Resource Type:
Gene
Organism:
Name:
DCAR_027286
Identifier:
DCAR_027286.gene
Locus Tag:
DCAR_027286
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_027286, is a part of gene, DCAR_027286. |
| The genetic_marker, MK009847 8_24478093, is located in gene, DCAR_027286. |
| The genetic_marker, MK003436 K0880, is located in gene, DCAR_027286. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_027286 | DCAR_027286.mRNA | mRNA | DCARv2_Chr8:24466136..24478764 |
Sequence:
ATGGCTGGAACTGCAAGTGAGGATTCGGCAGTTGGAAGATCTTTTGAAGT
TAGTTTGGGTGGACAGCAGCATAGTCAAGCTACCAGTGAAGCATTAGCAG
AATGGCGGTCTTCTGAGCAAGTAGAAAATGGGTCCCCTTCAACTTCACCG
CCTTACTGGGACACGGATGATGATGATGATGGTGGTATGCTATTTTTTTG
TAATTATGTTTGTGCTTTTTATGTTGGCGATTCAAGTATGTGCAGGGAGA
AAAGAGTAATAAGTCTGTCTGGGTGATTTTTCATTTTTTCTTAGTTTGTT
GGTCCCCCATATTTTCCCTGTTGCATGTTTAAATTAAATTACTATGTTTC
TAACTGAACTGTGAAACTGGAGCTGGGAAGGTATTTCTGCTTTATGATCA
CTTCTCAAATTGTTTGTTCATACTTGTTGCATTTAAACCCCCTTCTGTGG
TACATACCTAATATGTTTTACTCAATTAATTAAGTTGTGGCATGATCCAT
CCTCTTTTTCTCTGCTTGAATATGTATATATGGTGACTAGCCAACTATAT
AGTGATATATTCTGTTCAAGCTTTGCAAAGTTTTTATCATAATATTTCCA
TAGGGAATTATATCCCTGGGTCATGTTATATTTAGCATACAAATTTGAAG
ATGCGCTATATAAACAAGTAAATATCGATAGAATATCCGACCAAGTACAG
ATAGATGTCAGTAACTCCAGATGATCTTCAGCATACAGCTAATGGGTCAA
TCTGACTGATTCATGCATGTGTTGATGACACTAGCATGTTTTGATTCTCC
AACTTAATGGCAATGGGTAGCTTAGCAGCTGAAGGGGTTCATGTTGATGC
AAAAACTTCAGACGTAATTAATGAAGATGGAGTAGAATATGTCTGCAATG
ATGTGAAGTGAGCACATCAGGCATTTGCAGGGAAAACAGAGAACTTTTTA
TCAGTCTGATGCTTGGTTTGTTATGCTGAAATTTGTAATAATTCACCGGT
GAATGGAGATAATTTATTTAATACATGAAAGCACATTAATCCTTGATGTG
ATTATGATAAGATATGTTTGAATCCCTTCCTCGTCCTTCCTCTCCTTCAG
ATGTCTTGCAGTTGCAAGGTGAAGAAAATGATACAGTTGCTCTGAACAAA
CAACCTAGCCTTGTGCGAAGGATATTATTTCCTTACCCTAAATTTCTTTT
GGCATATGATTTGGTTAAAGGTCAATACCGTGACACCAATACACAACAAT
GATATATGTGTGTGTGTGCATGTGTGTGTGTAATTCAGTCAGTAAGTTGG
TTTTTATAATACTCCATTCTTGTGTAGCTATTAAAAAAGTATGCCACTGA
CTACAGTATATATGTACGTGTTTGGTAATTTTAAGACAATATATTATTTA
GTTTTGTTATATTAGAAGTTTGGAATCATAATTAATAGCAAGGAATTAAA
TCGTTGTATATTAAAGTATATATTTCTTCTCAATATTCCGTTCTTGGCCT
TTTTTTGCCGCTTCTTTGTATCGTTGGCATACAAGGGACTTCTTTTAACA
ATATTACTGTGTTGGTCATACAATCTTACCATAGTTGTCCTGTTTGTATC
CTATGATAAACTGTTAAATTGATGAATCAAGGTATTTCCTAGCACTGAAA
GTAATGTTGTGTATTAGTTACATATTAAGAACCCTAATTACACATTGAGT
TAATCATTGATGCACCTGTATACACATTGAACTGAAAAATATTTGACCTT
TTCAGAGATCGTTACATGTCACGTACATTCCTCTTTTTTTGACATGTTTG
