DCAR_027382 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_027382

Identifier:

DCAR_027382.gene

Locus Tag:

DCAR_027382

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_027382, is a part of gene, DCAR_027382.
The genetic_marker, MK002732 K0176, is located in gene, DCAR_027382.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_027382	DCAR_027382.mRNA	mRNA	DCARv2_Chr8:23586898..23597193

Sequence:

ATGAATTTTCTGAATCTGCGGTCCAATAGTTTTATTTCAACTTCAGAGCA
GCCGAAGCAGAAAGCCGAGCAGGAAATTCAGACAAGACCAACTGGAACTT
TGGAGGGACTTATTGATGAAGATCCATTCCCCCCTACTCCCCCCCCTCCG
GTGCACAGAGCGGGATTTAATTCCAGTTCCAGATTTGGTGCTGCCTTAAG
TGCGAATAGTAATACGGCGGGTGCGGAGAATCATGTCGATGTTACTGAAG
ATCAAGGATGGATCACTATTCCTTATAGTATGTTCTGTACTGATATTTTT
TTTTGAAACCAATTTATTAGTCGGATTGTCAATAAACTAAAAACTTTCTC
TTGATTTATTGCATTGATGGATACTGGCCTGATTGCTTTCACAGAGAATT
TTATTGCTGCTAGAATTTCTCAGTACGTACAATATGAGTAGTATAGAATG
AAAAAGAATAAATGCAACAAGAAATAATAGGACAACATATATGATAGATC
ATAGACAATGCAACATTCTTTTGCGAAACAGGAAACACTAAACCTGCCTA
CATTACTAATGATAACTTTTAGGCATACATTCTTGTATAGCATATACACT
TTTCCGGTTGTGTTTGTTAATTATATCTGCTACACTCTAACATTTTCGTC
TTAGGATCATAGACTTTGTTGTTTACGTTAGTTCACTATACACTTATGCT
TACTGAGTTTGTATGTATTATGTTCTTATTTGTAAATTTAGCTTATCCCT
AATGTTTATCTTCATAGATGAAGTGTTTGTATTAAACTGACACTGTATAT
TACTATGTGTTTTAAAAGAGGAACTACCTGAAAATTGGATGGAAGCACCA
GATATACTGTCATTTGAATCTTTGGACCGCAGCTTTGTTTTTCCAGGTTA
GTATTATTAATTTATATCCTCCTTTTCTAGTTCGGACATGACTGAGAGTG
TTCCTGGTGTTGTACTGTCCAAGACTTTATTATATATTCTATGCAGGTGA
ACAAGTTCATGTTTTGGCATGTTTGTCTCCATATAAGCATGATACAGAAA
CCATCACTCCATTTAAAGTTGCTGCAATGATGAACAAAAATGGTATCGGA
CGAATCCCAAAGATAGAAAATGGGAAAATTGCAGATGAACCAGAAAACGT
TTCAAGTAGAGTGGAGGTAACTTCTGATGGTCATGATAATGATCAGAATG
GAGTTGGACAATTTGATTTCAAAAAGGATGCTTCTCATGGTGAATCCCTT
CTTAGAATGGAAAATCAAAAAAGACAGACTGAAACTTTGCTTCAAAGTTT
TAGGAACTCTCATTTTTTTGTCCGAATAGCGGATTCGCATAAATCACTTT
GGTCCAGGAGAAGAGAATCAGGTGCATCGGCAGAATCTTCTTCAGCAACT
GAATCTTTTGATGGCGCAGATATAAGAAAAACAGAAAAGAAAACCTCTTT
AAGTGCATCTGTAGATAGAGGAGGTTTTGATGCCAGCTCTTCCGGGGGAA
TGGCCAGAAATAGTATCGAGTGTTGCGCTCTTTCCAATGGAGATATAGTG
GTATGTTTTGGAAGGGTTTGTAGGAATATTTGTAGTATTAAACTCTGGTT
ATAGGATTGCATTCTGGTTTTTCTGCTTTCAATTGAATGAACCTGTACTC
GCACATGTCTAGCCATTACTTGTGCATGTGTTTTATGTGTAGTTACTACA
CAAATGATGGTCATGCCTATAGTCTCACATTCTTAACATGCTTATGTAAC
