Resource Type:
Gene
Organism:
Name:
DCAR_027478
Identifier:
DCAR_027478.gene
Locus Tag:
DCAR_027478
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_027478, is a part of gene, DCAR_027478. |
| The genetic_marker, MK010975 8_22747221, is located in gene, DCAR_027478. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_027478 | DCAR_027478.mRNA | mRNA | DCARv2_Chr8:22731753..22747755 |
Sequence:
ATGGTGCGATTAATTATATTACTAGCACACCAGGTTAAATTTGGGGAGCA
CATTGCGATTCTTGGTTCAGCTAAAGAATTTGGGGCCTGGAAGGAGAAGA
AAAACATGAACTGGACGAAAGATGGATGGGTTTCTGAGTTTGAGCTTGAA
GGGGGTGAGTCTGTTGAGTTTAAATTTGTGATCGGGAAAGGGGGTGATCA
CATGGTTTGGGAAGGGGGTGATAACAGAGTGTTAAAGTTGCCAAAACAAG
GGAGTTTTGAGATGGTATGTCGATGGAACAGGACCAATGAGGCTATGAAC
CTAGTTCCCTTGGGTTCAGAACTGGTTGAGGAAGAACAGGGGAATGTACA
TCACAGGGTGTCTCCAGACGTGGATAAGGTGACTAGTTCTTTTGTGGACC
AATGGCAAGGGGAAGCTGCATCTTTCATGCGATCAAATGATCACGGAAAC
AGAGAAAAAGAAAGAAAGTGGGATACATCGGGGCTTAAAGGGATTGCTTT
AAACTTGGTGAAGGGTGATCAGAATGCCCGAAATTGGTGGCAAAAGGTCT
GAGTACTAACTTTGTAATATTTCTTCCCTCTTACTCCCTTCAGAGTTGTG
CTATCAACTAGGGCAGGTGAATAGCATGTGTAAATAGCCCCATAGGGCCT
CAAAATATGAAGGGGCACCCAATTTTCAAGCACATAACATTTATACATAT
GCAACTACTTTATTCTTTTATTGTATGTTAGATTAAAATCCCTAATATAT
ATTTTTTTCCTTACTCTTTGTTGTATGTTGATAAAAATCCCCAACTTATA
TTTTTTTCTTTGCAGTTGGCCGGTTGCAATTAATATTATCATTAGATGTA
AATTGATACTATATTCTTGTAATAGTGCTTTATTTTGAATTTAATTATTA
TTTGTTAAATTATTTTTTGAGCCTTTTGTATCAATTTGATAGTTATTCTT
AGTGGATAATTAATATATAATTTTTATTTCTTATCACAAATTATATATTA
TAAATTTGTACTTTTTTCCTATGTTATATATATTAATATATTTTAAGTTA
ATAGTTTTATACTAAAAAAATTAATAATTTAGTTTTGCACAGGGCCTCCT
AGAGCCGGGCCTGCTATCAACATAATTAGTTATAATATTTCCATATGAAT
TTTTGCTTCTGCAAGATGAGCATCTCTACATAGTTTTTTTTGTGCATCAT
CCTTTCATGCTGTTGTGTAATTCTGTAAGCTTCTTTCCATGTTAAATGTG
GTTAACTGGTTATAGAATAAGCTAAATTTCACAGAGTCCATTCAGCTAGC
TTTTATTTATTCATACTTCCTTAAACTGATTAACTGTAGTACATATTGTA
CATTATAATACTATGCCAATTTCATGATTAATGGGACTGCAATATTGGAG
ACATTGTTAGAATATACATGCAGGGTTTTATTAGAGAGCGGTGAATTTTA
TAGGACAATGGTCTGCGAGAGACGCTAATTGGGGGGCTTGAGAATCCTCC
TGTTGATGATAATTGCTACATTGCTGATATGTGATATCTTTTAGAAGTAG
ACGCGTGTGTGAAAATTAATTATATATGTAAGGTTTCTTTATGCAAACTA
AGGATAGCCTTACACCATGCCCAGTGGTGGTGCTATATCTATAATACAGC
ACACAAAAAAACTTCACTTAATACAATGCTAAACACGGATGCAAATAGCA
AAATGTTATACTTGGTGCTAAATGTAGAATAAACCAAGTATAGGTGTTGA
TATAATCGTCACATAGGCATGCGAGCAGAAAGTTGTGGGAAATGAATAAT
TAAAGTAATGGTGACAAATATAATTGTACATTTGAAGGTTAAGTGGTTGA
AATATATCTAAACTTAGACCTGTTTGATGTCACTTCAAAACCATGCATTG
GCTCACTAGTTCAATTTTAAGATCAAAAAACACTTTCTGATTTCATCGTA
TAACAATAGCTATATGTATTTTAGCACTACCATTGGACATGCTCTGATAT
GAGGGGTGGCATCTGATGCTGGTCTGAGTTTAACTTTGTTAAATAGTTTC
ACAAGAAGCCTAATGAAGTTCCAGTTTGACTGGAAAACAGATATTCCGAA
TAATATACACTATTATGTTGTGTTTGGTTGGAAAGATTGGAATGGAATGG
AATGAATAAAAATTAAAGAATATGTAAGAGACAGGAGGAAAGTTTTGGAA
AAACAGTGAACGAGTGCAAAATTTATATGATGAGACTTGAGAAGAAATTT