GTCCTTCGGATCTGAACTTATTGCCTTTAGTACTTCAAAAACGAATAACC
ACCTCTTCTTTTGAAAAGATAAGATGCCAGTGAACTTTATCAGGCCATAA
ATCCGTATTTTTAGATATTTGTACAAGTGGAAGTAATGAGCTGCTTCCTC
ATTTGTTGGCATTTTGTATGTGTTGGCTTTTTTGAAGGCCTCATATCTTT
GGATATGTGTAGGCATGCCTGATTGGTTAAAAGGTACGTTTCAAATCTGA
TCTTAAGAAAACAAAAGGCGAGGATGCCAAACTCCTTTAAAGCGTATTAT
CTTTTAAGTTCTATAGCAAATTTGGAAGGAGCATATACTGGATTGTTGTT
AGCAAATTCCTTCCTCATAAGCTGTTGATGATGGGGTTTTCAAATGTGCT
TTTAGTTTTGTTGTGAGGCTGTTCTTGTTGTTTTCATACTTTGAATTTTG
TTATTCTATTGAGTTTCCTCTTCGGCATTGTACATGAGCTATATATTACT
ACTTCTAGGCTTTGTAACTAGTTTACATTGATTTTTTTACCATTCATCAA
TCCCTTCATTGCGTTTCAGGGCCAAAACCTTCTGAGTTATATTATAAGTT
CACTTGGAAGATTGAGAAGTTTTCCCAAATTAACAAGAGAGAACTGAAAA
GTAATGCCTTTAAGGTTGGCGACTACAACTGGTAGGCCTTATTAGCACAT
ATATTTTGGCAAATTCGACTGCTGCTTTGTACTGTTATGATCTTAAAAAA
TGTATTTTTATATTAATTGGGTAAATTTTAAGAGTTGATGTTAACGAACT
TGTTTGTGCTCCTCATGAATTTTATATGTATGTGCTGTGCATGCTCTGCT
TATGGATGAGTGCTTCTCTGACTCATAAAATTACCGTGTACATAATTGTT
GTGATTACATGGATTCCGATACTTAACATGCATATTATTTCTTATGAATA
GTGTGTTAAGGTGTGCCTCAAGAACTGTACTTGTCGTAAAATGTACAACT
AATTTTGGAATGTAGACAATGCAGGCTTGTGTAATTTTATTTTGGGATAT
TCTCTTAAAGTTTTATATATAGACAGTGTAGGCTTGTGTGATTTACTTTT
GAGATGTTCCCGGCAATACGATGGTGGTTTTGACTTTTATCACTGGTACT
ATCTACTGATAGTATTGGGTTTTGCGAGAGGTACTGTTGAGAACACCCCA
TTGGAGATAAACATTAGAGAAATCATAGTGAAAAAAGACGATTAATGAGA
AGACTAAAAATAAGACAAATGAAGGTCAATATCCTAAATTGTTTGTTGCT
TTGAGAGATGAAGAATATTGAAGGAAGTTTCGCCTGATCTTACTTGTATT
TAATCAGTAATTGTTGATTAGTTTCTTGGTTTGTCAACACGAAGGGCCTA
AGACTTCCAAACTCAAAAGTTTAGGTGTACCATGAGTAAGTCAAAAAAAC
GACCTGGGAAAAGCCAATCTCACAATGGTGCCACTGAGAATATTCCTTGA
TTTTTTGATCCTTCTCAAGGAAGCCCGCCATAATATTGCTGCGGTGTGAA
TGAGGTGCTTAAGTGATGCATCGTTTAGACAAATGTTCCTTACACTTGAC
CTTTTTCTTTTCTTGTCGCTCTTCCTCTAACCAAAGATTCTCTTTGCAGC
AGTGTATAGGAATTTTATGTATCAGTTACACTTTGTCATGTCACTTCTCT
TAGTTAATGTGGATTTCCTTATATAACTGGAATCATTCTACATGGGATGT
CGTACTATCTTATGTGGTACGCTTTATTAAAATGATGTGATGTTACAGGC
CCTTGGCTTAATTGCATATATTATGGCAGGTACATATTGATTTACCCTCA
AGGCTGTGATGTATGCAACCATCTCTCGTTATTTCTCTGTGTTGCCAATC
ATGACAAGCTTCTTCCTGGTATGATAATGCAAGTGGTGTTTTTTCATGCC
ATAGTAATAAATAGATAATTTTATATATACTGTTACTGTTAAAACAGGAT
GGAGTCACTTTGCACAGTTTACAATTGCTGTTGTTAATAAAGATCCGAAG
AAATCCAAGTATTCTGGTAAGTTGTTACTTTATTATGTACAGTTTTATGT
TCAGATTATAACAACTCATTTGCTGATTATGGTTTTCAACTTTATCACTG
TATTCAACTTCTGGAGATACATTGCATCGATTTTGGAAGAAGGAGCATGA
TTGGGGATGGAAAAAGTTTATGGAGCTATCAAAAGTGTTGGATGGATTTA
