Resource Type:
Gene
Organism:
Name:
DCAR_028970
Identifier:
DCAR_028970.gene
Locus Tag:
DCAR_028970
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_028970, is a part of gene, DCAR_028970. |
| The genetic_marker, MK019032 9_291214, is located in gene, DCAR_028970. |
| The genetic_marker, MK019035 9_292124, is located in gene, DCAR_028970. |
| The genetic_marker, MK019034 9_292277, is located in gene, DCAR_028970. |
| The genetic_marker, MK007933 TP22475, is located in gene, DCAR_028970. |
| The genetic_marker, MK019036 9_300080, is located in gene, DCAR_028970. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_028970 | DCAR_028970.mRNA | mRNA | DCARv2_Chr9:291151..304036 |
Sequence:
ATGTCAGTTGACTCCGACGCAGGAGCCAGCAGCAGGGACTGGCTGTTTCC
ATCGCCTGCAGGTGGCAAGCAGCAGCAGCGTGACTGGATTTATCCGTCTC
CATTGCTGTCTTCTTCGCGTCTCTCTAAAACGCCAACTCGAAGATTTTTC
TCCACTTATCCCCCTCCTCCTCGTGCTCCTGCAGTCCCTGTTGCCACCGT
GACAACGCCTCAGAATCGGTATTACCCTGCTTCTGCTGGTATTCGTCGCA
GAATTAATTTTCCTCGTCGATCATTGAAGGAAGATGTTTCAGTGGAGGAG
AAAAAAGCAGTACCGGCTTCCAATGCTGCTAAGTGTCTTAAGGCTGCTGA
TGCTGCTGCTTTTCGGTTCAAATTTAGCTGGCAGCGGTTTGTTGTGATTG
CGTTTCCAGTAGCTGTCAGCTCTCTTTTTTCTTCAACTTGAAATTTATTG
CTACATTTATGTGGTTGTCTCGAATTTTAATACTCACATATACATATTTT
TGCAGATTTTGGTAGCTTTGATTTCTTCTCTAGTTAACAAGAATTTCTCA
TTGCAGAGTCAGGTCACAGATTTACAGGTAAAATACCTGTTTTTTTTTAA
TTAGTATTGAACCATTTTGCGAAATTTAAGTTCAACTATTATTTTCATGA
TTTTTCGAGATAAATTACCTGATGCATTAGTATAGAACTTGCATTCACTT
CCTATCTTTGTATATCTCCAGCATCAAATTTATAGGCTCAATGGGAGATT
ACGTCTTTGCAGTGGTTTGGATTCGTTAAATTCAAACGATAGCTCATATG
AGGAGAGTGATACTGATAGTTATTATAGCAAAAGTCTGAAGATAACAGCT
CTAGCTGTTTCCCTCATACTTTTAGCCCTTCCGTTTTTCTTCTTAAAGTA
TGTGGACTACGTTTCAAAGAAAAGTAAATCACCAGACAGCATTGCAGAAG
AAGTATCTCTAAACAAGCAGCTTGAGTACAAAGTGGATGTATTTTTGTCG
GTCTATCCATATGCTAAGCCACTGGCATTGTTAGTTGCAACGCTGCTGCT
GATATTTTTAGGTGGCCTGGCACTGTTCGGAGTAACAGATGATAGCTTAA
CAGATTGCCTCTGGTTATCTTGGACATTCGTTGCTGCCTCAGGGAATCAT
GCTGACTCTGAAGGTCTTGGCCCCAGATTAGTATCAGTCACCATTAGTTG
TGGCGGGATGCTCATATTTGCAATGATGCTGGGACTTGTTTCTGACTCAA
TTTCCGAGAAGCTCGACTCCCTGAGAAAAGGAAAAAGTGAGGTGGTTAAA
CAGAATCATACTTTGATTTTGGGGTGGAGTGACAAGTTGGTAAGTGCTCA
AATCCATGTGGATTCTCTTTATGCAGTTAATGCATTTGGTATATTGGCTA
GATTTTAACTAATTTACTCAAGGTATGATTACTATTTTTCATGGGATACA
AAAATAGTTGTAAGTTTTTTCTCATTTTTCTTTATGTAAAATTAACAAAG
CTTACAATATGTCATATGCAGCACTGGCAAATAAAAATTTTTCTTTTTAT
ACATGCCTGCAATAAAGCAATCGAATCCTCACTTAGCACTGATATTATTT
GATTGTCATGCTTTGGTGGTTGTCATTCTATCATATTTTCTGTCTGTTCA
AGTGTTCTAAGTAAAGGAAATGAAAATAAAGGACATTTTCTTCTAGTCAT
ACTCTGATTCAACAGTCTTACGGTTGCTTTTAGGGTTCAATCATGTTATG
TAAATAAAATCATTACTAATGACCAGTCAACAATAGTTCATGAAACTGGA