GGTATAGGAGAGAATGAAGCATTCTTTCTCAATTGGGTGTGACACTTCTA
GTGGGGTGTAAGGACTGTAATAAGGGAAGGAATCAAATTCTTGAACAATT
GTCCATAACATAGTTCAAATTTAATTAAACTCCTTCCGAATTCGTTCACC
CCAACCAAACACAATATTATTATTATGACATGTGAGAGGGTTTGTTAGAT
TATTATTTGTAAAGGTTGAGATATGATTGTAGTATATTCCAGCTGTTTTG
CAAAACACCACACTTCGCATTTCTCCGCTCATCCACTTTTGTCATAAGCC
CGTCGGTACTCGTTACATTCTGCTCTTTAAATCTATTTCTGAAACACTCT
CAAGAAAATTTAATCAAGAACTCTCTACACTTGAACACTTTTCTTGATTA
TATACTATTGATGGACCTCTTGTGAGTATTAAAGAGTTGGTTTTACCAAA
ATATCTGTTGCAGCATTACTGCATTAGCTTATATATGTTAATAATAAATA
ACGAAGTGGAGTTATTTTTCTCGTTGAACACAAGAATTGTAGCTTTTCAA
ATTCCCCTTAATTCTGAATCTCTTCTACTGCTGCAGCTTGAAGTTGTTCG
TGAACTACTTGTTGGAAGCCTTGAGGGTGCAAACCGTTTGGAGGCTCTTA
TATACTCGGCTATTTATCTGAAGGTTTGTTGGTTCACTACTTGTTTTGCT
TTTGAATATTTCTACACATCTTCTAATTATATATTCCATTCACGTAGTGG
ATAAACACAGGACAAATCCCATGCTTTGAAGGTGGAGGTCATCACCGTCC
AAACAAGCATGCTGAGATTTCGAGGTCTATATTCCGTGAATTGGAGAGAA
TATCCAGTAAGAAGGACACCTCCTCTCAGGTGATCTGGCATTCATATTAT
TTATTACTTCTATCTTACTCTGAGCACAAAAAGGGTTCACATATGAGTAA
CTTGTTTTTCATGATAATATTTTAAGGTTTTTTCTGATGGACAAGGATGG
ATTTAGAATCATATCTTTCTTCGATTCTTCTCCTAAAACGTATTTTCCAC
TCGTAGTTCTTTTGTTCCAGTGTAGTATAATTCATCCGTTTATCTAAATC
TAAGCCCTTAATCTTCAACATCATGATTTTCTAAAATTATTTAATATTTT
CCTGTTTTCATGTTTTATAGTTCTCTTGATCTTTGTAGGTGTACCTGATG
AACAACAAACGACACCATTATCCACATTTCAGACTTAGTTCATGATAAAA
ATATTATATGCAATCATATTATTTTATTTTACCATAAAGTTTAGTTATAC
GTTTTAAATCATATGAACATCCGCCATTGCCAAACATTTAACTTTTTGCT
CTCTTTTTAAATCTTGATTCTTAATAGTTCTGTATGATACTATCTTGCTT
CCAAAGGTAAGCTACTCTTGACTTGCCACTATTGAACTCTTATTATTATT
GATCCATCAAATGGTAAATTACAGCTGAAAGAAACATTGTTGGCACATGA
GACTTATGTCATCTATATTGTTGCTTACATTAAATTGTTTGTAACTTACT
GTACAATTATCAATAATGTGCAGGAAGTACTTGTGATTCGCAAAATACAA
CCTTGTTTGCCATCATTTAAGGCAGAATTCACTGCATCGGTTCCTCTAAC
CCGTATAAGGGATATCGCCCATCGAAACGATATCCCTCATGACCTCAAGG
TTGTAATTGTTATAATATGCTAAATTGTTAAATGAACTATATTTTGTAAG
TAATGTCTTACTTAAATTTATACAACACAGCAAGAAATCAAGCATACAAT
ACAGAACAAGCTACATCGCAATGCTGGACCTGAAGATTTAGTTGCTACAC
AAGCCATGCTGGAAAGAGTTACCAAAAATCCCGGAGAATATAATGAAGCA
TTTGTCGAACAATTCAAGATATTTCATTATGAACTGAAAGATTTTTTCAA
TGCTGGAAGGTGTGCTTTCTAGTTTTGTTGTTTATTGTTTCTATTTGTGC
TAATTTAATCTTTTATTTTTCCACCAGCACATTAATCACAAAATTGTGAT
GGCTCTTACAGCCTTAGTAATACATCTTTTTGCCGTTTCAACATTAATAC
ACCAAGTTGTTATGTTTATGAAGACGAACAGTGCAGTAAACAAGGTTGGT
CCCTCCCTCCCCAGTACAAAAACAAAAACACAAACAAAACAAAGCCCTGT
GACAATTTATTTTGGAGAAACTGACTTGTTAGGAAACATGGTTTATAGGA
TTGAAGATAAATAGCTATTCTGCTGTAAGAGAGCGGTAGTTCATGCCCTG
CTCATTCTGGCCCCACAAGCATCCAATTCTTTGATTGCTTCAAACGTTTG
GCGGGGGCTTCTAATCTTGGCTCGCCATTTCCTCTGATATGTGTGGAGGG
CTGTAATCCGTTTGTGAGGACAAGTTGGGTGTTTGACGATTGTCTCTCAA
ACCTAAATATATTGGGAATGTATATAGTTAGCCCTTTCTCATTAGGAGAG
GTGAGTACATTTCACTCTTTAATAACCAAGCAATGGTAGCGATTTTGGAC
TGGAATACTCTAATCTGCCACTTGTGGTAGATGAAAGGACAGTGATCGGA