TTGATGCAGACACTCTTATAATCAAAGCTCAAGTGCAAGTTATCAGGTTT
AACACTGTTTTTAAATGTTCACTGACATGCTCCTTTTTTTTCCAAAGTTG
TTAACTCACCTAGTTAATTGGCTGTTCATCGTTATAATATATTTTCAATG
GCCACTGTATTCTAGTATCTTCTTTCTGCCATATGATATTGAGATGCTGA
TGAATCACGTGTATGTCAAACCATTCTCATGCTTGCAGAGTTGCAGTTAG
TATCTAAGGGCAAATAGCATGCATGGTAAAGAAAATACTCACCTTGTATG
AATAATTTTTTTTGAACATTGAATTACCAATATATGATGATTTTAAATAT
AAAGCAATTCTTCAGGAATCCCCACTCAGTGTTGGGCAGAATATACTCTC
TCTGTACCCCAATCTGTACCGAATATGAACTACTTGGCTTGATAATGGTT
TTTACCAATGGGGTCAAACTTGGTCAAATCGGGTCTACTTGGTACAAACT
TGGATATTGGAGTTTTTAAACTATATATATCTCCTGGTACACTTTATTTA
GTTTTGCCACCGTTAAGAATTTTTTTCGTTCTCGTGTTTGTAGATATTTA
TGATTCATGGCTCAGATGCTGCTATAATGTTATCATATATATTTAATTTG
GTATCCTTGTATTCTCAAGTTCTTCAGTGTATTGTTATTTCGATGTTTTG
GTGATCCACTGATATTTTGAATTTTTTTTATCATTGGTTCCTGAAATGTC
TTTGGTTGTTCCTTAAGTATCTTTTGTATAAGTTACTGACTACAGCTTAC
TTCATTCTTATTTAGGGAGAGAGTTGATCGCCCATTTCGATGTCTTGATT
ATCAGTATAGGAGAGAACTTGTTCGAGTATATTTGACAAATGTAGAACAA
ATCTGCCGTCGTTTTGTGGAAGAGAGAAGAGGCAAGCTTGTAAGACTTTT
AGAGGATAAAGCCAGATGGTCCAGGTAGATGATGCTATATGTATTCAGTT
TATTTTGGAGAAGGAGACTTTTTCTCTTTGTTACTATCACTTCAATATTA
TCTGTCTATATTTTGATGAGCTTCTTAACTTTTGTGTTGTCAATCCTCTG
ATAGTTGTGGTTCATGATTTGGTTGTCATATGTTCTAATAAAAAAATGTG
ATCCCATTCAGCTTTTGTGCTTTCTGGCTGGGAATCGATCAGAATGCCAG
GCGTTGTATGTCGAGGGAGAAAACTGATTCAATGTTGAAAGTAGTTGTCA
AACATTTTTTTATAGAAAAGGAAGTCACATCTACTTTGGTTATGGATTCC
CTGTATAGTGGGCTAAAGGCCCTTGAAGGTCAGACCAAGAGCAAGGGAGG
AAAGGGAAAATCTTTAGAATTGGAAGAACCACCAGTCCCAATTGTTTGCA
TGGAGAAAGACACATTTATTTTAGTGGATGATGTCTTATTACTACTTGAG
AGGGCTGCCATGGAACCGTTGCCACCAAAGGATGACAAGGGTCCACAAAA
CCGTACCAAGGTCAGCAGTATGACATATTTTGTGTAATGATTTATGTTTC
TATTTTATTTATTTTATTTAGAGTTTGTTAGCTTGAATTACAAAGGGTAG
TAAAGTAAGTGTGATAAGTGTCCATATATCTCCGAATTGCAACTGCGCTT
AGGGTAAGGAATGAAGCCAACCGATTGGTGATTAACCTCAAGGCCTTGGT
AATTTTTGGAAGATCAGCACGTGCAGTATATGTATCTGCATATGTGTACT
TTCATAGTGAAAGTCAATTTGTGATGCTGGACAAGAGTTGAAAAGAAGAA
AAATTATAAGTAGATAGGTTTGGCTAGATTAACCGCAAAAAACCCAGTAG
TCTTAAGATGACTTAACTGCAGAACCTCTGGATCTCTATAGCACAAAAGA
GAGGAATTCTTTTGAATTGCAACCAATAACAAGGAAAAAAGAAAAATCTC
AATTTCAATATGAAGGTCTTCTTGTTTCCCATGTAGGAGTAAAGCTTAAC
CCACAAGGGTCCTAATAACAAGGGAACTACTAATAAAGAGAAAAAAAAAA
AAAATCCTTTTATTACTCAAATGTCTTCAACTAGAATGTTTGTAATACTC
TGTCGTAATATGATTGAAATCCTATTAGAATACAATCAATTTTATTCCTG
ATTAATAAAATTAAGTAAATTCAAAATAATTCGATAACTCCTTGTTCTGC
ATCATTATGAAAACAATGAGCAAAATATAAAGTAATATGGAAACTTGTGT
GTATTGTTGGTTTTATTAATATTTAATGCATTATGTTGTGACCTCGGTCC
