DCAR_029350 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_029350

Identifier:

DCAR_029350.gene

Locus Tag:

DCAR_029350

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.

Cross Reference:


PRGdb	putative/2173594

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_029350, is a part of gene, DCAR_029350.
The genetic_marker, MK006276 K3720, is located in gene, DCAR_029350.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_029350	DCAR_029350.mRNA	mRNA	DCARv2_Chr9:5263591..5276494

Sequence:

ATGGGAATATGCATGGGAAAATCTGCAAAATGTGCTCATGCTTCTTCTAA
TCAGTTCATGGGTATTTCTCTTCTTGATTTTTTGTTATTTCTTACATGAA
CAATATGATATGATACATTAGAACCAGGTAGATGTTAAAGGTTATTCTTA
GTAAGATATTGTGATGTATGTTTTGCTAATTAGTTGTTTATCCTTTTCTT
TGATTATTAAAAAATTGTGATGATAAGTGAAAGCATTATAAACATGCTGT
CTGCATGTGGGATTCTTAATTGAGCTTCACTTGAGGCCTTGAACTTGAGT
AGTCTGCAGAAAATGGATATCAGTAGAACTCTGTTTAAAAAGGCTGAGTG
TTATTGATATCATTAGATTTATCTTTCGACGAACATATCTTCATCTATGT
TCTTATGTTGATGACCAGTAGTTCACAAAATTGACTTAACTACAGGGAAG
AGGATTTTTTTTTTTTTTTTTTACTTCTAATTATGCTCTCCAGATTGTTT
AGTAGCTATCTTTAGAGAATTCTGTCACTTAATTAGCTGCGCGAAGTTAT
TGGGTGAGGAGAACTTGAGTTGGCTGTTGCAGAGCAACTCTTACTAGTGA
TAGAGTGGATAAATTTATCTGAATTAACTTCATATACGAAATTTAAAGAG
ACTAAAAAAGAACATACCATTATTTGAACGAATTCCTGCATATATATGTT
AAAGGATTCTTTTTTATCCTTTCTGCATTCTGCGTTTATTGGAATTTCAG
TGGATTGAATTTTCCCTCATGAATTCCATTATTTTTTGTAGAAACTACAA
GTTCATCTAGCGATAAACAACAAGAATCATTCTCTACCAACAAGAAATCA
GTTTCATTAAGTTTCAATAAAACAGTTGTGGCACCAGAAGGGGAAATTTC
TGTCTCCAACAGTCTCAGAGCCTTCAGTTACCATGATCTTAAGAACGCTA
CAAAAAACTTCCGCTCTGACAGTCTTCTTGGTGAGGGAGGGTTTGGTTGG
GTTTATAAAGCATGGTTAGATGAAAACAGTTTTGCTGCAAGCAAATCTGG
ATCTGGAATTTCAGTTGCCATTAAAAAGCTCAAAACAGGAAGCTGTCAAG
GTCACAGAGAATGGCTTGTATGTTTACTCGATACCTTTAGACTATCTTTT
ATGTATTTTTTCGGTATATGCCCAACTTATCTTTACTTCCAATTTTCTTG
TGCTGCAGACTGAAGTTAACTATTTAGGGCAGCTACACCACGAAAACCTT
GTGAAACTCATTGGGTATTGTGTTGAATCTGACAACCGCTTGTTAGTTTA
CGAATTCATGTCCAAGGGAAGTTTGGAGAACCACTTATTTAGAAGTAAGT
