Resource Type:
Gene
Organism:
Name:
DCAR_029238
Identifier:
DCAR_029238.gene
Locus Tag:
DCAR_029238
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_029238, is a part of gene, DCAR_029238. |
| The genetic_marker, MK003951 K1395, is located in gene, DCAR_029238. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_029238 | DCAR_029238.mRNA | mRNA | DCARv2_Chr9:3629988..3644927 |
Sequence:
ATGGAAAAAAGTGAGCCTTCGTTTGTCCCCGAGTGGTTAAAGAGCAGTGG
AAGTGTAACGGTTGCGGTTAGTACAAATCACCGCCAAAATGATCATATGA
CATTAAAGCCGACTAGAAATAAATTATCAGCAGATGTTAGTGCTCATGAC
TCGGGACGTTCTCCTGTTTCTGATAGAACTACGTCATCTTACTTCCGTCG
AACTTCATCTAGTAATGGTTCTGGTAACTCGAGGTCTTATGGAAGTTTTG
GTAGGAACAACCGAGATAGGGGCTGGGATAGAGACAAAAATGAATATCGT
GATCATGATAGGTTGAGGCTAGGTGATCGTAGGCATCAAAACTATTCTGG
TTCATTAGGGAGCGATTTTTCGGATAGGTTCGAGAAGAATGGCTTAAGAC
GAACTCAGTCTTCTGTAGCGGGGAAACATAGTGAGCCATTGTCCAGAAGA
GTATCAGCTGACTTAAACAGTTCCAACAAAAGCAACTACAACAATAGCAG
TTCTCGCCTTTTGGGGAGTAGTGGCATCAGCAGTGTGCGGAAAACTTCAT
TTGACAGGGATTTTCCATCTCTTGGAGCTGATGAAAGGCAAACAGATCAT
GGGATAAGAAATATTCCATCTCCTGGATTGAGTACGAACATGCAGAGCTT
ATCAACTGGGTATTCTACAGTGGCTAATGAAGTTGGGTGGACATCGGCCC
TAGCTGAGGTACCTGTGATGGTTGGAGCCAATGGCCCCATTACATCATCC
GTTCTCCAAGCTGCTCTTCCAAGTTCAACTTCTGTGCCATCAAGCACTGC
AGCCAGCCTCAATATGGCAGAAACTTTGGCACAAGGGCCCCTTCGTGTTG
ACACTGCTCCTCAGGTAAACTAATATTTTTTTGATTGATGGACCTTTGTT
GAGTTATCCCTGCTTATGTAATGGGTTTGTATTATGACAGGTATCAGTCG
AAACTCAGAGGCTCGAAGAATTAGCTATTAAACAGTCTAGACAACTCATT
CCGATGACACCTTCCATGCCTAAATCTTTGGTGAGACTGTTGTCTTTTTA
TTAGTTGGATATTTTGGTTCCTGTATCATGTCATGTTAAAACGTACTGGT
TGTAATTGTTTTTGTCTACTATCTTGTTCCTGTAGTTCTTGTACAACCCT
CTACCTGCCCTTCTGAAAAAGGAGTATTGTTGTAGGTGTTTAATGACTTT
AGTTGTGGGTTTTTAATAGAGTTGCATTTTGGCTGAGCCCTTCATTATTT
GCTAATTGCTAATGGTGAGATGTCCGTTGGATAAACATCTTATAATGTTG
TGTGTATAAGTTTCTGAGATTAAGATGTGTAAAGGCCTAGTACCTTATCT
GTATCACAACTGAATTTGATTACGTTTATGCATATGTAGTATTGCAATCA
TCTAAACACTTCCGGCAATTTTTACCCTGATATGCCTTTTAAATTTGTGG
TTTGTACAATAGTTGCCAGCCTTCTCATTGTTCTCGGTGCTTGATTAGCA
CCCTATATCAATAGGGATTACCTGTCAACTAATGAACTGAGGGATTATTC
TTGTATATCAGTAGGGATTAATGAGCTGGGGGATTAATGAATGTTGTAGT
TTCTTGACCTACAAACTAATTGAGCAAAAATAAAGTTTTCTGCCAAATTG
ATGTAGTTCAAGTTTCATTTTGGAGAACATTATTAGGAAAGCAACCAAAA
TGTTAAATTCTTAGTAAGTGTATGATTGGATGTTTGTTTTTGTTCTATTA
CTATATATTAATTTATAGTGTAAACCATAGTTGTTTTTGGTAGGTAGACA
TATTTGGTATTTAATTTTTAAATATTTTGGAAAGGGAGCTGTTAATTGAA
CTCTAGACTACTTCTAGCACTTGGAGCAGCTTTGCCAACGCACTCCTGAT
TCTCGTAAACCATTTAATCTTGACCAAACTTTTAGCTGATGAATATTATG
ATTTTATGGTTGGCATTCATTTAACTTTCTAAATATTTCTCTCTATAATC
TTTCTCTTTGTAAAATACATATGTAAATGCATAGATGTGTCAGTATTTGC
