Resource Type:
Gene
Organism:
Name:
DCAR_026899
Identifier:
DCAR_026899.gene
Locus Tag:
DCAR_026899
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_026899, is a part of gene, DCAR_026899. |
| The genetic_marker, MK006285 K3729, is located in gene, DCAR_026899. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_026899 | DCAR_026899.mRNA | mRNA | DCARv2_Chr8:27809049..27821715 |
Sequence:
ATGGCTCCGGGGCGAAGGCGCGGAGCGAGAGGTGCGAAAACGAAGCAGTT
GAAGTTGGGAGATCTTGTGCTCGCTAAAGTTAAGGGACACCCTGCCTGGC
CTGCTAAGGTTCGTGTTTTCGAGTTTTCGTGTTTATTGTATGTCTTGTTT
CGTAATTGTTTGCGTAATTTTGGATGATCTTATGTGGAATTAGGTTTTGT
TTGTGGCAATTTCGATACGCTGCGGTGCGATTGTGTAATGTGTAGTTTAA
TGTGTGTTATTATTTGTAGGTGTGTAGATAGACGATATGGATTTAGAGTA
TTACTTGACCCTAACATTGTAGAGAACTTTAAAATACGAGCCTATCGTAA
ATTGGAAAGAGTAATGAAAAACAAGCGTACTCCCTCGGTTTCAATTTACA
TGTCCACTTTTAAGAAAAGAATTTGTTTCGAATTAGTTGTCCACTTCAAC
TTTCAATGCAAAATCATATTTCCAAAGTCAATTTTACTCCACATATCTTT
TATATATATTTCCTAGATCAACCTCATACCACATATTATAGTCATTTAAT
GCAATTAATTTGTGAACATTCACTTTTCTTAAACCGTGTGATTTTTTTGA
AAGTGGACATCTAATTTGAAACGGAGGGAGTACTTAATAGTATAAGGAGA
CAATGTAATTAGAAGAAACCATTATTGGACGTCTATGTAGCCGTTCACAC
TATGTACTAGTCAAGTTTGGTGTACGCGTTTTAATTGAACTGTTAGTTTT
CTAAACTTATTGAAATTTTAGGCACTTCAATTCGTGTTAGTTATGACTTT
TTATAAAGGTCACGATGAGATGTAAAACCTTTATATGTATAGGCCTCAAG
CTTAACAACCTATTAAATGTCCTTCGAGGCTTGCCCTTTATATGTACCCC
TGGAGTCCTGAGATATTCTTAGTATATACGAGAACCAAAATACATCCCCT
CCCGACGTGGCCAAACCATCAAAATCTCCCCTCTGTTGCTATATGTGCAA
GTTTAAGGCACCATTTATTATTAAGTACAACATGGTGCAAATGTTGAGCA
CTGTGTGACTTTCTTGTCAAGTAACACTCACGTGGCGACACTTTATTTTA
TTGACCTTGTATTTGTATTTATACAGTGTGTAACGTCATACCCGACCTCT
TATTTCCTCATGTTGAAGCCCAAATGCTGTAGTTGACATTTTTCTTTCAG
GAGACCTTATTGCTTTTTGAATTTCTATCCCCTTCTTTGGGGTTCCTGCT
AGAGGCATATATATGTTGAACAGCTAGTGCATGACTCTTGAGACACTAGC
GCAATGTCAGATCCATGACAAAATTACTATAAAGATTAAAATGAAACGAG
CTTATAATCTATCCATGGAGAAACTTCAACTCAACAGAAAATCCTCCTTG
TTCTAATACTAATTCGCAAACCAAACTTAAATTAATTGTGAATATAACTG
CACTTCAGTAGCATCTTCCTCCAATAACACATGGTACTTACTTTTAATTC
ATATTATATCCCTGGTAGAGCTTATGTCTCGTCGCTTCCTACTTTCTATT
TTTTTGCTCAAATGATTTTTTTTTTTTTTTTATAAAAAAAATCCTCATTG
GTGTTTAAATAACTGGATGTTGCCTTGTACACCTAATCCCCTCGCCCCAC
TGCCATTTCTTTTGCTACTTGTTTTCTTTTCTTCTACAATTCTTTCATCA
CAATCCATCTGTTCTTAACCAAGTCACTAGCTCTATAAATGCACTTCATC
CTTAATTTTCTCTTGCATGTTATCTTAATCCAACATCAAGCCTCCTTATG
GTCCTTACCTTCCTTACTGCTACCTATGAAGTCTTTATAGCCACACTCTT
AATCGTATGGACCATTTTGTTTGTATTTGCTAAACATTTTTTTACCTTGG
ATTTATCCTATAATTCCTCAATTTTGACACACTCTGGGCTATCCAATAGA
AATTTTTTAAGGAGTCTCTTACGTAGGCTTCTTTGCTCAACGAACAACCA