TCTTTTATTTGCAGATTTTTCACTACTATATCTTACTCCTTGCATAAGTA
TGTTAATAAAGGTACTTTGCATTATAATGATTGGCATAGCATTCTTCCTT
CCCAAAAACGTGTAGTGTTTCTGAGTATTTTCAATATTTCATCAATGTGC
ACAGTGCACACTGGAATTTAAGTTCCCTTTGTGAATGTTAAGATATAATT
GAGATGTGAGCTTGAAAGTTTGTGTTGGAACAGAATTGAGTATTGTTAGC
CTGATACGTTGCAGGCTTCGATTCATTATTTTCATATTTCTTCAGTGCCC
TGCCCCATACTCGCTATTTTGTATCTTCATTAAGCATCTTAAAATGTGCT
TGTTTACAGACACTTCATATTCTAAATCTCTTAATGGTCTTGTGTTTATA
TTCCTATTTCATAATGATCTCCGATTACAAAAACAAATAAGGTTTCAAAC
TACAAATCCTTCATCGGTAGATGCTATATGTGACTGGTTGCAAAAATATG
CAGTCATCCAGTAATTTTGAGTCCTGACCCATCTATTTTTTTATTTAGGA
GGAGTTCAACCTATTCCATGGTCTACAAGGATTCATATCGCAACTGATGT
TGCACGAGGCATATCCTTCTTACACAACTTGGACTCCAACGTAATTTACA
GGGACTTGAAGGCATCAAACATTCTACTTGATTCGGTATGCTGACAAATT
TAAAGTTCTTCTAATATACAAAATTCAAGATTCCATTCCCCTGAGTAATA
GTTGATTGATTATATTATCTCATAGAACGTTTTCTCTTAATTTCTTCAGG
ACTTCAATGCAAAGCTTTCGGATTTCGGCTATGCAAGGGCAGGTCCTACT
GGAGATAGAACTCATGTGTCAACAAGAGTTGTTGGTACCAAGGGTTATGC
AGCACCAGAATATGTTGCTACAGGTCAATACATCTATCTTGTTTATTCTT
CGTCACCCCATTAAGTATATGACTGTGTAGGAGAAATTGCAACAACTTCA
ATTTCCTAAATTGGTTATTGTATTAGGTAAATAGGAATTGTCGCGTACTT
CCAGAACTCTTAACAGAAGACATTAGCTCTAAAAATAATAAACAGACAAT
CAACAAATAAAAGGAAAAGCAGAGCAAGAAGTTAATACCATATTGATTTT
TAATTTCTAGAGAAGTTTTGTGAAATCAAGTATGGCAGATAATATATAGA
AGTTCCACTGTTTTCGTAAAAAAAAAAAAATAATTAAAATTTCAACTGTG
ATTCTTCGCATCCATAATTAACTTGGTTTTTGGTATCTTCCTCCTACATT
GACAAACAAGCAGGTCGGCTGACTATAAAGAGTGACGTATATAGTTTCGG
TGTAGTCTTGCTAGAGTTGCTTTCTGGAAGGCGAGCATTAGGTGATGAGA
GGGCTGGAGGAGTAGATGAAGAGACTTTGGTTGATTGGGCAAAGCCGCTA
CTTGCAGACAAGCGAGTTTTGAGAATCATGGACACACGAATGGGGGGTCA
GTACCCTAAGAAGGAAGCACAAGCTGTGGCATCCCTTGCATTACAATGTC
TCGATTTTGATCCCAAATTAAGGCCATCAATGTTAGAAGTTGTAGCTAAA
CTGGAACAAATTCCTTTGGCAAAAAATGTTTCAAGAACTCTCCAGGTTAA
GCAGGAACACAGTGGCAGAACTAGAACCACAAGAACAAGATAGGCTCTAG
ATTTACTAGAACTTTGTGGCTGTATAAATATTTTTCAGCAGATTAAAACA
GCAGTCATACCCTGGCAGCTCTTGAATGACTCGGGGTCCCTATAGCTTTG
