Resource Type:
Gene
Organism:
Name:
DCAR_027287
Identifier:
DCAR_027287.gene
Locus Tag:
DCAR_027287
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_027287, is a part of gene, DCAR_027287. |
| The genetic_marker, MK010981 8_24451522, is located in gene, DCAR_027287. |
| The genetic_marker, MK006388 K3832, is located in gene, DCAR_027287. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_027287 | DCAR_027287.mRNA | mRNA | DCARv2_Chr8:24451829..24459497 |
Sequence:
GCTGCATCTGCACATAACTCTGGGCACGAATCCCAACGTTCGCATCACGC
ACGCCCGGTTATATTATTCCCGGCTTCTCACCTTCATTCAGTCAGGGCTT
TGCAGTTCTTGAACAATATACCCGTTTTTTAGGTATTTTTTATTTATTTA
TCTCTCTATCCTTTCTAGTATTTTAATTTAGTTTCATTAATTAATCTTTT
AATTCCTTTTGTGACCACAAAATCTGCACTTAATACAATGCATGTTCTTA
ACTTTGGCAGGATCATTCATACATATATATTTAGCTTTAAGTAGTTCAAT
CTTCTTGAATTGACTGAACAAGTAGAAATCTCCAAGTACAAGGTATGAAT
TGGATGTTATTATGTGTGTATGTATGTATAATTAATTGCTATCGGGTCTT
GATTTTGGACGCATGATAGTTGATAAGTTGTGATATTTGTTTAGTTTGCT
AATTGTTGATTACGATATGTGGGTGTGTTCGTGTTCATATAATTGTGAAA
TTAAATTAGGTCTAGGGTTTCGATAAGCTGTTTGCTTGAAAGTTGCGTAA
TTGTGACAAGAATGCACAAGTTTTGAGGACTTGAGAATTTTATTTGGAAA
CTTGATCTATTTTGCGGAGTATTGAATTAATGGTATAATTCATGCTTGGT
TTAGAGTATTTAGACTGCACATAGAGGATACTTTAGGTATATAGAGGAGC
TCGGTTAGGGTCAATTGGGACTCCGGATCTATGTAGTCCTGAAAGATATT
GGGCAGGATATGGGCGTTGGTTTCGCTTTCACCGCTATGATCTATGAGGT
TGCTCCTTGCTTATGCATGCAATATTGGTTAGAAGCTTACATTTCACCCC
AAAAATCTTTCACTTCATGAAATGATTCTTGAATGTTATATTTTGCAAGA
GATGCAGCAAACTTTGCTCAAATTTTGTTTTTGTTGCTCATTTGCGTTGA
TAGTTCTGGTCACCAGTTTTTCATCAAGTCCTTGGCTTTATGGGTATGAG
GTTTTTTCGGGTCCAATAATTTTCTATTAAAATTTAAATTAAAAAACTTA
AGGTGTTGTGTATAGCATTTTAACATTAACTTGTGATGCAAGTTGTCCTA
TAATTCTTGCATACTTGGAGAAGTTATGATACAATGACAAATGTGTTGTT
GCTCTCCGGAATGAAAAATCTTAGGTCGATTTCTTAGAAGCTGGAAAAGA
GAACTGAATTTTAATATGCAGAAGTTCTGCGCATATTGATTGTTATGTGT
ATATCAAGATTAAGTATCCCTGTCAATTCATAGATATACTTTCCCTGTGT
TATGAAATGTCTCAAGAAGTGTGCTTTAAATATATCTGTTTCTTTGGTGC
AGCTATATCACAGTTGTGAAATTAACATGGAGAACCCTGATCTGTTGCCT
TTTAAAGTTGGACAGTTGGCTGAGGCAAAGTCTTTTGAGAAGGGTTATCG
TGGTGCATGGTTTAGATGCAAGGTATCGTCCAACTTAGTTATATCTTATA
GCTGACTTAAATGATCAAAGCACCCCTATTCCAGCTCTTATGAGTTTCCT