CAAGTATGGACAGTATGTTGTGCTATTCTTTCTCTTCTCTCTGTATATAA
TCTACTCCTATACATTATAGTATTTGATTATTATAACTCTATAATTCGCC
ACCTTACGAGGATGCTCTATGTTAATGTAATATAATATTTGTAGCATTAT
TAAGATCTGATCATCCAGAAGTCATCAGAACAATGGTTTTGGCATATACA
GTGAGGGAAACTACTTATTTTATACATTGTAGTCTGTCAATATAAACTAA
AATCTTGAATTTATTTTCAGTAATTAAGTATTATTTGCTGACAATATTCT
GCTCTTTGTTTTTGTTGATATCTGTACCCTGCCTCTATTTGGTAACTCCT
ATTGAATGCTGATCAATGACCTGCTTAGCTGGACGTATAGTATCACTAGG
TATATTCGCAATTATGGCGAATTGGTGAACTCTATGTAGTGCATCGGGTA
CTTTTGAATGAGCAAGGTAATATGTGTAGTGGAAAGCTTCCGGGGATCAT
GTTTTGGTGTTGCAGTTGGTACATTTAAATGAGAAAGATACTGATTTCTT
TTCCGAAGTGGTTAAATTCGTAGAACAGAAGTCCCAAAATAATAGAAATA
CATGCTTGGGTCCTCAATTAGTGCATGGGTAGTAGTCACGTTGTTACTAG
ACTATGTTACTTTAGTAGTTAATCCATAATTACCCTTAATAAATATGTAG
GACAACAGTATAATTAGATGGCAATGGTTCCAACTTCATGTTTACAATAT
GTGTTGTCCATGTCCTGGTTAGCATGGCTGGCAGCAATACACATCTTATT
TACCTAATATCAATAGCAGAAGAAATGGACAAGGGAAAAGGAAGCAGCAC
AGATTAAGGGAGATGAAGGGAGGTTTATTATTAAACAATATGTAATGTGA
GAATCTGAGTCTGGCTGCATTTGGGATGCTTAAAAAAATAGGTGTGAAAA
GAATCCAATTAGAGAACAACTCTGTGGAAATTTCAGCTTTCATCGTTTTA
GGTTTTTCCTCCTCACAGACCTATTATTAAATATCACTTTAATGGATTGA
ATCTTCAAAACATGTCTTTACTTGTGTATCTATACATAAATTAGCATTCA
ATTACTATGTTTATTTGTTATGATGCGTGAGAGTTTTCATGATGGCTATA
AAAGGGAATGGAAGGGATTTCAATCGGTAAAAGCAGGGAAAGAATGACAA
AGATTATGGTTCTGTATATGGTCCATGATGGTTTGTTTCAGCTCTATACA
GAATAGTGTGACAACTCTCCTCTTAGTGGGAGACTTCTATTGTGAAACAT
CTTGGGGGTAAAAGATGTCTTATAAAAATGTTATTGTCATCATAAGACAT
AAGTACATAAGATAAACTGTTATGGCCGCGAACTGATAACCTAGGCCTTA
TTTAAAAGTGAGCACATCATAATATTCAGTAATGTTACTTTTTCCATATT
AATCTATGTGCAAGGAAAGCACTTTGAAATTTATCTGAATTTGTATTTGT
CTGAGATATGTTTCTTAATACGTGCTGTTTATAAATTTCTCAGGTGTTAA
ATTCTTCAGAGAAATCTAAAGTTAAGGTGTCCCAACAGCAACACCAGACC
TCTTCTATTCACTCTTTGCGTGGGACACTTGAAAAGTCTGATGTGCCAAA
GACATTGAGCTTGGGAAAACTTCAAGTCCTTAAACCTGCACGAGAAAGGA
ACGGTGTTTCTTATCCAGAAATAGATAACTTGAGCCTTACCAATGATAGT
ACAGTAGCAAATAACCCGCTGACTACTTTACCAGCTGTTGTACCACCTCC
TTCGAGGACACAAATCAAGAACCCAAACCCTTTGAATGTTAATCGTAAGC
CTGCAGCTATAATGGTCCCGGCAACATTGGAGAAAAAACCTTCAGCTCAA
CTTCAGAGTCGAAATGAATTCTTTAATCTTGTGAGGAAGAAGTCCTTGAC
AAAGTCCTCTTCTGTTGCTGATTCTGTCTCTACTGTGTCACAATTTGTTG
TGGAACAGCCTAGTGAAACTCAAACTGCTTCTCCCCTTTCTCAAGGGAAA
GATTCTCTATCTGCAAACCAGTCTAATATGGACCATTATAAAGAGAACGT
AAATGCCTTGATCAGCAACATAAATAATGGCAATGGGCATCAGCAATCTT
GTGGCAATGGAGAGACTCGTTCAAGATCTGACATGATTCTTTGTTCAGAA
GAGGAAGAAGCTGCATTTTTGCGGTCACTTGGTTGGGATGAAAATGCTGG
AGAGGATGAAGGCCTTACAGAGGAAGAGATCAATGAATTCTACAGGGATG
CAAGTAAGGTAAGAACTTTTTTAAATGCTTCTAATCCTTTAAATAAGGAT
CTAAAATCATTGTTCTTATTGAAGTAACATATTGCTGATCAGAACAGTTC
TTATATACCGAGTATTAGTTATTTATACTGTTCTAATGCGGAACTCAATC