TATTCTTATCCGCTGCTGGTGGTGGTAGAAAGGAAGATGGAAGAAAGTTA
GGTCAAGTGCTAATGTTTTTCATCATACAGTCCACATTAGCTTTGTTATT
CTAGATTTCTTTAGTCAATTTAAGTGTATAAATGATACATATTATGGGTT
ATGTGTCTTCATGTTATCAGTTGTTTGAGGTTGCTCTCTCGTGCTTATCC
TTTGATATGGAGCCATGTTTGAGGCTGCTGGATGATTGTTCATATTAAAA
TCTAGGTCAAGTTCTTGTCAGAAAATAATATATTAGTTGCAACTACTAGA
AATCTGGATAGTTATTATTAGCTATTAAAATCTGGACGTAGACATATATA
TATATATATATATATATATATATATATATATATTATATCAGGATTAATTC
CTTATGTTCAAATACTTCTTTTATCTCGCCTGAATAAACTAAGGTCTTAC
TTCTACCTGAGAAGATGTATCATCCTGTATAAATCATGAACTGATGCATC
TGTTAAATCAGAGTATTTATTTATATTTTCAACATTAACCCAATATTTGT
TTCCTACATGCATCAAGCATTGAGTTTCCATCTTTAATCTGCTTGAGTTT
TACGTTTATATGCAAGTCATCATGTGAATTAGACATTCTAAATTCTTTCC
CGCACTTCAAGTTTGGAGGCGAGACCTGCAATTTGTGAGTTCGTAGTTCT
GACATCCTTATCAGGTTCATACCAACACTGGAGTTTGAGATCCTCACATT
TCTGCCATCACGAATTCAAAACAAGGCACTGAAATATTCTTCTTCTTAAA
ATTAACTTCAATTTAATTGTGAGTCATTAATTATTAAGCAAACGGACAGG
TGACAATAACTTGGACCTATAAGTTGATTTTAACTTGTAAGTGGCATACA
TGCCCTTAATGTGAGAGACAATTAAAGGACTTGTGCTTTTGCAATAGATT
GCATATACTGGTGTTGCTAGTTTTTCAACAATATAATTAATGTAGTAACC
GAATGCAGAATGATTTGGTTGTTTGCATTCCCTCTCTTAACTTTTTTCTA
TAATGTTAATCTAAATACTATTAAATTTCTAAGTTTATATTCACTTTTTG
TCTATCTATTTTTGCAGCCTAGCAGAACAACTTGAGTCAATAAAGGAATC
TTTTGATGAAAGAAGTTTATCAACCCTTTCTCTGTTTTTGGAGTGCAAGA
AGGTGGTTGTCTCTTACGTGTTATTATTTTCTGCATGCATTTTTTTTGTG
CAAATTTTGAAAGGAAATGGGTGGAAGGGAGGAAGGCGTAGGAAGGGCTA
AAGACCCCACTTATTTTACGTAAAAACTTGTTAATATATGATTATATGCT
AAATTAATTACATATTTGGTAAAATAAAGAACTTTTATTTTGTACTTAAA
GTTAAGTAAATTAATTATCCAATCAGTAAATTAAAAAAAGCAAATGCTAA
AATTCATTGTTTTGTCTGTTTGACTTTACTCATTAATATATTAAATAATT
AAAAAGTTCTGGTTTACCCTGGGGTGCCCTGGATACCCATGTGGCATATC
CCCTGTATCTGGATCAGGGTATGCAAAGTGATGCAGCAGTGGAAAAAATT
GTAATAAATTGAAGTTCTATAATTTAATAAATTTTTAAGTTTAATTGTTT
AGACTTTATACTTATTTAATGTATCAAACCTTGTTTTTTCATAACTTCGG
CTAAGAAAAGTTGTTCGCCTTTTTTCCACTTTAATTTTCCACCATAATGC
TGTTTAATGTTTTATTTAAGAAGTTCTGACTTCTTGCTCTTGTTTACTTT
TTACAAAATGTTGCCCCAGTTAAATTTGTATACATCTCTTGATTGAATGT
TGTTTAAGAAGAATATTTGTATTAAAGATTATATAATAATATTCTTGTAC
CTGATTGCTAGTGAAAATATCATATAATTTGTTTACATAAATTTTGAATT
TTTACATATGCTGTATTCCATTGGACCCCAGGATTACCTTATATTCATTT
TTACCAATTTTGCGTACCCCCTAGTACATGCCCACAATCTCCACCTGTAT
CATTGATTCTTTAGTTTAAACTATATTACTAATATTATGGGATGAAGTAA
ACTATAAATAGTGCCAGAGTGACATAAGTTATAGATAAACACATAATAAA
AGGTATTGTAAGCTTGTCCTGCTTATTTCATGTATTTTTACATTCGCTTT
AGGCACACCTTTTTCAGTTGCCTAATGAAGGTATAAGTTTAAACTTGGAC
TTAAAAGTTTGGTTGCCACTGATCAAAATCGCCAAATACGCGCCAGGCAG
TCACATAAAGACGAACAAGTTCATCAAGTACAAAAATTACGAAGTACCAA
TTAGCTGCATGAATGCATAGTTATCATTAAAAACATATAATATAAGGTAT
TGTGAGCAATCATACAAGTTGAAAGTAGTTCATGTCCTACTTTCATTTCA
TGTGCTTTTACATTCGCTTTAAGCAAGCCTTTTACAGTTGCCTAGTGAAT
ATATAAGTTGAAACATGGTGGTTTGGTTGGCAAATCAAAAGGGCCAAATG
GGCGCTAACTAACTTTGTCACATAAAGATGAACAAGTTCATTCAAGTACA
AAAATTATTAAGTAATAATTAGCTGTATTGTTGCAAATGTTTTTCTATAT