ATATTCCTATATGTTATCTGTTGGCCTTTTTTTTTTTTCATGTGGGAACC
AGGATTACCAGAAACAATATTAAGTTACGTCATACTTGCCGTTATAATGA
TATATACACATTTAATGTATGTGTAATAGTTTGTACTATTTTATGGTGTC
TGTCAGCCCAGGCAATCCTGCCTAAGAAGTAGGGCAGGCCCTAGGTGCCA
AATAGTTTGATTCTCTTCATAGAATGAGTTTTTGCTATTTTTTTTTCCTT
TCAGGCTTGACCACTTGAGAAAAGCATATTTACATTCAAGTTTTTTGTTA
TAATTTTTTTAGTAAAAATTTGCATATCGTGTCATTTTAGTGAGTAAAAC
GTTGCAACATTTGTGTTGGGGCTAAGTTTTGTTGCAAGTTGTTGGTGATC
CAAGAAAATTGATGCTAATACTGATGTACAGTGAGTATCATCTAATGATT
ATAACATGTTACGTTGATTTTAAGAACACGACCACATGATAGATCATTAG
CGGCTCTCAGATTAGTTGAAAAAAGAGTGAGGCAGTCTGAGGTGATAAGG
TCTCTCAAAGCTTGAGTCACGAAGTGATGATGAGAAGGTGAGCTCATGTA
AAGCAATGAGAACCCTAATTTCCTTAGTATACTCTTATATATTACAATAA
AATAAAAGTAATAAAGTACGTATCATAAGTTTTAGAACTCCAAAGATATT
AAATTATTGACATACTTCTTTAATTCCCGTATCACAAGTTTTAGAATTCC
AAAGATATTAAATTATTGTCATAGTTCTTTGATTCCTGTAATAGCTGGAA
CCTAAGGCCTGACTAGAACTCATCTTCGTCCTCATCGGGATTATCCAGAA
GTACATCGGGAACTAATCTTCGTCCTCATCGGGATCATCCAAAAGTACAT
CAGGATCTCTCTCTCTCCCTCCCCCCCTCCCCCTCCCTCTCTCTCCCCCG
TAATTTCTTATGGAGTTTATGACTCACTCCTAATTTGTGATATCCCTTCA
TCCCTCTCTCTCGCTCTCTCTCGCCCCCTCCTAATATTTTCTGGAGTTTA
TAGCTCACTCCTAATTTGTGATGTCAAAATCTCTTAGTTCCCCTACTATG
GTTTTTTGATGAATGATATGGGAGAACAATGGCTAGAGTGAAATTTAGCG
CTCCAATAAATTTTAATACAATTGCTAATATTTTTTCTCTAAATTTTATT
GTTATTAAATTCTTAAACATTCTATGTTCTTTTTTTTACTTTTGCTCTCC
ACACATTAAGTGCATAATTTGTTTTCATTTGTCAGATACATGAGATATAT
GTGAAGAACGGCCACATTTGGCATGCACTGGAATATATTGATTTCCCAGA
TGAAAAAAAGAGTAAGTAACCTGTCTGCTGATATTATTTTCTTATAATCA
TATTATCTTCTTATTCCACATGATTACTTGTATGCATCATATGCCCACTT
TGGTCAGTCAGGGTTTGGTCAAGAGGTGTAATTTTTAGGAATTTTTTACT
TTAGGTCATGGAATTATTATTTGTCAAAGCTTATGCATGAATATCGCTAT
CCTCAATATAAAGTTAACAAAATTAACAAAAGACAAATTAGGAGAAAGTA
GGATTATTTACATGGACACAAGTAACCTTCGTAATCAATTCAGAGAATAC
CAGTCAATGATTATAACTTATGAATCCTTGAAACTGTATCAAATTAATGG
GGGCATCTTACATGCCCACCGGGTGTGTAGCGGTGCTCTGGATCAAATAA
CCTATTTAACAAGCTTCACTTATGTGATACGGACAAGCCTCCTTTACATG
TAAAACCTACTTTACATGTAGGAGGTCTCATGGCGCATTCAAAATCATTT
ATTTATCAAGCCACTAGGAAATCAATTTAAAAGTTTAATTTTTATTTTTT
TTTGAATCTAGGGTTCGGTTTTAGGGTTTAGATTAAAGAATAATTGAGAA
AGCTTTTGGTGAGTGAGAAAGCTTTTGGTGAGTGGGTGTAAATCTCTGAG
AGGTGCTTTATGTAAGAGAAATTTTGGGAGTTGAGTAATCACTTACACTG