ATCATGTGTATGCTGACTTTCAAGTTCCTCTCTCGCTCACAAACTATTGT
ATTTTCAGGGATCACTATTGAATCAGTTAGCCATAGCTAATGAGAATTTA
GGCGGAGGGATTGTTGTTGTCATGGCTGAAAAAGACAAAGAAGAGATGGA
GGTTGACATTGCTAAAATGGAGTTTGATTTTAGAGGGACATCTGTCATAT
GCAGAAGTGGAAGTCCCCTAATTTTGGCGGACCTCAAAAAGGTAAGCATG
TTATAATATCTTTCATCTCAGTATCAGATTTGAAACCAATTGCCGACGTT
GTCTTACTCTGGATGATGCTATTAACAAACTTTGTTAATAGTTTTTTCTG
AATTTTGACTGCATGCTTCGTGTATTCCCTGGGAAATAAATTCAATATTA
ACATCTTGCATTACAATGTAGATTTGTCGACTTCAGATCAGTTAAACTAA
AGCTGCCAAAGTTGCTTTTCTAGTCACTTAATTGGATCGTATTATCACGT
TAACAAATGAGAATCATCTGAATATGGTGGATACATGATTTCAAGTCATC
TTCTTCTTTTGGAGCACCCTGATTGTAAAGTTCTCTTCTTTACAAAAGGG
CTCTGAGAGGGAAGTACGGCTGAGTCTTGGTATTGTAAGATGACAATATT
AGTCATAAGCCTTTTGCATGTGCAGTGTTTTATACGTTAAACTTCTTACA
GTAAGCCTTCAATTATAAGGTTTGAAGTGTTTCTTGGTCTTAGTTTTTAT
GTGTTTGTTGATGTAAATCTTAAGACTGAGAATGTCATTGAGTCCTCTGT
TTAGGCTGATCAGTTGATTCTCACTAATTCTTTTCTTTCTTTCTAAATTG
ATTTTAATAGGTATCTGTTTCGAAGGCACGTGCAATAATTGTCCTAGCAG
AAGATGGGAATGCTGACCAGGTAATAAAAATTCGACTCTGATGAATCCTT
AGTGTTGATATGTTTTTTTAATCCTTTAGTCCTTTTTGTCTATTTAGAGT
GATGCTCGTGCATTGAGGACTGTTTTAAGCTTAACAGGAGTAAAAGAAGG
ATTGCAAGGACATATAGTGGTGGAACTGAGTGATCTTGACAATGAGGTCC
TTGTAAAACTTGTTGGTGGAGATCTTGTTGAGACTGTTGTAGCACATGAT
GTGATTGGTCGCCTGATGATACAATGTGCCCGACAGCCAGGTCTTGCGCA
GGTCACTCTTCAGAGGATTGTTATAATATATTCTTTTGCTGTAATTGTGA
TATCAGACTTTCTTAATGGTTTGGTGACATGGTCTTAATATTTTTATCTG
TATTTATCGGGTCAGTGCAGATTTGGGAAGACATACTTGGATTTGAGGGT
TGTGAGTTCTATATCAAAAGATGGCCACAGTTGGATGGAATGCAATTCGA
AGATGTCTTAATCAGCTTTCCTGATGCTATTCCCTGCGGAGTGAAGGCTG
CATCCCATTTTGGCAAAATTATTCTGAACCCTGAGGATTCATATATTTTA
CAAGAAGGCGATGAAGTTCTCGTCATAGCTGAGGACGATGATACTTATTC
TCCAACAAAATTTCCGACGGTGCCTAACTAATCTCTTAGTTCGTATTTTC
CTTTTTACTCTGTTAATCTGTTTTTTATATCTATGACGAGGCACTGTTTA
CTGTGTGCATCCAACACACTGGCCTTTTTTATAAAACTCATGTCAAGATT
ACACCTATTGATGAATTCCTAGCAATAGACGAGTTTTACATCACATTTTC
CCCAATTTCACACCAGCTTTCAGTTTGAAGCATAGCGTTCTACTAAACTA
TTGCCTAGGCAATTTAGCATATTCCATTGTCGGATAATCAGATCAAGTTT
ATAAACTTGCATATCCATGACTGCCCCATGACAACCACAGTTGACATTTT
CCTAGAGTTTATTATTAGGTTCCCTTTCCTTCAAGTGTTCTGGCAATTCT
TATAGTCGTTTCACTTAACTCAGTTAGACTGGTCATTAAGTAGGCTGTAG
CAGTATGACTTTCATCAGTATAACATAGCTATTATATAGGAAAGTGGACT
ATGTTGGCATTGGACGGAAAAAATGATTAGTGAATCTTCCATAATAAAAC
TCATATAAGTAAAATAATTTGGTCATTCAGGTCCGAGAAGCACCATTCAT
ACACATATCCCGACCAGAAAGAAAGCCTCAGAAGATTCTACTTTGTGGAT
GGAGGCGGGACATTGATGATATGATTGTGGTAAGTTCAATCAGTTAAATT
CCTAATACCTTCTTTTCTTTATTTGAATGCTGCAGGTTCGGAGAGGGAAT
TTGCCAAAAGACTTCATTGAAGCAGAGTCTGAGGAAAGGATTCTGTTTTG
TGGTTGGCGAAGAGACATGGAAGATATGATTATGGTAATATTACAGGAAT
TTATGCTTCCACTGATTCAATCCCGCAGTGTTCAAGAAATTTACTTGGTG
CTAGACAAGTCTGGGAACATTTTTCGTTGACTTTGCTTCTCCAATACTCA