GTATTTATATATTACAATGAAAAAATTGATCCTTTTATCTTTTATATTTA
ATTAGCATTACTGAAATGAATGATATATAACCCACAGATTAAACATTTTT
CTTAATAATCTAGCTTATGATATGTTCTTATGGGATTAAATTGTTGACTG
CTAGGGTTTGGATAATTTCGGGGGAAGCACTACGGTGGCAAGTGATGAGA
TGGAACTACTGATGAAAACACTGCAGTCTTTGCAAAGTCTCCGAGGAGCG
ATTGTGAGGGGTCTTGAAAGTGGCATCCGAAATGATGCTCCTGATTCTGC
AATAGCAATGCGGCAAAAGGTGCACTGTTATGTTTTAGTACTGATTTGAA
TCTAATTTTTAGTAGACTGAACTTTCATTCCTATTGATGGTTTGACACAG
TGGCGCCTTTGTGAAATTGGACTCGAGGACTATTCATTTGTTCTCTTGAG
CAGGTATTTTTTATTCTTGACCTTATTTGAGATGCTTTTATGTGGAGATT
ATGGCATAGAACATCCAGTTCTAATTGATATTAACATGCTTTCACTAATA
GTATGTAATAGAAGCCTCAGTGTCGTATACCTTCAAAGTTGGCATATTAT
TGCTATTCGTTTTAGTAATTATATTGTATAAGTTCGTTAAGTTATGGAGT
ATCTGCATATTGCACTTTCTTAAGAAAAGTTCTCTTTTGCTATGTAGAAA
ATTAAAACAGTCCCTACTGAAGTCCTATGATTATGAATTTTTCTGTTTAT
CTGACTGATTTGCACAATTCTCAAAGTAAGATATATATTAGTATTTCATA
AGTCTGTATATATTAGTATTACATTTACTCAAAGCGTTACTCTGTCTAGT
TAGAGGAAATGTAATTTGATAGAAATGGGGTTGGATTTTCACTCTCTATG
GGTATATGAATTTATTCATTTTTAACTTATCTATAAAAGTTAATAATGAA
TGTTAATATTTCTCTTTCCTTCCATTTCACTAAAACAGATTTGAGCTGGA
GCACATACCACCATCCTCCAATTTGGGGATAAATGCTCATTCCTACTTCC
TGCTCATTTTCTTCACAAAACTCATCATATAAAAACTGCATCCTTTAGTT
ACACTCTTTTCTATTACATTATTTCTTTCACATTCAGTTCTGTTCCCAAA
TTACGCTTTCCACTCACCACAATTTGCGCAAGCATTTTACTACATGTGTC
TAAGTATGTGATTAAAATAGATCTCACATATTTAAATCATACCAATACTC
CCCTCATTCAGTTATACCTGTCCCTATGACTTCTTTTGCTTAATTATATA
AAATCATATAATTGCACACTATATTTTTTATCGTATCTGTCTTGAAATAA
AGTTTGATCATTTTTAATAAAAGATCAGAAAAAATTTGTTATGTGGAAGT
ACTTTTATAAACATTTTGTAGTGCACTTGGAAACTGACAGGGACAAGTAA
AAGTAAAAGGAGAAAATATATACCTGTATTGGGTTGGATTGTATATTGTT
AGACGCCCACTATGATCGTATCTTGATTTGCAGATCGTTAAACGTTAGTT
GCTAGTATAGCTAGTGTATAGACAAGGTTTCATCATAATATAAGGGTCAA
TCAGAAAATCATGGGCCTGCTTCTGCTTGAATTCAAATCTATTCTCTGGT
ACGATATCCTAATGCCCCTTCAGATCCAAAACTATCACATTATCTTGGTT
TTTTTTTCCCTATAATTGAGTTCACATTTGACATACATTTCTCTGCTTAA
AGTATAAAAATTTAATTTCCCTATATACCATTACAGTTTGTAAGGATATC
AAGGATTATTATGATACTGATGTTGCAAATGATTTATTATATCAACTATA
CGTTTGGTAAGTATGAATTTTCCCAAATACCTGCCCTAGTAGAATACAAG
AGTAAATACATATTTTGAAAGACTGGGATAGCATGCGCGCTAAGTTGGTC
TTGAAGTACCATGCAAAGAAAATAACTCTGCTAAGAGATACTTGCCTAGT
AAATACATATTTTGAATGACTAGGATAGTATGCGTGCTAAGTTTGTCATG
AAGTACCTTGCAAAGAAAATAACTCTGTTAAGAGTTAATAACCCTGGTCA
GGGGATTCTTTGCTTGTACATACTTTATATTAGTTCTATATAATGTCTAT
CATTGTAAGATTCTTATAGCAGTGATGATAAAATACAAGGCCAGTAATGT
ATAAATATGTATAGGTGCCTTAATACTCTCGAAGCTGCTGGAGGTGCTCA
TCAACTTGCAGAACATGTGGACTTGAAAAATATTAGATCTTGGAATGATC
CTATAAAGGCTCTCGTGGTTGGCATTCATCAACTGGGTCTATCTGGTTGG
AAGAGAGAGGAATGCAATGCTATTGGAAATGAACTTATAGCATGGCAAGA
GAAAGGCCTTCTGGAAACAGAAGGTATATCTGTATAACTAACAGTTGTTT
TACTTGGATTAGTAATGCCTCTCTAGTCTCAACTTCTGTGTCATATATTT
TATGTAGGCAGTGAAGATGGTAAAAAAATTTGGGCATTAAGGCTCAAAGC
AACTCTTGATAGATCGAGAAGGCTGACAGAAGAGTACTCCGAGGCACTTC