ACTAATCTGTGATTGTTTGGAATCATAGGCAATGGGATTCTCTACATATT
TGCTTCATTTATGCTCTGTGAGGGTAGTGGAAACAAACCATGAATGTTTA
GAGTTCACACAGGGAATCCGCGGGGACCTTTGTTTAAATAAAAGATTACA
CTCAACAAATCATGTTATGCGTTCTTTCATAATCCCCATTCACTGGATGA
CACCCTTTATATACTATCATCTAAAATGACTCGTATTCAAGTAATTTATT
GTTTTGTATCATTCATAAACTGCAATATTGTGTTGATTGTGCACCTCTTT
TCCACGTTTTGTTTTTTTTACTTTCTAGCTTAATGCAAAATTGCTGGCAG
AGGTGCTACTTATTAATTATAAGCTATGCCATTACTTTTTACTTGAATAT
AAAATAAAAGTTACCACTTTCCTGATGTTTATTATGGAGAGTAGCGAGCA
TATCTTGCACATATACTCCTCAAGTTACCTGAACTGCTTTTGTACAGAGG
TCAAGAAGTTAAAGATCTACCAATTGTCAGTTTGGATAAAGATGAAGGGA
AAGGAGAAAGAAAGGCAACTAATGGTGCGCCCACAGTATCCTCGTACGTG
CGAAGAAATCAATTTACCTCTTGTCAAGGGGATCACAGAAGTAAGTATAG
GAACGGATGATGTCTGGAAAGTGGGTGATATGGTAGATTGGTTGACTGAT
GGCTGTTTTTGGACCGGAAGACTAACCGAAGTTCTTAATGATGGAAAAGC
TGTGGTATGACTGCTAAATTGCTAAACCATATCAAAAGCTAAATTCTTTC
AATATCAAAATTTCTACAAAACATCGCCTGGGACTTGTCAAGATCCAGTA
AGCTGACTACCTTTGTTATAAATACCGAAATTATCATAGCAAAGTTTTAT
TGTTGATGCAAGAAGCCTTCAACTCCTATTTAATGGCTGGAGCGCTATTT
ACTAAAATGAGGTGCACCAGTAGAAGTAAACAAATTATTGGAGTATATAT
ATTCAATGCCTCCTTATGATTGCAAATTTGAGACATGCACCTCATAAAGG
GCCCTGATGTGCTAAAGCTGAGATAGTATGTTTGTTTCAGCAAGGCATGA
CATTAACAAATTAAATTATAAAGATTTTGCACTACAAACTACTTTCCCAA
AGATTTTGTTCATATCAATTAATGTATTGCTTTTGTATCAATGAATATTA
TATAGTAAAATTATATATTTATTGATGTATTTCTTTAATCTTGGAACTGT
AATGTTCAAATTTACTAGGTTACGTTAATACCACCTCCTGTGGGTGAAGG
CAGAACCTATATCGTCTCTTGCAAGGATTTACGCCCATCTTTAGATTGGT
CTCCGGAAAGCAGTTGGAGAGCTCCTAGTTTGCAGGTAGTTTCTTCCGTG
CGTTATATTTTCTTTTTATACACTGTTCCTCGAATAGATGCTTTCATGTT
GCTGGGGCAACATAAGGATCTGCAGACATTAGCTTCTACCTAGCATAAGA
GTTTGAGAGTGTATACAGGAATCATACTGATACGAATAAAACTTGCTAAC
TCCATATAGATAGTGTCATATGCCGCCTTAATATTGTATCATTACGTATT
TTTAAGAATTCGATTAATGACATGTGATATGTTCACTATTTGTAAGCTAA
TATGCCAAATATTTATGCCCATGTTTATTAGTGTCTCACATATGGTTAAT
TTTCTATGCTAAACACAGATTTTTCTGACACAAATCTATACTATATTATA
AAAGCTGAAACATTAAAAGTTGAGTCGGTCGGTCGGATTTTTTGGGCCTA
CAGGCCTCCCTTTAATGAGTCCTTTAATTATAATTAAATATGTTCAAGCA
TTCTCATTAAACATATCTATTCGGGCCAATTTTTAATTACCCTTTTGACG
GGCGTAATACTATTAAGAACTTATTCAACATGTTAATAAAAAACTTATTT
AACACATTCAATAAAAATATATTGACCCAAACACCTTTACATATTATTTA
AAAAACCTATTTTACTTGAAAAACGCATATTATTCCAACATAATTTTATT
