DCAR_026869 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_026869

Identifier:

DCAR_026869.gene

Locus Tag:

DCAR_026869

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_026869, is a part of gene, DCAR_026869.
The genetic_marker, MK003434 K0878, is located in gene, DCAR_026869.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_026869	DCAR_026869.mRNA	mRNA	DCARv2_Chr8:28037223..28047532

Sequence:

ATGTCCACTGCTAAACGTGCTTACAAGCTGCGTATCCTCTTTACTTGTGT
GTGTGAGATAATGTTGTTAGTGATAATGCAATTTTTATGTACTTTCTGCT
GATTTTGTGCTGTTGTTTATGTTTCGTGTCTATAGTTTTATGTATGTGGA
ACTATGGTTTTGATGTTGTAGATCTCTTTTTGGTTATGTGGATAAGATTT
GTTGAATTAGATTTGGGAGAGTTATGTGAGATGAAGTTAAAAAGGGTTTT
AATTTGCGGTTCTTGATATATTTTAAAAGAAAGTGAAATTATTAGGAAGG
GGAGAGTAATGCGCAATGTCGGTAAAATATTAGTTTTTAGATGAGAAGTG
TTTATTCTTAACTTTGAATTATATAATAGAGGAATTTGTAGCTCACTCTT
CGAGCGTAAATTGTCTCAAGATTGGGAGGAAGACATCGAGGGTTTTAGTA
ACAGGAGGAGAGGATCACAAGGTTAATCTTTGGGCGATTGGCAAACCAAA
TGCCATTTTGGTAAGTTTCTATATATGTTCTTGTTCGTTTTGATGTGTTG
TTATTCAGTAATTACTTTAGTTCCTCTTAGAAATAAATAGTTTAGTTACA
AAATTTAGTTTAGTAACTAGTTAATCACTTATTTGCACGGGCAAATTTAA
AATATGGGCTGTCAAAACTTATATAGATTTGTAATGTTGAAACATATAAG
TGACTTTCTGAGATGCATAAAGCATTTCTAAAAATAGTTTTTGATTTTTT
TAAAGTTCCTTTAACCTTTTTAGCAATATTTATCGAATCTTTCTGCAGAG
CTTGTCAGGTCATTCTAGCGGTATTGATTCTGTTAGTTTTGATTCTACTG
AAGTGTTGGTAGCTGCCGGGGCAGCGAGTGGTACAATTAAGCTATGGGAT
CTTGAAGAGGCAAAAAGTATGTTATTATGATTTAGTACCTATGCTGATTA
CATTGTGTCTTTTGTTATCACATTTATTTTATAAGCACATTAGACTTAAT
GACTATTAATTCTTCCTCTAGTTGTTCGCACCCTTACTGGTCATCGATCG
AACTGTATATCCTTGGACTTCCACCCATTTGGTGAATTTTTTGCTTCCGG
ATCACTGGACACTAATCTAAAGATATGGGATATTAGGCGGAAGGGGTGTA
TTCACACCTACAAGGGCCACACAAGAGGGGTAAATGCAATCAGATTTACC
CCAGATGGTCGTTGGGTCGTATCTGGTGGAGAGGACAATACAGTGAAGGT
TCTAAGTTATTCTTATTTGTTCCCATTGCATCAAGGATAATTGTGGTCAT
GCATACGTATTAAAGTATATAATGCTGTCACAGTTTTTGCATACATGCAT
TTTTAATAGTTCAGTCCAAATGATGCCTTGACTATGAACTTTATTTGCAA
ATCGCCGTCTTCGATAGGAACTTAGGGAAATAAACATAGCTATTTCTGAC
AACTTTTTGTTCTTAGAGGTCGGCTGTTGTTAGCTCAAGTTATGTAGCTT
CAGTTGTGTAGCTCACGTTATGTAGCTTCTGTTAGTAAACAAAGCTTCAC
TCAGATTTGCTCATTTACTGCCTTTTCTACAAGAAGGCTCATTTTTAGAA
GGTTCTAAAAATCGCCCTAGGAGGCCAATTAATCGGCGCCTTGGTGGTAG
GCGGCAGCTTCTCGATCCGATTATGGCAAAAGCGGGGTTCTGGGCGTTTG
ATCAGCAGAATTGGCCAATTCGGTCAAAAAACAGCCAACTCACCTATAAA