CGTGAGGGGTATTGACTATCCAATTTTCAGAACTTGTTGACCATATAGCT
TGTATGAGAGGGGATTATAGAATTAAACATGCGATGGATATTGAATGGCC
GTATATATGTGATGGCTAGAGATCTCCTAGATTTTATCATGCAACAGATA
TAAAGTTCTTCATGTGTATATAAATAGCAAAATAAATTTCAGATGCTCAA
ACATCTACATCTAATATAAATCTGCCAGATATTATATCATAGCAGAATTT
TTTTTATATATGCTTTAGTCCACAAACTTGTGAAATTTGTTTACAATATT
TGATCTTTGGAACAGTATGAAGTGCTGTCATAATGCAGTCCCTGCCTGTG
GAATCTCTCCATTGCCATGAATTTAACTGCGGCATCTTTGGTTAGGACTA
CAACCTCGATTGTATGGGTTTGCCTCCCCTGGACCAGCTTTAGGAGGATC
GTGTTTTTTGTGCCCTTTCTCCAGTGGACTGTAGTCTATCGTCTTTGTGG
CTTCTGAGGTACTCATCATTGAACAAACCAGAAGTGCTGCTAGAGCGAAT
ACAAGGAGTTTTCGTGCTGCAGCCATTGGAAGAGATCGATTCTTGTGTTC
GGAACTTAATTCGTTTTATAGCCAGAGGTGGTGCTATTTTTGGCACAGAC
AGTTCTGTTTCTGGCGCTTTTTCTTTGGTTTATTTCGATTCACACATTTT
AAACAGATCATTTAGGTAATGGCTTATATTGTTTGGATATAGGCCTTTGA
TACCATGCCTGATTTAGATGATAGACTAAAATGTTTGTTTTGAAAACAGT
TAGACTAAATTAGCAAAGTATTTGTGGAATTCTGGTATTATAGTTTACCA
CATAAGAACATAAGGGCCATGTTTGGCTTATTGGCTGTCACCACTTCTAG
AATTTTCGATGAAGCCGATTTCTATTTTTCTTGATCCGTTTTCATGTTTG
GCTTATTGGCTGTCACCACTTCTAGAATTTTCGATGAAGCCGATTTCTAT
TTTTCTTGATCCGTTTTCATGTTTGGCTTATTGGCTGTCACCACTTCTAG
AATTTTCGATGAAGCCGATTTCTATTTTTCTTGATCCGTTTGTGTAAAAA
GACAGAAGTTTTGTAAAATGCTAGCTTTTATTTTAGAATCTTACTTCTTT
CCCAAATAGTTTTATCGTTTATAAGTCTTAATTAGTTTACTTCTCACTTT
TAGACCACGTCTTTACTTTAAGTAGAAACTACTTTTTTTAAGTTTATCCA
AACGACCCCAAATTCTGTCCGTTGTTTGGTAATTACATTCGCCTTATCTG
CATGCATGTCCTTATTTGGCTATAAGTTTAGCCCGTACACGGGCATTAAC
TAGTGTCGAAAATGAGTCGACTTTAAATAGCCTAAACCATATATGATTTT
ATTGTTACTTTTTTATTGAGAAGCCGATAAAAAAATTGCTTGTTAAATGT
AATTTTTTTTGTCTTGTTAAATGTAAAATCCGTTTTTCGAGATAGTAGTT
TTCAAAGTAAAGTTGTGTTTTTAGAGAAAGCACGTCATCTTAATTACATT
ACTAAAAAAAAGCTGCTTTTCAAATTAACAAAACACATTCTGCACAATTT
TTTATGCAAACATCTTTGTAATTTATAAATCTTCCTTAAAATTTATTTTT
ACTAGAAAGTATTTATATCCTCAAATTAATAAAACACATTCTTCGCAATT
GTTTTTTATTTTGTGACACCATTTGATTTTTTCATGTTGCTCTCGATAAC
AATGAACTTCTTTATTACTTCAATATCTTTGATAAGGACTACAACCTAAA
TTATCTCTCTCAGATAAAGTGGGGAAGATCTTTCATCTTTGATCTTTCAT