TCTTTACTCATCAGACAGAATGCAATTGTGCAAGCCCTCTATGGATTCCG
TCAGTGTCGTACAGTGTGCAAATTTAGAAGTAGCGCATCAGCCAATTGCA
AAGCTTGACTTGCAAAGCACACTTTAAAACATTTTTTTCGCAATTAGTCA
ATATCCCTAAAATCATAGGGAAACTATAGATATAATCGAATTTGCAATTC
TAGTAGAATTTTCTTTAATAATTGTCAAAAACATAAAGTTTAATGCTACT
ATTAGGTAAGGTTAGGAATATTCACTAGTATTCTGATGAAAAATTATTAT
GCAAGGTGCTGAAGTATTTTCGAAAAGCATTTATTTAATATTCTACCTAT
TATTATGTTGAATTATTAGCGAGGAGGGTTAGAACATTCGAATCAGATCA
TTTACATAAGAAGCAATTTTTTTTGAGATATATAGTGCAATAGGTCCTTT
TTGACAAGTGTTTAATGTATCCTTTCTGATAAAAGCTTTACAAGTTGAGT
TCCGGTTTCCCCAGTAAAGAAAATCTGGGAGGGAATGTAAGAATGTTTCA
TTTGATTCTTAAGAGACAAAGAACTAGTATCCCTGTGTTGACCTAATAAA
AAGCTTGATCTTATAGTTCCTGTATGAGTAAGACTATATCATTGTGTGCT
AAATGCACATATAAGTTGAGGACACAATTTTTGTATATTTATTTATAATA
TTTATATGGCAGAAATATTACTTTGTGTGACTACTAAAGCATAATTGTTT
TGTCTGATTTTTTATGTGTGATTGTATTTCCCAGATTGGCCGACCTGAAG
ACTGGGAGAAAATTCCAGATCCTAAGAAAATTTTTGTGCACTTCTTTGGA
ACAGACGAAATGTGAGTGCCTTTTCTGTGAATTTATATGTAAGTTTGCGA
TAGTGCTTTTGATTTCCAGATGCATCTTGTTTTTTAAGTAGTAGTGGAAG
ATAAATATGAGCCGATGGAGATATGGCCCGGACAGTATGGATCAGACTGT
TCCTATATTAGTATGTACGAGCATTAAACTTTGTGAAGGGAGTTATGGTT
TTGGATTGAGGAAGAAAGTTACAAGTACTACAGAGGGTAGATGGGAGAAC
ACTCGGAAGGGTGGGGTGAAAACTAATGCCATAATTCTCAGAATGTAGTT
ACACGGATCATATAACTTGGTGCAAATAAGCTGTCTTCTTTGAGCACTTG
TGTTAGGAAGGCATGCATTGTACTTTTTGATTTTCTTTAATGACTCGTGC
ATGAGTGCTGGTTGTCTAATTTGTATCATGGTCTGATGTGCACCTAATTT
GTAGATGTCTGATCCTATAACAAGTATTAAATCCGGAAAACATGCCTGAC
TCTGTGAATATTGCACTGTTAGTATATAGGGAACTGTTGTTCAACAGAAA
TAGTCTAAAAAATTAGTTAGCAATGCACTTGTGTTGTGGCGGAGTCATAT
TGATCAAATTTGTCTGATAATAATTATTATTACTTATTATCCATCACAAT
TGCTTATAGGTTGTTCTAGTTGTCTATGTTCAAATATGTTAAAGTTCTTC
ATTGAATAAGTGTTTATCCATGCAACCACGTGCCATAATTGATGTATATG
TTATAATTTGCCAAATAATACTTTGTATCTTATAGGTGTTGATGTTTTTT
TTTTCCTTTGGATCAGGCATCCTAATATTGATTGTTCAATTCTCATTAAA
GTAATCGCAGTGGTTGAATTTTTCTTACAATTCGTTTTAAATTGTCGGAG
TAGAAGTACTTTAATATACCAGATATTGCTTTGCTCTGTTGTAATCAGAA
GTCTGAGGATTAATCTTATGGTTTGTGAACGAATAGTTGACAAGTTACAA
AATTAATAAGAAGCTGGTAGAAATAATCTGGCATCAATTATGATTAAATT
GATTATGTAGTTTCTGACCTACAAAAGTTATTGATCATAGCCTGTGCCCT
CTTCTTTTATATGCTGTTACTGTTCAGTTGGATTTATATGTACGTGATAT
CCACGATGAGCTATATATGTTATATATGAGTTTCTTATGTACTAAATTAC
ACATATGGCGATTTGTTTACTGAGATGCTTCCCACAATCTTTTCTATAAT
TTTTTTTTTCAATACTAATAATAATGTTTAGTTGTAAGAGTAACAATTTT
CAAAATGCCAGGTATATCGTGTACTATACTCTTTTGTGCGTTTTGAGTTT
TATTCATATATTTTGCTGATAAATTAGTTAGACCAGTAACATTCTCAATA
AAATTTTAGTAAAAATACTCATGCTAACTAGACTTACTAATGTGGTACCA
GTCACAGCGCACAAGTTATAGTTGATCATGTAGTTAAAATTGACCAACAA