ACTTTCAGTCCTGAAATCAAGTTTCATTTTGTGATGAAACACAACATTGC
TTCAATTCTGTGCCAAAATTTCTAACAATGCTACCAAAGGAATTGATATT
TTCCAACTTTCTTATTAATATGTTAAATAATGTTGTTTTAGGTATTGGAT
GCCTTTCTAGCCCCAAATTCAGAGTTGTGGATGTTCAATGACGTTCCTGA
AAAGGAGAGAGAAAAGAAGCTGATTGATGGAGGCCTTGACTTGAATCGAC
TGGTCAACATAACGTTGGTTAATCGTGAAGGAAATGCTGTAATACGTCGT
CACCTGGAAAGCCTTCCTTTGGAATCTTTCAATTCAGTAAGTAGCTTCAA
ATAAATTTCTTGGAAAAGTTCAGCTTTAATGGTTTTAGAAGTACAGATAA
TAAAAGATTCGTAAAGACTTTCTGGTATTACATAGTGTTGTTTTTCACAT
TAGCTGTTATGTTGTGTGGCAAAACTGGTTGACATCTCTAGATTATCTTC
TGCGGCATATGAGTAGCTTGCAATGGTATGTTCATGGAACTTTTTGTGAG
TTCTGACCAACATAAGACTGTGCTGAACAAATTTTACAGTGCTCTAATTT
ATTTATCATAAAATGCCAAAATTTTTTTATGTTCTTAAGACTTGCTTCCT
TTCCTAAGGTTTAGTGTTTTTATTTTGAAATGTTGGTTGGTAACTTCTAC
AGATTTTAATATTGGCTGATGAATCAGTAGAAGATTCAGCCATTAAAGCT
GATTCTAGATCTCTTGCCACCTTACTCTTAATCCGTGATATTCAGGTAAT
TTCATCGAGAGCTATTCTGTGTTCTCTAAAATGATAAATTTATAACAAAT
TGCCATCTGTTATATTCGACCTTTGCTTTCCTGTTGGATCATAGTCATGC
AAGTTTAGTACTTACCTGTAGGCCAAACGTCTTCCGTATAGAGAAAACAA
GGTCTCCCACGTCCACAGAGATAGCTTCTCACAAGGTTCGTGGATGGGTG
AAATGCAACAGGCTTCAGATAAATCAGTAATTATCAGCGAAATTTTGGAT
CCAAGAACCAAAAATCTATTATCAATGTCAAAGATCAGTGATTACGTTTT
ATCAAATGAGCTTGTCAGCATGGCACTGGCCATGGTTGCAGAGGACCGTC
AAATAAATGATGTGTTGGAAGAACTCTTTGCAGAAGAGGTATCAACTTCT
GTTTGTGTTTTCTATATTTTACTCTAAGCATTTATCATTCTTATGCTCGC
ATAAACAGGCCTAAATATACGTCACTGAATCATTTCACTTTACAGGGAAA
TGAGATGCATATAAGACAAGCAGAACTTTACCTTCATGAAGGTGAAGAGT
TGAGTTTTTTTGAGGTACTCTTACGTGCTCGTCAAAGGAGAGAGATTGTT
ATTGGTTTTAGAACAGCAAATGCAGAGAGAGCCGTTATCAATCCGCCAAA
TAAAATGGAAAAAAGACGGTGGTCAGTGAAGGATGTTTTTGTAGTAATAG
CTGAGAAGGAGTGACTTTCAATTGTATATAGACTTTACTTGCTGCTTCTG
GTATGGAATGAAATCCCTAAACCAGATGGACCAATTAAAGCCTCGTATCT
TCATCAACTCTATCCAGAAACCAGAAGTCGAGGTTACCAGATGGCCAACA
TTCCGAGGGTCACCGTGTCCAGTCCAATACAGGCCTTTGCTTAGCTTTAA
ATAAAGAAGAGGAAAAAAACCCTTCAGGCTTCAGTTATGATAATTTTACA
GGGCGTCCAAGGTTCCTACAATGTTCACCAAATGTTTCGTCCAGAAAGGG
CTCCTGCACTCTGCAATCATTTTTCTACCACATCCTTGTAAATAGGTCAC
ATTGTCGAATTAACATGTTATTTTTGGAATCATTTTTCTCTCTTCCATTC
TTTAAAAGGCCAGAATGTAAAATATTCCCTCAGAGTCGGTTTCTGCACTC
TGCAATCATGCATAGTGTGTGTCGCAAACAATTACTAACTTCTGAGCACA
TAACAGCTTCTGAATTCCCTTGAAAACATGTGCAGTTAGTGACAGTTACA
TAAATTCTAGTCAGCTTCAAATGCAATATATCAAATTCACTTGGAAAAGA
TTTATGCAACTTATCTCCAATGCATATTAAGCAAAAATGGATAATCAAGT
CATACCTCAGTCTAAGAACTATTATTAAAATAGATATTAAGTTGTAAGTT
CATAAATTTGTTTGGTAAAAAACACTAATCCATGTCAAGATATTACAAAA
TAAATGATCATGCATGCTTTGCATACAAATTAATAGTATATCATAGGCAT
AGTGTAATACCTTGGCACTTGGTAATGTTTGCCAAAATTGCTTAACAGCC
ATTGAATTTTCATCTATCATTATTAGTAGGTTAGCTACATTATAGCCATA
ATGTGATTTATCTTAATGATCTGGTCTTTGGAGGATAACAGCACAAACAT