TTCAGATATTTCCAGAGAAAGTTCAGGTATAATAATTACATATTTACCGG
TCTAAAGTCATCCCTTTTTATAAGTTGTTCGTTGGTATTCAAAAAGTAAA
TTTAAAGATGTTTCTGTAATGAAATCCCCTATCTTTGGCCATCATCTACT
TTCTAGAGTAAACTGCCTTTCAAGTCAATGTTATCGAGTAGGTACCCTAG
TTGTTTCATATGTTGTTATTATGCTATATAATTTGTAACACTTTGCAATA
TCCAGTCCTGTGGAACCTGTGTTTATATACCCATAACATTTGCAAAGTTC
AGTGGGGTTACTGACATTCACAAGCTTCATCTTCACTAATAGGAGCCATA
ACCCTCTGCTACTTTGTCACTTGTCCTATACATCTTCATGGATAACTTAA
GCTTCTAATCGAGGATATTTTTGTCCTTGGCAGATATTAGGAAAAGCTCT
AGGAATACCAGAAAATAGTGTCCGCACTTATGCTGAAGCAGAGATTCGTG
CAGGGTATGGTGACATTATATTTGATATCATCCATTTTAAAATTTGTGAT
TTATGATTATGTATTGGTTTCCACTACTTATGAATTACCATAAACATCTA
ACTTTTGAGTGTCACTTTTAGTGTTATTTTTCAGGTTTCAAAACTTTGTA
CAATTCTCCTAAAAGCTGTAAGAACTGCCCTCGGATCTCAAGGTTGGGAT
GTTCTTGTTCCAGGAGCCGCTTCTGGAACCCTAATACAGGTACTTTATTA
CAACAGCTTTCACCAGTTATCTTAATTCACTTAAATATCTTTGCTTAATG
ATAAAATAGAATTATATTTTCTCCAGTTTCAAAAATATGAACCATGGATA
CTCGGAAGAAGATACCTATTAGAAGTTTATCATAATGTGAAGTTACCAAT
TCTCCTAAAACCTTGAGGTGTTAGAGTAAGGCCCAACAGGTCTTATATTA
TATAACAGTCTCCCTCAAACGTATATGCGATTGAACAGGAAGACAAACAG
AACCAAACTGGATATACAAACTGATAATTAAATTAAATAAATCAGGGTGG
AGGGAATCGAACCAGAGACCCCACCTGAATAGAGCTCTTATACCATGTAA
GTTACCCAATCTCCTGAAACCCGAAGGTTTTTGAATGGACTGGTTACTTT
ACACATAGTAACTGAGCCTCTCCAATGGAGAAGACCCCTTGACTAAAATT
TTATTTGGTATGCCACAAGTAAAAATCATAGAAATTATGTAAAAAGTTAC
GCACTCCAACGGGGCATTGCCTTGGCTAAAATTTTAGCCAACCGCCTGAT
GTTAGCTGTATTTGCTAAACCTGTAGAGACCTGTAGTAAGATTCCACATC
ATTTATTTCCATATCAGCACAGCGCCTTACAGGTTCAACAATTGTTACAT
AATCAGTATTTTATATCATGTAGCCAATGCTGTTGTTAGAGAAGGCCCCA
ACAGGTCTTATATTATTCAACACATATTAAGCTAGTTTTACTGATGACAT
ATTTTATACTAACTGGAGTCCGTGCAGGAACGAGAGCATCACTCATGTAG
TCATATGATCCATTTGCACAACTTTATTACATTAATATATTAACTATATA
ATGCATTCGCTAATGTTCATCTATGCTGATATATATGTTCACTTATCCAC
TTGTGATTCATGCTGCACATTTGATACAGTAGTTCCTATAGGTGTTTAGT
TATATACTTGTGGATGTCTATCATGCATGTCACATATGTTAAATGTTGTG
GTTTACATCTATACTGTCGTCTATCTTCCCTCAAATTTCGGCTGGAAGGG
ATTTGTTTTATTAATGACTTGCATGTGATTGGTTCTCGATTTTCAGTGCT
TCGTTTTGGTAATTCATGTGGAACTCTTCCAATCAACATGATTAATTTAC
TCTACCTTTCAGCATTTTCACCTTTGCATCTGATATAAAAATACAGTAAT
AGTTCTGCTCTCTATTACATCTTTGAGTCTCACTTCCTCAGTTCTGTAGG
TTGACAAAATTGTTCCTGGGACACTGCCAGCATCTGCAACAGGACCTGTG
ATTCTTGTGGTTAGCAAGGCAGATGGAGATGAAGAGGTTAGGAAATTTTC
TGTATTTGGATTTTAAGCTATCTATTATAGTCCCTGAGAGCTAATAAGTA
GCCATTTTTCTTGCTAATGCAATCTGGCAGGTAACAGCTGCTGGAAGTAA
TATAGTTGGAGTTGTGCTTCTGCAGGAGCTGCCCCACTTATCCCATCTTG
GTGTCAGAGCGCGGCAAGCAAGTCACATTCACAAATCGTTCCTTGTTCCC
ATTTTATTTGAGCCACTTCTTTTCTTTCCTTTTTTATATCATGCATTTCC
ATGCAAATGAGAAACTTATAGTTTTATCTGTTTTGTATAAAAAATTGAAG
TTGAAATTTTAATACAAATATATATAATTTACAAAAAAATGAACCGGCTC
AAATAGGAAAAAGAAGTGGCTCACATAGACATGAATTGGGACGCAGGGAC
TAACTTACAGTTTTATATGAATTAGATCATGAAAATAAATAATCACAGGT
TTTAATCTGCAGGAGAAAGTTGTTTTTGTGACTTGCGAAGATGATGATAA
GGTTAATGATATCAGAAAACTTGACCAAACATACGTGAGGTTGTCATTTT
