DCAR_029678 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_029678

Identifier:

DCAR_029678.gene

Locus Tag:

DCAR_029678

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_029678, is a part of gene, DCAR_029678.
The genetic_marker, MK006422 K3866, is located in gene, DCAR_029678.
The genetic_marker, MK006423 K3867, is located in gene, DCAR_029678.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_029678	DCAR_029678.mRNA	mRNA	DCARv2_Chr9:10623942..10632592

Sequence:

GCAACATAACAACTCCGAGCTTCATACGCACGCTACACCTGTACGCAGTG
AAGATACCCACAGCCACACTCCGCAATAAAACACAACACAAACACTCTTC
TGTTACAACCAATTTATAGAACGATGAAAGTTTCCGACGAAATCACCGGC
GATTGCGTCGGAAATCGCAAAACCTTCAGTTTCTCGTCGAATTGGACGAT
CGCGAGTGGCTCGTTTGACGATTCCGTGAATTTCGAGTCGTCCGAGTCGC
CGATCGACGCGGATGGCGTCGATTCAGCGGATAAAGCGCCTCTTGTTCTC
AAACCTTCAGAATCGGATTCTTCGCCTTGCGAAATCACTCGTGAGTTTGT
GAATCTACTGTTTATTTGTTCAATTCACTATTCATAAGTGTGAATTTGAT
GTTTTAGGTTTAGGTTTTGGTTTATCAATTCGTATTATTTTTCGATCATA
TGTTGTGAATTTTATTTTCACCGAATTTGTTAAGATTTTGGTGGAGTTTT
GAAATGTATTAGTTTGATCAGTTTTTAAATGTATCATTTTGATCGAGTAT
TTTGGTATGGAGATTGGCTGTTATTAACCGGATCAAGGTAGCTACTTTTA
TGAATCAGTGTCTTTAAGAAGAGGATTATAGGTAAATGAAACTAATGTAG
GGCAGGAATTAAAATCGAGGAATTATGGAAGGATGGTAAGGAAAACCGTA
ACAGTAAGTACGCATTAATTGCGGATATGACTACTTTGTTGGTTTTGATA
TTTTATAAGAGTGGGAAAGTGTGTAGATTATAGATGTAGTGGATAGTTGA
ACAGCACGGTGAAGTTCGAGGAACTAAATGACTTGCATGAATGATGAAGC
ATATTGACGTGGCAAATAAGAAAATGTGTTAGTTAAGTATGACATGATAC
TAAACTGACATGGAAAGCTCTGGTAATTTAACAAGACAGAGTTTATGCAA
TACTTGGGTGAAACTAAGAGGTTGCCGTAGCTTATGGAAGTCAGTTTGGT
GTTGCCTGAAGTGTATTAAGAAGATTATGCAACATATTGAACTATAAGTC
AGTTCTCAGTTCTATGCGCTTCTATTTATTTTCCAATATATTTTCCACTA
CCTTGATTGTTCTCTATCTTTCCATCCTTTTGTTTTGTCAGAACCTCCAG
GACCTGATAACTTGGCCCTTCATTTGAAGTTTGAACCTCTGTGTGGCTAA
GCTCTTTTGTCTTCAATTTTTTCTATTTCTGTATATATGTTATCATACAC
TTATCTTAATTCTATAGCTCTTGACTTAGTCGAATATTCTATGCTTCAAG
AGTTTCATATGAATCTATCTCACCATGATATATCTCTTCGTAGTGAGCCA
TGAAATCACATTTCAAATTATGATTACAGTGATCCCGCCAAATGTTAGTT
ACAGATCAAGTGTTTCATGCTAATATGTTCTAGCGTCCATGGACCATCAG
TTCATTTATAACCGTAGGAATTTATGGTTCAGGCAGGCTGAACTAGTGTG
GCACCGCCACTGTTGTCACGACTGCTCTACGACTAGTGGACTAGTCGGTT
TTAACTGGTGAATTGCTGACTTGGGCAACCGCCTTGTCGACTAGTCGGTT
GAATGGTGCAAATTAGGTTAATAGTGAATAAAAAACAGAAAGAAAACGTT