AAGCTTAGTATTGCAGGTATTTAATATGTTCTAAGAGTTATATGTATATT
ACAACTTTATTCTCAATAACTTTAAACTCTTTAGTTCAAGTAGAAAGTCA
GCATGTAAGAAAATCATAACGTAAAGTTATCTCTGTCTATGAGAAGATGT
TAGTGTAGATTTATCCAGTGTTAACTAAGGCTTTGTGGTCATCTGCACTA
AGTTTGCAGGTTGAAATCATTTCTGCATGAAACTTTCCTTGCAACTTCAC
TCAGAAACAGAAAGGATGAAGATGGTGATTTTATTATTGAGGGGATTAAT
GGATTATATGCCAAATGATCCTATTTCTTTAAGAAGCAATTTAAGAAGTT
CTTAAGATTTTTTGCTTCCAGAGATCTGTTATCTTATGTTTCTCGTTATA
TCTAGGATTGGATATTGATATTAGAATTATGTATTTGACAGGATTATCTA
GTATGCTTTCTTTTACTTCATATTATATACAAAAGAAGGAAAAAGATTAT
CAGTTATGGGGCTGTTTGGTTAAAAAATTTCTTGCTCTTATAAGAGGCAG
ATAATTACCCCTATAGTTAAACAGGCCCAAGGACATTTTGATCTTGATGT
GGATGTTAGACCTTGTTAAGAGTACAGGTTTAATAGAGCTATATCCAAAA
AAATTAATGAGGAGTTAGAGGTCAAAAAGTAGGAAACATGGGTTCTGTGA
AAGAGAAATTAGAAATTTGAATGAAAAGATCACAGTAATATGGTTGCGAA
TTCTAGCTGGCTAATTACAGGTTTTTAATAGCTCTTGAGTGGGGACTGAA
GTTCTGAGTTTATAAACTCTGATTCATTTATCTGGAGTTAAAATAAAACA
AGTATTTGATTGTGCAATATATTTTAGCTATTTATAGGACTTTCTTTCTT
TCCCTTTCCTCTTATCTTAACAGGCTGGTTTCTATGTAGTAAATCTGGTA
CATAAAACTGAATGTCAGAGTTAGAGTAATCTTGTAATTTTGATTCTACA
AATGATGTGGAGAACGAAACGATTGTAGTAATCAAATTTTTGATATGATT
ATTTGAATATGGGTATATTTTTTACTTGAGCATTTTAATTAACTATATGA
AATATATTAATGTTATATATATGGCAATAGTTATCAATCAGGTTCTCTAA
AATGATTAGGATTAATTTTTTCTAGATGTAGTTATCATATGTTAATCAGA
TCAAAATTATATTAGCTGATAAATATTTAATAAGCTTAAGGTTTTTATTT
GTGTCTATGCCACTTACTTGAGGTTCAATCCCTTGTTTTCTGTCCATTAT
TAACCTTTACTGTCAATTAACTGAACAGAATTCATTCTGATTTGTGACTG
GATAGGATAATTTCTTGTAGCATATCACCCTCTTTTTCTTTCTATGTAAT
ATACTGGTTTGGACTGTCTGCTATTCCCCAATTCTTACCCTTTACATGTC
AGGATGGTGGTCCTGGGGAAGACTTCAGCAAAGATTCTATCGAGCGCGAA
GAAAGGCGCCTTACTGAACTTGGTCGCAGAACTATCGAAATCTTTGTGTT
AGCACATATTTTCAGGTACCTATTAGTAGTGGGAAGTTTCTCTTTGTTTC
TAAAGATCTATATTATATAATTCTATACGATCACTTTATTTTGGTTGTTG
AATATTATTTTCTGAGAGTATACATGTCTTTCAATCATTTTCATCTGCCC
GCGAAGGTGTAAACGTTGCTTGTTGTGTTGGATGTTAGCTTGTTGGTTAT
CTGTCAAAGGATTGTATTTGCTGGTCAGTCTCGGTAGCATTCTGTAGATA
AAATGTTACTATAAATTATCTTGTTACTATGAGTCGAATTAAAAACTGTA
AGTCTAAGGCTTATTATGTTATATCTATCTTGAAAGCTCACATCTCATTT
TTGTAATCCGATGTACAAATTTTCCAGTTCTTCAGTATGTCCCAATTTAA
AATGTCACGACATAATTTATTAATGCTCCAAACTTCACAAAAGAGAACCT
TGAACTTCTCACAGAATATAGTTGTATGTCAAACATTTATAATACCGAAC
TAACAATATGAATAGTCAGATACAGGGGCTGAACACACTAAAACAAACAA
ATAATATACTGATTAAATAAAACAATTACAAGCACACATTTACTCAAATC
TAATCTTCTACATGTGTGCACTATGAACTGTCTAATGCCTCTTAGTCATC
AGCGACAGTAATAGAAGGAAGTGCTCCAGTTTCGTGCTCCGCTTTCTTAG