CCATCTTTCTATCACATAGTTAGCTTTCCCTCAGAAGCCATCGTAGTAAT
TTATGATAGCATAATCTAATCCCTCTTTGATCCAAAACCACTATTTTCTT
CCTTTTCATACTTCATTTGCCTTTGTGATCATTTTTGTTTTATTATTTCT
TTTCCAGGTTAGAAGCATCATCATCAGGAGTTAACTTAACTCCATCAACG
CGTGAACTCGATATTTCTTTAGACAATCTTTCAAGCAATGGTTCATCAAC
AGCTGCAAAAACAGCTGATAGTGATCCCTCCTGGTTAGCCGCAGAAACTT
CTACAATTCAGGTACCAACCTATTTTCATTGAGTGTTTGAATATCATGCT
CCTGACCTGTAGTTCAATCTTCTCTTGGTTCTCATTTTGGTAAAAAACGC
ATCGTTGTTTAGGTTGACTCTACTGAAGACGTCATACCACTTGCTGATGC
AAATGTCCAATCTTCAGGTGCAAAGGCTGCTTCTTGTGGCCGGTTAGCTT
CTCTTGCTGCTATTTCAAGTAAAGGTAGTGCACTTGTGCCAAAGGCCATA
ACTTTTGTTATGAAAATTTGTTCATATTGTAAAAGTAGAAGAGCTTTGGA
AACTTAGTCATACTGTGTTACTAGCTCACTTTTATTTCTGCTGTGTGAAA
TATCATGTGTACCTCCCTACTATATAATATGTCTGGGAAACCTATCAAAT
TTCTCTAAATTTATCACATGGAATCATAACTGCAATATCTATCTTCAACA
TATTTCTCTCATTAAAACCACATAAACTATTAAGATATACAAGCAATTAC
TCCAACTTTTCTTCAAAAACATTACAGATGTTTTGCAACCCTGTTCTGTA
AAACCTTAAATACATTTTGGGGAGCGTTGTTTAGATCTGCACGTTTCAGA
GTTGCCTCCTATTCACTGCTTGGTGGCATGCTAGTTCTGGATTTCGTGCA
CATTTTGATTTGTTATCTAATTAATTTTAAGGAATCATATAAATCAAAGA
AGACTTGAAAGATGAATGCAACCACTTCTGTTAAAGATTTGAATGGTGTT
TGATATAGGACAACATTAAAGTAGCATGGTATAATTGGTAAATGTCTAAT
AAAACAATCAACAACAAGAGACGATTATAAACTGTCCCATAGGATGGGTT
TACAGAGTGTTTAACGCTAAATTAGAACTTGATATTATTCTGGTGAAGGT
AAATACTTGTGTAGTAATATAAGAACTTCCTAAATTAATTCTCAGTGAAT
TATAACAATCTCTAGCTTAATGAATCCTAAACCCCAGCATTACCTCAAAT
AAAAGATACATACTGTGGAAGTGTTCACACTAAAGGTAATATATATAGAT
ACCCTCTCGCACCACTGTTGCTAGCTTTGTAATGCTGCATATCACTAACT
GCTGGTCTTGTGATTGGCCCTTTTCTTCTTGGTCATTAGCTGCTAGTAGA
TATTACAGCTTGTACCGGATTTCTCCAGTCCCTGCTATTTATATCTGAGT
ATGTGCTTGGTGATAATTAGACCATATTATTAAAATCTTAATTATAATGG
TTTTTCATGAAAAATGGAAGGGGGAAAGAAATAAATGAGACTTTTTCTAA
TATATCTGGATATTATTGTTTTAATCCTGAACATATGATGTGAAAAAGTG
GTTAAAAGTTAAACATAATATTTGAAAGACATGGAAGATAAATCCTATAG
GAAATCAGCCCAAAATACTACACTGTTGCGTGTGGGAAATGGGCAACCCT
GTGCTTAATAAGTAGCATTTTTTCTGCTGTATGCAGCGCATTATAAGAAA
TATATTTTCTCCTGCATGCATGTTGTGAGAGACATCATAAAAATTTCAGT
GTTTGCCCTATTGGGAGATTGACTTTTCATTAGATGCGTACTCCAATTGC
GTGACCAATATACGAAGGGTCAGACATACAGTTGTGGTATATTAGACAAA
TTATTATAGTTTTATAGTATCATGGGGATAACCTAATCATGTTTCCCAAT
ATATAAGGAAAATGTAAATAATTTTTTTTTTTTGTCTCATTGGAATAGTG
ATGTTCTCATACACCTTCGTATTTGCAGATGATAATGTATCTGATTGCCC
CAAAACCTACTTACAAATCATTCATGTCTTTATGTTTTTTTTACCAACTT
GGAATTCAATAACACCTATAGTGGTTACATGTGATGTCCTAGATACACTG
TCTCTTTGTTGCCCTTTAGTTAACTTTTTCGTTTTCCTTAATCTGGTAGT
ATTCAATACTTTAAAGAATCTGTACATGTTAACTTTGAAATTGAGAAAGT
AATATATTGTAATCGTTTTTCTTAATCTGGTAGTATTCATTATATGGCAG
TTTACAATGAACAAGGAGTTCCGGCTCTGTTCAAAGTTCCCGCTGGAGCA
GTAATACCTTTTGGCTCTATGGAGTTGGCGCTGAAGCAAAACAACTTAAT
GGAAGTGTTCAGCTCACTTATTGGGCAGATAGAGTCGGCCAAAATGGAAG
ATGGTGAACTTGACAGACTCTGCAATGAACTCCAGGATCTTATATCTTCT
GTACATCCTTCAAAAGACATAGTTGAAATCTTAAAAACAATTTTTCCTGG