ATAAATTTGTTGTTTGTTCTTTCGTTTTTCAGTATATTAAGCCTGGCTCA
TCCTCAAAGACTTCCCTCTGACTGAACTGAAAGCCTTATTGCCTGCCAAT
CTTGGACGTCTTTCACTGAGTTTTTTGTCAGACTCGAAGATGGTGGTAAA
GTTTCTTTTGGTTGTATATGCTCTGGTGGTAAAAAATCTAAAGGGATCCA
GTCAGGCACATTAGATGGTATTGTGATATAATGCTTCTTCTCAACTAGTA
CAACATTCTGAGATTTAGAAAGACTGAAGATACAAAAATAGGATTTTAGG
TTTCTATGAAACTGTGAAGGAATGTTGCTCGGTTTTGCGAATTCTGAATA
GTTGATCAGTTTCATGGATTTTTTGGGAGGTGTTAAGTTTTGAAGTCATA
TAGATTATGATTTACATACAAGTTTTACAGCCAAAAGTAGCATCTTCTTT
ATATCTATATATGCTGTTGTTTTGATCTATAATTCATATCAGGAAATAAA
ATTTTCCTGAGCATTTTTTTTATTTTTGGAGCAAATTGTATCGGAGTTGC
ATCTTTATGTGCATGCAGGGCAGCAGCCAGCAGAGCCAACTCACAACTCA
AATTGCTCCGGAAATAAAAATTTTGTTCTAGAAATAACATTTCCGTTAAT
ATTTTGTTGTATTCATTTGTTGTGTTTTATTTTCTGAGTTGTACTATTAT
TTTGCAGGGCTTGTGGATTATATTAATATATACTTGGCATTGTAAGAATT
GTGAAGGCTTATACATAGATAAAAATAGAAGAGCATGTATTATTATTGAC
TATTTTAAATAATCAACAAAAACAAGTAGACTTGGTTAAGCAAATTCTAC
TTGCACATAGTTTTTGTTTATCTTTCAATAAATGATAATTAAATACTAAA
TACTTTTTTATAATTTATATTTATAAATTCAAGATCTTGTGTATATAATG
AATTTTGCATCCATTATTTGGCATTTGTTGTCTAAAAATATTTATATAAA
GTGAGTGCCTAATTTAAGATGATTTGTTGTATAGCGTGGGTAAATGCAAA
ACTATAATGAACCTGATTTGGTGTGTGTCGTTTTTAAGAACATATAGGAA
ACATTTTGAGATCATAGTGTGTGTGTGTTTTTACAGGATTTAACTCTCAC
TTATTGAAAGAATTTGTCATGGACTGTGTCTCTTGCAGGATGTAATCCTC
AACAAAAATGACAATTTTGAATGTTAAAATACTGATCGTCTAACTCATAT
ACGGTTCAACGAAAACAAATAAAAGGACTAAACCTTACGTCATATGACCC
CAAAACTATTTCTTACCATTTAGCAAAAAAAAAAAAAACTATTTCTTACC
ATCTCGATAAATGTATCTATGATATATTATTAAAGTCGAAATATTAAAAA
TTTGTGTGATCGGTTGTGGGCCGAATTATGTGTCTATTTATATAATCAAC
TATACTTTTTAACTAAAAATGTTATGTGATCGGTTGTGGGCCGAATTATG
TGTCTATTTATATAATCAACTATACTTTTTAACTAAAAATGTTATTTTTT
ATATTTTATCACTGAATAAACTCAATTCTCTGTAAATAACCTTGGACAAT
ATAGTAACTATCCTTTTCTTTGGTCTAAATAGTAACTACCCTTTTTAAAT
GAAACACATTATCTTTTTCAGTTTACTAAATAAAAAACTGATTTTCTAAA
AATGACACATGCAACATACATATAAAAACATAATATTAATATATATAATT
ATTAATAAACAACCGATGATATGTTTCAACTAAATACATTCATGTTATTT
TTAATTACTTCATGTTATCACTTTAAAAGTAATATCATAGATCTATCATC
TATACTATCTATTTTTAATATATTATATAATATTGTTATTGTTGTTGTTG
TTGTTGTTCTATTAAAACTGAAATATTAATAATTTTATTGATCGGTCGAG
TTATATCAGCCGATCGGTATTATTCTAGGGGTCTCATTAATATATAATGT
GTTCTAATAATTTTTTTATTATCAATTAAACCAAAACATTTAAAAATTCA
ATCCAATTTGTATTTCAATTTAAATTTAAAGTATAGACCAGGTTATAAAA
CATGCAATTATTCAAAATTGTTGGAGAACAAAATTAAATACATTTTCATT
AGAAAGAAGAAAAACACTTCAACCGGGGGCTTATCAAAATTAAAATTATC
TTGCATAACAGTATCATTGTATATTGTATAACAGTATAATGGGTTAGGCC
TGTCAATGGAGCGGAGCTCTGACCCGATCCAGTCCGATCCGGGGTCTTCT
TAGCGGATTTGGATTCATCAAAAAAAAATCTGATCCGATAAGAGAAATCC
GATAATAAATGGAGCGGATATGGATTTAAGGTGATTCGATCCGTTAATGA