ATTTAATAGAACATAGCCTGTTCCTTCTTCAGAAATGCTGTTTATGGTCA
GTTATAGTTATATATAACGTGAGGTTCAGGATTATATATACGTCACTATT
GGTTTTGTATATATTTCTTTATACATATGTCAATTCTGCTTCTCCCAATC
TTGTAAAATAATAATGTTTCTATCTCTGTTATTATTTTCTTTAATTTTTA
CTTGATAAATTATTGTTTTGTGGTAATAGTGCGCTGTATAAAGAAGAAAG
CAGTAATTTGATATGCTTAAATATGATATACATGTAATGTTGCTGTAATT
GGTTATTCTGTGATTGTCTGTATATTTGGTTGTCAGGGTCAAGGTATGGA
AATATATCGTGATCATTCCTAATTTGATATTTAGCTATGATGTCAGTAGC
CTTCTCAAAGGGGTTCCGATTTAGTATCTCATTGCTGCTGATTCACAATT
ATTTATCGGATTCTTTTGTTCACAGAGCTTTTGTTGCTCCTGCCGATATT
CAGGAATTTACTATTGAGGCAAAGAATAAATTGGCAGCTCGCTGCAAAGG
TAAAACTGTCAAATACTTTGCTGATGCTGTGAAGCAAATATGTGCAGCAT
TTGAGGAGCTACAGGAAAAAAGTTCGAATGGTGTGGGAGCTGACACTGAT
AAATCTGATTTTGGATCCGAGGCTCCGTCTGCTCATAGCGTGCCAGATGA
TGCTGGAGTGACTGCCTTAGAAGTTAAAAATGCTGTAGATGAGCTGCATG
GAGAGGAGGTGCTTGAAGTCCCAGCAGATCACAGTTTTGGTTTGGAGGGC
TGTTCCCAGAGACAAGGTGAGATGGACAGTAAAGACAGCAAGTCAAAAAA
TAGGGAAGGCACTGTAGTTCCTTCAGAGCCCTCTTGGATAGTGAATCACA
TCAAAGGCTTGATTGCTAGTAAGGACAGTAGTCATTCTGAGGCAGGACGA
TCTTCGGGTGGAGGTGGAAAGGACAGTTCTTTACCAGTGCCTTCATCAAT
TAATCCACAGTATGTGGATAGTGGACCTAAAGAAGCTACAAACGGTCACA
ACTCAAAAAAGATAATTTCTGGGTCAAGAAGAAAGCTTCAAGCTGATAAT
CAAGTGCAAAAAGTTAATCGTTCAGGTGCAGACAAGTCATCGTTACATGG
TAATTCTAGTGATCATGCGAATATGCTTAAATCTGGTGAAGGTAGAGCAT
GGAAAAGGTCGGGTTCCAGTGGTATAAAAGAATACTCTCCAGATAAGTCA
AGATCTAATCTGGATATTCCAAGTGACAAAAGAAAAAAGCAAAATTTGAC
AGATAAAGTACATCCTGATCGAGCAGAAGATTTACTGGACAAGAAGGTTA
CTACTACTAAGAAGCATGACGTAGCTGACCTTTCTGGCAGGAATTCTGTT
ACCAAGTCCCAAATTGGTCATGGAAAGAACAATTTGGTAATTGATGCGGC
TTCACATCCTGTCAAAAGATCTAAATCTGAAGATATTACCCTTGATAACT
CCAAGGGGTCTGTCCAAAAAAACCAGCACAATGGCCAACTTGATAATAAA
TCAAGGAGCACAGAATTTAGAAGGTCTATGTTGCAAGGTAATGTTGAAGA
CTGCTTTGCACCTAGGGATGAGGAGGTTTTCCCGCCTAATAAGCGGCAGC
GTCAGGTACCTGACATTGCTGATGGCTCTTCCACTAGGGCATCTGACAGC
AAAACAGGAAAAGGGCCTGTTCGGAAAAGTGACAGTTTTTCTGATAAAGC
CAAATCACCAGCTGGTCAATATCCAAAAAAGCGGAGAGCTGTTCGCCTGT
ATGATGAAGATGATGATGAGCCTAAGACTCCAGTTCATGGAGGACATGTC
AGAAAGGTTGATGCACCTTTAGGTGTCTTGGGTTCTGTAAAAAATGGTCC
TTCTAAGAGTGGACAGGCGACAGGCATACTTAATGATAGCGTCCCATTGA
AGGTGTCTTTGTCAACTGTCAAAGTACTTAATGAGTCCTCGATGAGTTCT
CACAAGCATGTAGAAGTACAGAACCCCATACAAGCCTCGACACATATTCC
CGTTAGTCATATGAAAGCTGAATCCGTTATGAAATCTTCTGAGGAGTCAA
AACAACTTGGACTATCTCCAGTGCAATCTCCCTTATCGGTTTCCACTAGG
AAGCCTGTCGTAGAATCTCTTAAAGCCAATATGCTAGTGGGCAAGACATC
TGATAATATTTCTTATCGGAATTCTCAATCTAAGTCTAATAAAAACATGG
TTGTGTCTCCTGATTGCACAAATCATTCTCCAAGTCAAGGAATGCGTGAA
AGAAATAAATCTATTGCTTTTGTGGAAAGGAAGAAAGATACTCCAAAATC
AAGCTCAAGGACGAATGACTCGATTCTTTTAACAGACAAAACTTTGGATA