CTTATGTTAAATTTTAGCCTTCATGTACATGCTCATCTCAATTGTTTTTC
TTCTTACTTCTATTCCCCATTGAACCAAAACTGATATAAATGTGTGTTGA
GCTTGTATAAATTGATTAAAACTGATATTGATGTATGTATAGTGTATATA
TATGTACAGTCTGTGTATGTATATGTATATAGGCAATTGCTCAAATAGAA
ACCACTAAAATAAAAACTAAAATGGAAACCAAGAGAAACTATACCTAAAT
GATCTCACCCACCCCCCTATATGTCATCATCCACTTAGGGCCACCCTCAC
CCCCACTCAATCCACCCCGGGCCCGCTAGGGCCTCGCCAAGGCTCCTCAC
AGGCCCTGGCCAAGGCTCCTCACAGGCCCTGGACAGGCTCCAGACAGTCT
TAAAGAGCCAAACTTTGGCCCCACCTTGGTCCCACTAGGCCCCGACCCGG
CCCTATTAGACCCCGTCTAAGCCCATCTCGGGGTCCATCCTCGGTCCCAA
AACCCGCATCATTCTACTTAATCGCATCGGTTTCTATTTAGTTTCTATTC
TAGTAGTTTCTATTGGAGTAGGACCCTATGTGTATATATATATATGTGTG
TATATATATATATATATATATAGATAGATAGATAGATAGATAGATAGATA
GATAAATAGATATGTGATACCAAAATTTTTGATGTAAGAAACCACATACA
TGGGATAGATAAGATATATATTATTTAATATATTGTCGACTAGTTGATAA
GCTGGACCTCCCACAACTTGAGTACTGACGACCATGGGCACCACTGGTAT
CTAGTAGCAAACAAGCAGTGCCTAATCAATTTGTGGAGAAACTAAAATTC
GTAAATTGTTCATAATATTTGAATTTATAAGAAAAATATTTATTTTACAT
ATAAATATATCAAAATTAAAATTTTGGAACTGATGCAATAATGTATTCAG
ATTAATATACAATAAACTAAAATTTATTGCTCCATATAGAATTCTCCTGA
GAAACAACATCCATATGTTACTTGAATATATATATCTCGCTCAAATGTGA
TATCTTCAATATTTTGTACAAAATAGACAATACATAATGTAATTAAATTT
TCGTTAAGACAACTTCATTATTTCCACTAATATAATGACCTTAATTTCAT
GTTAAGACCACAAGAGTTTTCTGTATTTTCACCCTTCTATTCCATTTCCA
CTTATCCATAATATTTTACTAACTTAAATATAAAAACATTGATATTTTAC
ATATATAACCTCTAAAAAGTTGTAATAAAACTTTTAAACCCAAAATAAAA
TGATTAATTCAGAAATTTTTTTTGCTAAATATAATTCAGAATATTTTAAT
TCTTAACTAATTAGGCATTAGGCATGGTTACATATTATGTTCGTTATTAA
AATTTTATTCGGAGGTATTTATTCTTTTTAAGTAAATAACTAATTAGGCG
TTAGGCTAAGGTTATATTTTAAATAATATTACATATGTTTAAACTATAAT
AACTAAAGTAAATTGAATTATCTGGGATATCACAGTGCACAAATCTTGAT
TTAATTCCTATGTCTTCTTTAGTGTGCATGGTGTCACATTATTGCACATT
ATATGTCGGTAATTATTGCTATCTTTTGTAGTGTCGCTTACACAAAAGCA
CGAGATCCGGCAAGTTTATGTGCGAAGTACTGCTCGTACATATGAAATCT
ACTATAAACCTGATGTGCACAGTAGCAATGAGTATCTGTGCACCGTTCGT
TGCAGTACTGCTTCTAGAGAGGATGATTCACTTCATGAAAGCAACCATGG
GGAAGGTTCTACCGAACCTACTAAGGAATCTGACAGGGATTACAAAGAAA
AGAAATCGCCCAGTAGCGCCAATGAAGATGGCTGGGTTGAGGTGAAAAAA
CCAGAGTCACCTGTAGAAGTTATCAAGTCCATGCCAAAAGCTATTTTTGG
TGATGAAAGAAACCTCCAGGTATGGAAATTCAGTCCTGATGGTAATTGTT
CAGTTTAATCCCATTGTGTCCTTGTTTACTTAACAAATGTACTGAAGCTT
CTTTGGAACTGTCATGCTTGTTTACTAGTATTCTTAGTTTGTTTGGACTT