AATTTTATCTTGCTTGTAATTTCACAGGCATTTATCACCGCTTGTGTTCT
TTATTTGATATTTTACCGCTAAATGTTGTCCTAAACACTTTATATATGGA
TGGAATATACACGAATATATGCACTAAGATCAACTCTCAAAGGCTAATCC
TAGGGAATCAAGTGGAATTTTATTATAATTATTTTTTGATATTTCCTAAT
AAATTATTAATACCTTCTCACAAGATGTTACAGATGCAACTCATTTTTGT
TGGTGCTCAACGAAATAATTTCAAAATTTTGGTTTTCAAATATAAAATTT
TCAAATTTGTTTCATGATAGAATTATATTCCCAAATATATATGTACATGA
ATCTAGACTCGAAAAATATTTTAAATTTTTAATATATCAATCGAACAACC
AAGTCCAATCCAAGGAAAATGCTTGGTGCACATAATTGTGTACAAAAACA
TGTACATAATGATATGTGGTGGATTTTAATTGGATGACCCCTGCATTTAC
ACCAACCATCCCAATTAAAACCCACCACATCACCACATCACCACATCACT
TGCCACATCATTATGTACAAATTTTCTGTCTCCCAATCCAAACCTTCTTC
CCACCGAAAAACTCGGTCACAACACACTTACATCACCACGTGTCACTCCT
CCTCTTCACGCTCCTCTGGGCCCCACCTAACCATCCGCACCCGACCCGTA
TTACAAACACCCATAATTACCTTCTCTCTACTCTCTCTCATCCCCGTCGG
CGATCAATACACAACATAAAACATATACACACACAGACCTGTATCTATCT
CATCTCCAATCTCCTCCATTCCTCACCGTCCGATCATCCTCGCGATCCGT
GATTGACATCATCGAGGTAGTTTCATGACGTCACACTCTCAACGAGCTCA
ATGAATTGAAATATGATTTAATTAGAACTTTAATTTGTGAAATGCGGTTT
GTTTTGTTGCTGATTTTGTGTTGTTTTGGTTCAGGTGGCTGAGTGAATTA
GGTTTGTTTTGTTTCGTTCCGTATCGAATCGAGTGAAAAAGTAAAGTCAT
GTCGGGGCCTCTGGATCGATTTGCGAGACCTTGTTGGTTTACTTCTCTCG
GCTCTTTTATCGCTTATGTTTGATGTGAATATTTTTATTTGTGTGTGATT
ATCTGTTTAGTGAGGCTAATCTTACAGAATTGTGCCGTGTTGTTGAAATT
GGAGTTTTGTCGTGTATATGTTTTAATTGATAAGAAATTGGAATGTGTTT
TAGTAGTTATTGAAAGTTTTGATTTTTTTTATGTAGCTGAAAAAAGTAAT
GATTTTTAATTTTCGAATATGAATTCTGTATCAGGAGTTTTAATTCGGTG
TAATTAGGTCAGATGGGGGTATCAAGGGTTAGTATTAGAATTATCTGTGA
TGTGATTGCACATTATACTTTGAGATAGCTGATTCTATTTGTTTATTGAG
CGAGGCAGGTTTGTGTAGAGGAGGTTTGTTTGTAGTTCATTTTACGGAAA
ATAGGCCTGATGTGAGTTCATAAAGAATATGGAAAAGATTTATGAAGAGA
TTATATGGGTTTGTATGGTATTGAATTTGTGAAGCTACATAGCCTATGTG
GACTTGGTTTCCCACAGATGTCTCTTAAAACTTAAAAGTGGTTTTTGTTG
CACCATATTTTTATGTAATACAATGTAGGATATAATATAACATGTTTGTA
GCATTAAGAAATATATTGGCTAAATTAATATGCAGTGATGCATGTTTACT
TGTACTTGTCCAAGGTCGATAGTATTATTTCGGTAGCAGTTACCATACTT
TCTACAATATTATTGTAATTTGTTAACATTTCAAAATATACGTCTCAGTT
CATTACTAATTCTATCATAAAAAGATGTTGCTTATTTAGTGACAACGTTC
AGTAAATTTTTACTTTATGTTTTGTCATTTTTTGTAAGCCATTTTGAAGT
TCTTAGCTTTATAAACTTGTCATACTTTCTGATAGGTTTTGAGGGGTCCT
CTGGTAATGAGGAGAGAAGAGAAAGAAAATCCGACTATGAAAACTCAGAG
GATGAAAGAAGGACGAGAATTGGCTCTTTAAAAAAGAAGGCCCTAAATGC
ATCTTCCAAGTTTAAGCATTCTCTCAAGAAAAAGGGCAGCAGACGGAAAA
GTGATGGCCGAGTTAGTTCTGTTTCTATAGAAGATATTCGCGATGCTGAT
GAGCTACGAGCTGTGGATGCATTTCGCCAAGTACTTGTCTTAGATGAACT
GCTGCCTGAACAACATGATGATTATCATATGATGTTGAGGTACTCATATT
TGGCTTCTCTTGTTAAGCTTTGGATGTCTAGTGGATATATTTCGATATCA
TTATATATATGTCGGAACATCATTTTACAGTGTGCAAGACTGCATTCAAC
TTGATAGTGTTGACTTCTTCAGTTAGTGGCTAAAAGGCTGGCTCACATGC
ATCATGCATGTCAATGTTCTCATTTAGTCAGGACTAAATTACTTCTGACT