CTTTGGTCGGGGCTTTCCTAGTATAATGTGATTTATTGTTTAGGAAAATG
CTAGAGACTCCAAAAAATTGTCCCAAAAAATTGTCCCAAATGATGTGTCT
AAATCTGATTGGCTGAATTCACTCTCATAATAATGAGACCCCCCCTGCAG
ATTCATTAATCACCCAATCATAACTAGCCACTTGTTTGCTACATCATTTG
GTAAAGATTTTTGGGAATTTTTTTTGGGGTCTCTAGCATTTCTCTATTGT
TTATGCCTATGTGATCCCGTTCATCATCATCGAACAAATGATAAGTGTTG
CTAAAACAAGTATGACGAATTTCATGTTGAAATCATTAAGAGAGATTTAT
TTTTAATCTTTTTAAACTTGATAGATTTCATATCAAGAGTTGATACTAGT
TTTTATACAAGTCTGATTTTGACAAGTACTCATGGATTTTTAGTTTGTGG
GCGGGATGATTAATGTTTTTGACACATAACAATGTTTTTGACATATAATC
TTTTACTTTCGTGCCTAAAATAAAGATCAAAATAAAGACAAAATTGAAAG
CAAGTTCCGAATTAAGTAAAAAAAGATGCAAAGTATAATCATGGATCCAA
TTTTTCCTATTATGAAAGAAAATGAAAAAAACAACAATCATATCAACAAT
CAGTATACTTATATAAGGGAGAAGCGAGGATTGAAATCTAATCGAAACAC
GGTCAGAAATAAAAACACGAGTTCTCGTTTACTTCTGTGAATTGAACTAA
ACCCCCGTTTTTGTTTCTGCGACCGAAAAGCCTTCAGCAATGGCCAAAGT
TCCACCCAAGCACGCCCGTGATCAAAACCAGGTTAACCCCCATCTCTCTC
CCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGCT
AATCCCCCCTCTCTGTATATATGTGTGTACATACTTCACTAAACACCAAT
TAATTAAGCTACTAGGTTAGCTGTAGTGAAGTCTAGTCAATAGAAACACT
AACATATTTCTTCTCACATGGATTACTTGGGTTTCTAGTTTGGCCCATGT
CAAAATTCTTGCAAAAGATTTCTTATAATTGGATTTTTATATATTTAAAT
AACAGGATTTCCAGGGGTTCTTAAATAATTTGCAGGATTGGGAATCGTCA
CTCAAAGACAAGGAGAAGAAATTGAAGTCCCAATCTTTAAGCAAGGAAAA
AACGGTAATCCGATGAGTATAAAGCTTTGTATTTGGTTTCGATTTCTATC
AGTGCTTGTCTGCTCAAATTGTTTAGCTATTTTATGAAACTAAATTTTAT
CTAGTTATCTGCAATACTATTATATGAGCTTTTGCCGTACATCTGGTAGA
TAATAGTGAGTTTTGAACTATTTTGGGACCTAATGATAGGCGAATTTAAT
CTGTAGAACAGGCGAATAAAAAGTTTCGGGCAAGGAAATTACATTTGCTT
TTTCAATTTATATTTTTTTCCTGAGATGGGAAAATGCTAACAGGGTCTTG
GTGGTAATTATTGCTCTAGTATCTCATGATTCCAGATTTTGCATATTTAG
TTGTAATACTTTCATTTTCTTCCGCAGAAGATTGGAATAGTTGGCGAAGA
TAGAAAACAAAGGGGAAAACCAGCATCAAATAACAGTTCGACTGCTCAGT
TTGATTACTTGAGAAGTTTTAATGCAATGGACAACTTATCAAGTGCTGTG
ATGACAGAAGGGAGTGCTGTCGATGCTAATTCAGAAAAAGAGTTGGTATT
GTGAATACTTAACGAAAAGTATTATGCCAATTCATTTAGTAAGAGCAAAA
ACATAATTTTGTATATATATATTTCAATGTGCTGCTCAGGGTAATGAGAA