TCCGATCGGGTAGAATATATATATATATACATACATATATATATATATAT
ATATATATATATATAATTATCTTGCATAACAGTATCATTGTATATTGTAT
AACAGTATAATGGGTTAGGCCTGTCAATGGAGCGGAGCTCTGACCCGATC
CAGTCCGATCCGGGGTCTTCTTAGCGGATTTGGATTCATCGAAAAAAAAA
TCTGATCCGATAAGAGAAATCCGATAATAAATGGAGCGGATATGGATTTA
AGGTATTATGTAAAATATATATTAATTTTTTAATTATAGTAGTTATATTT
AACTACGGATTTTCTAGTGTGTGACTACTTTTATTTAAGTAGTGAATTCC
TATTGATTCTCTTTCATTAATATAATGGCGCTCTATATGCACAAAAATCT
CTATCAATCAAAATTCTTCAATTAAGTAAAAAGTAGTTGTTAGTATGTGG
TCATGAACACACATTAGAAAGATCCTTTTAATTATAATAGTCATCAAATA
CATTTATGTGAGTCCTGGGTTGCGATTGTGTTTGATTATATATATATATA
TATATATATATATATATATATATATTATAGGGTCCTACTCCAATAACAAC
TACTAGAATAGAAACTAAATAGAAATCAATGCGATTAAGTAGAATGATGC
GGGTTTTGGGACCGGGGATGGACTCCAAGATGGGCCGAGACGAGGTCTAA
GTGGGGCCTAATAGGGCCGGGTCGGGGCCTAGTGGGACCATGGTGGGGCC
AAGGTTTGGCTCTTTGAGACTGTCTAGAGCCTGTGCAGGGTCTGTGAGGA
GTCTTGGCGAGGCCCTAGCGGGCCCGGATGGATTGACTAGGGGTGAGGAT
GGGCCCTAGGTGGATGATGACATATAGGGGTGGGTGAGGTCATTTAGGTA
TAGTTTCTCTTAGTTTCCATTTTAGTTTTTATTTTAATAATTTCTATTTG
AGCAATTGCCTATATATATACATACATACATATATATAAAAGCACGTATC
TTGCACGAGTTTCTATGATAGTATACAATTTTTTTACAATCTAAAATCAT
TCTATTATGTTTACATAATATTAGGATATTACATGTGAAAAATCATAAAT
ACAAGGTTATCATAGATAAAAGTCAAAAACGTGAGGGTACAACTGATAAA
AATTTATTATACAATGAAATCTAGGAGGATATCCTAACAAATATATCATT
TTAATAAAATAATAGATAACATGGAATCTTGCTATATGTGTCTAGAAAAT
ATAAGAGGTTGGTTATAATTTTAAAAATACACAATGTCAGAATGAAATGA
ACAAAATCTTATATATAATCTATAAATTTAAATTATAATATAATTTATTA
AATTTTAGCTAAAATTTTTAGGGGATTTCTCCCGTATACGTGTTTTTAAA
AGTTATTTACAGGAATATAGTGGTCTTAAACATTTCGCACGCATACGGTT
TCTCTTACGTTTTCTTCTAATTTTGAGTTGCTTGTCACTTTCATTTCTCG
CTCTCTCTCACAAAATGACATGCACTGGGAAATAGCCACCGCCTCCTCCG
CCGCAGGCACCTTTTCTGCCACTAACCCTGGCACTCTTTCTTCCCTCTCT
CTTCCACATGCCGTGAAATCACCGAACTCCTTTTTTCCTTAGTCCTATTC
CACATCGGTGTTAAAATAGACTGTGTTTGGGCATAGTATGGCGACGGCGG
AGATTGGGAAATTATCGGGGGAGATCTGGTGGCCGCAACCGCAATCTGTG
TCGGTGGAGATGTAGCCGGTATGGTGGGAGAGTGGCGGTGGTTGGTTACT
TTTGTGTTGATTTTTAGTTCGTTGTTTTAGTTGATTTTTTGGTTGCAATA
CTTGTTGATTTTGTTTTTGTGGTTGTTTTTATGGTATTAGTATTGATGCC
GTATGGGCATTCATTTTAAGCCTTTGCAACTAGTTGCAACTTATTATGCA
AATATATGTATTTTTTTTAAAAAATTTCAAGTTGTATATATCGTTGCTAG
CAGTTGCAGATATGGTTATATATGCAATCATCGTATTTTTACAGTTATTT
TTTGGAACATGGATATTTTTACAATTTGTTTTAAAAAGTGATAGTATTTT
TAATTTTTTTTTAAAACTTGATTATTTATAGAAAAATCCCCAAAATTTAA
AGACCTCGGGGCATGCTCTTGCGAAAAATATATTCATCACATACTGACAT
AGACTGTCAAAAAATAAACGAGAACGAATTGGCACTTGTACAGTAAATTG
GGGGTTAGGGTTTTGAAGCTCGTTAATTCAAGCAATGGGAAGCACCGCCG
TTGCCGAGAAGACTGAAGAACAGCTCCGCCGTGAAATTATTGAGCTACGT
CGCCAACAACGCGAGGTCTCTTCTCTCTACCTGTCTCCTCTCTCTCTCTC
TCTCTCTCTCTCCCTCTCCCTCTCCCTGTCCCTCTCTCTCTCTCCCTCGC