GGGTCAATTTGTAATTAGGCTTTTGACGGGTTTGACTATTAAGAACTTAT
TCAACATGTTGACTTAAAAACTTATTTAGCACACCCAATAAGAATATATT
AACTCAAACACATTTATTAATTATTTAAGAAATCTATTTTACTCTAAAAA
CACAGATCATTTTAACATAATTTTATCTTTCACAATAAAAATAAATATTA
CAATATATACGATAACATAGTAAATATTATAAATAAACCGTGCGTGGACG
GGTTATAAGCTAGTATTTTTGTTTTACAAGTTACATTATATATATTTATA
ATAAAAAAATAATATGCTTTACTATGATTACTTTATAAGACATTTTAGGA
TCATTGGTTTTTTGTTTTTGTTTTTTCAACTTAAATTATATTTATATAGT
ACATTGATACTTGTATGCTTACTCATCCATTTTATGTGTTTCCTGTCCTT
TGTTGGCTTTTGCAAGTCTGTTTAACCGGGGTGGTGGTAATCTTATTTAT
TTTCAGCTGTGCACCTGGGCTTGATGTTATCTCTGTTTGACATTTTTTCT
TACTATCTTACTTTTTTCTAGTTTTAACTTATCTATGAGCATTAAATATT
TGCGAAGCAGTCTAGTTGTGTTATTGTATGACCTAACTTATTCCTGGTGT
ATGTTACAGGAAGGTGAAAGTTACAGTTATTCTCGCCTTATGCAACAGCT
GAAGCAAGGTAACACCAGTAGCTTTTATGGTTAAATATTAGCACTGTTCA
AACTTCAAAATAACCATGGTAGGAGAAGTGTCAGAAGACTGCCCAATTGT
TGCTACTTAACAAGTAAAGATTTGGTAGAACTAGTTCTGTATTTAATTAT
TGTTCACCACTAAATTTTTAGTAGCTGTTTCTAACTTAAGAGGACAGGGA
TATTGCGAGGGCTTGCAAGAACATGCATTGCACTTGTCTAGAAATTTTAA
TTGGTTCAAAACATAATTCGATGTGTCGGAAATCTTGTTTATAATGTATA
ATGGAGAGAGTGTGAATGATGTAGATAAAATAGGAGAGCCTGAAATAATC
AATCAATGAGGGCAGAAGTTATAATTATTGTCATTTCTAGTTCTCATTGT
ATAACCCTGAAGTTGTACCAGTTATATATGATGTAATGATAGTCGAGTAT
ACATATGATAAAATAAAGAACTGGCTGGGAGGGTTTCCTCGGCAGTTTTC
CGGAGGTTAAAGATCTTGCAATACAATTTGAAAGGGCAAATTCGTAAATA
CAGCCCCCTCGGTATTCACAAAAATACTCTTGATCTCACACTTATAAATG
TTTTAACGTAAGGTTTTTATACTTGAGGGCACCCTCATGCCGAGCAATCC
CAATAAAATAGAAGTATTATAAATGACCTATATTCCTTGGAGGCCTCAAA
TTGTTTGACAGGGTCAAGTATTTGGATGCAACATAGATGATTGGACACCT
ATGTTGTGTCAGAAGTCAGCGTGGGAGAAAATTGTTAAGGTAGAGATGTA
GAGTCCGCATAACATAGACTTGTGAAGTTTAGGGCTCATATACTTTGAAT
TAGGACAATTAAGGAGCCAGAGATAAGATATATATATCTGTGTGTGTGTG
TGTGTGTGTGTGCAGTATATATATATATTTGCTTTTGCTCAAATGAAAAC
CAAAATTACAGTAAAAACTAGAAACTAATTTTAATCATTCATTTTAAATA
TAGCACATCTAATCCGAACCAAACCCCAACCTCCCTATTTCAGAGCACCT
TACCTAAAAACACTCTCCTCTGTCATACTTTACTTCTCTTCTAAGGTGAG
CTCATCACCGGCATATTCTTGTCAAACCGCATCTAACACTCCAGCACTCT
CCCACCCTGGTGAGTTCATCTTACCCGACGACGAGCTCATCACTGACATA
TTCTCGTCAGTACCTCATCTAGCACTCCCCTGATCCTCCTTCCCCCTTTT
ACCACACCATTTTTTTTATAGTCATCGTCATCGGAGTCTCACTAGCACTA
GACAGCGAACTCCATTTCTGACACGTATGTATATTGAACCACCCTTGCAG