TAACACACGATTAATTGTGCGCTCAAGTGCAAATGTTGAGGACTTGGCAG
GAATGTCAGCAGCTGGGCTCTATGACTCGATTCCAAATGTCAACCTTTCA
AGTCCAATAATTTTTGGGGATGCTGTTAGCCGAGTTTGGGCTTCATTATA
CACCCGTAGAGCTGTTCTAAGTCGTAGAGCTGCTGGGGTGCCTCAGAAGG
AGGCTATGATGTCTATTCTGGTCCAGGAGATGCTGTCGCCTGAACTATCA
TTTGTACTCCACACACTCAGCCCAACAGATCAAGACCACCACTCTGTTGA
GGCAGAAATTGCTTCAGGTCTTGGTGAAACTCTTGCGTCAGGAACTCGTG
GCACACCCTGGCGTCTATCTTCAGGCAAATTTGATGGATCAGTACGCACA
TTAGCATTTGCAAATTTCAGTGAGGAGATGGTTCTTGGTGATGGTCCTGC
TAATGGGGAAGTCGTCCGTGTAACTGTTGACTATAGCAAAAAGCCCTTGA
CAGTGGACCCAATCTTCCGTCAACAACTTGGTCAGCGTCTTGGTTCTGTA
GGTTTCTTCCTGGAGCGCAAGTTCGGCTGCCCACAAGATGTTGAAGGATG
TATGGTCGGCAAAGACATTTATATTGTGCAGACTCGTCCCCAACCACACT
GA
Sequence Length:
16002
Sequence Checksum:
80f577dc35b5c9960939b8093ec0cea8
View location in JBrowse:
Cds:
>DCAR_027478cds ATGGTGCGATTAATTATATTACTAGCACACCAGGTTAAATTTGGGGAGCA CATTGCGATTCTTGGTTCAGCTAAAGAATTTGGGGCCTGGAAGGAGAAGA AAAACATGAACTGGACGAAAGATGGATGGGTTTCTGAGTTTGAGCTTGAA GGGGGTGAGTCTGTTGAGTTTAAATTTGTGATCGGGAAAGGGGGTGATCA CATGGTTTGGGAAGGGGGTGATAACAGAGTGTTAAAGTTGCCAAAACAAG GGAGTTTTGAGATGGTATGTCGATGGAACAGGACCAATGAGGCTATGAAC CTAGTTCCCTTGGGTTCAGAACTGGTTGAGGAAGAACAGGGGAATGTACA TCACAGGGTGTCTCCAGACGTGGATAAGGTGACTAGTTCTTTTGTGGACC AATGGCAAGGGGAAGCTGCATCTTTCATGCGATCAAATGATCACGGAAAC AGAGAAAAAGAAAGAAAGTGGGATACATCGGGGCTTAAAGGGATTGCTTT AAACTTGGTGAAGGGTGATCAGAATGCCCGAAATTGGTGGCAAAAGCTTG AAGTTGTTCGTGAACTACTTGTTGGAAGCCTTGAGGGTGCAAACCGTTTG GAGGCTCTTATATACTCGGCTATTTATCTGAAGTGGATAAACACAGGACA AATCCCATGCTTTGAAGGTGGAGGTCATCACCGTCCAAACAAGCATGCTG AGATTTCGAGGTCTATATTCCGTGAATTGGAGAGAATATCCAGTAAGAAG GACACCTCCTCTCAGGAAGTACTTGTGATTCGCAAAATACAACCTTGTTT GCCATCATTTAAGGCAGAATTCACTGCATCGGTTCCTCTAACCCGTATAA GGGATATCGCCCATCGAAACGATATCCCTCATGACCTCAAGCAAGAAATC AAGCATACAATACAGAACAAGCTACATCGCAATGCTGGACCTGAAGATTT AGTTGCTACACAAGCCATGCTGGAAAGAGTTACCAAAAATCCCGGAGAAT ATAATGAAGCATTTGTCGAACAATTCAAGATATTTCATTATGAACTGAAA GATTTTTTCAATGCTGGAAGCCTAGCAGAACAACTTGAGTCAATAAAGGA ATCTTTTGATGAAAGAAGTTTATCAACCCTTTCTCTGTTTTTGGAGTGCA AGAAGGGTTTGGATAATTTCGGGGGAAGCACTACGGTGGCAAGTGATGAG ATGGAACTACTGATGAAAACACTGCAGTCTTTGCAAAGTCTCCGAGGAGC GATTGTGAGGGGTCTTGAAAGTGGCATCCGAAATGATGCTCCTGATTCTG CAATAGCAATGCGGCAAAAGTGGCGCCTTTGTGAAATTGGACTCGAGGAC TATTCATTTGTTCTCTTGAGCAGGTGCCTTAATACTCTCGAAGCTGCTGG AGGTGCTCATCAACTTGCAGAACATGTGGACTTGAAAAATATTAGATCTT GGAATGATCCTATAAAGGCTCTCGTGGTTGGCATTCATCAACTGGGTCTA TCTGGTTGGAAGAGAGAGGAATGCAATGCTATTGGAAATGAACTTATAGC ATGGCAAGAGAAAGGCCTTCTGGAAACAGAAGGCAGTGAAGATGGTAAAA AAATTTGGGCATTAAGGCTCAAAGCAACTCTTGATAGATCGAGAAGGCTG ACAGAAGAGTACTCCGAGGCACTTCTTCAGATATTTCCAGAGAAAGTTCA GATATTAGGAAAAGCTCTAGGAATACCAGAAAATAGTGTCCGCACTTATG CTGAAGCAGAGATTCGTGCAGGTGTTATTTTTCAGGTTTCAAAACTTTGT ACAATTCTCCTAAAAGCTGTAAGAACTGCCCTCGGATCTCAAGGTTGGGA