GCGCTGAATCTAGAACTGCACGTTTGTACATTTAAATGTTCTGCCAACCT
GTGGTCTACTAACTTGATATAATATATGAATACTCAGATTTTTAAAGGCG
AGGAAATTCGATATTGAGAAGGCGAAGCAAATGTGGGCTGATATGATTCA
ATGGAGGAAGGATTTTGGAACCGACACAATTTTGGAGGTATATCTACCCG
GGTTTTCTTCAACTTTGCTTTCGTCTATTCTTCTCAGGATGTTGAACTGA
GAAGTACTATTTACATCATGTGGCATCTGTACTGCCACCTTCTGTAATTT
TCTTGGATTAACACTTTCATATTTTCAATATTGTACCAGGATTTTGAATT
TCATGAGTTGAATGAAGTTTTAAAGTATTACCCACAAGGTAATCACGGCG
TGGACAAAGAGGGAAGACCCGTATATATTGAAAGATTAGGAAAAGTTGAG
CCTAACAAACTTATGCAAGTAACAACTATGGATCGGTACATAAAATACCA
TGTGAGGGAGTTTGAGAAAACTTTCAAGGTTAAGTTTCCAGCATGTTCTA
TTGCTGCAAAAAGGCATGTTGATTCAAGCACGACAATTTTAGATGTTCAG
GGAGTGGTATGGTTCCTCACCTTTTACTGGTCTTTTTATGCGTAGTATTA
GTGTACGTTTGGATTCATATAACCTTGATATGTTTGCTGTTAATCATGCA
GGGGTTGAAGAATTTCACGAAAGTAGCACGAGAACTCGTTATGCGGCTTC
AGAAAATTGACGGCGACAACTACCCTGAAGTAAAATTGACTATCATCTTT
TTGATAATTGCGCACGCACAAACACACAAATACACACACACACACACACT
TCCACCTTGTATTTGACATAGTTGAACTCTTAATTGCCTGACCAAGAGGT
CTTTGGTGGATATCATTTTTCAATTAGTTACAGATTATGTTATATTTTTA
AAATTCCAATGCAAGGAACCAATATTTGTTTGACTAATTTTATCATATTG
CTAATTTTTTAATGGGCAGTCGCTTCATCAAATGTTTATCATCAATGCTG
GTCCTGGTTTTAGACTGCTCTGGAGTACTGTCAAGTCTTTCCTGGATCCC
AAAACCACTTCAAAGATTCATGTAATTTTATACATACTTTGACAAGTTTT
ATAAATTACTATTGAATATTGGATTCTTCTGCTCTCCACCACTCTTGACC
TTGTTACTCTCGTTTTGAGCTTTAGGTTCTTGGAAACAAGTATCAGAACA
AATTGCTTGAGATTATAGATACCAGGTACTCACTTATATCCTCCATCTTC
AAATACATGATAATAGATTCAGCGTTATCTGCATATACCTTTTCAGAACA
TCTTGAAAGAGTGTCATATCTTAGAAGCGCTTCTCTTTTTGTTATTTTAC
AGTGAATTACCAGAATTTCTTGGTGGTATCTGTACTTGTGCAGATCAAGG
GGGTTGTCTTCGTTCTGATAAAGGACCATGGAAAAACCCTGATATTTTAA
AGGTTTTACCCTAGTCTGACTACATTGTTCTTTATACTTCCCTTCATAGC
GTGTTGGTATATTCAGTAACCAGTATGATATCATACCTTAAGACTTGTCC
TGAAGTCCTATGAAAACTTTTTAGTTTTCTAGTTGTAATTTCCCATCCGT
ATATATATGATGCAGATGGTTCTAAGAGGGGAAGCTGGGCATGCCAGACA
GGTTGTTAAAGTCTTAAACAGCGAAGGAAAGGTAGTTGCTTATGTTAAGC
CTCGCTACCCAATGGTATGATTAATCTATTTTTTAAATGGCATTTACTGA
TTCCAGACATTGCATCTTCTTTCAGTTGGATGTAACTCATTTATGCTCTC
TATGTCATATGAAGCAGGTAAAAGGCAGTGATACATCTACTGCTGAGTCA
GGATCTGATGCTGAAGATATTGCTTCTCCAAAATCAATGAGGAGTTATTC
ACATCTTCGACTGACTCCTGTTCATGAAGAGGTAGATTTTCAAATTTCTT
TTTGTTATAGGTTTAAGGATTATTCGGCGAACATGACAGCAGGCTTTGTA
TAAACAGTTTTGTTTTGAAGTATAAATTCGTTTCAGTGGGAACATGTTAG
CAAGTTGGGTTTTTGATTAATTTTTAGACGATTGCTGTTTTCTTCTCTGG
TCTGTGAGTATGCATTACATGTAGGCACTGTTATCAAAATGTTTCAGAAT
TTATCCTCATTTGTTGTTTTAATTTGTTGCAAAATACACACTAGGCCAAA
GTAATTGGAGCTATTCATTCTAGTGCCTTCTTGGGATATGATGAATACAT
ACCAATGGTTGACAAGGCTGTTGATGCTGGATGGAAGAAGCAATCATCCT
TCAAAAAGCTTGCTGCTTCTACAGGTTGGAATTAAGCTTAACTCACATTA
AAGATACTGCTTTAAGAGTTTACATTTTGTTCTAAAAGAGTGTAAAACAT
TGTTTTAATATAGTCTCTACACATTAATATTTGTTGGATTGAGCTTGTTG