GTGTTAAATACAGATTGCTTTGTCTTGCACACCGAAAAATCATAATCAAC
CTTCTTCAGGGTTTAGCGGAGTTCTTTAGGAAGAAAAATTGGTTTTTAGA
ATTTCAGCAGATAAAGGTAAAGGGTTATCAGGTAGAAGGTAATAAACTAT
CTCAACTGATTTAATCCTTCTTTCTATGTAAATGTATATGCATTTGAAAC
TTAGGCCTAGTCTGGAGTTCTTTGATGATGGTTTGCTCTAACTTTTGATA
TGGGACACTTAGTCGTATTATTAGTGCTTGATAAACATTTATATGCTTTT
CTTACTTGATCTTCAAGCCTTTTTTCTCTATTTTACAGCAGTAAAATTGA
AGTCGCATACCAAGAGGCTGTTGCTTTGAAGAGGCAAGAGGAGCTCATAC
GTGAAGAAGAGGCAGCCTGGATTGCTGAAAATGAGCAGAAAACAAAGCGT
GGTGCAGCTGATAAAGAAAAAAAATCTAAGAAGAAACAGGTTTGACAATA
TTTTTACATTTAAAGAGTTTCAGCAGGACCACCTTCGGCTCATAAGATGA
AATATATATGGTCCATACATGATTATGTTTTGCTTCGTGTGCATGTAAAA
TTCAAACCCCATTCTGCTGATAGATATTTACTTAAATTAAATATTGCCTG
CTTGTAAAGTTGTATTCCTCATATATTTTCTCAGTGTGGGTAAAAAGTGA
ACAACATAAATGGGAAATAAGTACAACTCATTATATAAGTGCGCACTTTT
AGTTTTTCACAAACTTGAGAACTCTCTTTCCTTATAATCACTCACTCTTC
GTAACCAGTTAATGCTTGGTAGCTCGTAGTTTGTCTTGATATTTGGAGTA
TTGGTGGGTGGATTGTAAATCTGACAGTCTTTTTTAAAATGCATAAAATG
TTTAGACGCAAAATATTTATTCTTTTCCTACACTTCAGGGAAAACATAAG
AGAAATAATAATCGGAAAGGGAAGGACAAAGGGAAAGATGAAAAGCATGG
TATTGTCGTTGAAGATGAGGCTGAACTAGAAATCAAAGACGTCAGCAGAA
ATCAACTTTCATCTGAGGAACTAGTTGGGGATCCTGATCGAGTTGAAGAT
GTTTCTGATATCTCAGATTCTATAGATTGCGTTCCTGAACTACTTCATCC
TGATTCTGAAGATAGAGATTCTAGCGCTGTTAATTGGGATACCGACACCT
CAGAAGCTAATCCACCCACAGAAGCCAGTAGCAGTCGCGTGACTGATATC
TTAGCTGTACAAAATGGAGAAAAAAAGAGTTCAACGATAATGGATGATAG
TTCATCAACATGCTCGACTGACTCGCTGCACTCAGTTACTACTGTAAATG
GGAAGTACAAAGTGAACTCTTTCCAGAAACAGAAAATCCAAAAATCACCT
AGCAGGTAACCTATACTTTTTCTTCTTCTTTTAATGTTGTAAAACATGGC
ACTTCTTAAAATCAAATGCTTCAAAATTTTTTAGAGGTGAATACCAGCAA
GGTAGAGTGACTTACGAAGCAACAAGACTGGCCGTTGATAGCAATTCGTC
CGATGCTATATCTGATGGGAGGCAGTTACATGATGTATCTGAGAGCTGCA
AAGCTGTTGATTCTGAGGGTGCCTTCTTGCACTCGCCACAGCACCATGTG
CAATGGACTGAAATGCGTGCCACAAAGAAGGTATTTGATTGCTTTCTTGC
GTTTTATATTTTAAGCCATTCATGCCTTGCAATTTGCATATAGCTTACAA
CATTGATTATTGTTGCTTCTCTTTTTGTTAATGGTCAGGGACATTAAGTT
TGCTTTAGGATTGTTTGTGTGTGTGGTCTATTTTTACCCCCTTTGTCCTT
GTGTGTTTCAAATGATCAGTACAAAATTTTAAAAATTATTTGCAGAGACG
AGTAATCAGAGGAAACATACAAAAAACTGTATCCCTTCGCTTATTTGTTG
ACTGTATGTGTGCAGGGTCTGTTCTGGATCAACCAAAAACTCAAAGTAAA
AACTTTGAATCGCTAAGATTCAACAATATAATTTAGGTTGTGACAAAAAA
ATAAATAAATATAATTTAGGTTGTCAATTCTTCTTAATCACTGCCATATT
TTCAGTCGAGGGTTCACTGATCCCAACCTACGGTCTAGTTGCTTGTTCTC
ATCAATGTCACTCCATTTAAGTCATATCTCCCTCAAGTTTCCACCATTTC
CAACTTGGGGGTATGGCACATCTTAAAAATATGAAGATTTAGCATGTAGA
TTACTGTTGGATATTAGGCTGAATATACATGTTGTATTATGTGCATGGAT