AATTTTGGGTTGAATAGTCCGTCAAAGTTCAAGTAAAATTTAATGATCTT
GCTTATGGACGAACCTTGGGGTCAATCTTGTAATAGAACGTGAACATGAA
TATTCCCTAGGAGTGTTAAATAGAAATGTGCTAGTCAAATATACTAGTAT
TAAAGCCATTCGATTATATAGGTAAAGTTTAAGCATGCATGATGGCTAGG
CACAAGTGGTGGTGTAATGATTGATATAAGTGATGTGGTGCACGGATAAC
GGAACTAAGGGATTGATTTTAGAATTTTAAATAGATAAATTTGTTATCTA
ATTGTAATTTATTTAATTCCCCAATTATATAAGAATTAAATGCTTCCCAC
CTTTATTAAATTAAAAAATCCAATTAGAGTAACTTTCCTTCCATCTAGGA
TTGTACTTGTCCTCGAAGATTCAGTATCTCTATTTGAACTTCTGTAATTT
CCAGTATTGGGGGGAGATTTGCATTCTGAAATAATTTGAGAAACTGTGCG
TTCTCTTTGTATTAAATTGTCTCGTTTGAGATATTTATTGGGGAAGAGTT
GCCACATCACTAACCTTAAACCTTGGTCTACATCAAGAAGCTCAAGTTGT
CAAATATCTGGTTTATCTTTATGTGTTTTTCAGGCTAATGTCTGAGGATG
TTTAAGTTTATAAAACTATCAAATGTCAGACTGGTTCTTTTCCGTCAATC
TCAACTACTTTAGCTTGGTTGAAAATGGGGTGATGAAACGCTATGTGGTT
ATTTTAGTGATTATTGACCACTAGCTGTCTGAGCAATTGTTGTTCTGTAA
ATATGCTTAACTGTACTAGTCTTTCTAGGTAACAGGATATCAGGTAGTCG
CTTACAACTGTTAACAACCACCTTGAAGAACATGTATACTAGAACCCAAA
AAGTAAATTCAAGGAGGATGGTAATCATTAGCATAATTTTCTACTTACTC
GATATGTTTACTGAAAAGCCTGTATGAGACTCTATTAGTGGTTTAATTAC
TCCAGTTTTAGTGACTGTGTTTGACTTTGTCTGCCAAATAAGGCTTAAAA
GTCAAAGGCTAAAATAACCCTCCAGATTTAGTGACTTTGTTTAGGTTCCT
CTAGGCTCTACCAGTAACTTTTTAAGTAAGTCTAGGTGTTGGATATTTAT
ATTTTGAATTGGAAACTCTTCCATTAATTGTTCTATGGACAGTTGAAAAT
GATTCTTGACTCACTGAGTTGGATGCAATGGATACTGAAATATCTATATA
GAAAGTAAAAAAAAGAATCTAGATGCAAAAAGTTCCTTGTATTGGTGATG
TTTTTGATCTTTTACTTTAGATTCTAGATCTTATTTGGTTGCAATTGATC
ATTTCTCATGTAGAAGAATTAATAATTCTTATTCGATTTTCTTGATTGGA
AGGGTGCAGGTATTATTACAGGTGAATGTTGGTGTTGATTTGTTAAAAGA
TCCCGTCCTGGAAATTCTTCAGTTTGAGAAATATGAAGAGAAAAGTCTGA
GTCTTGAGAAACCGAAAAATGTGGTGCCTGCAAATGAGGATCCCTGTGGA
GACTTACTGAAATGGTTGCTTCCTTTAGATAATTCCATTTCTCCTCCATC
TCGGCCATTATCTCCTCCTCCTCCTTCCTTGAGTTCCAGTTCAAGTATAC
GTACCACATCCTCAAGGCCCAACTCATCAGCGTCATCTACGTCACAGATG
TTTTCTTTTGGAAACTTCAGAAGTTATTCAATGTCGGCACTTCCGCCAAA
TAACCCTCCACCTCCTACTGTAGCCCCTAATCCAAAGCCAAACTTTGATA
CTGAGGATTGGAATCAATTTTCATATAAGAGTTTTGGGAAACCGGACAAT
ACTGGTAATGAAGGTCTTTTATCTTTTAGAGGAGTATCATTGGAACCTGA
AAGATTTTCTGTATGTTGTGGATTGGAAGGCATTTATATCCCAGGAAATA
GGTGGAGGAGAAAAATTGAGATAATCCAACCTCTTGAGATCCATTCTTTT
GCTGCTGAATGCAATACAGAGGACCTTCTGTGTGTCCAGATAAAAGTACG
AAAATTGTTAACTTTTGTTTTGATACAGAAGTGCAACCATAACAGGGGCT