TTAGTAGCCCGGTGATGGATTCTTGAACCAGCCTTACAATTAGTAGCCTG
GCTATGAATTCTCACAGTGTTTTAGAATTGAAATACCTTGTTTTGTGAAT
CACGTAGTCGTTAAAGCTGTAGTACTTTGTGTACATGAGCGTGGGATTTC
TGTCATGCCAATTGAGGATCTTTACTATGTTTTTAGTAATGCAAATTTTG
GATCATGTGTAAATTCTAGATCTTATGATTTTTATTGGGAGTAATGGATG
TTGGTTGGTGTCAATCGAGGATGTGGAAGAGAGTGGTTGGAAATAATGGC
AATCGAGGATCTTATGGTTGGTTCATGAACTGTTTGAATTCAAGTCTTAA
GAATGCGATTTATGGATTGTTTTACTCTACGGAATGCCGAGTCATAATGA
GACACATTTAAGTCTGGATTCAGAGTTTTGTTTTTCTTGGACTTGATCGG
TACTATGAGCTATAAGCAGCGACTTCTGTAATATCTGAAATCGGGAAATT
TGCTTATGTTTGAATGCTAACAAGTCCATCTTTTCTGCCTTTATGAATCA
AGGCGGCTTAGACATTGGGGCTTAGACATTAGGTCTGTGAGTTGAAGCCA
TATTGTTTTCCTCCTCTTACTTTGTAATTGCACTGTGTTTGATGCTTTTA
GCACCGGTAGTGTTCTAAGTTATAACTCTATGCAAAATAATAACTGTTGT
GATTGCCAGCTCTTAAAGCATGTATTGTGAAGTATGTGGCATATAATTGT
ATTGTTTACCTGATTACCTTTTCAGGAATAAAAAACACCGATACACCTGC
TGCGGGACATATGAAATGTGACATCGATTACAAGGATGAAGGATCAAAGG
ATTTTGTCGATAAAACTGTATCACCAGTTGATGGTTCGATCTCTTCTAAT
AATTCAGCAAACTCTTTACACACTGCCGAAAAATCTGGCAGCGGGAAACT
GAGGGACATGTCAAGAGCATCTGGGAGCATTGTACCCAGGACACGTAGAC
TTGAGGACTTGGACATGAGGGATAGTGTTGTTGAGAAACCAAGTCTATCA
GATAGTGTTTCTAGTTCACATATTAAATGTGCTTCTAATGAGACTGCTGT
CCACACTGGCACTGAAGACTTAGATAATTCTGAGGGAGCGGTGAAGAAGG
TTAAAACTGGCGGGAGTCCTCCTTTGAATATCGCGGTCTCTAACTCACTG
GATGCTGTGATTATGGATTTAGAAGAACTTGCAAACAAGATTCAGTGGCT
GAAGGGCTTTTTAGATTTTGGAATTCCTTTGCCAAATGGTACGACGCCTT
CATGGAAGCTTGTGGAACACCGAGGATCTTCCACACCAAAATGACTGCTT
TCCAGAAAAAGCAAATGTAAGTTTGCATACTTGATATTGTACAACACAAT
CTTCAATCAAGCATGGGTTCATTATCTTTTAGATTTGCTATTATTTCCTG
AGAGCGACCAAATTTGGTGGAATGCAATATAGAATCTTGAAGTTGTATTA
GTTGCACACTGGTTCTGGTTAAGTGCATTTCATTTGACTTCTGATGCATA
TACAAGTCTAGTACGGTCTATGTGTACCTTCTACAAGTATTTGCTGTTTA
CATTGCATTTATTTTCAGTTCATTTTGCTGCTGCTGCTTGAACAAGTGCC
ACGTTTATAGTTAATTACTTGGTTTTTGCACTGAAAAGTGCAGTTTCACA
AATTGCAAAAGCAGCGGATGTTCAAAAGTACGTGATTTGATGAAGCTGAA
AATGTTGCGTGGTGGTGTTTTCGTGATATAATTGCTTTACATGTTGAATT
GCTGGTACAATCTGTTTAGTTTACCTTTTAGAAAGGAAAGTACTTTGCTT
GTAGTATAATGGTAAATACTCCCTCCATCCCAATTTATTTGTCTTGTTTG
ACTTTTTATGGTCAAATTGACCAAATTTTGACCGATAATTAGTAATTATT
CTTACATGATTCTGAAAATTGGAAAAACACATTTTAAAGTAGAATAGATA
TAGATTCTAGTAATATGTTTTTTATAAATTATTTAATATATGTAAATTAC