TCATTTCCAGTGGTGACAGGTATGCTAGAACCTTTGTCTGTTTGTAATAT
GGCATATGTTTGTGGTAGTCTTATGTTTATTTGTTTTGTGATAAAATAGG
ATGGACAAAGACAAAGAAGCAGCCAGAGAAGATAAAATGTCTGTGCTCTT
GGATGCAAAGATTGAGGACTCGTCTTCATCTATGAAGCATCTTATTGCAG
TTGCTCAGGCGAAAAGAAGAGAAGCTTACTCTCAAAGCTTTTTTCATGGA
AATTCTTATTCCGATGTGTCTGGAGGGAGTCCCAATGTCGTGTTTGCTAT
TCCACCTATTCAACCAAGCTCGATCATCCAACCTGATACTCATGGATTTA
ATGCTCAGTCAACTGTACCTTCTCCATCTTCTCAAATTCCTCGGCCTTCA
GCAGATAATCATCCTGAGATTGAAGAGTTTGAGGATCTAAGATATGGTTC
TGGGCAGCGAGCTGCTAATGATCCTCTTACTGGTGGCACTGAGGCAGCTG
TTGCTCGTGATGCATTTGAAGGAATGATTGAGACCCTCTCACGGACTAAA
GAAAGTATTGGGCGTGCAACTCGTCTTGCAATTGATTGTGCCAAGTATGG
TATTGCCAATGAGGTAATAGATTATGTTAACATTATTTTTGCTAAATTAT
TATATCAAGATCTGCATGTTTTTATCTGAAATAACTGTTTTTATGAGTAG
AATGTGGCTGCATTGTACTGATCTATTGCACACACTGTTCTTTTCATTGA
GAGTTGTCATTGATGCGATAACGTTCCTACAATCTTGTCAATTTGTAATA
ATATTATAGTTCTGGGGAAGCCTTGTCAGTCTTGTCCGTTTTTATCATAG
TTTTTGTCTTTGTTATTTTTTCTCTCTTCCTATTACTTGGTTATACTGCT
TGTGTTCCACAATCTTGTAAAACCTGAAACTTGCTATTTCTGTTCTCCTA
TGTCATATCATTTTTCAATTCCACTTGAGAGTTTTTTGTGCTGGAACTCA
GTTTCATTTTTGTTTTTATGATATCAGTGTTAATATAATTTCGTGTTTAT
TAGTTTGTTTGAGGGTAAATATGTGAAGGGCTTTGTTTTCTTTTAGAAGT
GATAATTTTATTCATACCTTGGACTCTTGGAGTAAACATGACTTCATTTA
TGTTTTAAATCTTTGAATTGTTCTTTCACATATTTACTATAAGGTTTGCA
GGGTAAAGAAGATGAGTTTAATCTTTGATGAATTCGCGCATTTCGCGTTG
CGCTTATGCTCTAGGGGCCTTCTGACTATGACTGTTTTTTGCATTTCTAA
TATGATGTTTAATATGGTTTTGAAGAAATAGTAAAACAAGGGCATGGTAT
ATTTGTGTTTAGTTGATGGTCATATGATCGGTTTGTCCTTCAGTCGCACT
CACATCTTGATTATCTCTTCCTATAAGTCGATTCCTCACTATTATCATTA
TTTGCATTTCCAATATGATGTTCAATATGGTTTTGGAGAGAGTAAACCAA
GGGCTTACATAGTAATTTCTATTGCCTGCTATACATCTTTCTATATACTT
GGTCCTATGAAAGTGTTTGGCTACTGTTTCTCTGGAGGTATTTGCAGATT
GCAATTTGAGGTATCTTACTGATGGTTGGAAAGTATGGCTGTTTAATTTC
TGTATATATACATATTCTTAATCCCTGAGATCTGCAGGTAGTGGAGCTTC
TCATTCACAAGTTGGAAACGGAGTCTAGTTTTCATCGCAAAGTTGATTTG
TTTTTTCTAGTGGATTCCATCACACAGTGCTCTCATAGTCAGAAAGGTAG
GAAATGCAGAATCAGTATCTGTTTATGGTTGGTAGTGTAGTTTTCTTTAT
CTAATAAAAAAATGGTCAAATCTTTAGCATATGTGTGTAAATGCAGAACC
TGTATCTGTTTATGATTGGTAGTGTGATTACTCAACATGTATGTGGTACA
ATAGTAAAATGGGAAATATATTTTCTATATATGAAAAATGTTCCCCAGAC
TCTTCATTTTGCCTCGAGTATCCGCGTCTTACACTCGACACTCGGACATA
GGTATGAGCACTAAAATACTTATTTATAGCCAAAAATATGTAGGCCCCAT
TTGGTGTTGCTGTTGCAGACAGCAACAATAGCTTTTTGCCGAAAAGCAGG
TTAGAAACTGTTTGGTAATTTCTGTAACAACGCTTATTTTACCGCACTTT
TTTTAACAACATAGTAGTTTTGAACAACACTACCAAACAAACCGGAGTAC
TTTAAAAATGCCCAGTCTGACTTTTGGGCACGTATCTATGTTGTACACTT
CCAGTTCCAGAGTCAGAGTAAAAAAGAATATGAATATGTTAAATACAAAG
TATTAAAATTTAAATGAGCAGTAAATATTTTCTGTTTTAATTTAACAGAT