TTGTCTGCAAACAAATAATTTTCTTTTTGAATTTTTTTCAGAACGTTTCT
CCCGCACATACACCAGAGATCATGGTTTATTTGGATGCTATTATGATCAT
ATTTGAGAAGGCATCAAAAGGCGGACCTCCTTTATCTGTACCAATTGCAT
GCATCGAGGCCGGCACTGACCATTGTTTGCCTAATCTTGCTCTCAGGTAA
GTGTCTAGAAGGACTAAACCTTGTACATACCTCCCACTTGCTAGACCAAG
AGAAGTATTTCTCTCTTATAACATTTTCTTTGTAATGATGAAAATTAATG
ATCTGTCAATCATAAAGCATGCAGAGTCATTGTATAGTTTTTTCTTTTTA
GAAATTATTAGATTTTTACTTTTATATTTTTTTCATGACTTGAACTTATA
TATTTATTCTGCAAGGAAATGTTTTTCTGCAATCAGTCTTATGTCGTTGG
AATCAGACCAATTATCTTCCGGTTTCAGTAATACTGGTGCACCTACATGT
TTCTCATTAGGATAATTGCAACTGCTGTGATGTATTATATCTCTTGCGCC
ATTTTATGTATTTACCATTTATCAGAGTTCTATCACCAAATTTATTAATT
TATATCATTCTTATAGTATTTTCGTGACCTCGTATTAAAGTCTTGGGACA
CATGTTAATCCCGTTTACACTCTAAAATTCTTTCTGAAGCTGAGACTTAT
AGCAGGTATCAATTGGTTGCCAAATGTATAGTATGACATGTAATATATTG
ACCTTAAGTTGTCTGGAATTATAAGTTCTAAAGATTGTCCGTGTCTTTCT
CCTTGGAACATCATTGTCATGGTGGTAAGTCAAGTTGACCGGCCTCCGCT
AGTCGACCAATTAATATCGATACATTATAATATATTAATGTATATCACTA
AATCATGAGTTCAATTATATTTTAAATAATCTGTAGATATATACTACTCC
CTCTGTCCCATTTAATTCTATACGTTTCTTTTTAACTGCTCGACACGCAT
TTCAATGCTCTTATAAAATATAGTTCCGTAACTTTTTTTTGAGATTTTCT
TTTTCTGTATAAAAATATAACATCCAAACTTTAATACAGAAAAGAAAAAT
TTTAAAAACAAATTGCACAACTACATTTTGCAGGAGCATTAAAGTCCGTG
CCGCGTCCCCGTCCCCCAATGTATACAACTCAGGGGGACGGAGGGAGTAC
GTAGCATTTGTTAATATAAAGTGAAATAGAAAGAGGGTCTATTTCAAAGT
AAAGTAACATAAAGGAATATACTAATATTAGAGACATAATATGTACAAAG
TGATAAGATGTGTTGGGTAATTGAAAAGCCGTCAACGATAACTGATATAT
CAATAAACAAAAGAAAGAATGAATCTGCTGTGTAATCCAGGTACAAGTCT
GAATCAAACAACTCTAACATTGTTGACCTCTTCCCTTTGATATGCATCAA
ACACAGGCTTTTTTTCAAATAGAAACCAAAATTAAACTACTAGAAACTAA
TTAATACTAATCATTAATTTAAAAAATATTACATGTATAATCTGAACCAT
AGGCATTGAACCCCCTATTTCACAGCACCATAGAATCACCCCACCACCGG
CTCAATACATATCTATTTATTAATTTTATACACCATACCTTCCCTCTCAT
CCCTATATCATCTTGCCATAGTCACTTAACTATACTTGTCAACACTTCCT
TTGTCACTCAATCTCCATCCAGATTCGCCTTCCCAATCCACCACATTGGA
ATTCGCCTTCCTTATCCACCACTTTGCTTGTCGTACTTCACCACACCATT
ATCTCTTTCTCTACTTGTTTTTTAATATTTGCTTCTTTCTTTCTGCTCCA
TTTTTTAGTTTGAGTTGTATATTCAATTTTATATGTCTTCTCTAAGGTGG
GTCAAAGTGTCCACATTTCAGTCAAAGGATCTGACATGGAATAAGTGCCG
TGTTTGAGTGTGTAAGTGTGCGACAGATGTATGGCTACCTAAACAGAAGA
TTCGGAGTAACATAGGTTAATGGTATTCGAATTTAAGACCTTTAACTCAT
GCTAATATATGAAATATTTATCTACTTTTTAACAGTAGATCTGACGGTTG
TGTTGAATGTATTCAATGAATTAACGGCCATCTCATGAGTGACTAACCAA