TTTCAAGCAGAAGAAATATCAAGAGGCAATCGACTGCTATTCTAGGAGCA
TTGCATTCTTGCCTACTGCAGTAGCTTATGCAAACAGAGCAATGGCTTAT
CTAAAACTCAGGAGGCAAGTTTCTTATAATTTTTTTGCTTCTATGCCTTT
TTTGTTCGTTGTTGACTGTTCATGTGTTTTTATATTATTTTTGTAACAAA
AGATATGACATTCCTTTGCTGAAGTGTCAAAAAGAGGAAGAAGATTATTC
TGACTAAGTTTCAGTGGAAATGGATTTATGAGCATACTTGATGCATTGAT
AGAAAACCAAATTAGCTTTTTGATCAATTCAACATGTTCCAACTTTTGTA
CTCTCAGTCATTGAGTTAATGTAAATATAAAAGCATCTGGGTTTTGTTAT
GGAGTTAAGATGAAGTCAATAGGTCCCACTATTTTGTTGTATCTTCTGGC
ATCTATCTCCTTGTGTGTTGATGTGACTAAAATTCATACTTGAGAGCTTG
GAATAACTGATTATTTATAATTATTAATTTGCAAAGACTATGTAAACTTT
ATTGTTATGGAAGTTTACTGTTTTCGTATACTCGGCCTAATGCTTTGAAC
ACCAATTATAATTTTCTCCGAATAACAAGTTGTCTATATTCATTAGATTC
CAGGAGGCTGAAGATGACTGTACCGAAGCTTTAAATTTAGATGATAGATA
TATTAAAGCTTACTCACGCAGATCAACCGCCAGAAAAGAACTTCATAAAC
TTAAGGAATCAGTTGAAGGTAGGTTGACTTTGGTTATGTGAATTCATATC
TAGCTTTCTAGGCAATTGTTAAGTGTTTTTTATATGCAGATGCTGAGTTT
GCCTTAAGGTTGGAGCCTCACAATCAAGAGATCAAAAGGCAGCATACTGA
ATCTAAGGCTTTGTATGAGAAGGTATCATCGGTACCAGATTTAGGCTTTA
TTTTAGATAGAATAAGTTTTACAGAAAAGAGAACACTTTCTGCTAAATAG
CACTGATATTGGTAAAATCTTGAGTTTCTTAAAGTAATCATTTTGAATAG
TATTATTTTGCTAGAACTTCATAATATATTAAGCTAGGATTATGAGAGGA
ACTAAGTTTCAATGAGAAACAGAGATATGAGATAGAGATTCGAGAGACAG
AGCATAGAGAAATCTGAGATTAGATTGATTGTAGAAGAAGAGAGCTTGAG
AGAGAGTTTGTTATAGAAAGAGACGGAGAATATTGGTAGCATGTATTCCA
ATTTATGTTAAACCAACCTGATGAAATTATACACAGTCCTTTGCTACTTA
TAGACTCCACTCTGATATATAAATTGACTCAAACACCAATAATTAATTGT
AGTACACTAGTACTCAGACTTGCTGACTGTTGTCTTCCTGGCAGAGTACT
TGTATTAGTTGCTGTACTTGCCTCTGCTGCGTATTTATATTCAGTAGGAG
CCGGGGTTGTGTTAATTGTCAATGCAGAAGTAATTTTGGAATGGTAAAAT
CATGAAAAAAAAGAGATACTATGAAAATGAAGCCTATGTCATTTAGCAGA
GGGTGGAACTGTGACTTAACCTAGTATTATAGAGATACTGATTTTGGAAG
AGAAAAGCCGGCGTCTTATCAATTACAGAAAGTATATTGAAAATAATTGT
TAGTATGATAAATGATAATTATAGAAGAAATGATGAGGTTGACTTCAGTT
ATGTCTTAATTTTGACAATATTTCCAGGAGATCCTTAAAAAAGCAGCTGC
GTCATTGAAAAGCGCAGAGAAGGGAGTCCAAAGGGTAGCGAAGCCTGTGA
TAGAAATGAGTTCTCAGAACAATGGCGTCCAAACTGTTTCAAGTGGTTCT