GTAGATGCATTAGACTGCTAGCTTCTTGTTTCGTTCATAGAAATACAATT
CATTTGATCTTAAATTATATGGATCCTATGACATTGTTTTTTCATACCTT
TGTAATAACTCCAGGAGAAAGATAAATCTCTGCAAAGGAAATTGATGGAG
ACGGAGGATGTTGATGCAAAAAAGCCTGCTCAAGTGAGGACAACCGGATC
TTTATCCACTCCCAGAAGCCCTGCTAAGAACCTTCCGACCCCTGTTCGGT
TGAGATCTGAGTCACAAGCTACTGTTTCATTGAATCTTCCATCCCCTGTT
CGTTTGAGATCCGAGTTGCTAGTGACTTCAGCCAATGACACAGTCACGGT
TAGAAAGGCGTCCTCAGAAAGCCCCATACTAGCTGATCAAACAGCACCGA
TAAATTCAACCGAAACTGTAACGGAAGCTTATTCTCATAAAAATGCAAGT
CCAAGACCATTAAAAAAGTCCACGGCTTTGCATGTTCCCATCTCAACTGC
AAATTCGATAGCTCAGCAGGTTCCTGTTCCTACTGAAAAAGCTAAGGTAC
AACTGGAAGTTACAGCTGAAAGGCCCATATCTAAGGTCTCAGTTACAACT
GAGAAGCCCACAGTTCAACAAGTCATGTCCAGGCCTCTAAGTGCACCCTT
AGTTCCAGAATCCCGACCACCTGCTGCTGTTGTTTCTGTGGTTCAATCAG
CACCTGCATTGTCACGTTCAACCAGTGCAGCTGGTCGGTTGGGACCTGAA
CCATCGCCTGCCACTCCTAGTTATATTGCCCAGTCATATCGAAATGCAAT
GATAGGAAACCACGTCACTATGTGTTCAGCCAGTTACAGTCAGCCTCAGT
CTCCAAACGCAGCTGTTAACTCAACTCACTTGCACTCTCACTCACAGCCG
CCCTCCCTGCTCGCTCCATTATATTTTCCACAGACTTCTGAGAGGATTGA
ACCAAACTCAATCAGACCGGGCCTTTCATTTGGTATGGTTGGTCATGGTT
CTCGTGCAGATAATAGCAGCAGAAGCATTAACTTTGATCCTTCTATGCTG
AGTAACCTGCGGAACGGATCTCAGTGGACTAACAATCTGCGTAGTGATAG
CAGCAGAAACATCAACTATGATCTTTCTTTGCATAATGACATGCAAAACT
TTGATATTCACAATTCTATGCGGAGCAATCCTCGAGATCACTTCCCCATA
GAATATCCTGCTGGACCATCAGGGCGTCAATATCAAAATGTGCAGGCTGA
AGATTTTCCACATCTCGACATTATTAATGACCTGCTTGATGATGAATATG
GAATCGGGCTGGCAGCCGATGCAAGTTCAGGAGTTCAGAATTTTGTCAAC
GGACCTCACCATCTGAATCGGCAGTTCACTTTCCCAGGTGAAATTGGCAT
GTTGGGTGACCCTGGTCCCTCAAACAGCTCTTGCAGGTTTGAGCGAAGTC
ACAGTTATCACGATAATCAATTTCGTCATAACTACAACTCTGCAGGAGGT
CAGTTCAATTCTAATCTGAATCCTCAGGCTAATCTTCAGCCTTACCCAAA
TCTTCCAATTGATGGGTTAATACCACCGAATCAGTGGCAGATGGCCGCTA
CTGATTTATCTTACTCAAGTATGAGAAGACCACAGGACGATGGTTTGTCG
TATCACATTCCAAACTATTCAAACTTGGCATGTGGAGTTAATGGTAACAT
CCTGTTCCGCCCTTCAAATGGACGCTGA
Sequence Length:
12628
Sequence Checksum:
10b42f763ab4c21da5412f4b9f58979e
View location in JBrowse:
Cds:
>DCAR_027286cds ATGGCTGGAACTGCAAGTGAGGATTCGGCAGTTGGAAGATCTTTTGAAGT TAGTTTGGGTGGACAGCAGCATAGTCAAGCTACCAGTGAAGCATTAGCAG AATGGCGGTCTTCTGAGCAAGTAGAAAATGGGTCCCCTTCAACTTCACCG CCTTACTGGGACACGGATGATGATGATGATGGTGATGTCTTGCAGTTGCA AGGTGAAGAAAATGATACAGTTGCTCTGAACAAACAACCTAGCCTTGTGC GAAGGATATTATTTCCTTACCCTAAATTTCTTTTGGCATATGATTTGGTT AAAGGCCCTTGGCTTAATTGCATATATTATGGCAGGTACATATTGATTTA CCCTCAAGGCTGTGATGTATGCAACCATCTCTCGTTATTTCTCTGTGTTG