTCTACCAAACTCTCCCTT CGGACCAGGTAGTCCTATCAGACATGGCGACAGGAGCCTTCGCTTTCCCT CAGGAATAAGAAACTTTGGTGGGGGTGTAATGGGACCGTGGCACCCCGAA GCTGGTGGTATGTTAGATGAAACTTTTGCATCCTCTCTCCTGGATGAGTT CAAGAACAACAAGGCTAGGTGTTTTGAGCTTTCGGAAATTGCCGGGCATG TTGTGGAATTCAGTGCGGATCAGTATGGGAGTCGCTTCATACAACAGAAA CTTGAAACTGCCACAAGTGAGGAGAAGAACATGGTTTTTGATGAAATCAC GCCACAAGCACTTTCACTGATGACTGATGTGTTTGGCAATTATGTCATTC AGAAGTTTTTCGAACATGGAACTGCAACACAAATAAGAGAACTGGCTGAT CAACTCAATGGGCATGTTTTGAACCTCAGCCTTCAAATGTATGGTTGCCG AGTGATTCAGAAGGCCATTGAAGTTGTTGATCTGGACCAGCAAACTAAAA TGGTTGCAGAACTTGATGGCCACATCATGCGCTGTGTACGAGATCAGAAT GGAAATCATGTTATTCAGAAATGTATTGAATGCATCCCTGAAGATGCAAT TCAGTTTATCATTTCTATATTTTATGATCAAGTGGTGACATTGTCCACCC ATCCTTATGGTTGCCGTGTAATACAGAGGGTTCTGGAGCATTGCAGTGAC CCAAAAACTCAACAGGTAGTGATGGACGAAATTATGCGGTCTGTCTGCAT GCTGGCTCAAGATCAGTATGGAAATTACGTTGTTCAGCATGTGCTGGAGC ATGGGAAGCCTCATGAACGTACTTGTATAATTAATAAATTGATAGGCCAG ATAGTTCAGATGAGCCAGCAGAAATTTGCTTCCAATGTTGTGGAAAAGTG TTTGACTTTTGGTACTCCAGAAGAGCGCCAATCCCTAGTTGACGAGATGC TGGGAACCACTGATGAAAATGAGCCTCTCCAGGCAATGATGAAAGATCAG TTTGCAAACTACGTTGTACAGAAAGTGCTGGAGACTTGTGATGACCAGCA GCTTGAGCTTATACTTAACCGTATTAAGGTTCATCTTAATGCACTGAAAA AATATACATACGGAAAACATATAGTTGCGCGTGTAGAGAAACTCGTTGCT GCTGGAGAAAGGAGAATTGGCGTGCTGGCTTCATATTCTGCTGCTGCCGC CGCAGCCGCCGCAGCCGCTACCTAG
Pep:
>DCAR_027601pep MYRSGSAPPTVEGSLNAVGGLLSGGGSGVSEEEIRSDPAYISYYYANVNM NPRLPPPLLSKEDGRFAQRMQGAGSSAAIGDRRKIGREDGGDGSRSLFSV QMEKGQQQGSNGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASG HPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNV NSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGRSSLDLQNV NGSISFNGASGRVSQQADLVAALSEITLSNNLLDEENHARSRIQQEIDDH QNLFHLQGDQYNNKQHPYLNRSEPGHLQSISQSGKGSYGYGVRAELNNSS LLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFL NYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMGDSRRMGGLAL GPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAGEGL NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGM SYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPE AGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQK LETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELAD QLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQN GNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSD PKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQ IVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQ FANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVA AGERRIGVLASYSAAAAAAAAAAT*