CCGGAACCACATAAACACTGCTTTGATTGCTTTTCCTCATTCATCGCATC
GGCATTGTAATATCGTTAAGTTTGATATCGGAAGGAGTTCTAAAAGAGAT
GAAAGAGAAGAATGGAGATAGAAATTAAATCTGATAAAAAGAAGGACGAG
GTTTGGATGAGATTTACACGTAAAACGAGATAAAGCAGTGTTATTGTAGC
AGTATGTGAAATAGGGTCATATGTGTGTTTTGCTGTATTGTTGTGCGCCT
GCAACTTTTCCTGGCTTGATACTGCTTCCAGATTGGGCTTCTTTTTTTTG
CCAGACTTTATTATTTATGAGTACTTTTATTTGGTGAACTTTGTTTTTTT
GGATATTTTAAATTGTAATATGTATTTAAAAATAATTCACCCAAATAATC
ATTCCTATTAATCCCTGTCTAGCTGATAATGCGCTAGAAGGTACCTGTAG
CGCCTAGACCCGCCTAGTGATTTCTAGAACATTGTGCACCAGAACTGCTA
ATCTAGATGTTTGTATACTTATGGCATAGGCTCCTTTGTACCTACATGTT
TGCACCAGGTCATCATTATAGCATTAGTGACAACATGATACTGTCAGAGA
CTATTAAGTTTAAAAAGTGTATTTTAGCTGTTCAGTAATTGAGTTCTTAG
CTTTCTCTGAATGCATTTTCATGACTCATAAGTCATAAGCATCACACATT
TCATTTTGTTGTATATACATTTATATTAAGTGGAATAATAATCCAAAACA
AATTATTGTTGTTGCAGCTCTGGGACCTAACTGCCGGAAAGCTCTTACAT
GAATTCAAGAGTCATGAAGGCCAGATTCAATGCATAGATTTTCATCCTCA
TGAGTTCTTACTTGCGACAGGTATAATAAAATATTGTTATATGCAGAATT
GTTATTCCTATATAAGTAGTATACTTCATCTTAATCATCTTAATCATAAG
TAGTATACAATGTTACGTATATCATTCTGGTTGATATTAGTTCATCAGTC
ACCAGGGCATTCCCTATCCCACTCACTTTCTGTTAGGTCTACGTGCATTG
CACATTTTTGAAAGTAATGCTTGCCAGTAAGTCTTAATATATATGTTTAT
ATACATAACCTGATAGAAAGTGGAGATATATTTATGTATTTTCTCACGAA
CTTCCAAATTTCACGCAAACTCAAATATGAAAGGGGGAAATTTATATGGA
AGAATTACTCAGCACATAGAAAAGGATGGACCCAAATTTATCAGGTGTTA
ATTATTCAATTAAGAGTCCTACTGTCTTCTGGTTGTACTTCTGATGGATA
ATATGAAAGATGATCAAGGTTGTGAGCTTCTATCTGGATATTAGATTTAG
ACATAGTTATGCTTGGTGATCAGGCTTGATCTGAATCTCTTGGTGGATAC
TTAAGGTTATTACACAAATGTTTCGAAACTAAAATAAAAACTGGTAGCTC
AACAGACCAAAACTTGTTTTTTTTAATTGCCTGAATTGTGAACTCCCCAC
ATTCATCAAGAATACATGCTAAATCACAACCTTAAATGTAGCCAACTTGG
CCCCAGAAGCACCATGTTAGAACCATTTACATGATACTGGTATGTATGAT
GGTGTCATAGGGTTATAATTCCCAGTTAAATAATTGTTAAAAGCATATAG
GTCAATTGCAGGAATAAGGAATCCTTGACCAACTATAGGTATAAGTCTAC
CAAAGAATTCAGCATTCCTACTACCAGTACTCGGCTATATGCTAACAATC
ATCAGTATACTAATTGATAAATGTTTCTTTCAATATATACTAACGATGAG
AACTATTGGCTTAGACAACACAGAGCCTCAAACTGAACTACATGACAAGC
ATCTCTCTCTTTCTCCCCCAGTTATACTGCATATGTTGAATTCTCCCGCT
CAAACTTTATAGAGTAATTACATCATAAAGACGGTTAAATCCATCATAAT
TCACCACTGATACTAAACATTGTTTCACAGGTTCAGCTGACAGAACTGTT
AAATTTTGGGACCTTGAAACCTTTGAGCTAATAGGATCAGCTGGTCCGGA
GGTGAACTATATATGTTTATCTGTGTGTGTGTGTGTGTGTGGCCTGGCTG
TGTATTTGAATAATTTTAAAGTTGTGTGTTTGTTTATTTACACGCACTCA