GCGCGCGCCCCTCAGATATATTTTCACATTTTTGAATTCGACTAATCAGC
ATTATTTATCTTTGGACAGATTACAGAGAGGCTTCGTGATCCTCGGGGAA
TTCGACGTGGTGGGTTATCAGGTTCAGGTCCTGGTAACCGCGGTTTCGTA
CCTGGTGGAAATCGACAGCGCAATTTTGTAAGACCTGGATTCTGTAATTG
TATTAGAAATGTTGTTTGAACTACGCATTCTATTTATGTCTCAAGTACCT
GGATAAATTAAGTAACCGGTTAGCTAGTAGTCTTGATTAATGATTGCATA
ATACTTTTTTTGGTGTCAACTGTAATAGATACTCTGTTTCTCTAACTTTG
CGTAATCAGGAGCCTTGATAAAATTGAAGTTGAATAGTTTCGATTTTGAT
AAATATAATTTGTCAGTTCCAGTTATAATGGATACTGTGTTTCTTTTACC
TCGGGTTAATTAATAAACTTATATGGTCCGAGACTATTTAAGTATTTATT
AATAGAGGTTTTACAGTATAGTCGATGTAACTGAGTGAAGAAATTGTTTT
GTATAGGCTAATAGGAATGAGGAGAATCAACCTGCGCCAAAAAGGCGTCT
TTCTTCTGCCGTGGTGAAGGTGAGGTCTAATCAGCTTTATTCGCATTTTA
ATTGTGTTTTTGTCTGGTTAGGATTATGATTGGTTTTGTTTTTTGGTGTT
GAATTTGAGTGAAGATTGAAGATGGGGAGATTGTTGATGACGATGATGTA
AAGGACGTAGGAAACAAAGAATCTGCAGTGGAGGAAAAGGAAAGCATTGA
AGTTGTCGAGCCGAGCCAGAATGAGAAAATGAATCCTACTTGGCCTAGGA
GGGTTGTTGATCAGAGGCCACGAATGATGGTATGAATTGAAGTTGTGATT
GAATTGGTTGGCGGGGTTATTAAGATTTTTTTTTCTTTTTGTTTACTGGC
ATTCTGTTAGAGAATATATTGATTTTTTATGCAATAGGATTCTGAAGCCC
CTCCAGTTCCTCGAGTATTGCCGAAAGACGAAGACCCAAGTATAGTTAAG
AGGAATAAGAGGATGCTTGGGCAACTTCTCGGCACTTTGGAGGTAACACT
TAAGTTTCAATGCAGTATTTAGAAATTATGCAATGGTGTTGCCAGTTTTG
TTTTTAAATCTGCAAGCTAGACAACTTATGATAGTAAGTTCAATCCAACA
GTTGAAATGTACTTAATCGAAAAATTGCTGTTATCTCCAATCCAAGATTC
AATATTAAAATTCTAATTGTCAGATTGAAGTAGTTCCTTTAGCCATTAGT
ATTTGAAATTCTCTCTGCTTTTGTTGTATATATCTGTATCACTTGAACAG
TAGGCTTTATCAGTACCAGGCATTACTATTTGTGTTAAATTTTTAGTTGC
ATGTTTACAGCGTTTCAGAAAAGAAGATGCAAAAATTTCTGGCACTGAGG
CATACATGCGAAGATCTGATTCTTTAAAAAGGGTGAGGAACTGTTATATT
TTGCTTCGTAAATTGTTCCATGTGCAACATTGTATTTTATGGATACGTGT
GTGACTAATATTGCACTGAATTTTACTGTTTCTGTGATGAAAAGACTGAC
ACAAAACACAGTTGTATGTGCTCAGGTGTCTGAAGTAGTTAACCATGTTT
TTGAGTTTGATAGTATTGATAGAATAGGGAGACAAAATCTTCATTGTCAA
CCTTCAACTATTCTTAGTAGAATACCACTTGAGAAAGTCATGGGGGTGGC
ATAACTCTATCTTGTCACTGAACTTACAAAAATGAGTTAAAGGTTATCTT
TCATAATTTTATATTTGTTATTATACCTTTGTTCTCTCATGCAGTCACGC
TACCTGAAATACACAATAAAATAATTTTTTTATTATGTCCCCACCGTTCC
TCGTTTCCATTTTTAACATATTATTACTGGCACAAGAATTTGTAAGATAA
GCATGTTCCCTTGTTATGCATCTATAGATAAAGATGTAGACACTTGTACT
GAATGTTGGGCACATGATGTTATAAATTTCAGTAGATGTATATGATATTT
GTTTCAGTTTTGGTTGATTTGACTGAATTTAGAACTTAAATATGGGGAAC
AATTTTAGAAGAGTGAGGCCACATCCTTTCATCCTTTATCGACCTAATCA
TATTATCATATTATCACTCAAAACATGATTATAAAGTTGAAAAAGATGAT
TGCCTAGAATCTTCGTTGTTCAGGATTGCAGTGTGTCCTTTGGACTATCA
TTAGACACTTGGATGAGTGACAATTTATTTTGTTTATTTTTCATCAGTTT
ATATATAACTGTTAAAAATGAGTCAAATCTCATGTAGGCTGAAGAAAAAG
CACGTGAAGAAAGTGAAATGTTGAGGCAGCAGGAGCGCGAGCAAATTGCA
GAAAAGCGGAGGAGAGATTTGGTTAGTTACTTATCTTGAATGTTCTAAAG