TTTATGTGATATAAATGATTATGAGTTTAATGAACTAAAGGAATTTAATT
TTCATGTTCTGTAGAGTCTTTGGAATACAAGGAGCTCAGTTTTATAATGT
TAAAAACTAATCTTATTATAAAATTTATAAACACTGAAAGCAGGCGGGCT
AAATAAAATAAAATATATTTGATTGTACTATGTGAACCAACAAGGTGGAA
CTCTTTAAAGCATGTAGCCTTTTCATAATGTATAGTTGGTGATATCTTGA
CGTGTTTTCGCCTCTTTTGCCTGATTGGTTCTTCTTTTTAAGGCATAGCA
GGAGCTTCATATATTCCTACAGTTCAATCTGTGTTACCTCGCCTCTTAGG
AGCTGCTGCTCCTCCTGAAGCTGGAGCTCGGGAGAACCGCAGACAATGTC
TAAAGGTATTGTTTATTGTAGTGTGAGTTGAGTATCAGTATAGCTCTTAG
ATTTTCATCGGTATAGTTATTGGTTCGACCTTCCTATTGTAGGTCTTGCG
TTTATGGCTTGAGAGGAAAATTTTGCCAGAATCTCTTCTTCGAAAATGTA
TGGATGATATAGGAGTTTCAAATGATGACTCATCTGCTGGAGCTTTTTCA
AGACGTCCATCGCGAGCTGAGCGGGCAGTAGATGACCCTATTAGAGAGAT
GGAAGGCATGCTTGTTGATGAATATGGGAGGTATAGATTAATATTTGTTA
TTATCTGAAGATGCTACTTTGTTCCTTATTTGAGTCGATATATGTGCATG
AATAAACACGTACCCTTGAACCTGGTTTTCTAGTATATCTGTCAAGTGTT
AACACATATTCTCAGATCAGCTGTTAATAATTGCTGAACCTTATGATTAA
TAGAAGAACAGCTAAATGTATTAACACTATGATGATTTGTGAGGCCCATC
TATGATAAGCTGTGTCATTATAAGTAAAAGATTAGTTACAAGTCTAATGA
AGTCTAGGATGTGGAGGAAGTGCGGATCATCTCACTTGTTCAACTATTTG
AAGTTCACTCATGATGGATTTGCCTTACTCCTATAATCTTACGTTGTCTT
GTATACAATTATGTGGGTTTGCAAGGCTCTACTTGTTCATGTAGTAGAAT
TGTAGTGAGGTACAATGTTACTATACTCTGGTCAAAGATGTCCTATATAC
CATCTTAGTCATGCAATACAATGAGTTTCAGTGTTGTTGCAAGCTCATTT
GATGTTTGGACATGATTAATCATCTAAGCAGTATTAAGATCACAAGCACT
GAACCTCAATGTTTCTTTGTTACTTACCATCAGGTTTTTCTTTCTACTGG
AACAGTTGTCAGTTGTAGTTTGTCTTCCATATTTATATGTTACAATGTTG
GAATATTAGTGGATCGGCGCTTGTTATGTTGAAAGAATGTGACTGATTGA
TTATATCTGACTGCTTCGTTTTTTTGGTGGTTGTAGCAATACTACATTTC
AGTTGCCTGGCTTTGTGACTTCTCATGTTTTCGACGATGAAGATGAGGAA
GACGAATTTCAAATTCCTACATGCAAAGAACATGCTGCTGATATATCACC
AGTCGAGCTGACTTCTACAGCTGAAGAAGCTCAGAAGCTTACAGTCGACC
AAAATGACAGGCGCCACTGCATCTTAGAGGACGTGGACGGTGAGCTTGAA
ATGGAGGATGTATCAGTCCACTTAAAGGATGAAGGTGCTTCATTCGAAAT
TGTTTCAAAAGAAGAGCAAGGTTCAGACATTATATTAGAAGCAGACTCAA
ATACATATGCACAATTGCCTTTTCCTATGGGTTCCCCGCCATCACCTCCT
GATTCTCCTCCTGCAACTCCCCCTTTGCCCACTTCACCACAACCACTATC
TATACCTCCTCCACCGCCTCCATCAGCTCCATTATCACCTCCTCCACCGC
CACCTCCCCCTGCCCAACAGGCACAACCACATCCTCCACCTCTTGTTAGC
ATACTTCCATACGTAGCTCCTCAGTCATCTGTTATACCTCAACCTTCTTC
ATTACCTCAACATGTGCACCCGCATCCATTTCAAGCATCAGTAACATCAT
CTTCACCAAATTTGGCATATCAACTTCAGGTACCCCATAAGCATTTTGTT
ACAGCTAGTGCAAGGAACTGAGGCTTTGTCTTGTCGTCTTTTTGAAGATT
TCTAATTGCAATTACTTCAATTTATTTACAGGGTACCCAGCTTTCCCAGT
TGGCCGGAAGTAATCCTCATGGAGCTCATATAGATGCCAATATCAGGAAT
GGGATGTATATACAGCCACCATCTTGCTATGCCTCTTCAGGAGTTGGCAA
TGTACATGAGCCTACTGGTTATAATTCAGGAAGGCCACTTGATTGTGGTA