CCATTTTGTGAATCTGTTTCAAGCCCAGACCTCTGGAGTACGCTCTATGA
CTTTCAATCCTGATGGAAGAACCCTTCTTTGCGGTTTGCATGAAAGTTTG
AAGGTAGCCTTTTCCGTTGACATTAATGTTGCAATAATGATTCTATCAAC
TGATTTATCATGTTTTTACCCAGTTATATATTGATGCTTTGTTATAGGTT
TTTTCATGGGAACCAATTAGAAGTCATGATAGTGTGGATGTTGGATGGTC
CAGATTATCTGATCTGAATATTCACGAGGGGAAGCTACTTGGTTGTTCTT
ACAATCAAAGTTGTGTTGGAGTATGGGTTGTGGACATATCGGTAATATTT
TTCCCAGTAAAAGCAACTCCATGTTGTCTGACTAAAAAGCTGATTTTAAA
CTGATATAAATGTTGGTGACCTTTAACAACTTTCAGCGCGTTGAACCATA
TGCAATTGTTACTCCTCGATCAAACAGTATCCAAGGGACAAAAGCTAATG
TTAGTGGGAGCATATCAGTTCTGACAGAGAATACTGCAAAGACTGGCACT
GCGAGGCTGTCTGTTTCACAAAACTCTGATTCTGTAATGAAGGAAACAAA
AGCTTTTGCTAGGCTTTCAGTGTCACAGAACTCCGAGCCCGTCCAAAAGG
AGTCGAAATCTTTTACATGTATGTCCACGTTCTTCTCTGTATTTGTGAAT
TTGTATTGACTTTGTAATTAATGTTCACATTTTTGTGTTTTGTATTTGTA
TATTCATACTATATTCTCTGCTTTTTGACTAAATTATGTTCTCTTTTCTT
TCGATATATTTGATTAACATAGCCACGGGAACTACACCCAGTACACCTCA
ACGAGTGATTCCAAATGCTGGACCAAAGCCAAGTACAGTTGGTTCGATGG
GCATTCCTGCCGCAACAGCACCAAATGTTGGGTCAAAAACATCTTCAGTT
AGTTCATTGAGCATTCCTGCTGTAACAGCTCCAAGGAAAAATTTGCCAAA
GATCCATGCAACACCCAACACTTCATTTTTTAACAAGTCGGATGGCGTAT
CGGTAGTAGTTCCTAGAAACAGTGCAAGATTGGACCAGGCAGCTGAATTA
AGGCGCGAAGGAATTTCTGGAAAACCGTCCCTTACCATGCAGTCAAGACC
ATCAGCTTTTCGGAAATATGCAACTACTAAAGATGATCCAGAAAGGGCCA
GTGTTTCAGGACAGTCTGAAACTGAAATGTTCACAACCAATGGGTTTAGT
GGGCATGATAAAAGTACTTATCCTTCTGTTCAGACATCATCAATGGGAAC
TTCTGCAAGTACTTTAAAAGATAATAGATCTTCTATACATTCTAAATTTC
AGATGAATCCGGTGACAGAGCCACCTAGCAGCTATCCGCATGAAAGCTGT
ATGTGGTGAATTAGCATATTTAAAAAATTTGCATCTTACAGTTCAAATTA
CTGGTCTCTACCCTGACTAGTTATTCTTTATATGTTGTAGTGGTTATTTC
TGGTGATTTGAAAATGTTTTCTAGTCCAAGGCTTTCCCTCCCTTGTTCCA
CAAAGTAATATAATAACGATAAAATAGTTTTAAGAGACTAAAAAGGACAC
TATCTGCCTTTTCTTTAAGACTTAAGGAGTTTCAAAAGAATAACCCATTG
AAACTGCATGCACGTCTTCTATGTGTGGATACATCATATCTTTTATTCCT
TTTAGGAAATTCTGTTAGTCATACAAGAACATGGTAAACTTACACTATTG
TCATTGTTCATCTCGCACCAGCAGAAGTTTAAGCATGAATGTGATACCAA
CTTCATATAAACTATGTATTTACTATTGATTTTGGCTTTGTTATGACACA
GATGAGACTCGAACGCATAGAATAGATCGAGATGCTTCTTCTATGGAAAA
TCAACGAGGAGGTAGGTTCTATTCTTGTCAAGTTTATAGTCTGGGACATC
TACTGGGCTTGCTAATGATACTTACAATTTCACAGTACGGACACGTTCTC
TTGTTGCAAACTGGGAGAAGAAAGATAAAGCTCCCGGTCCTGAGAGCAAT
CCATCTGGTGCCGTTTCTTCTGTTAACACACTCCCAATTAATGTGGTACG