TTTTTCAACTTTGTCCTTATTCTCCACCCGCAATAAATCCAGTATTTGAG
TGAGTTATAGATTCTGATATTATTGCACGTTGTCTATTAGACTCTTAGAG
CACGAGTTGCAGCCAAGGCTGAAGAGAAGGAATTGGAGGTGTTATTTATT
CGGTGGAGTGAGCACCACAGCAAGCTTGGGAAGTTTTTAAGGTATTTAAT
TGAAATTATCAGTATGCCCAATGAAGTTTTGGTATCTTCCAGCTTTTCTG
CACTTTATGGCATTGTTTTGCCCATCTACTTATTGCTTATGCACTCATTT
CTTTTTTCATCTCAGGTTATTTTTAATTTTGGTCCAAAAGTATCCATTTC
ACAATTTTATTGAGCCAAAGATAAGTTTCGTCCATGTGCAGAGTGTGAAG
AAACTAAATGATTCAATATCTTGTGTTCCAATGTGTTTATCCTCTATTAC
TGACCAGTAGTTTTGTATATTGTGTTGGTTGACACCCTGTCGTCTTTATT
TGGTCTGTATGCTTTCAGGACCAAGGCAGAGCCTCCTATTCATTACTCGT
TTGCCAAACCATTGGATGAAGATGTAACTTCGGTGGAACAGCGGAAGGAA
AAGGTATCTTTGTGTTGCTTAAAGTTTTGTTGGTAGAGAATTTTAGCACC
ATCTTTGTGTTTGCTTAAAATTGGTAAGCACCATTAATCAGTTTTGATTG
TTAAATAATAAAACATGAGACCATAGATAGCTTATGCACTTCCACATAAA
TTCCTTATATAAAATTCAAACTCATAATGTCAATTGAGAGTAGATACGAT
GTAAACTTGTACAGGACTGAAAGTGGAAGACTCTATTTATCCTTTAAAAT
GAATTTAACAAGTATCATCTCCGAATTACTTATGTGTACCTAAGTATGTC
ATATGCAAGTAAAGACGATATAAATAGCATATGCGCAGTAATAGAATAGA
AGAGTGTGAGGATATTCACTCTCACTTTCAATGAGATCATAACACATAAA
TTCCATAAAAGAGATGCAATTAATATATGATGCTCTTTCAGATTAATTAC
ATGTTTCAAAGTATAAAGCAACAAGAAGTCAAATAAGATAAGATGTGAAA
GCAAAAAATAGAAGGTGCCAATAGTGGGAATGTAAGAGCATCTCCAATAG
CATCTTTATAGTGGCTCTTAAATTAAAATTGGAAGAGGATTGTAATTTTG
CTTGCTCCAATAGGCTCCTAGTGACTCTTAAATTCCCTAAATTCCTCTTC
TCTCTCCTCAATTTTAAGAGCTACTAGTCACTCTTGACCAATATTTAATA
ATAAATTTGTAAGCAAACATTTTCTCTCCATCTACTTTCTTTTGTACTTT
TATGCACATGACTTACTTTTAATAATATAACACAAAATAAGGAGTGAATA
TAAGAAGTGTTGTTGGAGTTGAACCCACATCAAGTCAATAAGAGTCAATA
TTTTATATTATATTTAGGAGTGAGATAAGAGACTATTGGAGATGCTCTAA
GGGTTTGATGATACTTGAGTGAGTTCTATATATGTTTTTGCACTTTTCAG
TTAATTGAAGCAGAGCTAGGATAGAACAACACAATAACAGAGAGATCTAG
GAGAGCAGAGGCAGAAATAGAGAGATAAGAACAGAAATGTAGAGAATAGA
CAAAGTTGAGATAGAAAATTGCAGGAGAAGATAGCAATGTAGAAAGAAAT
TTAGAGAACTAGAAAGAGGGAGTGGTAGAAAATTTTCCATATTCATATTT
CAATCCGTGAACTGGAAGTACAGAACTACAGATGTAAACAAGTATTTATA
GACCCTAACATTGTAACCAACTCCCAAGATGGTAAATGACTAAAGTTCTC
TTACTAATACTCATATAGACTCCAACATTACTGTAACTACTTCTGCATAC
TGTATCTGCTACTGCTGTTGCTCTTAACAGGGAACATGTTGTCTAGCTTG
TCTTATCGATTTCCATGACTATGTCTTTAATTTTAGCGCTTTGGGCCTTT
TTTGCTAAGTTTTGTTCCCTGTCTGTAGTGCATTTGTAGACAAACATTAA
TCAATGCAAAGCAGTTGCCACGACAACCTTCGAAGTATTGTTTCAGAATG
TGCATAAAGTTTGCACACCCTCAAATTAAAAACAGTTATATTTTCTCATA
ATCTGTTACAGTGCCAGAAATGGCATTGTAGTAACTTGTTCGTGTTTAGG
GGTCAACGATTATGCATCATATGATGTTTGCCTCTTTGTTGTTGTAGTTG
CATTTATTAAGACATATGGATGGCTTGCATTAGTGTTGATTCCTGATCTT
AAAAAAATCATGTTTTACAGGTCAACAGTTATGCATCATATGCCAATTTT
GGCCTCTGTGTTGCCTTCAAGGCAATGCCTTGCATCTGTTGAGACATGTG
TCTCAATAAAAAAGAATGTTGGCCAAAACCTGGACTCATTGCATTTGCAT