AAATTGTTCGAGAATTTTAATAATGTTTTTCATAATTGGTTAAGGTACGC
CTGTGCCCACACCTCCACCACTGGCCTCTCAAAAGACACCAGAAGGATAT
CATGCAAGGATCAAAACAATTCTTCTGACTTTTTTCATGACCCTTTACAC
ACTCTTTTACTCGGTGGCCAGGCATGTAATGAATATATATTCTGGAATAT
CTTCCCTGGATAGCCAAAATGTTCAGGAAGTTGCCACTGGAACAGTGCCC
AAGGATGAACTATACCCCCCTTCACCAACTTCAAAATTTACCGAGACAGA
GTTGCTCTCATCTGTTTTAAAAAGACTAGGTGAACTCGAAGAAAAGATGG
ACACACTCAAGGCAAAACCCTCTGAAATGCCGCATGAGAAAGAGGAATTA
CTCAATGCTGCTGTTTGCCGTGTGGATGCTCTAGAAGCAGAGTTAATTGC
AACTAAAAAGGTGAAATCATTAATGAGAAGTTTATTCTGTTTGCTCGTTT
ACTACTGGTTTCTGTTTAAAGTTTATGTGGCCGAAGCTGTCCTTGGGTAA
TATAGTGGCTTAGACGACCAACTTTTCATATATACATGCAACTTGCAATT
CTAGTTGAAACACTAAATTGCACGGGTATTTCTAGTTAAACTTCAATACT
TTGTTGCTTAGTCTGTAATACGCATCCTCAATATTTACACCCATTATGTA
TCACCTGAAGAAATATTTTAAATCTAGTAGCACGTGGTTGTGAATTCTTT
GTTTCTAGGAATGTTTCGAAAAATTAAAATTTCTGCCTGGCTTGTGAATT
TTTGCCTTGGAATATTTGTTTGAAGCACCTTCCATTTTCTTTGTTTAATT
AGCTTTGGTATTTTATTGGGTCATTACTTCTTCCCTTACAGGCTCTTCAT
GAAGCTTGGATGAGGCAAGAAGAATTGCTTGCTTATATAGACTGTCAAGA
AGAAACTAAGTTCCGGGTAAGTTATAATGTCTTTGAAGGGATCGGGCATC
ACTTTATAACTGTCTCCCCCCCTCCCTTTCTATCCTCACACAAAATCGCA
CCCACACACCTTTATAAAAGAAAACCGCTTGTACACTTAACATAGTTTTG
TTGGCATGCATGAGCAGAAGAAGTCTTGTTGGTGA
Sequence Length:
12885
Sequence Checksum:
97edf7dfd66601f1b596815928b14884
View location in JBrowse:
Cds:
>DCAR_028970cds ATGTCAGTTGACTCCGACGCAGGAGCCAGCAGCAGGGACTGGCTGTTTCC ATCGCCTGCAGGTGGCAAGCAGCAGCAGCGTGACTGGATTTATCCGTCTC CATTGCTGTCTTCTTCGCGTCTCTCTAAAACGCCAACTCGAAGATTTTTC TCCACTTATCCCCCTCCTCCTCGTGCTCCTGCAGTCCCTGTTGCCACCGT GACAACGCCTCAGAATCGGTATTACCCTGCTTCTGCTGGTATTCGTCGCA GAATTAATTTTCCTCGTCGATCATTGAAGGAAGATGTTTCAGTGGAGGAG AAAAAAGCAGTACCGGCTTCCAATGCTGCTAAGTGTCTTAAGGCTGCTGA TGCTGCTGCTTTTCGGTTCAAATTTAGCTGGCAGCGGTTTGTTGTGATTG CGTTTCCAGTAGCTATTTTGGTAGCTTTGATTTCTTCTCTAGTTAACAAG AATTTCTCATTGCAGAGTCAGGTCACAGATTTACAGCATCAAATTTATAG GCTCAATGGGAGATTACGTCTTTGCAGTGGTTTGGATTCGTTAAATTCAA ACGATAGCTCATATGAGGAGAGTGATACTGATAGTTATTATAGCAAAAGT CTGAAGATAACAGCTCTAGCTGTTTCCCTCATACTTTTAGCCCTTCCGTT TTTCTTCTTAAAGTATGTGGACTACGTTTCAAAGAAAAGTAAATCACCAG ACAGCATTGCAGAAGAAGTATCTCTAAACAAGCAGCTTGAGTACAAAGTG GATGTATTTTTGTCGGTCTATCCATATGCTAAGCCACTGGCATTGTTAGT TGCAACGCTGCTGCTGATATTTTTAGGTGGCCTGGCACTGTTCGGAGTAA CAGATGATAGCTTAACAGATTGCCTCTGGTTATCTTGGACATTCGTTGCT GCCTCAGGGAATCATGCTGACTCTGAAGGTCTTGGCCCCAGATTAGTATC AGTCACCATTAGTTGTGGCGGGATGCTCATATTTGCAATGATGCTGGGAC TTGTTTCTGACTCAATTTCCGAGAAGCTCGACTCCCTGAGAAAAGGAAAA AGTGAGGTGGTTAAACAGAATCATACTTTGATTTTGGGGTGGAGTGACAA GTTGGGATCACTATTGAATCAGTTAGCCATAGCTAATGAGAATTTAGGCG GAGGGATTGTTGTTGTCATGGCTGAAAAAGACAAAGAAGAGATGGAGGTT GACATTGCTAAAATGGAGTTTGATTTTAGAGGGACATCTGTCATATGCAG