GAAAACATGGGTGTGGCTGCAATGAATGTAGATAGTAAAAAGGTATAACA
ATTGATTATGCCATATCAACATGGTATCATGTGGTTTTTATGTTAACTGG
TGAAGAAAATGTAGCCCTGAAAAATATATTATTCACTAATGATTTTGCCA
AAAGCTTTCTGTTAGAATTATGAATTTTGAAGTTGCCTCTAAGAACTTGA
TGTTATTTGTTGAAATACTTCTAACAAAATTCTGAGACAAGAGGTTATCA
TTTAACTTTTTTAGGTGCATTAAGTTGTTGAATCATGTAAAGGGAAGGGC
GATACTAAAAGGAGTAAATTATTTCAATTGATGAGAACTTTTGATTTCTA
TAGATTGTGGCCATAGGCATAGAGTCAGATAGTGCAATATGATTTTTAAA
ACCTTGATAGCTGGTGCACACAATTCAATATCAGGAAATGTTAGGATATA
CAAATTGTAGCTTGTGCTAGGGTCTAGCTGCTTTAGCCCTTCTTGTTTAA
CTGGCATGTTCTCTTTGGTGGCTTACTCCATGGTTAAGGCAAAATTTTGG
GTGAAATCATGAAGTTTTGCATCCTTTTGGGGGTGCACCTATCTTTGTTT
ATCTTGTTATTTTGATTTTTTTTAAAGTTTCTTTTTTGTCTTGTTGACTG
AACCAGTGACATCAGAAGTCGCTCAATTTGTCATTACCCATTTTCAAATA
CGAGATATAAGCATTTCTAAACACAACTCAGTGCCTGAAATTCCATTGTG
CACTTCAGGGTGCAACTCATACACACTTATGCCAGTCTTTTTAGATGACC
TTCAGGCACACGGCAGATTCAGTGCACACATGATGATTTTGAATCTTAGT
GCAGCATGTGAGCTCATGGATGTGATAGTGACACCCAGACCTGTTCATGT
ATCTCATAAATCGTACAAAAGTCATCTCTTGTCTGGAGTGTCGAACTTTC
CATAAAATAAAATCTGTGAAAACTTCTGCTTATTCAGTTTTATCTGTTTT
CACTTCTCAGCATAGTTCTGAATTAATCATGTGATTATCATATTATAATT
GTTCATTTTAGGAAAACAGGACAAGCCATGGACCATTAGTTTTTCATTTT
AACTATGTTCTAAGACCCAAATGGAGCTGATATTTTAGGAAAATAGGACA
AGCCATGGTTCATTTCATGCTATCTACAATGCTTCATTGTGCGCAAAATA
TCTAAGAGACATCAAATCCAAAACACTTATAGAAGATTTTCGTGAAGTTT
GGAAAGTAATTGTGCAGAATATTAGAGGATGATATCTTAGTGATCTGTTT
TAAACACTATAGCTACTGATGAGAATGTACCAACTATACACTTAACTAAA
CACTCTCTTATGCACAAAGCACCTTGCTCTTGTAGTCATCAACGAAGCAA
CTGACACTAAAACAAATGTTGCTAAAATTATGTAACAGTTCCTGATCATA
ATCATTCATTTGGTTCTGTATGAACTATGCTAGTTTTGTATAAGTTAGTA
CATTTTTTATAAAAGAATTACCTTTAATACCTTGACTTGTATTAATTCAG
CGGAGTTAAATTTTTAATCTATAAATGCTTTGTCCATACACATTTCTTTC
TCTTCTTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
CCCTAACACTTTTGGGATTTATGTTTAACAGAGAAATCACAAAACTGGCC
AGGAAGAGCTGAAGGCTTCAGTTCAAGAGCTTGCTGCTCGTGCTGCTGCA
CTTGCAACAGCTGAAGCTGCCAAAAACATAACCCCTCCAACTTCTGCTTA