GTGAATTAAAATGTGCCTGATGTTTCATAAATCATACTGTGTATCATATC
GCTTGTATACTTGTTAACATAATATAAAATGTTGAATATAACATATGATC
CAATTAAGTTCTCTCGACATCTTGAGGTTTAATGAGAGCTGGTAACTTAA
CATATAAGGAATCCTATGAAGCTCAGACTCTTTTGGAAGGATCTGACACG
GACACAAATCAGAGTATCAGATTCTTCGAACACCAAAATCAAAGACTAGG
GGACACGTCTTATAAGGATCCGACATTTGATTTCGACAGGGCAATTGTTA
TTTTCAATATAATATGAATATATGATACCTTTTATAAACAGATACCTATC
ATTTTGCATAAAAAATATACTCCCTCTGTTCCGGGTTTTCTAGTCCCGTT
TCCTTGTTTCTTTGTCCCAAGATGGTTGTCCACATTAAATTAATATGGTA
AATTACATGTTAAATTTGTTAATTTTTCTGAAAAATAATAAAAATCTTTT
GTAACATATAGCTTATTATAATTGAATAAAAGGTGGGTTTTAACGGGGGG
ACAAGAAAAACAAGACGGAGGGAGATTAAACTTTTGAAGAAAAAGGTTGA
AATAATATTTATTACATATATAAATTTATAACAGGTAGAATGTAAAAAGT
TAAAGGGTTAAATTATATTTGTATAACAAATAATTAGAGATAAGTTATCA
TGTGTTGTTTGAGATGAAGTTTTCATTTTCTCTCGGATCAAGATCCAAGT
GTCCATGTCGGGTTGTGTAGACACGATTACGGCTGGGTTCTCCGGAGAGT
CCGAGCATCACAGAAGGAATCTGTTAGATACCTTATTACCTTAGTGCCTT
CCTTTCCTGTTATACTAGCCAGAGCCAGTAAGTCCGTGAAAAAAATGATT
TTACTCTTAAATTTATTCAATGACATATGACCATGTGGACTTAATAAAGA
AAATGATAAATAGAGGACACACAGCTTGGATGTTAGTCTATCCTTATATG
ACATAAAACATATGTTTTGTATTAAAGTTGTTAATTAGTATGTAACACTC
TGAAGCGCCATTTACAGTGTCCAATAGGTGAAGACGTGATTATCTACAAA
ATCTTAGACTCGCATGGTTTTTTATAATATTACCCACTGTGGAAATTACC
ACGTAACATAATTTCCATCCCTGTGAATAGAAAATCATTTAAGATAGAAA
TAAAATATTATGTAAAGAGTTAGCTCATGACACTTTCTTAAATTGGTCAA
TTTTTTTGTTACTTTTTACATTTGCACGTGATACTGGGGAGGGGGGAACT
TAACAATGTTTGGCGTTAGTTTTCTTGTCTTCGTTGGTATAACTACAGTT
TAACTGATGAGGAGCATTTTATTCTGCTTCAAGGAAATGGAGCCTGGCAA
CGAGGAAGATACTATTTCAGCTTTGATGGAACCACATAATAAATTTGTTG
GCTCATTGCAGTCTCGTCTAGCAAAATTGGAGGTAATTATTCCTTTCCAT
TACAATTACTAGATCATACAGAACTTAAGTGTCAGGGTGTATGTGTTGGA
GACTAGGTTTCCTTAGTTCAATTCTTACTGTCTTTAGATGTGCTTCCTCT
TTCTATTTCAATATAAGATAGCAAACCTGTCTTTTTGTTCATTGCTGTAT
CTAAGCGAATGTTCCTCCCAGCCATTTATCAGTGTCACCTCAAGCTTCTT
TAATAAATTTTTGTAAATACTCCCTCCGTTCCTTAATATTAGACATTTTA
GAGTTTTTGTTAGATTCCATAATAATAGTCGTTTTCAACTTTCCATGCAT
AATATTGGCTTCTTTTCCATAAAATTTGTTTACTCTTTTTTTTTTTTGTC
TTTCCCGGTACTTGTAGCACGGCTAAAACTGGAAAAGGATACTCAACAAA
TTATAAGCTCAATGTAGTTAATGCTTCTATTGGTCTATCATCTATGTGCA
AATTGCTAAAACGTCTAATATTAAGGAATGGAGGGATTACTAAATGGAGT
CCATTCTTTTATATCCTCATATCCACCTTAAATTTCTTACTCACTTTACC
GACCCCACTTTTAGTTTCCTGTGCCAAAGTTGTTTTGTGAATTTTACGAT
AACCTGGTCTGTGCCATTTTCATTGATCTTAATTTTACCATGGCTTACCT