ACCAACCAAACAACAAATGAAATATACCCTATTCCGGTTATGATAGTATA
GTACATAGACAGATAGATATGTACAAACATTACTTGCATGTACAAGATAA
AGAAAGGAGAACCGAAGATTGAAATAGCTATCACATACTACTGCATCTGC
ATCAGTTAAAGAATCCATAGTTATAGGTACTTGCACAAACACACACACAC
ACACGATATCCATACTTTTATGTACAAGAGAAAGGAGGGACAATCAAAGA
TTGACCAATTGTTTCGAACCATTTGATGGCCCTAATTGCTTTAGGCGACT
GAATAATGAACATAAACCCGGTCGAGCATCTCTTACCGCCCCTAGCCGTG
TCAACCATGCCTCAGACAATTAAAGTGCAAAATGCATTGAATTATGCCTA
CAGTGTGCAAGAAGTTGCTATTAGAAAGTTTTGATAGCAGTAAATGTGAT
TTGATGTAAATATGACTTACTTTTGGAGTACTAGTCGGTGAAAGGATTGC
AATGATATTGGAGAACAAGTATTGAAGAATATAAATTACTCTTTTTGTGC
TTCAATTATAATTGTTATAGTGTAAACTTGGCAGGAGGGGTGAAGAACCC
TCTTTCATTCTCAAACCGGCGACTTCAATGTGGAAGACTCTCAAGGTTCC
TAGTGAGAAAAATACCCAGCCCTCTCATTCACGCACTGGAAGTGTATCAA
CAAGTTTTCAGCATCCAAACAATGTTGATCAAACTGCTTCAAATAACGAT
CAATATGCAGTTCTAGTTTCATGTCGGTGCAACTATACTGGTATATATCT
TATATATATTTCTTCTCGTACTTTTACCAGAGATTACTTCAGAATACTTC
TTGATGCTTACTGTTTTGTGTTACTTCCTCATTTTGTCAAAACCTTGATC
TGTTTCTAGAATCAAGGCTTTTCTTTAAGCAGCCAACTAGCTGGCGACCT
CATATTTCAAGGGATGTTTTGATCTCTGTTGCATCCGAAATGTCGAAGCA
AACTCTTGTATCAAATGGAAGAGTCCCTCAACTTCCCGTTCAGGTTCTGG
GATATATCATTTATGCACATATGTTAATATATTTATGCACATATGTTCAT
ATACTTAATTATTTGTTGATGTGACTTGGTTTGGTGTGTCAGACATGACA
AACATACAATTTCAAATTTGATATGTTTTAGAATTGGCAAAGTGTGGCCT
GTTAATATTTTACACCATGCTCCCAAGTTTTAAATAGGAAGGGAAGCAGA
TTTGCAGAATAAAATAACATCATTTGCATTCCAAAGTGCTCCAGAGCATT
ATTTTTTAAAGAACTGCTGGTAGAGAGTGATGTAATATGCTTTCCGCTCT
AAAACTTTCATTTCAAAGTGGAATGCAAAGGAAAACAAGTTGGTGTGGGA
TATACCCATAATGCTTCAAATGCCCCTTACTAATTAAGATATCACTTTTT
AAATACAAGGATGGAGTTGTAACTTAACAACTCTCATATGCTTTCTTTCT
AACTCGGGAACACATGAATAGAAGTAGTTTCACTCAAACTTTTTTACTTG
AAAAGAAATAATTGAAACTCCTTGCATTTCACTTAATTTACTTTCTTATG
CTATCAGCCCTTAAAGTACCTGGAACCGGTGGACAGAAACCTTATAATTT
TGTATAAACAAGCATATTGGATAAAATTATTGTAATATTAACGAAGAACA
TACTTAGCTAAACTTATTTTGTGAATGACTTTGCGAAGTTTCAGATGTTT
TTATTAAAACTATTATAAATGTACCATTGATATCACTATTTGAGATTGTG
TTTAAAACAATGTATTTTTATCAGAGTTGGTAAAACTTATTACAAGGAGT
CAAGGAGTGTGCTAAATTTAGATCTTTATGAATTTTTGATTATAAGATCA
GACACTCCTCCACTTGCACTTTTAACTAGGTATCAGTGTATTATTTGATA
AAATGATAATATTGTAATCTGTTTTTTTTTTCATGATTTATATATATGCA
TGAACAGAAATGAAGCAAATTATACTATTGAGAATATATTTTGTATCAAT
CTGACTTTAATCAAATATTTCCCACTTTGTTATGAGTTCTGGGAGAATTT
CTATTATTGATATGCGTCTCACCAATGCCAACCAGTCTATGCTAATGCTG