TCAGTTTGAGGTTTCCTGGCGAGGATTCTCTGGTGATCGTAGTTTACAGG
CACGATTATTGAAGGTATATATAATTTTTTCCCTCTCTTACTTCCATAAC
ACTAACAGATGCAACTGGACAGGCACTGTCAATAGCTTTACCTTTTTTAG
TGCCAGTCATTAATTTTTTCTTTTTGCTAAATGACCTGTCATTAATTTTA
CAAACTCTATTCTACAAAATGTGTGTAACTTTACCTTTTTTGACACATTG
CTCTGAGGATTTCCTTCCTTTATATTTAAGTTGTTTAGAGTTTAAAAAAC
TGGTTACATTTCATGTAGCTATCATGTTCACTTATTTACAAATCAAACTT
GATTTTGGCTCCATCCCTTTCTTCATGCTTCTCTTGAATAGCTAAGACCG
CTCATATCCAAACTCATCTGTAACTTAAAATCTGGTTCTTGTGGTTTTAT
AGTAACTAGTACCCTTCACCTCTTGGTATTGCAGTCTATTAACCTTTATA
TATATATAAGATCTTAATGGAAGTATATATTTTTATCAATACATATTCCA
AGTCATATGTCTAATGTGGGATCGACCAGAGAGAAATTATTTCTTTCCTT
ATTTTTGGTATTTTTTGTACTAGTTGGTTCATTGTATATACGTAATGGTT
ATTTTCTGTCAATTAGGTAACCTCTCCAGTCGCGTTACCTCGGATATTTA
AGAATTCATTATCAGCTCCAATATTGATTGACATAGTCAGGTGCATTGCC
ACAATATTTAAGTAAGCAAACCTCTACCAAGGACATTTTGCAAATTTCTT
CTTTCATATTCAATTTATTATTGTTAGATACTATCATATTACTTTCCATT
TTTTGTGGCAGTGAAGAACCTGCTATGTCAGTCAAATATCTAGAAAGTCT
AACCAAGGTCTCAAGGTTTGACATTATCATCATGTGCCTTCCTTCAACAG
ATAAAGCGGGTATGCATATAAACATTGATCTTTTTAAGCTTCTTTTCTTA
AAATAATGGATGGTATTTATCCAAAACCCAAGTACAGTTGCGGCACATTT
TGCATGGCTAAGGTTTATACACCCGTAGAAGTGTAGAAGTGAAAACTCAC
ATAAATTTTTAAGTTGAATTACATGTAATGTCCTATTTTTGAGTGACCAA
TGTACTTTCCTAATTAAATGGCATTTCATATACTGCGAAAAATGTGACTT
GTTACCTGTAATAAGTACACTGTGGCGGTACTCATAAATTTGTGATGTTC
TGGATTCTCACTGCTAGTTGGTTAAGGAGATGAAATCTCTTTCTGTTAAT
TTATGTACAATCGTCTAATTTTCATATTTCATCTTCTATGGGTAAAAAAA
GGTAAGAACCTAACTATGGAATCCAACAGTGATACCATAACATCGTCTAA
GAGGATAACATCTTTGATTTCTAATGTCGCATGGGTTTCTCACACAGAAA
GATTAATCATTTACTTTGGTTTTAGTGTGAGATTGTCCTATATGATACCA
AATTTTTTGCTTAAGGTCATTTTGCTTAGTCAACTTCCATTTATGCGTGA
TATTCATAAAATTAAAATTGACTTCCATCTATTTATTCTCGTAGAATTCC
ATTATAGAATCTCTATTTGAGAAAATGATTTTGTGAAGAAAAAGTGACCA
ACTTTTCTGTCTCTTCTGTAAATTCACTCTTCACATATATATTTGTATTT
CCACCACATTTCACTTTTCTGAGTGACATATATATGGCTTCTATAACAGA
TCTCGTGAAGATGTGGGACCACGTATTTTTAAAGGATGGGACTTCAGCAG
AGTATGCAGGGGTGCTAAGAAATCTTCGACCTAAATACTGCCCCTATCAG
TGA