AGTCAAAGTTTGGTCAATTTGACCATGAAAAGTCAAACAAGACAAATAAA
TTGGGACGGAGGGAGTAGATACCAAGCCAAACATATCCAGAGTATCCCGC
TTAGAGTAGGGTCTTGGAGGGTAAAATGTAAGGGTAACACTGAAAGAGTA
GGGAGGTTGTTTCTGTGAAGACCCCAACTAAGGGCAAGACAATATAACTA
AGGGCTAGACAAAGTATTGTGTGACATATATCTAAATAGTATCTTGGCCC
ATGATTTTCTTTACATGGGACTTACCTTTGTTGTGAAATTCTTCGTCATT
GAATGATGTGAGTCTTTTCATCAAACCAAAGTGCCATAACCCTCAAAACC
GGATCAACGAGTCTTTTCTTCAAACCAAAGTGCTGTAACCCTCAAAACAG
GATCAACAAGGGCCATGAGTTTCTTTAGAGTGAACTGACCCTTTATAAAC
CATGAGAATTGAGCCATGAGTTTCTTTAGAGTGAATTGACCCTCTGTATA
GACTAAACCATGAGACTAAGACTCAACCACTCTAATACGCCGTCTCCGAT
CATTCTTGTCTAATGTCATATCATGTCATATCACTCGTGAGATTTAAGTC
TCCGAGGTCTAAACTTAATTGATCAACCCACATTCCACAGGGCTGACTTC
TTTTTCTCTTGCCTCGTACTAATATGTTTTCAACCTTTCTAACCGGGACC
AAGTTACATTTGCGTCGAACGTGTCCATACCAATGTTAACGCCCCTCTCT
TATCTTTTTAGAAATAGACTCAACATTAAAAGGTGTCGCAAAGTAACATT
CGGTATATGATCTGTCATGGTGCTACCACAAATCTAACGCAACATACGCA
TTTCTACTGTCTCTAGCCTACGCTTTTGAACCTTTCTTAATGCTTAGCAC
TCAGAACCATATAGTAATGACGGTCTGATTGTGAATCAATAGAATTTACC
CTTCAACCTAAAAGTTATATTTTCATCACGCAACATGCTATAGTAGTAAC
ATCCAGCGAAGCCATCTTGCCGAAATACAATGCGTCACATTCGTAGAAAT
ATCACCATTACTCTAGGTGATAGAGTGCAAGTACTTAAAGGTATTAGTTT
GTGGTACACAGGCCTCAGCAATACATACAACTACATCATCCTCATGAATC
TCTTTGCTGAAATTGGCAAAAAGGTACTCAATTTTGGAACGGTTTAGACG
CAATTCGTAAACCTCCAACAATGCATGCTACTGTTATAAGTTTGCATCAA
CCTCGTTTCGAGACTCAACGATTAAGGCAATATCATCAGCAGAAATCATA
CACCAAGGCACAAGAGGTTGAATGTCCTGGGTAATCACATCCAAAACAAC
CACTCCCTCCGTCCCACCCAAATGTTTACATTTGGGTTGAGCATGGAGGT
TAAGAAAATAGGTAAACTAATGGTGAAAGAGTTAAAAAAGTGAAGATAGT
GGTGGAACCGATTGATATATAATGTATAAAGTATAGTGGAGAAAAGTGAT
GGTGTTAGTTGATTTTTATATTATAAATTTACTATATTTGGTAAGTTTTG
AAACATAAAGATTTGGACGGGACATCCCAAAAAAGAAAGTGTAAAGAAAT
GGTTGAGAAAGAGGGAATATAATTACAAAGGGCGTAATACCGACCCTTGA
TGAAGTCCGGTCTCAATTGAAAAATACCGAGTATTTCCAACCGGTGTCCT
AACACATGTTCCCATCGCTGAACAAATATCTTGGATGGTTCGAATATATA
CCGACGGAATCTCTCTCGCTCGTAAACACCCGTGATACATTATCATAACC
CTTTTCAAGGTCTATAAACACCATATGAAGATCTTTACGATGCTCTCGAT
ATTTCTCCACAAGGCAACGAATGAGATAAATCGCCCCAATGGTTGGCCGC
CTTGGCATAAAACCAAATTGATTTGCTGAAATGGTAACAATTCGTCTAAT
CCTGCACTCAATAACTCGTTCCCGGACTTTCATCGTATGACTAAGCAACT
TAATACTCCCCTCATCCCTTTTTAGTTGTTCACTTTTAACTTTTAATGGT