CCAATTTTATACTAGCAGCCAGTCTGGCAGAAACTTTACTATCACCCTGC
ACGTGGTAGTGTTCCAAAATTGATTATTAGATTGTCTGGTCGTATACGTC
TTGCACAACGTTTGTTGCCATTTTTATGTTTTACTAAATAATTTTCACGA
TGTTGCTTGCCGAAACTTTGGTTCAGGTTCCATTTTGCAATGATTGCCTT
CTTAGCATCAATGTGAAACATAAATATGCTTCATTGTATATAGCCCCTAT
ACAACTGGAGTGTTCAATTTTCTTTTCTTCCAATCCCTTTATCCAGATAT
TTCAAGAATGGAAGGCTGCTAGGAGGGAGGAGTTATCCCAATATCAGAAA
CAGCTTGCTGAGCGATCTGTTGCCAATGTTGAGAAGGAGCTGGAGAGGTG
GCAAAATGCAAGAAACACCCGGAAGGGAAACAATGATGCATTGAATTTGC
AAGAAACTATGGACCAAGAGTTGGAGACCCACAGGCTTGAGCATGGACCC
AAGAGAAGAAAAATTTCTGGGGGAAGCAACAATGAAGATGATGATGTCGA
AGATATCAACGCCGGAGAGGATGACATGATGGATGATGTGCTAGACGTTG
ATGAAAACAATGGGAGAGGCGAACAAGCTATTAAGGCCGACACTGATAAT
GGCAGTCCGGCTGCAGAAAAAAAGGAGGAAGTGGCTTAA
Sequence Length:
14939
Sequence Checksum:
b1b46d2a76fc93de3c8d21e22e728bc0
View location in JBrowse:
Cds:
>DCAR_029238cds ATGGAAAAAAGTGAGCCTTCGTTTGTCCCCGAGTGGTTAAAGAGCAGTGG AAGTGTAACGGTTGCGGTTAGTACAAATCACCGCCAAAATGATCATATGA CATTAAAGCCGACTAGAAATAAATTATCAGCAGATGTTAGTGCTCATGAC TCGGGACGTTCTCCTGTTTCTGATAGAACTACGTCATCTTACTTCCGTCG AACTTCATCTAGTAATGGTTCTGGTAACTCGAGGTCTTATGGAAGTTTTG GTAGGAACAACCGAGATAGGGGCTGGGATAGAGACAAAAATGAATATCGT GATCATGATAGGTTGAGGCTAGGTGATCGTAGGCATCAAAACTATTCTGG TTCATTAGGGAGCGATTTTTCGGATAGGTTCGAGAAGAATGGCTTAAGAC GAACTCAGTCTTCTGTAGCGGGGAAACATAGTGAGCCATTGTCCAGAAGA GTATCAGCTGACTTAAACAGTTCCAACAAAAGCAACTACAACAATAGCAG TTCTCGCCTTTTGGGGAGTAGTGGCATCAGCAGTGTGCGGAAAACTTCAT TTGACAGGGATTTTCCATCTCTTGGAGCTGATGAAAGGCAAACAGATCAT GGGATAAGAAATATTCCATCTCCTGGATTGAGTACGAACATGCAGAGCTT ATCAACTGGGTATTCTACAGTGGCTAATGAAGTTGGGTGGACATCGGCCC TAGCTGAGGTACCTGTGATGGTTGGAGCCAATGGCCCCATTACATCATCC GTTCTCCAAGCTGCTCTTCCAAGTTCAACTTCTGTGCCATCAAGCACTGC AGCCAGCCTCAATATGGCAGAAACTTTGGCACAAGGGCCCCTTCGTGTTG ACACTGCTCCTCAGGTATCAGTCGAAACTCAGAGGCTCGAAGAATTAGCT ATTAAACAGTCTAGACAACTCATTCCGATGACACCTTCCATGCCTAAATC TTTGGTGTTAAATTCTTCAGAGAAATCTAAAGTTAAGGTGTCCCAACAGC AACACCAGACCTCTTCTATTCACTCTTTGCGTGGGACACTTGAAAAGTCT GATGTGCCAAAGACATTGAGCTTGGGAAAACTTCAAGTCCTTAAACCTGC ACGAGAAAGGAACGGTGTTTCTTATCCAGAAATAGATAACTTGAGCCTTA CCAATGATAGTACAGTAGCAAATAACCCGCTGACTACTTTACCAGCTGTT GTACCACCTCCTTCGAGGACACAAATCAAGAACCCAAACCCTTTGAATGT TAATCGTAAGCCTGCAGCTATAATGGTCCCGGCAACATTGGAGAAAAAAC CTTCAGCTCAACTTCAGAGTCGAAATGAATTCTTTAATCTTGTGAGGAAG AAGTCCTTGACAAAGTCCTCTTCTGTTGCTGATTCTGTCTCTACTGTGTC ACAATTTGTTGTGGAACAGCCTAGTGAAACTCAAACTGCTTCTCCCCTTT CTCAAGGGAAAGATTCTCTATCTGCAAACCAGTCTAATATGGACCATTAT AAAGAGAACGTAAATGCCTTGATCAGCAACATAAATAATGGCAATGGGCA TCAGCAATCTTGTGGCAATGGAGAGACTCGTTCAAGATCTGACATGATTC