GCCGTTCAACAATTTCTCTACGATATGTATAGTATTAATACCTGTTTCAA
ATTTAAGATTAGCAACTCACTTGCAAAGCATCTAATTAATTTTGAAAATA
ATAACTTGGAATGTTCACCAAAATAAAACCTCAAACAAACCCATAATGGT
AAAAATTTGTTGTGCTTTGCAAACCTGTAACTTGGAATTTGTTGTAGCCA
TTTTTATCATATTTTGTATAATTTTTCTGGCAGATGGTCCACAAATACTG
GGAAAGAAATGATATTAAAGGGGCCATTGGAATGACGCAGAAGATGTCTG
ATAATGCTGTAAGTATCATTTAAAGCTTATTTGTAAACTTTGCATATGTT
GTGAGACACCTTTTAAGTCTTTCTGGTTTTACATGAGAAATCTTGCTCAC
TCTCCTTTTTTATCATGATATGTACTAAACTGCTAATGTTTCCATATATG
CCCACTTATCTAATCCCGATTGTGGTATAATGCAGGTCCTTGCTGATGTT
GTTAGTATATTGACGGAAAAACCTGACATTGTTACACTGGACATATGCAC
CTGTGTTTTGCCACTCCTTGCAAGCCTTCTTGAAAGTGAAATGGATTGGT
ATGGTTGACTCTATCTATGCTTTGTTATCTCTCCTTCCAACTATATAGTT
ATCTGATCAGAGTCGAGCTAGTATGCAAACCTTTTACAATCTGCTCTGGG
AAGAAATGGTAGGACTGCGTAAATTTTGATATAAATTTGCTTTTTGTCAG
AAGGCGAGGGAAAGGAAATGAAGAGCATAATTCCTTTATATTCTGATGTA
CTTTCTCTGCCAAAGTTTAACAAAAGAGAAGCCTATTTTCGAATTAAATA
TTTTGTCCAACATAAAAAAGGTGTTAACTTCACAGAGTTAGAATATGATC
AATGTGGCATATTTCTATGAAAATAAAAATCAAGCTAATTTTGTTATAGA
TCTTTTAAGAAAAAATTTCTATGCTTTTCTCTTATTAATCTTCCTTTAAT
TCAAACTTCAAAGGGTCCCTCATTAGCTTTTAAACTTGCAACTATATTCT
ACTCCCACCGTCCCTCCCATTTCTTATCAAATGGGTTGGGCACGGAGGTT
AAGAAATATGTATAAAGTAGTGGAAAAGAGGGTAAAGTGGTGGGACCCAT
TGATTTTTAATGTATAAAAAGAAGATAGTGAAGTAAAAGTAGTATGAAAA
GGAAAGAAAAGTGGATAAGTGATGGGACTTATTGACAATTTTTGGTAAGT
TTTGAAATGTAAAGAATTGAATGGGACACCCCAAAAAGGAAAGTGTAAAG
AAATGGGAGGGACGGAGGGAGTATATTTTTTTAGATCCCATTTGTCTGCT
TTAATCTCCTCATGTTTTTATATTTGAGTTTTTTTGGTAGTCACTAGCTT
GGTAGATAACTTATAATCCAACACTTAATATTATTTAAGGTAAAAATTTG
GTGCTCAAACACTTCATGATATTTGACCCCCACATTTGTGAACATCCTGG
CTTTGGGTATTCAGTTATATACTTTGGTAAATTCTCTGTTGATGATCTCA
CCCAACCAATTAGATCATGATCGATATGTAATAGTCCAACTCAACCTGAA
AACGGTTCTTTAGTTCTTCTGCTTAGAACAATATGTTTCTGGAAAATTTT
GCTAATCATTGGACCGTTTGTATCTTTATGCATCCTTTAGAATGATTCTA
AAGATCCTAGCATTAATAGACTATGTTGTATATAGGCATCAAGGAGTTTC
ACTGGAATTGCTGATAAAGCTTGTCAGGGTCTTTGGTTCAGTGATCTATT
CTTCTTTATCTGCATCATCATCCGTTGGTGTTGATATTGAGGCAGAACAA
AGGTGCGCCTTAATTCTTGTCATTCTTGTTAAACTGTTTTCCTTTTGCAA
CTATTCTAATCTGGGCTTTTATTTCTTAATTGGAGCAAAGGCTTGAACGT
TGCAATTTATGCTATGTCGAGCTTGAAAGGGTCAAGCACTGTCTACCTGT
CCTAACCAGGTCTGTTATCGTACTTTAGCTCTGCTTTTGCATTGTGTATA
TACAACCCGAGACTGAATTGACTTCCTTGTTTCATTTGTCAACAGAAAAG
GGGGAACCATAGCCAAATCTGCCCATGAATTGAGTCTTGCACTTCAAGAA
GTCTCATAA