TTGACACTTTACTTGTGTCATGCTCTGTCTGACAGAAGTTTATAAGAAAT
TATTATATTGTAGAAATTATCTTAAGATGATAAGTGGGTAAGCAAGCAAT
TATTTGACCAACAGGATACAGTTTTTGATGAGGGAATCATCTCTAAGGGG
TCAGAAGTAGAGGTAAGTTAATCAAAAGGACATAGTTACTTATTTTGAGT
ATGCACTGATCCTGATTTTAGAAGATAGACTGGAAGTGCAGATTTTGTTG
CTTGGCTCTCCTAATTCTATCATTAGTTTGTTGCTTGGTTGGATTAAATG
GAATGAGGTAGGAATAGTATTGAAAATAAGGTTACATTAGATAGAATGAT
CAATTAAGTGAAAATGGAAATATATGGACAAAATGTATAAATTAACGATG
AGTTCTGTGAAGAATATGAGTAGCATTGTGGGAAATTGGAACGGGTGCTC
ATCTCAAAAAAGGGAGCATTGAGCTGAAGTTAAATTTTTTTGAATGGAAT
TGATGAATGATTCACTATACTGCAACGATGTTCATTTATGTAGTTCTTGC
TTCATTTCATCCATTTTACTGAATATTGCATAAAAGATTTCTTATTATGT
GATGTTTGGTGTGTGTGACACATTGGTATTCTAGTCCACTACTTTTTTCT
CTTTAACTACATAATTATTTAGATTCTCGTTCTTGAAACTCAGATAAATG
TGTTTTTTAGAAGTAAATGGATGGAAATATTCATCATTAACATGAGTATT
GCAATTGTTTAACTCTTCTGGATCCAGTAGTGATCAAATTATGTATCCCA
TGGATGGTTAGCAGCTATTTATGTTTAATTCTCTCCTTATTTGTAGCCTC
TATTTTAGTGCACGGGGTATAGGTTGCTGGGACATTGCTGGGGTTCTTTT
AAGTCTGATATGTGCTGTAGTTCATGTATGACTTTGCAGTGCTACATTGT
GTTGCATTGCTAATATATCAGAGTCTCTGTTTATTTCTTTTTATGGTAAA
GAATTGTAATCCCAATATCCCATGCTAATTATCTGTTATATTAGTTGAAG
CTCCTCCTTAGAATGGTGACACCTTACAAACTGTGTGTCGTGGATATATT
GACCATATGATGATTATTGTAATTTTTTTGCTTTTATTTGTTACCTACCC
ATTTTCCAGTTTTTTAGCCTGTAATGCCCTTCATTTTTATGCCTAAAAAA
ATTGTCATAAACTAAGACTGTATTTAAATTCTGGCCAAATATATGTCAGG
CAATACCTATTTAAATATTATACATTATACATGCATGCATACATACATAC
ATACATACATACATATATACACACACATATATATAGGGATAGGATCAAAT
AAAAACTTTTTTAAGTTGCAAACTTACAAACATTTTTTTTTCAATTTTTT
TATTCTCCCATCGTGTTAATCCTTAGTTATCGAAAGTATTCATGTTGAAA
ATTCTTGAAAAACCATCACGATTTTTAAAAATAACGCATAAATAAATCGT
GCATTTAACACATTTGTAACTGGGGTTCAACATCGGGTGTAGAACACTAA
TTATCATTGTGTTGAATATATCTATAAAGATGCTCAAACTATACCTCTGG
GGTTTGGGTAGGGTCTAGAAACATAAATATTAGTTATATAATACGTTTAA
CTTAGTTCTTACATTGAAAAATTAGTTTATGTACTTCTCCAACACAATTT
TAATCGATGTTCAACAAAATATGTTAAAAAAATGTTGAACTCAAATTATA
TAGGTCTTGAACGCATAAAGTTTGTAAGTTTGTACCAAAATTCGCCTCTA
CATACATATACATAGATACACACACACACACACAGATATTCTTAAAGTTA
TTAATGTATTTATTGTCTGTGATTCTCTGGATATCCACTTTTTGCCTAAT
GAAACAGGTTAATAGATGTCTTGACGTGATCAGTTTTGATCACTGGGTGG
AGTCTCCATTACCATAAAAAACGATCTACTGAAATATTCTCTGCTTTGAG
TGGTTGAAAATTGAAGACCGTAATTTTAAACATGTATGTTGTGGTCTTCT
GTTTGTCATTACTGATATAATTTTTTGAAGCTAATAACATGCAAATTATC