TTTGTTCAGAAGAGGAAGAAGCTGCATTTTTGCGGTCACTTGGTTGGGAT GAAAATGCTGGAGAGGATGAAGGCCTTACAGAGGAAGAGATCAATGAATT CTACAGGGATGCAAGTAAGTATGGCGACGGCGGAGATTGGGAAATTATCG GGGGAGATCTGGTGGCCGCAACCGCAATCTGTGTCGGTGGAGATGTAGCC GGTATGATTACAGAGAGGCTTCGTGATCCTCGGGGAATTCGACGTGGTGG GTTATCAGGTTCAGGTCCTGGTAACCGCGGTTTCGTACCTGGTGGAAATC GACAGCGCAATTTTGCTAATAGGAATGAGGAGAATCAACCTGCGCCAAAA AGGCGTCTTTCTTCTGCCGTGGTGAAGATTGAAGATGGGGAGATTGTTGA TGACGATGATGTAAAGGACGTAGGAAACAAAGAATCTGCAGTGGAGGAAA AGGAAAGCATTGAAGTTGTCGAGCCGAGCCAGAATGAGAAAATGAATCCT ACTTGGCCTAGGAGGGTTGTTGATCAGAGGCCACGAATGATGGATTCTGA AGCCCCTCCAGTTCCTCGAGTATTGCCGAAAGACGAAGACCCAAGTATAG TTAAGAGGAATAAGAGGATGCTTGGGCAACTTCTCGGCACTTTGGAGCGT TTCAGAAAAGAAGATGCAAAAATTTCTGGCACTGAGGCATACATGCGAAG ATCTGATTCTTTAAAAAGGGCTGAAGAAAAAGCACGTGAAGAAAGTGAAA TGTTGAGGCAGCAGGAGCGCGAGCAAATTGCAGAAAAGCGGAGGAGAGAT TTGACTCTTAGAGCACGAGTTGCAGCCAAGGCTGAAGAGAAGGAATTGGA GGTGTTATTTATTCGGTGGAGTGAGCACCACAGCAAGCTTGGGAAGTTTT TAAGGACCAAGGCAGAGCCTCCTATTCATTACTCGTTTGCCAAACCATTG GATGAAGATGTAACTTCGGTGGAACAGCGGAAGGAAAAGATATTTCAAGA ATGGAAGGCTGCTAGGAGGGAGGAGTTATCCCAATATCAGAAACAGCTTG CTGAGCGATCTGTTGCCAATGTTGAGAAGGAGCTGGAGAGGTGGCAAAAT GCAAGAAACACCCGGAAGGGAAACAATGATGCATTGAATTTGCAAGAAAC TATGGACCAAGAGTTGGAGACCCACAGGCTTGAGCATGGACCCAAGAGAA GAAAAATTTCTGGGGGAAGCAACAATGAAGATGATGATGTCGAAGATATC AACGCCGGAGAGGATGACATGATGGATGATGTGCTAGACGTTGATGAAAA CAATGGGAGAGGCGAACAAGCTATTAAGGCCGACACTGATAATGGCAGTC CGGCTGCAGAAAAAAAGGAGGAAGTGGCTTAA
Pep:
>DCAR_029238pep MEKSEPSFVPEWLKSSGSVTVAVSTNHRQNDHMTLKPTRNKLSADVSAHD SGRSPVSDRTTSSYFRRTSSSNGSGNSRSYGSFGRNNRDRGWDRDKNEYR DHDRLRLGDRRHQNYSGSLGSDFSDRFEKNGLRRTQSSVAGKHSEPLSRR VSADLNSSNKSNYNNSSSRLLGSSGISSVRKTSFDRDFPSLGADERQTDH GIRNIPSPGLSTNMQSLSTGYSTVANEVGWTSALAEVPVMVGANGPITSS VLQAALPSSTSVPSSTAASLNMAETLAQGPLRVDTAPQVSVETQRLEELA IKQSRQLIPMTPSMPKSLVLNSSEKSKVKVSQQQHQTSSIHSLRGTLEKS DVPKTLSLGKLQVLKPARERNGVSYPEIDNLSLTNDSTVANNPLTTLPAV VPPPSRTQIKNPNPLNVNRKPAAIMVPATLEKKPSAQLQSRNEFFNLVRK KSLTKSSSVADSVSTVSQFVVEQPSETQTASPLSQGKDSLSANQSNMDHY KENVNALISNINNGNGHQQSCGNGETRSRSDMILCSEEEEAAFLRSLGWD ENAGEDEGLTEEEINEFYRDASKYGDGGDWEIIGGDLVAATAICVGGDVA GMITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNFANRNEENQPAPK RRLSSAVVKIEDGEIVDDDDVKDVGNKESAVEEKESIEVVEPSQNEKMNP TWPRRVVDQRPRMMDSEAPPVPRVLPKDEDPSIVKRNKRMLGQLLGTLER FRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRD LTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPL DEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQN ARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNEDDDVEDI NAGEDDMMDDVLDVDENNGRGEQAIKADTDNGSPAAEKKEEVA*