ATACTGATCAGTACATAAATCATCAAACTGCTCAACCCAGTCAACAATTT
CAATCCATGCCTATGTCACAAAGACCTTTCCATCCTGCTCCACCATCGCA
AGCCCCATCGAGTCAGTTTTCATATTCAAATTCAGCTGTCCAACAACGTC
CTCAGCATCAATACCCACAACCATACACATTACCATCACATCCTGATGGA
CCAAGACAATATCATACTGATGATAAATGGAGGATGCAATCAAGTGAGTT
TAGCACCAATAATCCTAATGGCCCATGGATAAATGGAACGAGAAGTTCGT
TGGTACCACCAGTCCCCCCATTTGCTCATGACGGTATGCGGGCTTTCGTT
TTTTTCTTTTATAATACTCCCTCCGTCCTCTCATTTCTTTACAGTTTTTT
TTCACTGCTCGACACTCATTTTAAGGCTCTTATAAAACATAGTTCCGTAA
CTTAGTTTGAGATTTTCTTTTTGTGTATAAAAATTCATATATCAAATTTT
ATTCAAAAGAAAATTAATTAAAAAATAAGTTACGGAACTATGTTTTTTAG
GAGCATTAGAATGCGTGCCAAACTCTCGTCCCCCATGGTAAACTACCTGG
GGAGACAAGAGGGAGTACCTTTTAGTTTTTGTGCCCCTCAGAAGCGTATC
TAGGATGAATTATGTAAAAAATTGAACTATTAGTACACAACTACTCATTA
TCAAATGGGATAAGGGAAAAACAGTCTTATTAGCTTGTATAGAAAATTAA
GCAAATGCCAGGTCTGAAAACCCTGAGCAGTAGATGCAATGCATAAATGA
GAAGGCATTTGAAATGATTTAGAGTTCAAGGCTCTTGTCTCTTGATGATC
CTTTGTGCTGGGAAGAAATATGATTATTTTTTTAATAAGATCCACAGTGG
CAGGTTATTTTCGGCCACATCTGGAGAGGCCTCCCTTAGTTCCTTCCAGC
TTTCAACAATCTGCTGTAAACGCAATTCCAGTGGTACCTCCAATCCCAGG
TGATCTCTTTATGTAGGGATATTTTCTTCACGTCTTAAAGTAATTTCATC
TAATTTATTTACTTAATATGCATTTTTTTCCTGCCATTTTGTCAGGACAA
AATGGTCCCCAGATGATCCCCTGTAGACCAGACATGTCTTCACTTAGTTC
CTGGAGGCCGGCTTAG
Sequence Length:
12666
Sequence Checksum:
568f89ce5a31e52930dfef2258a7209a
View location in JBrowse:
Cds:
>DCAR_026899cds ATGGCTCCGGGGCGAAGGCGCGGAGCGAGAGGTGCGAAAACGAAGCAGTT GAAGTTGGGAGATCTTGTGCTCGCTAAAGTTAAGGGACACCCTGCCTGGC CTGCTAAGATTGGCCGACCTGAAGACTGGGAGAAAATTCCAGATCCTAAG AAAATTTTTGTGCACTTCTTTGGAACAGACGAAATAGCTTTTGTTGCTCC TGCCGATATTCAGGAATTTACTATTGAGGCAAAGAATAAATTGGCAGCTC GCTGCAAAGGTAAAACTGTCAAATACTTTGCTGATGCTGTGAAGCAAATA TGTGCAGCATTTGAGGAGCTACAGGAAAAAAGTTCGAATGGTGTGGGAGC TGACACTGATAAATCTGATTTTGGATCCGAGGCTCCGTCTGCTCATAGCG TGCCAGATGATGCTGGAGTGACTGCCTTAGAAGTTAAAAATGCTGTAGAT GAGCTGCATGGAGAGGAGGTGCTTGAAGTCCCAGCAGATCACAGTTTTGG TTTGGAGGGCTGTTCCCAGAGACAAGGTGAGATGGACAGTAAAGACAGCA AGTCAAAAAATAGGGAAGGCACTGTAGTTCCTTCAGAGCCCTCTTGGATA GTGAATCACATCAAAGGCTTGATTGCTAGTAAGGACAGTAGTCATTCTGA GGCAGGACGATCTTCGGGTGGAGGTGGAAAGGACAGTTCTTTACCAGTGC CTTCATCAATTAATCCACAGTATGTGGATAGTGGACCTAAAGAAGCTACA AACGGTCACAACTCAAAAAAGATAATTTCTGGGTCAAGAAGAAAGCTTCA AGCTGATAATCAAGTGCAAAAAGTTAATCGTTCAGGTGCAGACAAGTCAT CGTTACATGGTAATTCTAGTGATCATGCGAATATGCTTAAATCTGGTGAA GGTAGAGCATGGAAAAGGTCGGGTTCCAGTGGTATAAAAGAATACTCTCC AGATAAGTCAAGATCTAATCTGGATATTCCAAGTGACAAAAGAAAAAAGC AAAATTTGACAGATAAAGTACATCCTGATCGAGCAGAAGATTTACTGGAC AAGAAGGTTACTACTACTAAGAAGCATGACGTAGCTGACCTTTCTGGCAG