Sequence Length:

10309

Sequence Checksum:

e3d1a8dbc1b80b9cf33d851f120fc3f7

View location in JBrowse:

DCARv2_Chr8:28037224..28047532-

Cds:

>DCAR_026869cds ATGTCCACTGCTAAACGTGCTTACAAGCTGCAGGAATTTGTAGCTCACTC TTCGAGCGTAAATTGTCTCAAGATTGGGAGGAAGACATCGAGGGTTTTAG TAACAGGAGGAGAGGATCACAAGGTTAATCTTTGGGCGATTGGCAAACCA AATGCCATTTTGAGCTTGTCAGGTCATTCTAGCGGTATTGATTCTGTTAG TTTTGATTCTACTGAAGTGTTGGTAGCTGCCGGGGCAGCGAGTGGTACAA TTAAGCTATGGGATCTTGAAGAGGCAAAAATTGTTCGCACCCTTACTGGT CATCGATCGAACTGTATATCCTTGGACTTCCACCCATTTGGTGAATTTTT TGCTTCCGGATCACTGGACACTAATCTAAAGATATGGGATATTAGGCGGA AGGGGTGTATTCACACCTACAAGGGCCACACAAGAGGGGTAAATGCAATC AGATTTACCCCAGATGGTCGTTGGGTCGTATCTGGTGGAGAGGACAATAC AGTGAAGCTCTGGGACCTAACTGCCGGAAAGCTCTTACATGAATTCAAGA GTCATGAAGGCCAGATTCAATGCATAGATTTTCATCCTCATGAGTTCTTA CTTGCGACAGGTTCAGCTGACAGAACTGTTAAATTTTGGGACCTTGAAAC CTTTGAGCTAATAGGATCAGCTGGTCCGGAGACCTCTGGAGTACGCTCTA TGACTTTCAATCCTGATGGAAGAACCCTTCTTTGCGGTTTGCATGAAAGT TTGAAGGTTTTTTCATGGGAACCAATTAGAAGTCATGATAGTGTGGATGT TGGATGGTCCAGATTATCTGATCTGAATATTCACGAGGGGAAGCTACTTG GTTGTTCTTACAATCAAAGTTGTGTTGGAGTATGGGTTGTGGACATATCG CGCGTTGAACCATATGCAATTGTTACTCCTCGATCAAACAGTATCCAAGG GACAAAAGCTAATGTTAGTGGGAGCATATCAGTTCTGACAGAGAATACTG CAAAGACTGGCACTGCGAGGCTGTCTGTTTCACAAAACTCTGATTCTGTA ATGAAGGAAACAAAAGCTTTTGCTAGGCTTTCAGTGTCACAGAACTCCGA GCCCGTCCAAAAGGAGTCGAAATCTTTTACATCCACGGGAACTACACCCA GTACACCTCAACGAGTGATTCCAAATGCTGGACCAAAGCCAAGTACAGTT GGTTCGATGGGCATTCCTGCCGCAACAGCACCAAATGTTGGGTCAAAAAC ATCTTCAGTTAGTTCATTGAGCATTCCTGCTGTAACAGCTCCAAGGAAAA ATTTGCCAAAGATCCATGCAACACCCAACACTTCATTTTTTAACAAGTCG GATGGCGTATCGGTAGTAGTTCCTAGAAACAGTGCAAGATTGGACCAGGC AGCTGAATTAAGGCGCGAAGGAATTTCTGGAAAACCGTCCCTTACCATGC AGTCAAGACCATCAGCTTTTCGGAAATATGCAACTACTAAAGATGATCCA GAAAGGGCCAGTGTTTCAGGACAGTCTGAAACTGAAATGTTCACAACCAA TGGGTTTAGTGGGCATGATAAAAGTACTTATCCTTCTGTTCAGACATCAT