AAGTGGAAGTCCCCTAATTTTGGCGGACCTCAAAAAGGTATCTGTTTCGA AGGCACGTGCAATAATTGTCCTAGCAGAAGATGGGAATGCTGACCAGAGT GATGCTCGTGCATTGAGGACTGTTTTAAGCTTAACAGGAGTAAAAGAAGG ATTGCAAGGACATATAGTGGTGGAACTGAGTGATCTTGACAATGAGGTCC TTGTAAAACTTGTTGGTGGAGATCTTGTTGAGACTGTTGTAGCACATGAT GTGATTGGTCGCCTGATGATACAATGTGCCCGACAGCCAGGTCTTGCGCA GATTTGGGAAGACATACTTGGATTTGAGGGTTGTGAGTTCTATATCAAAA GATGGCCACAGTTGGATGGAATGCAATTCGAAGATGTCTTAATCAGCTTT CCTGATGCTATTCCCTGCGGAGTGAAGGCTGCATCCCATTTTGGCAAAAT TATTCTGAACCCTGAGGATTCATATATTTTACAAGAAGGCGATGAAGTTC TCGTCATAGCTGAGGACGATGATACTTATTCTCCAACAAAATTTCCGACG GTCCGAGAAGCACCATTCATACACATATCCCGACCAGAAAGAAAGCCTCA GAAGATTCTACTTTGTGGATGGAGGCGGGACATTGATGATATGATTGTGG TTCGGAGAGGGAATTTGCCAAAAGACTTCATTGAAGCAGAGTCTGAGGAA AGGATTCTGTTTTGTGGTTGGCGAAGAGACATGGAAGATATGATTATGGT ATTGGATGCCTTTCTAGCCCCAAATTCAGAGTTGTGGATGTTCAATGACG TTCCTGAAAAGGAGAGAGAAAAGAAGCTGATTGATGGAGGCCTTGACTTG AATCGACTGGTCAACATAACGTTGGTTAATCGTGAAGGAAATGCTGTAAT ACGTCGTCACCTGGAAAGCCTTCCTTTGGAATCTTTCAATTCAATTTTAA TATTGGCTGATGAATCAGTAGAAGATTCAGCCATTAAAGCTGATTCTAGA TCTCTTGCCACCTTACTCTTAATCCGTGATATTCAGGCCAAACGTCTTCC GTATAGAGAAAACAAGGTCTCCCACGTCCACAGAGATAGCTTCTCACAAG GTTCGTGGATGGGTGAAATGCAACAGGCTTCAGATAAATCAGTAATTATC AGCGAAATTTTGGATCCAAGAACCAAAAATCTATTATCAATGTCAAAGAT CAGTGATTACGTTTTATCAAATGAGCTTGTCAGCATGGCACTGGCCATGG TTGCAGAGGACCGTCAAATAAATGATGTGTTGGAAGAACTCTTTGCAGAA GAGGGAAATGAGATGCATATAAGACAAGCAGAACTTTACCTTCATGAAGG TGAAGAGTTGAGTTTTTTTGAGGTACTCTTACGTGCTCGTCAAAGGAGAG AGATTGTTATTGGTTTTAGAACAGCAAATGCAGAGAGAGCCGTTATCAAT CCGCCAAATAAAATGGAAAAAAGACGGTGGTGGCTGAGTGAATTAGGTTT TGAGGGGTCCTCTGGTAATGAGGAGAGAAGAGAAAGAAAATCCGACTATG AAAACTCAGAGGATGAAAGAAGGACGAGAATTGGCTCTTTAAAAAAGAAG GCCCTAAATGCATCTTCCAAGTTTAAGCATTCTCTCAAGAAAAAGGGCAG CAGACGGAAAAGTGATGGCCGAGTTAGTTCTGTTTCTATAGAAGATATTC GCGATGCTGATGAGCTACGAGCTGTGGATGCATTTCGCCAAGTACTTGTC TTAGATGAACTGCTGCCTGAACAACATGATGATTATCATATGATGTTGAG ATTTTTAAAGGCGAGGAAATTCGATATTGAGAAGGCGAAGCAAATGTGGG CTGATATGATTCAATGGAGGAAGGATTTTGGAACCGACACAATTTTGGAG GATTTTGAATTTCATGAGTTGAATGAAGTTTTAAAGTATTACCCACAAGG TAATCACGGCGTGGACAAAGAGGGAAGACCCGTATATATTGAAAGATTAG GAAAAGTTGAGCCTAACAAACTTATGCAAGTAACAACTATGGATCGGTAC ATAAAATACCATGTGAGGGAGTTTGAGAAAACTTTCAAGGTTAAGTTTCC AGCATGTTCTATTGCTGCAAAAAGGCATGTTGATTCAAGCACGACAATTT TAGATGTTCAGGGAGTGGGGTTGAAGAATTTCACGAAAGTAGCACGAGAA CTCGTTATGCGGCTTCAGAAAATTGACGGCGACAACTACCCTGAATCGCT TCATCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAGACTGCTCTGGA GTACTGTCAAGTCTTTCCTGGATCCCAAAACCACTTCAAAGATTCATGTT CTTGGAAACAAGTATCAGAACAAATTGCTTGAGATTATAGATACCAGTGA ATTACCAGAATTTCTTGGTGGTATCTGTACTTGTGCAGATCAAGGGGGTT