CAAATTGACCATTTTTTGACCAAAGTTTCAGGACAATTCTTTTATTATTT
AAAAAAAACTAATAATTACATTTTAAAATAGATTTTATGTATTTTATAAT
GATATAATTTTTTAATATTTTTTCAATTGTATTATATATATGAAGTTCAG
TCAAAATGTGGTCAATTTGACCATTGAAAGTCAAAACTAGACAACTAAAA
AGGGACGGAGAGAGTAACACGATAGTTACTAGAACTTTGGGCATCACCTT
TATTTTCATAGATAGGTACAACACTTAACCGCCACTCACTCGACATCTTG
GTTGTTTGAAGTATAACATTAAAAAGAGCCTTCAACCGTCGTACACCCTG
TTTAGTCATATACTGCCACACGTTAATTGGAATCTGATGTAGCGCAAATG
TCTTACCTTTACCCATCACGCATAAGGTTGTGCACAGCTCTGCTTGTGGA
ACATGCAAAATAAAGAAAGACGCAAGCTCAAATGTAGTATGCTTGCAAAA
TGAATATTGAACTTTTCACTTGTCTTTCTCCAATTGATTCTCATATTTTC
ATACAATGTCAACACTTCGAGTCATCTTTAACTATGACCCAATGCCAACA
TTTCGAGTCATCTTTTACTATGGCCCAAGTGGTTAATTTCTAAGGAGAAT
TTAATCGAACACCTAACAAACGTTGAAAATGGTATTTAAAATTTAGCATA
AATGCTAAATATTTAAGACGATGCTATCAAAGAAAAAGTGTTGACATAGA
GAGAGATGAAGAGAGAGGGTCGAGAGAAGTAGAGTTGGCTATTTTAGTTT
TTTATACTTTTGCAAGTTTTTCATTTTTTAGTGCGAGTTTCCGCGAGTAA
TCGCAATATAAGCGTGATTTTTAGCCAATTTCATAATTGCGCTAAATCGC
TCAAATCACGGAACCTTCGCCTACTTGCGAAGCGCAATTAATCGCAATTT
TAACACCACTCCTATGCTACAGTAATATCTTGAATCATACCAATATCATT
GTAAACGATCTTTTGTTCTAATACAATGTCCCTCCTTCAAGTTGCGTTAA
ATAACTCTGAAAATTACCAACCTCATCTCGCTGTAATATCCTCAAAATAC
CGACCTCATCTCGCTGTAATATCCTCATCATGAATTAAAACATGGTCACC
CTCATCATTAATAAGATGATTTTTGTTATTTACATCATTACATGTATGTT
TACATTTGTGCTTATCCCTGCTCAGTACTTGTCATCTAAATAATAAATCA
TAAACTTCATGTGCTTCGCAGATACTATGCTTTTATCTTTGCAAAAACAC
ATCTTTTGGTTGTCACAGGGTTATCATTTGAAGTGTTCTCTGCAGCCATA
GTGCGATCTTGCTATATGTTTTTAAAATGACTGTTATTGTCACTGTGTAT
GGAAATTATTCATATTCTTCTTGTTGACACCCCCCCCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCCCCCCCCCCTAGCTG
GAACTTTGTCCCTGTTCAATTTGAAAAATAATTTTAGCAAGTTTTTAGGT
AATTGATGACAGGTTTTGATTATTTGCTTTCTTTGACATCTAGAATCTTC
CTCTCATGATGTTTGATTGCAGATAGATGGTGAAGATCTATTTTGTATGC
CCATGTCAACTATCATATCTGCATCATGTTCAGGGGTAATAGCATAAATT
TTCCTTTTGCTCTGCATATTGCATTACTGCTTACACAGTAGTTTTTTAAA
TTGTTAATATGTTTAAATTTCAGGCAGACTCAAGTTTAAAGAGATGGATC
TGTAATTGGTCGCATTGGTAGACCTGCTGAATATATCCAAAGGAAATTGG
GAATTGTTTGGGCTGCTAGCATAGTATAGCTTGTTCTGTTGAACCTATGG
CTGAAGCTTTTGACAAAATACGGTGATATTGCTTTTCCTCAAGGCTCGAG
AAAAAGCAAAGGAAGAGTTGAAACAACTTGATATGCATACATGTATTGTA