TGTTCTTGTTCCAGGAGCCGCTTCTGGAACCCTAATACAGGTTGACAAAA TTGTTCCTGGGACACTGCCAGCATCTGCAACAGGACCTGTGATTCTTGTG GTTAGCAAGGCAGATGGAGATGAAGAGGTAACAGCTGCTGGAAGTAATAT AGTTGGAGTTGTGCTTCTGCAGGAGCTGCCCCACTTATCCCATCTTGGTG TCAGAGCGCGGCAAGCAAGTTTTAATCTGCAGGAGAAAGTTGTTTTTGTG ACTTGCGAAGATGATGATAAGGTTAATGATATCAGAAAACTTGACCAAAC ATACGTGAGGTTAGAAGCATCATCATCAGGAGTTAACTTAACTCCATCAA CGCGTGAACTCGATATTTCTTTAGACAATCTTTCAAGCAATGGTTCATCA ACAGCTGCAAAAACAGCTGATAGTGATCCCTCCTGGTTAGCCGCAGAAAC TTCTACAATTCAGGTTGACTCTACTGAAGACGTCATACCACTTGCTGATG CAAATGTCCAATCTTCAGGTGCAAAGGCTGCTTCTTGTGGCCGGTTAGCT TCTCTTGCTGCTATTTCAAGTAAAGTTTACAATGAACAAGGAGTTCCGGC TCTGTTCAAAGTTCCCGCTGGAGCAGTAATACCTTTTGGCTCTATGGAGT TGGCGCTGAAGCAAAACAACTTAATGGAAGTGTTCAGCTCACTTATTGGG CAGATAGAGTCGGCCAAAATGGAAGATGGTGAACTTGACAGACTCTGCAA TGAACTCCAGGATCTTATATCTTCTGTACATCCTTCAAAAGACATAGTTG AAATCTTAAAAACAATTTTTCCTGGTAACACACGATTAATTGTGCGCTCA AGTGCAAATGTTGAGGACTTGGCAGGAATGTCAGCAGCTGGGCTCTATGA CTCGATTCCAAATGTCAACCTTTCAAGTCCAATAATTTTTGGGGATGCTG TTAGCCGAGTTTGGGCTTCATTATACACCCGTAGAGCTGTTCTAAGTCGT AGAGCTGCTGGGGTGCCTCAGAAGGAGGCTATGATGTCTATTCTGGTCCA GGAGATGCTGTCGCCTGAACTATCATTTGTACTCCACACACTCAGCCCAA CAGATCAAGACCACCACTCTGTTGAGGCAGAAATTGCTTCAGGTCTTGGT GAAACTCTTGCGTCAGGAACTCGTGGCACACCCTGGCGTCTATCTTCAGG CAAATTTGATGGATCAGTACGCACATTAGCATTTGCAAATTTCAGTGAGG AGATGGTTCTTGGTGATGGTCCTGCTAATGGGGAAGTCGTCCGTGTAACT GTTGACTATAGCAAAAAGCCCTTGACAGTGGACCCAATCTTCCGTCAACA ACTTGGTCAGCGTCTTGGTTCTGTAGGTTTCTTCCTGGAGCGCAAGTTCG GCTGCCCACAAGATGTTGAAGGATGTATGGTCGGCAAAGACATTTATATT GTGCAGACTCGTCCCCAACCACACTGA
Pep:
>DCAR_027478pep MVRLIILLAHQVKFGEHIAILGSAKEFGAWKEKKNMNWTKDGWVSEFELE GGESVEFKFVIGKGGDHMVWEGGDNRVLKLPKQGSFEMVCRWNRTNEAMN LVPLGSELVEEEQGNVHHRVSPDVDKVTSSFVDQWQGEAASFMRSNDHGN REKERKWDTSGLKGIALNLVKGDQNARNWWQKLEVVRELLVGSLEGANRL EALIYSAIYLKWINTGQIPCFEGGGHHRPNKHAEISRSIFRELERISSKK DTSSQEVLVIRKIQPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEI KHTIQNKLHRNAGPEDLVATQAMLERVTKNPGEYNEAFVEQFKIFHYELK DFFNAGSLAEQLESIKESFDERSLSTLSLFLECKKGLDNFGGSTTVASDE MELLMKTLQSLQSLRGAIVRGLESGIRNDAPDSAIAMRQKWRLCEIGLED YSFVLLSRCLNTLEAAGGAHQLAEHVDLKNIRSWNDPIKALVVGIHQLGL SGWKREECNAIGNELIAWQEKGLLETEGSEDGKKIWALRLKATLDRSRRL TEEYSEALLQIFPEKVQILGKALGIPENSVRTYAEAEIRAGVIFQVSKLC TILLKAVRTALGSQGWDVLVPGAASGTLIQVDKIVPGTLPASATGPVILV VSKADGDEEVTAAGSNIVGVVLLQELPHLSHLGVRARQASFNLQEKVVFV TCEDDDKVNDIRKLDQTYVRLEASSSGVNLTPSTRELDISLDNLSSNGSS TAAKTADSDPSWLAAETSTIQVDSTEDVIPLADANVQSSGAKAASCGRLA SLAAISSKVYNEQGVPALFKVPAGAVIPFGSMELALKQNNLMEVFSSLIG QIESAKMEDGELDRLCNELQDLISSVHPSKDIVEILKTIFPGNTRLIVRS SANVEDLAGMSAAGLYDSIPNVNLSSPIIFGDAVSRVWASLYTRRAVLSR RAAGVPQKEAMMSILVQEMLSPELSFVLHTLSPTDQDHHSVEAEIASGLG ETLASGTRGTPWRLSSGKFDGSVRTLAFANFSEEMVLGDGPANGEVVRVT VDYSKKPLTVDPIFRQQLGQRLGSVGFFLERKFGCPQDVEGCMVGKDIYI VQTRPQPH*