TCATTTGTCATGCTGTGTTGACACCAGTATGACCGTCGAACGAGAGAGTC
GGATTAACAATGTTATACATCATATATTGTCAGGGTCAAGCTCCCAACTA
TAATTATAGAATAAGCTGATATATATGTATATATGTATTTTGTTCTGTCA
GGTGTTGACTCTCCAAGCTTCAAATCTGACATCTGAAGATCTAACGATGA
CAGTTCTTGCTCCGGCCTCATTTATGCATCCTCCCTCTGTACTGTCCTTG
AATCCCTCTCCAAGATCACCATTGAGTCCATATGTTGGTTCTTCAGGGTT
CGCTGGCAGATTTCAAGAGACGAGTTCACTTCCAGTTGAGGTGGAAATTC
AGAAGTCTATTGGTGATGGTGGACCATCTTTTATTTCCAGCGAGCAACTC
TTTGCGATGTCTGATGTATTGCCAAGGGGTGATTTGGGTTGTACACACTT
GTGGTTGCAGAGCAGAGTCCCATTAGGGTAATACATCCCTGGTCCTCCAA
GCACAACACAAACACCAAACCCCCCGTCCCCGCACTCCCCTTCTCTCTAT
GAATAAAATGCAATTGTAATATTTTTCTCTGTTTATCAGATGTGTTCCTG
CTCGATCCACAGCAACAATTAAGCTTGAGCTATTACCATTAACTGATGGC
ATAATCACGCTAGATTCATTACAGATCAATATTAAGGAAAAAGGTACTTT
TTAGCTTATACATACCTTAATTTCTGTAAGTTACTTTCAGAATTCTCAAC
ATAATTACATTGTTCCTATACTTGCTAATTTACTTTACTTAAGCCAGAAT
GTGTTGACGTGAAAAAGTTGTACCAATATTCAATGTTTGTACTCTTATTA
CATGTGCAATTGGCATTTCCTAGTTGCTACTTTATTATACCACCTCCATC
CCAAATTAGATGTCCCATTTGACTTTTGGCATGTACTCCAAGATGCATTG
AACACATAGCTCTGCAAATTATTACTTTATATTTCTTTTTGTATATAAAA
ATTAGATGCTTAAATTTTAACTAAAAAAAGAATATTTTAAATATAATTTA
CAGTGTTGTGTGGTCAATGCATCTTAATATACTTGTCAAAAGTCAGAGGG
GACATCTAATTTGGGATGGAGGGAGTATTTCAAGAGCAACCCGAATTGTT
ACATGTTATTTTTGGTACGTATTTCTTGTTTGTAACCATGGTTGTCATGG
CACTCGACCAGTTGTTCTGGGTCGTCGACTGGTTATTTAAAAGACCAAAA
CCTAGTCAAAAACAAGTCAAACCGGGTTCAAATCTATTTAACAAAAAATC
AAGTTATTTAGCAATGTTCTGAGCACAGCATTGAAACAATCTATATGCAC
AGCTCCTCTGTTTTTCCTGCAGTTGCATTCTGCAGAACTGCTCTGTTTTT
GGTAGTTAAAGTGCACTGTTCTTGACATCTTGTTATGTTTTTCTGCATTA
AAATTGGTATCTTTTTTTTCGCATTAAAACTGCATAAATTATGTTCATAA
TTTGCAAGCTGCATTGTTAATTATGTTCCGTAAACTTCATTTATCAATAT
TATTAAAGTTAGAAATTTGCAATGTCATTATGTCACTTCATTGTTACTTC
TTACATAATCACATTTCATAAGACATTTTATCACATTTCTCTTTTCTAAG
CATTCTCTTCAAATCGTCATCCTTGGATCTGTAATACAATATGTTGATAC
TTGTTAGGTGTTACAATTTAGAAGCCTAAATTGCATATAATATATAGTGT
TTGTGTATATATTAATTATAAAAAAATAAATAATTGTAATTACTTTTTTT
TGGTCGACACAACCCATTAACTAGCTGGAGGTCCATCAACTCGCCTGGAC
TTACCGCCGCGACAACCATGTTTGTAACTCGTAGTTTTGGGACTTTATCT
GACAACACATCCTTGTTTTTCTTCTATAATGTTGGTCATATTACATAGTG
GGTGATAGTTTATTCTGGAAGGTGTTTCTGTTTTGAAAAAGATGCATAAT
AAATCAGGATCTTTTTATCTTTAATCTGTTTATGAAAATGACTGACCACT
TGGAAGTGCAATCTGGCATAACAGGTCAGACTTATATTCCTGAGTATTCT
TTGAAGATAAATGCAACGTCCAGCGTCGCCACAGGGATCAAATAG