ACAGTTAAAGGTCTGTACATATAATTAACGCGTTACTCGATTGTTCACTG
CAAGCTTGTTATATTCTAGTCCAATTTTCGCGCAGGTTGGTATGTGCGTA
CGGCATTCAAATTTGATAAATAAAACCCAAGTTCAGTGTACAAATGCTGA
AACACACAAGAGAACTCCCGAAAAAATAAATTCATGGAATAGGCTAAAGC
AAAGCTTAGAACCAACTCCAGTGCACTGCTTGTATAGTAATATTATGTAG
TCTACCAGAGTAGAATTGCTCTGAAAGATCCACATATTGAAACTTAAAAC
TAAAACAAAGACGATTGAATGAAGAAACTGATGCCTTCTCTTGAGCGAAA
TGGAAAATGT
Sequence Length:
14360
Sequence Checksum:
2c9194cc43628ad44cc29f630a087d51
View location in JBrowse:
Cds:
>DCAR_027287cds ATGGAGAACCCTGATCTGTTGCCTTTTAAAGTTGGACAGTTGGCTGAGGC AAAGTCTTTTGAGAAGGGTTATCGTGGTGCATGGTTTAGATGCAAGATAC ATGAGATATATGTGAAGAACGGCCACATTTGGCATGCACTGGAATATATT GATTTCCCAGATGAAAAAAAGAAGGTCAAGAAGTTAAAGATCTACCAATT GTCAGTTTGGATAAAGATGAAGGGAAAGGAGAAAGAAAGGCAACTAATGG TGCGCCCACAGTATCCTCGTACGTGCGAAGAAATCAATTTACCTCTTGTC AAGGGGATCACAGAAGTAAGTATAGGAACGGATGATGTCTGGAAAGTGGG TGATATGGTAGATTGGTTGACTGATGGCTGTTTTTGGACCGGAAGACTAA CCGAAGTTCTTAATGATGGAAAAGCTGTGGTTACGTTAATACCACCTCCT GTGGGTGAAGGCAGAACCTATATCGTCTCTTGCAAGGATTTACGCCCATC TTTAGATTGGTCTCCGGAAAGCAGTTGGAGAGCTCCTAGTTTGCAGGAAG GTGAAAGTTACAGTTATTCTCGCCTTATGCAACAGCTGAAGCAAGGAATA AAAAACACCGATACACCTGCTGCGGGACATATGAAATGTGACATCGATTA CAAGGATGAAGGATCAAAGGATTTTGTCGATAAAACTGTATCACCAGTTG ATGGTTCGATCTCTTCTAATAATTCAGCAAACTCTTTACACACTGCCGAA AAATCTGGCAGCGGGAAACTGAGGGACATGTCAAGAGCATCTGGGAGCAT TGTACCCAGGACACGTAGACTTGAGGACTTGGACATGAGGGATAGTGTTG TTGAGAAACCAAGTCTATCAGATAGTGTTTCTAGTTCACATATTAAATGT GCTTCTAATGAGACTGCTGTCCACACTGGCACTGAAGACTTAGATAATTC TGAGGGAGCGGTGAAGAAGGTTAAAACTGGCGGGAGTCCTCCTTTGAATA TCGCGGTCTCTAACTCACTGGATGCTGTGATTATGGATTTAGAAGAACTT GCAAACAAGATTCAGTGGCTGAAGGGCTTTTTAGATTTTGGAATTCCTTT GCCAAATGGTACGACGCCTTCATGGAAGCTTGTGGAACACCGAGGATCTT CCACACCAAAATGA
Pep:
>DCAR_027287pep MENPDLLPFKVGQLAEAKSFEKGYRGAWFRCKIHEIYVKNGHIWHALEYI DFPDEKKKVKKLKIYQLSVWIKMKGKEKERQLMVRPQYPRTCEEINLPLV KGITEVSIGTDDVWKVGDMVDWLTDGCFWTGRLTEVLNDGKAVVTLIPPP VGEGRTYIVSCKDLRPSLDWSPESSWRAPSLQEGESYSYSRLMQQLKQGI KNTDTPAAGHMKCDIDYKDEGSKDFVDKTVSPVDGSISSNNSANSLHTAE KSGSGKLRDMSRASGSIVPRTRRLEDLDMRDSVVEKPSLSDSVSSSHIKC ASNETAVHTGTEDLDNSEGAVKKVKTGGSPPLNIAVSNSLDAVIMDLEEL ANKIQWLKGFLDFGIPLPNGTTPSWKLVEHRGSSTPK*