GTCTTCGTTCTGATAAAGGACCATGGAAAAACCCTGATATTTTAAAGATG GTTCTAAGAGGGGAAGCTGGGCATGCCAGACAGGTTGTTAAAGTCTTAAA CAGCGAAGGAAAGGTAGTTGCTTATGTTAAGCCTCGCTACCCAATGGTAA AAGGCAGTGATACATCTACTGCTGAGTCAGGATCTGATGCTGAAGATATT GCTTCTCCAAAATCAATGAGGAGTTATTCACATCTTCGACTGACTCCTGT TCATGAAGAGGCCAAAGTAATTGGAGCTATTCATTCTAGTGCCTTCTTGG GATATGATGAATACATACCAATGGTTGACAAGGCTGTTGATGCTGGATGG AAGAAGCAATCATCCTTCAAAAAGCTTGCTGCTTCTACAGGTACGCCTGT GCCCACACCTCCACCACTGGCCTCTCAAAAGACACCAGAAGGATATCATG CAAGGATCAAAACAATTCTTCTGACTTTTTTCATGACCCTTTACACACTC TTTTACTCGGTGGCCAGGCATGTAATGAATATATATTCTGGAATATCTTC CCTGGATAGCCAAAATGTTCAGGAAGTTGCCACTGGAACAGTGCCCAAGG ATGAACTATACCCCCCTTCACCAACTTCAAAATTTACCGAGACAGAGTTG CTCTCATCTGTTTTAAAAAGACTAGGTGAACTCGAAGAAAAGATGGACAC ACTCAAGGCAAAACCCTCTGAAATGCCGCATGAGAAAGAGGAATTACTCA ATGCTGCTGTTTGCCGTGTGGATGCTCTAGAAGCAGAGTTAATTGCAACT AAAAAGGCTCTTCATGAAGCTTGGATGAGGCAAGAAGAATTGCTTGCTTA TATAGACTGTCAAGAAGAAACTAAGTTCCGGAAGAAGTCTTGTTGGTGA
Pep:
>DCAR_028970pep MSVDSDAGASSRDWLFPSPAGGKQQQRDWIYPSPLLSSSRLSKTPTRRFF STYPPPPRAPAVPVATVTTPQNRYYPASAGIRRRINFPRRSLKEDVSVEE KKAVPASNAAKCLKAADAAAFRFKFSWQRFVVIAFPVAILVALISSLVNK NFSLQSQVTDLQHQIYRLNGRLRLCSGLDSLNSNDSSYEESDTDSYYSKS LKITALAVSLILLALPFFFLKYVDYVSKKSKSPDSIAEEVSLNKQLEYKV DVFLSVYPYAKPLALLVATLLLIFLGGLALFGVTDDSLTDCLWLSWTFVA ASGNHADSEGLGPRLVSVTISCGGMLIFAMMLGLVSDSISEKLDSLRKGK SEVVKQNHTLILGWSDKLGSLLNQLAIANENLGGGIVVVMAEKDKEEMEV DIAKMEFDFRGTSVICRSGSPLILADLKKVSVSKARAIIVLAEDGNADQS DARALRTVLSLTGVKEGLQGHIVVELSDLDNEVLVKLVGGDLVETVVAHD VIGRLMIQCARQPGLAQIWEDILGFEGCEFYIKRWPQLDGMQFEDVLISF PDAIPCGVKAASHFGKIILNPEDSYILQEGDEVLVIAEDDDTYSPTKFPT VREAPFIHISRPERKPQKILLCGWRRDIDDMIVVRRGNLPKDFIEAESEE RILFCGWRRDMEDMIMVLDAFLAPNSELWMFNDVPEKEREKKLIDGGLDL NRLVNITLVNREGNAVIRRHLESLPLESFNSILILADESVEDSAIKADSR SLATLLLIRDIQAKRLPYRENKVSHVHRDSFSQGSWMGEMQQASDKSVII SEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAE EGNEMHIRQAELYLHEGEELSFFEVLLRARQRREIVIGFRTANAERAVIN PPNKMEKRRWWLSELGFEGSSGNEERRERKSDYENSEDERRTRIGSLKKK ALNASSKFKHSLKKKGSRRKSDGRVSSVSIEDIRDADELRAVDAFRQVLV LDELLPEQHDDYHMMLRFLKARKFDIEKAKQMWADMIQWRKDFGTDTILE DFEFHELNEVLKYYPQGNHGVDKEGRPVYIERLGKVEPNKLMQVTTMDRY IKYHVREFEKTFKVKFPACSIAAKRHVDSSTTILDVQGVGLKNFTKVARE LVMRLQKIDGDNYPESLHQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHV LGNKYQNKLLEIIDTSELPEFLGGICTCADQGGCLRSDKGPWKNPDILKM VLRGEAGHARQVVKVLNSEGKVVAYVKPRYPMVKGSDTSTAESGSDAEDI ASPKSMRSYSHLRLTPVHEEAKVIGAIHSSAFLGYDEYIPMVDKAVDAGW KKQSSFKKLAASTGTPVPTPPPLASQKTPEGYHARIKTILLTFFMTLYTL FYSVARHVMNIYSGISSLDSQNVQEVATGTVPKDELYPPSPTSKFTETEL LSSVLKRLGELEEKMDTLKAKPSEMPHEKEELLNAAVCRVDALEAELIAT KKALHEAWMRQEELLAYIDCQEETKFRKKSCW*