Sequence Length:

10295

Sequence Checksum:

300d565d3632fbba108bd6d5cb9b42fc

View location in JBrowse:

DCARv2_Chr8:23586899..23597193-

Cds:

>DCAR_027382cds ATGAATTTTCTGAATCTGCGGTCCAATAGTTTTATTTCAACTTCAGAGCA GCCGAAGCAGAAAGCCGAGCAGGAAATTCAGACAAGACCAACTGGAACTT TGGAGGGACTTATTGATGAAGATCCATTCCCCCCTACTCCCCCCCCTCCG GTGCACAGAGCGGGATTTAATTCCAGTTCCAGATTTGGTGCTGCCTTAAG TGCGAATAGTAATACGGCGGGTGCGGAGAATCATGTCGATGTTACTGAAG ATCAAGGATGGATCACTATTCCTTATAAGGAACTACCTGAAAATTGGATG GAAGCACCAGATATACTGTCATTTGAATCTTTGGACCGCAGCTTTGTTTT TCCAGGTGAACAAGTTCATGTTTTGGCATGTTTGTCTCCATATAAGCATG ATACAGAAACCATCACTCCATTTAAAGTTGCTGCAATGATGAACAAAAAT GGTATCGGACGAATCCCAAAGATAGAAAATGGGAAAATTGCAGATGAACC AGAAAACGTTTCAAGTAGAGTGGAGGTAACTTCTGATGGTCATGATAATG ATCAGAATGGAGTTGGACAATTTGATTTCAAAAAGGATGCTTCTCATGGT GAATCCCTTCTTAGAATGGAAAATCAAAAAAGACAGACTGAAACTTTGCT TCAAAGTTTTAGGAACTCTCATTTTTTTGTCCGAATAGCGGATTCGCATA AATCACTTTGGTCCAGGAGAAGAGAATCAGGTGCATCGGCAGAATCTTCT TCAGCAACTGAATCTTTTGATGGCGCAGATATAAGAAAAACAGAAAAGAA AACCTCTTTAAGTGCATCTGTAGATAGAGGAGGTTTTGATGCCAGCTCTT CCGGGGGAATGGCCAGAAATAGTATCGAGTGTTGCGCTCTTTCCAATGGA GATATAGTGGTGAATGTTGGTGTTGATTTGTTAAAAGATCCCGTCCTGGA AATTCTTCAGTTTGAGAAATATGAAGAGAAAAGTCTGAGTCTTGAGAAAC CGAAAAATGTGGTGCCTGCAAATGAGGATCCCTGTGGAGACTTACTGAAA TGGTTGCTTCCTTTAGATAATTCCATTTCTCCTCCATCTCGGCCATTATC TCCTCCTCCTCCTTCCTTGAGTTCCAGTTCAAGTATACGTACCACATCCT CAAGGCCCAACTCATCAGCGTCATCTACGTCACAGATGTTTTCTTTTGGA AACTTCAGAAGTTATTCAATGTCGGCACTTCCGCCAAATAACCCTCCACC TCCTACTGTAGCCCCTAATCCAAAGCCAAACTTTGATACTGAGGATTGGA ATCAATTTTCATATAAGAGTTTTGGGAAACCGGACAATACTGGTAATGAA GGTCTTTTATCTTTTAGAGGAGTATCATTGGAACCTGAAAGATTTTCTGT ATGTTGTGGATTGGAAGGCATTTATATCCCAGGAAATAGGTGGAGGAGAA AAATTGAGATAATCCAACCTCTTGAGATCCATTCTTTTGCTGCTGAATGC AATACAGAGGACCTTCTGTGTGTCCAGATAAAAAACGTTTCTCCCGCACA TACACCAGAGATCATGGTTTATTTGGATGCTATTATGATCATATTTGAGA AGGCATCAAAAGGCGGACCTCCTTTATCTGTACCAATTGCATGCATCGAG GCCGGCACTGACCATTGTTTGCCTAATCTTGCTCTCAGGAGGGGTGAAGA ACCCTCTTTCATTCTCAAACCGGCGACTTCAATGTGGAAGACTCTCAAGG TTCCTAGTGAGAAAAATACCCAGCCCTCTCATTCACGCACTGGAAGTGTA TCAACAAGTTTTCAGCATCCAAACAATGTTGATCAAACTGCTTCAAATAA CGATCAATATGCAGTTCTAGTTTCATGTCGGTGCAACTATACTGAATCAA GGCTTTTCTTTAAGCAGCCAACTAGCTGGCGACCTCATATTTCAAGGGAT GTTTTGATCTCTGTTGCATCCGAAATGTCGAAGCAAACTCTTGTATCAAA TGGAAGAGTCCCTCAACTTCCCGTTCAGGTGTTGACTCTCCAAGCTTCAA ATCTGACATCTGAAGATCTAACGATGACAGTTCTTGCTCCGGCCTCATTT ATGCATCCTCCCTCTGTACTGTCCTTGAATCCCTCTCCAAGATCACCATT GAGTCCATATGTTGGTTCTTCAGGGTTCGCTGGCAGATTTCAAGAGACGA GTTCACTTCCAGTTGAGGTGGAAATTCAGAAGTCTATTGGTGATGGTGGA CCATCTTTTATTTCCAGCGAGCAACTCTTTGCGATGTCTGATGTATTGCC AAGGGGTGATTTGGGTTGTACACACTTGTGGTTGCAGAGCAGAGTCCCAT TAGGATGTGTTCCTGCTCGATCCACAGCAACAATTAAGCTTGAGCTATTA CCATTAACTGATGGCATAATCACGCTAGATTCATTACAGATCAATATTAA GGAAAAAGGTCAGACTTATATTCCTGAGTATTCTTTGAAGATAAATGCAA CGTCCAGCGTCGCCACAGGGATCAAATAG