Sequence Length:

12903

Sequence Checksum:

9adb026880348cbc73e9a0b9554807d2

View location in JBrowse:

DCARv2_Chr9:5263592..5276494+

Cds:

>DCAR_029350cds ATGGGAATATGCATGGGAAAATCTGCAAAATGTGCTCATGCTTCTTCTAA TCAGTTCATGGAAACTACAAGTTCATCTAGCGATAAACAACAAGAATCAT TCTCTACCAACAAGAAATCAGTTTCATTAAGTTTCAATAAAACAGTTGTG GCACCAGAAGGGGAAATTTCTGTCTCCAACAGTCTCAGAGCCTTCAGTTA CCATGATCTTAAGAACGCTACAAAAAACTTCCGCTCTGACAGTCTTCTTG GTGAGGGAGGGTTTGGTTGGGTTTATAAAGCATGGTTAGATGAAAACAGT TTTGCTGCAAGCAAATCTGGATCTGGAATTTCAGTTGCCATTAAAAAGCT CAAAACAGGAAGCTGTCAAGGTCACAGAGAATGGCTTACTGAAGTTAACT ATTTAGGGCAGCTACACCACGAAAACCTTGTGAAACTCATTGGGTATTGT GTTGAATCTGACAACCGCTTGTTAGTTTACGAATTCATGTCCAAGGGAAG TTTGGAGAACCACTTATTTAGAAGAGGAGTTCAACCTATTCCATGGTCTA CAAGGATTCATATCGCAACTGATGTTGCACGAGGCATATCCTTCTTACAC AACTTGGACTCCAACGTAATTTACAGGGACTTGAAGGCATCAAACATTCT ACTTGATTCGGATTTCCAGGGGTTCTTAAATAATTTGCAGGATTGGGAAT CGTCACTCAAAGACAAGGAGAAGAAATTGAAGTCCCAATCTTTAAGCAAG GAAAAAACGAAGATTGGAATAGTTGGCGAAGATAGAAAACAAAGGGGAAA ACCAGCATCAAATAACAGTTCGACTGCTCAGTTTGATTACTTGAGAAGTT TTAATGCAATGGACAACTTATCAAGTGCTGTGATGACAGAAGGGAGTGCT GTCGATGCTAATTCAGAAAAAGAGTTGGGTAATGAGAATTTCAAGCAGAA GAAATATCAAGAGGCAATCGACTGCTATTCTAGGAGCATTGCATTCTTGC CTACTGCAGTAGCTTATGCAAACAGAGCAATGGCTTATCTAAAACTCAGG AGGCAAGAGGCTGAAGATGACTGTACCGAAGCTTTAAATTTAGATGATAG ATATATTAAAGCTTACTCACGCAGATCAACCGCCAGAAAAGAACTTCATA AACTTAAGGAATCAGTTGAAGATGCTGAGTTTGCCTTAAGGTTGGAGCCT CACAATCAAGAGATCAAAAGGCAGCATACTGAATCTAAGGCTTTGTATGA GAAGGAGATCCTTAAAAAAGCAGCTGCGTCATTGAAAAGCGCAGAGAAGG GAGTCCAAAGGGTAGCGAAGCCTGTGATAGAAATGAGTTCTCAGAACAAT GGCGTCCAAACTGTTTCAAGTGGTTCTGAAAACATGGGTGTGGCTGCAAT GAATGTAGATAGGTGCAACTCATACACACTTATGCCAGTCTTTTTAGATG ACCTTCAGGCACACGGCAGATTCAGTGCACACATGATGATTTTGAATCTT AGTGCAGCATGTGAGCTCATGGATGTGATAGTGACACCCAGACCTGTTCA TAGAAATCACAAAACTGGCCAGGAAGAGCTGAAGGCTTCAGTTCAAGAGC TTGCTGCTCGTGCTGCTGCACTTGCAACAGCTGAAGCTGCCAAAAACATA ACCCCTCCAACTTCTGCTTATCAGTTTGAGGTTTCCTGGCGAGGATTCTC TGGTGATCGTAGTTTACAGGCACGATTATTGAAGGTAACCTCTCCAGTCG CGTTACCTCGGATATTTAAGAATTCATTATCAGCTCCAATATTGATTGAC ATAGTCAGGTGCATTGCCACAATATTTAATGAAGAACCTGCTATGTCAGT CAAATATCTAGAAAGTCTAACCAAGGTCTCAAGGTTTGACATTATCATCA TGTGCCTTCCTTCAACAGATAAAGCGGATCTCGTGAAGATGTGGGACCAC GTATTTTTAAAGGATGGGACTTCAGCAGAGTATGCAGGGGTGCTAAGAAA TCTTCGACCTAAATACTGCCCCTATCAGTGA

Pep:

>DCAR_029350pep MGICMGKSAKCAHASSNQFMETTSSSSDKQQESFSTNKKSVSLSFNKTVV APEGEISVSNSLRAFSYHDLKNATKNFRSDSLLGEGGFGWVYKAWLDENS FAASKSGSGISVAIKKLKTGSCQGHREWLTEVNYLGQLHHENLVKLIGYC VESDNRLLVYEFMSKGSLENHLFRRGVQPIPWSTRIHIATDVARGISFLH NLDSNVIYRDLKASNILLDSDFQGFLNNLQDWESSLKDKEKKLKSQSLSK EKTKIGIVGEDRKQRGKPASNNSSTAQFDYLRSFNAMDNLSSAVMTEGSA VDANSEKELGNENFKQKKYQEAIDCYSRSIAFLPTAVAYANRAMAYLKLR RQEAEDDCTEALNLDDRYIKAYSRRSTARKELHKLKESVEDAEFALRLEP HNQEIKRQHTESKALYEKEILKKAAASLKSAEKGVQRVAKPVIEMSSQNN GVQTVSSGSENMGVAAMNVDRCNSYTLMPVFLDDLQAHGRFSAHMMILNL SAACELMDVIVTPRPVHRNHKTGQEELKASVQELAARAAALATAEAAKNI TPPTSAYQFEVSWRGFSGDRSLQARLLKVTSPVALPRIFKNSLSAPILID IVRCIATIFNEEPAMSVKYLESLTKVSRFDIIIMCLPSTDKADLVKMWDH VFLKDGTSAEYAGVLRNLRPKYCPYQ*