GAATTCTGTTACCAAGTCCCAAATTGGTCATGGAAAGAACAATTTGGTAA TTGATGCGGCTTCACATCCTGTCAAAAGATCTAAATCTGAAGATATTACC CTTGATAACTCCAAGGGGTCTGTCCAAAAAAACCAGCACAATGGCCAACT TGATAATAAATCAAGGAGCACAGAATTTAGAAGGTCTATGTTGCAAGGTA ATGTTGAAGACTGCTTTGCACCTAGGGATGAGGAGGTTTTCCCGCCTAAT AAGCGGCAGCGTCAGGTACCTGACATTGCTGATGGCTCTTCCACTAGGGC ATCTGACAGCAAAACAGGAAAAGGGCCTGTTCGGAAAAGTGACAGTTTTT CTGATAAAGCCAAATCACCAGCTGGTCAATATCCAAAAAAGCGGAGAGCT GTTCGCCTGTATGATGAAGATGATGATGAGCCTAAGACTCCAGTTCATGG AGGACATGTCAGAAAGGTTGATGCACCTTTAGGTGTCTTGGGTTCTGTAA AAAATGGTCCTTCTAAGAGTGGACAGGCGACAGGCATACTTAATGATAGC GTCCCATTGAAGGTGTCTTTGTCAACTGTCAAAGTACTTAATGAGTCCTC GATGAGTTCTCACAAGCATGTAGAAGTACAGAACCCCATACAAGCCTCGA CACATATTCCCGTTAGTCATATGAAAGCTGAATCCGTTATGAAATCTTCT GAGGAGTCAAAACAACTTGGACTATCTCCAGTGCAATCTCCCTTATCGGT TTCCACTAGGAAGCCTGTCGTAGAATCTCTTAAAGCCAATATGCTAGTGG GCAAGACATCTGATAATATTTCTTATCGGAATTCTCAATCTAAGTCTAAT AAAAACATGGTTGTGTCTCCTGATTGCACAAATCATTCTCCAAGTCAAGG AATGCGTGAAAGAAATAAATCTATTGCTTTTGTGGAAAGGAAGAAAGATA CTCCAAAATCAAGCTCAAGGACGAATGACTCGATTCTTTTAACAGACAAA ACTTTGGATATCATTTCCAGTGGTGACAGGATGGACAAAGACAAAGAAGC AGCCAGAGAAGATAAAATGTCTGTGCTCTTGGATGCAAAGATTGAGGACT CGTCTTCATCTATGAAGCATCTTATTGCAGTTGCTCAGGCGAAAAGAAGA GAAGCTTACTCTCAAAGCTTTTTTCATGGAAATTCTTATTCCGATGTGTC TGGAGGGAGTCCCAATGTCGTGTTTGCTATTCCACCTATTCAACCAAGCT CGATCATCCAACCTGATACTCATGGATTTAATGCTCAGTCAACTGTACCT TCTCCATCTTCTCAAATTCCTCGGCCTTCAGCAGATAATCATCCTGAGAT TGAAGAGTTTGAGGATCTAAGATATGGTTCTGGGCAGCGAGCTGCTAATG ATCCTCTTACTGGTGGCACTGAGGCAGCTGTTGCTCGTGATGCATTTGAA GGAATGATTGAGACCCTCTCACGGACTAAAGAAAGTATTGGGCGTGCAAC TCGTCTTGCAATTGATTGTGCCAAGTATGGTATTGCCAATGAGGTAGTGG AGCTTCTCATTCACAAGTTGGAAACGGAGTCTAGTTTTCATCGCAAAGTT GATTTGTTTTTTCTAGTGGATTCCATCACACAGTGCTCTCATAGTCAGAA AGGCATAGCAGGAGCTTCATATATTCCTACAGTTCAATCTGTGTTACCTC GCCTCTTAGGAGCTGCTGCTCCTCCTGAAGCTGGAGCTCGGGAGAACCGC AGACAATGTCTAAAGGTCTTGCGTTTATGGCTTGAGAGGAAAATTTTGCC AGAATCTCTTCTTCGAAAATGTATGGATGATATAGGAGTTTCAAATGATG ACTCATCTGCTGGAGCTTTTTCAAGACGTCCATCGCGAGCTGAGCGGGCA GTAGATGACCCTATTAGAGAGATGGAAGGCATGCTTGTTGATGAATATGG GAGCAATACTACATTTCAGTTGCCTGGCTTTGTGACTTCTCATGTTTTCG ACGATGAAGATGAGGAAGACGAATTTCAAATTCCTACATGCAAAGAACAT GCTGCTGATATATCACCAGTCGAGCTGACTTCTACAGCTGAAGAAGCTCA GAAGCTTACAGTCGACCAAAATGACAGGCGCCACTGCATCTTAGAGGACG TGGACGGTGAGCTTGAAATGGAGGATGTATCAGTCCACTTAAAGGATGAA GGTGCTTCATTCGAAATTGTTTCAAAAGAAGAGCAAGGTTCAGACATTAT ATTAGAAGCAGACTCAAATACATATGCACAATTGCCTTTTCCTATGGGTT CCCCGCCATCACCTCCTGATTCTCCTCCTGCAACTCCCCCTTTGCCCACT TCACCACAACCACTATCTATACCTCCTCCACCGCCTCCATCAGCTCCATT