Pep:

>DCAR_027382pep MNFLNLRSNSFISTSEQPKQKAEQEIQTRPTGTLEGLIDEDPFPPTPPPP VHRAGFNSSSRFGAALSANSNTAGAENHVDVTEDQGWITIPYKELPENWM EAPDILSFESLDRSFVFPGEQVHVLACLSPYKHDTETITPFKVAAMMNKN GIGRIPKIENGKIADEPENVSSRVEVTSDGHDNDQNGVGQFDFKKDASHG ESLLRMENQKRQTETLLQSFRNSHFFVRIADSHKSLWSRRRESGASAESS SATESFDGADIRKTEKKTSLSASVDRGGFDASSSGGMARNSIECCALSNG DIVVNVGVDLLKDPVLEILQFEKYEEKSLSLEKPKNVVPANEDPCGDLLK WLLPLDNSISPPSRPLSPPPPSLSSSSSIRTTSSRPNSSASSTSQMFSFG NFRSYSMSALPPNNPPPPTVAPNPKPNFDTEDWNQFSYKSFGKPDNTGNE GLLSFRGVSLEPERFSVCCGLEGIYIPGNRWRRKIEIIQPLEIHSFAAEC NTEDLLCVQIKNVSPAHTPEIMVYLDAIMIIFEKASKGGPPLSVPIACIE AGTDHCLPNLALRRGEEPSFILKPATSMWKTLKVPSEKNTQPSHSRTGSV STSFQHPNNVDQTASNNDQYAVLVSCRCNYTESRLFFKQPTSWRPHISRD VLISVASEMSKQTLVSNGRVPQLPVQVLTLQASNLTSEDLTMTVLAPASF MHPPSVLSLNPSPRSPLSPYVGSSGFAGRFQETSSLPVEVEIQKSIGDGG PSFISSEQLFAMSDVLPRGDLGCTHLWLQSRVPLGCVPARSTATIKLELL PLTDGIITLDSLQINIKEKGQTYIPEYSLKINATSSVATGIK*