CCAATCATGACAAGCTTCTTCCTGGATGGAGTCACTTTGCACAGTTTACA ATTGCTGTTGTTAATAAAGATCCGAAGAAATCCAAGTATTCTGATACATT GCATCGATTTTGGAAGAAGGAGCATGATTGGGGATGGAAAAAGTTTATGG AGCTATCAAAAGTGTTGGATGGATTTATTGATGCAGACACTCTTATAATC AAAGCTCAAGTGCAAGTTATCAGGGAGAGAGTTGATCGCCCATTTCGATG TCTTGATTATCAGTATAGGAGAGAACTTGTTCGAGTATATTTGACAAATG TAGAACAAATCTGCCGTCGTTTTGTGGAAGAGAGAAGAGGCAAGCTTGTA AGACTTTTAGAGGATAAAGCCAGATGGTCCAGCTTTTGTGCTTTCTGGCT GGGAATCGATCAGAATGCCAGGCGTTGTATGTCGAGGGAGAAAACTGATT CAATGTTGAAAGTAGTTGTCAAACATTTTTTTATAGAAAAGGAAGTCACA TCTACTTTGGTTATGGATTCCCTGTATAGTGGGCTAAAGGCCCTTGAAGG TCAGACCAAGAGCAAGGGAGGAAAGGGAAAATCTTTAGAATTGGAAGAAC CACCAGTCCCAATTGTTTGCATGGAGAAAGACACATTTATTTTAGTGGAT GATGTCTTATTACTACTTGAGAGGGCTGCCATGGAACCGTTGCCACCAAA GGATGACAAGGGTCCACAAAACCGTACCAAGGATGGTGGTCCTGGGGAAG ACTTCAGCAAAGATTCTATCGAGCGCGAAGAAAGGCGCCTTACTGAACTT GGTCGCAGAACTATCGAAATCTTTGTGTTAGCACATATTTTCAGCAGTAA AATTGAAGTCGCATACCAAGAGGCTGTTGCTTTGAAGAGGCAAGAGGAGC TCATACGTGAAGAAGAGGCAGCCTGGATTGCTGAAAATGAGCAGAAAACA AAGCGTGGTGCAGCTGATAAAGAAAAAAAATCTAAGAAGAAACAGGGAAA ACATAAGAGAAATAATAATCGGAAAGGGAAGGACAAAGGGAAAGATGAAA AGCATGGTATTGTCGTTGAAGATGAGGCTGAACTAGAAATCAAAGACGTC AGCAGAAATCAACTTTCATCTGAGGAACTAGTTGGGGATCCTGATCGAGT TGAAGATGTTTCTGATATCTCAGATTCTATAGATTGCGTTCCTGAACTAC TTCATCCTGATTCTGAAGATAGAGATTCTAGCGCTGTTAATTGGGATACC GACACCTCAGAAGCTAATCCACCCACAGAAGCCAGTAGCAGTCGCGTGAC TGATATCTTAGCTGTACAAAATGGAGAAAAAAAGAGTTCAACGATAATGG ATGATAGTTCATCAACATGCTCGACTGACTCGCTGCACTCAGTTACTACT GTAAATGGGAAGTACAAAGTGAACTCTTTCCAGAAACAGAAAATCCAAAA ATCACCTAGCAGAGGTGAATACCAGCAAGGTAGAGTGACTTACGAAGCAA CAAGACTGGCCGTTGATAGCAATTCGTCCGATGCTATATCTGATGGGAGG CAGTTACATGATGTATCTGAGAGCTGCAAAGCTGTTGATTCTGAGGGTGC CTTCTTGCACTCGCCACAGCACCATGTGCAATGGACTGAAATGCGTGCCA CAAAGAAGGAGAAAGATAAATCTCTGCAAAGGAAATTGATGGAGACGGAG GATGTTGATGCAAAAAAGCCTGCTCAAGTGAGGACAACCGGATCTTTATC CACTCCCAGAAGCCCTGCTAAGAACCTTCCGACCCCTGTTCGGTTGAGAT CTGAGTCACAAGCTACTGTTTCATTGAATCTTCCATCCCCTGTTCGTTTG AGATCCGAGTTGCTAGTGACTTCAGCCAATGACACAGTCACGGTTAGAAA GGCGTCCTCAGAAAGCCCCATACTAGCTGATCAAACAGCACCGATAAATT CAACCGAAACTGTAACGGAAGCTTATTCTCATAAAAATGCAAGTCCAAGA CCATTAAAAAAGTCCACGGCTTTGCATGTTCCCATCTCAACTGCAAATTC GATAGCTCAGCAGGTTCCTGTTCCTACTGAAAAAGCTAAGGTACAACTGG AAGTTACAGCTGAAAGGCCCATATCTAAGGTCTCAGTTACAACTGAGAAG CCCACAGTTCAACAAGTCATGTCCAGGCCTCTAAGTGCACCCTTAGTTCC AGAATCCCGACCACCTGCTGCTGTTGTTTCTGTGGTTCAATCAGCACCTG CATTGTCACGTTCAACCAGTGCAGCTGGTCGGTTGGGACCTGAACCATCG