ATCACCTCCTCCACCGCCACCTCCCCCTGCCCAACAGGCACAACCACATC CTCCACCTCTTGTTAGCATACTTCCATACGTAGCTCCTCAGTCATCTGTT ATACCTCAACCTTCTTCATTACCTCAACATGTGCACCCGCATCCATTTCA AGCATCAGTAACATCATCTTCACCAAATTTGGCATATCAACTTCAGGGTA CCCAGCTTTCCCAGTTGGCCGGAAGTAATCCTCATGGAGCTCATATAGAT GCCAATATCAGGAATGGGATGTATATACAGCCACCATCTTGCTATGCCTC TTCAGGAGTTGGCAATGTACATGAGCCTACTGGTTATAATTCAGGAAGGC CACTTGATTGTGGTAATACTGATCAGTACATAAATCATCAAACTGCTCAA CCCAGTCAACAATTTCAATCCATGCCTATGTCACAAAGACCTTTCCATCC TGCTCCACCATCGCAAGCCCCATCGAGTCAGTTTTCATATTCAAATTCAG CTGTCCAACAACGTCCTCAGCATCAATACCCACAACCATACACATTACCA TCACATCCTGATGGACCAAGACAATATCATACTGATGATAAATGGAGGAT GCAATCAAGTGAGTTTAGCACCAATAATCCTAATGGCCCATGGATAAATG GAACGAGAAGTTCGTTGGTACCACCAGTCCCCCCATTTGCTCATGACGTG GCAGGTTATTTTCGGCCACATCTGGAGAGGCCTCCCTTAGTTCCTTCCAG CTTTCAACAATCTGCTGTAAACGCAATTCCAGTGGTACCTCCAATCCCAG GACAAAATGGTCCCCAGATGATCCCCTGTAGACCAGACATGTCTTCACTT AGTTCCTGGAGGCCGGCTTAG
Pep:
>DCAR_026899pep MAPGRRRGARGAKTKQLKLGDLVLAKVKGHPAWPAKIGRPEDWEKIPDPK KIFVHFFGTDEIAFVAPADIQEFTIEAKNKLAARCKGKTVKYFADAVKQI CAAFEELQEKSSNGVGADTDKSDFGSEAPSAHSVPDDAGVTALEVKNAVD ELHGEEVLEVPADHSFGLEGCSQRQGEMDSKDSKSKNREGTVVPSEPSWI VNHIKGLIASKDSSHSEAGRSSGGGGKDSSLPVPSSINPQYVDSGPKEAT NGHNSKKIISGSRRKLQADNQVQKVNRSGADKSSLHGNSSDHANMLKSGE GRAWKRSGSSGIKEYSPDKSRSNLDIPSDKRKKQNLTDKVHPDRAEDLLD KKVTTTKKHDVADLSGRNSVTKSQIGHGKNNLVIDAASHPVKRSKSEDIT LDNSKGSVQKNQHNGQLDNKSRSTEFRRSMLQGNVEDCFAPRDEEVFPPN KRQRQVPDIADGSSTRASDSKTGKGPVRKSDSFSDKAKSPAGQYPKKRRA VRLYDEDDDEPKTPVHGGHVRKVDAPLGVLGSVKNGPSKSGQATGILNDS VPLKVSLSTVKVLNESSMSSHKHVEVQNPIQASTHIPVSHMKAESVMKSS EESKQLGLSPVQSPLSVSTRKPVVESLKANMLVGKTSDNISYRNSQSKSN KNMVVSPDCTNHSPSQGMRERNKSIAFVERKKDTPKSSSRTNDSILLTDK TLDIISSGDRMDKDKEAAREDKMSVLLDAKIEDSSSSMKHLIAVAQAKRR EAYSQSFFHGNSYSDVSGGSPNVVFAIPPIQPSSIIQPDTHGFNAQSTVP SPSSQIPRPSADNHPEIEEFEDLRYGSGQRAANDPLTGGTEAAVARDAFE GMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIHKLETESSFHRKV DLFFLVDSITQCSHSQKGIAGASYIPTVQSVLPRLLGAAAPPEAGARENR RQCLKVLRLWLERKILPESLLRKCMDDIGVSNDDSSAGAFSRRPSRAERA VDDPIREMEGMLVDEYGSNTTFQLPGFVTSHVFDDEDEEDEFQIPTCKEH AADISPVELTSTAEEAQKLTVDQNDRRHCILEDVDGELEMEDVSVHLKDE GASFEIVSKEEQGSDIILEADSNTYAQLPFPMGSPPSPPDSPPATPPLPT SPQPLSIPPPPPPSAPLSPPPPPPPPAQQAQPHPPPLVSILPYVAPQSSV IPQPSSLPQHVHPHPFQASVTSSSPNLAYQLQGTQLSQLAGSNPHGAHID ANIRNGMYIQPPSCYASSGVGNVHEPTGYNSGRPLDCGNTDQYINHQTAQ PSQQFQSMPMSQRPFHPAPPSQAPSSQFSYSNSAVQQRPQHQYPQPYTLP SHPDGPRQYHTDDKWRMQSSEFSTNNPNGPWINGTRSSLVPPVPPFAHDV AGYFRPHLERPPLVPSSFQQSAVNAIPVVPPIPGQNGPQMIPCRPDMSSL SSWRPA*