CAATGGGAACTTCTGCAAGTACTTTAAAAGATAATAGATCTTCTATACAT TCTAAATTTCAGATGAATCCGGTGACAGAGCCACCTAGCAGCTATCCGCA TGAAAGCTATGAGACTCGAACGCATAGAATAGATCGAGATGCTTCTTCTA TGGAAAATCAACGAGGAGTACGGACACGTTCTCTTGTTGCAAACTGGGAG AAGAAAGATAAAGCTCCCGGTCCTGAGAGCAATCCATCTGGTGCCGTTTC TTCTGTTAACACACTCCCAATTAATGTGGAAATGGAGCCTGGCAACGAGG AAGATACTATTTCAGCTTTGATGGAACCACATAATAAATTTGTTGGCTCA TTGCAGTCTCGTCTAGCAAAATTGGAGATGGTCCACAAATACTGGGAAAG AAATGATATTAAAGGGGCCATTGGAATGACGCAGAAGATGTCTGATAATG CTGTCCTTGCTGATGTTGTTAGTATATTGACGGAAAAACCTGACATTGTT ACACTGGACATATGCACCTGTGTTTTGCCACTCCTTGCAAGCCTTCTTGA AAGTGAAATGGATTGGCATCAAGGAGTTTCACTGGAATTGCTGATAAAGC TTGTCAGGGTCTTTGGTTCAGTGATCTATTCTTCTTTATCTGCATCATCA TCCGTTGGTGTTGATATTGAGGCAGAACAAAGGCTTGAACGTTGCAATTT ATGCTATGTCGAGCTTGAAAGGGTCAAGCACTGTCTACCTGTCCTAACCA GAAAAGGGGGAACCATAGCCAAATCTGCCCATGAATTGAGTCTTGCACTT CAAGAAGTCTCATAA

Pep:

>DCAR_026869pep MSTAKRAYKLQEFVAHSSSVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKP NAILSLSGHSSGIDSVSFDSTEVLVAAGAASGTIKLWDLEEAKIVRTLTG HRSNCISLDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGHTRGVNAI RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHEFKSHEGQIQCIDFHPHEFL LATGSADRTVKFWDLETFELIGSAGPETSGVRSMTFNPDGRTLLCGLHES LKVFSWEPIRSHDSVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDIS RVEPYAIVTPRSNSIQGTKANVSGSISVLTENTAKTGTARLSVSQNSDSV MKETKAFARLSVSQNSEPVQKESKSFTSTGTTPSTPQRVIPNAGPKPSTV GSMGIPAATAPNVGSKTSSVSSLSIPAVTAPRKNLPKIHATPNTSFFNKS DGVSVVVPRNSARLDQAAELRREGISGKPSLTMQSRPSAFRKYATTKDDP ERASVSGQSETEMFTTNGFSGHDKSTYPSVQTSSMGTSASTLKDNRSSIH SKFQMNPVTEPPSSYPHESYETRTHRIDRDASSMENQRGVRTRSLVANWE KKDKAPGPESNPSGAVSSVNTLPINVEMEPGNEEDTISALMEPHNKFVGS LQSRLAKLEMVHKYWERNDIKGAIGMTQKMSDNAVLADVVSILTEKPDIV TLDICTCVLPLLASLLESEMDWHQGVSLELLIKLVRVFGSVIYSSLSASS SVGVDIEAEQRLERCNLCYVELERVKHCLPVLTRKGGTIAKSAHELSLAL QEVS*