CCTGCCACTCCTAGTTATATTGCCCAGTCATATCGAAATGCAATGATAGG AAACCACGTCACTATGTGTTCAGCCAGTTACAGTCAGCCTCAGTCTCCAA ACGCAGCTGTTAACTCAACTCACTTGCACTCTCACTCACAGCCGCCCTCC CTGCTCGCTCCATTATATTTTCCACAGACTTCTGAGAGGATTGAACCAAA CTCAATCAGACCGGGCCTTTCATTTGGTATGGTTGGTCATGGTTCTCGTG CAGATAATAGCAGCAGAAGCATTAACTTTGATCCTTCTATGCTGAGTAAC CTGCGGAACGGATCTCAGTGGACTAACAATCTGCGTAGTGATAGCAGCAG AAACATCAACTATGATCTTTCTTTGCATAATGACATGCAAAACTTTGATA TTCACAATTCTATGCGGAGCAATCCTCGAGATCACTTCCCCATAGAATAT CCTGCTGGACCATCAGGGCGTCAATATCAAAATGTGCAGGCTGAAGATTT TCCACATCTCGACATTATTAATGACCTGCTTGATGATGAATATGGAATCG GGCTGGCAGCCGATGCAAGTTCAGGAGTTCAGAATTTTGTCAACGGACCT CACCATCTGAATCGGCAGTTCACTTTCCCAGGTGAAATTGGCATGTTGGG TGACCCTGGTCCCTCAAACAGCTCTTGCAGGTTTGAGCGAAGTCACAGTT ATCACGATAATCAATTTCGTCATAACTACAACTCTGCAGGAGGTCAGTTC AATTCTAATCTGAATCCTCAGGCTAATCTTCAGCCTTACCCAAATCTTCC AATTGATGGGTTAATACCACCGAATCAGTGGCAGATGGCCGCTACTGATT TATCTTACTCAAGTATGAGAAGACCACAGGACGATGGTTTGTCGTATCAC ATTCCAAACTATTCAAACTTGGCATGTGGAGTTAATGGTAACATCCTGTT CCGCCCTTCAAATGGACGCTGA
Pep:
>DCAR_027286pep MAGTASEDSAVGRSFEVSLGGQQHSQATSEALAEWRSSEQVENGSPSTSP PYWDTDDDDDGDVLQLQGEENDTVALNKQPSLVRRILFPYPKFLLAYDLV KGPWLNCIYYGRYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFT IAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFIDADTLII KAQVQVIRERVDRPFRCLDYQYRRELVRVYLTNVEQICRRFVEERRGKLV RLLEDKARWSSFCAFWLGIDQNARRCMSREKTDSMLKVVVKHFFIEKEVT STLVMDSLYSGLKALEGQTKSKGGKGKSLELEEPPVPIVCMEKDTFILVD DVLLLLERAAMEPLPPKDDKGPQNRTKDGGPGEDFSKDSIEREERRLTEL GRRTIEIFVLAHIFSSKIEVAYQEAVALKRQEELIREEEAAWIAENEQKT KRGAADKEKKSKKKQGKHKRNNNRKGKDKGKDEKHGIVVEDEAELEIKDV SRNQLSSEELVGDPDRVEDVSDISDSIDCVPELLHPDSEDRDSSAVNWDT DTSEANPPTEASSSRVTDILAVQNGEKKSSTIMDDSSSTCSTDSLHSVTT VNGKYKVNSFQKQKIQKSPSRGEYQQGRVTYEATRLAVDSNSSDAISDGR QLHDVSESCKAVDSEGAFLHSPQHHVQWTEMRATKKEKDKSLQRKLMETE DVDAKKPAQVRTTGSLSTPRSPAKNLPTPVRLRSESQATVSLNLPSPVRL RSELLVTSANDTVTVRKASSESPILADQTAPINSTETVTEAYSHKNASPR PLKKSTALHVPISTANSIAQQVPVPTEKAKVQLEVTAERPISKVSVTTEK PTVQQVMSRPLSAPLVPESRPPAAVVSVVQSAPALSRSTSAAGRLGPEPS PATPSYIAQSYRNAMIGNHVTMCSASYSQPQSPNAAVNSTHLHSHSQPPS LLAPLYFPQTSERIEPNSIRPGLSFGMVGHGSRADNSSRSINFDPSMLSN LRNGSQWTNNLRSDSSRNINYDLSLHNDMQNFDIHNSMRSNPRDHFPIEY PAGPSGRQYQNVQAEDFPHLDIINDLLDDEYGIGLAADASSGVQNFVNGP HHLNRQFTFPGEIGMLGDPGPSNSSCRFERSHSYHDNQFRHNYNSAGGQF NSNLNPQANLQPYPNLPIDGLIPPNQWQMAATDLSYSSMRRPQDDGLSYH IPNYSNLACGVNGNILFRPSNGR*