ATATGTAAGTAGAGAAGTACTCACACAAGTCTTTTCTGCTTATTTATATG
AATAGTAATGTTCCTAATGTAAGTGGCTGTTATTTGACAATGTATTTGGA
ATTTTGCATCCATCACTTTGCGACTTGTCTGAAATTGCAATTAGGAACAG
AATGTTGCTTATTTCATTCTCCTTGAATTAGCAAGCAAATAAGATGTTTG
AGTGGTATTGTGGCAAGGAAGTTAAATAAACTGAAGTTAGTGTAGGGGGT
TACTGCACAAATTTGAAACTAGTGATACGTACACACAAGCATTTACATAT
ACATCTACTGATTGGTGAAAAATCTCCGCAGGACTTCTATGAGGCTACAG
CAGAGATTTCTGATGGAGAACCTTCTGTTACCCTCATCATACGTTTGCTG
TCACTTGAAAACAAAGGACTTGTATATGTTGATGAAATTTATGTGTATGC
TGATGCTGTGGAATCCGCTGATTTAGATAATTATGCAGCTCAGAACCTTC
AAGGTGGAGCCTTAGCTGGGAGTTCTCTTATGACTATGTTTCTCCCTACC
CTTTTGCAATTGACAAGGTCTAATGTTGGCCAGTCACAGAATGGACTCAA
TTCTAGGAAAGTGGTCGAAGAAGAGTCTGCTGAAAGGTCAAGAAATATTG
ACTCGACAAATTATTCAAATGAGCATTATAAAAGATCCAAAGTTCTAGAC
CGGCAGGATGCTGAATTCCAAGAAGTTACAGAGGTGACAGCCCAAGCAAC
TCCCCAGTTCAAAAATTTGGCACCAAATGTAGAGAATCCGGGACAATATC
ATTCTGTTGTGGATTGTAATAATCATGTTGGAAGAGTCATGGAACAACTA
AATTCTCGGATGAGCCAAATTGAAGATATTTGTTTGAGGTTTGAAGAGAA
GATGGTACGCCCCATAAGTAGCATGGAGGAAAGGCTGCAGCGATTAGAGA
ACCAGTTGGAAACAATTGTGAAGAACACCCAGACTTCTGAACTTCATTCC
TGTGCAAGATTTTCTGCTCCTGCATTTTCATCTCTAGACTCCACCTCCAG
CTCCTTCTATAATGATGGTTGTGCTAATCCTCCTCATGTACAGTCAGAAG
TGGAAAAACATGAGCCCTCTTGCGATGATATATCTAAGTCAACTGAAGAG
AATTTTAAGTCAGGAAGGGCTCCTCAGTTTATCCCTAGTTATGTGGTTAC
AGCCCCTGAGTTCTTATGTGACGAGGATGATGAACAGAATGATGCTGTGG
CACCATTGAAGGATTCTCCTGGCGAACTACCAAAGAAACCCATGTCTATT
GATGATGCATTAGCTGCGGCACTTGCTGGTTTTTCATCTCTCACAATCAG
TGAACCTCAAAAACTTTCAGAAAAATTTACTAAATCTCCAAACGAGGAAA
TTGGCATTAATGAGGATTCCTTGGATAGACCGCTTGAAGAATCCATACAC
AGGGCCTCGAATTTTCACAGGGACTTGTTAATGAAGAATCCATGCACAAT
GAATGTAGACGTGGAATTTATCAATGAAGAAACTGCTGGTGAAGAGCATT
TGAAATATACACAGGGCCTCAAATTTACAGCCCCTGATTTTGCGAGTGAA
GATACTATCTGTGATGTCAAAGTCCTCACACCTGGAATCGAAGATGTAAA
CCTTGTACATCCTTCTAGAACTTTTGCAACTGATGGAGGTGAAAACATAC
TTGATATAACATCAGCACCCAGCAATCTTTCTGCATTGGAGAAGGAAGAA
ACAAGTATTGTTCGTAAAACCAATGTATCAGAGCAGTTCTGTGAAGGTCA
GACTGATGCTGACACTTTCGGTGGAGCTAATAATTCTGTGTCAGTTAGAT
CACAAGGTGGCTATCCGGCTACAGAAGAAACCAGCGATCTTTCTGCATTG
AAGAGGGAAGAAACAACAATTGTTTGTAAAACCAATGTATCTGAGCAGTT
CTGTGAAGGTCAGAGTGATGCTTACACTGTTGGTGGAGCTAATAATTCTG
TGTCAGTTCGAGCAGAAGGTGACTATCCGGATACTGAAGAAACCAGCCTG
CAGGAATCCAGCAGCCGCAAAGATGAACTACCGATATGGGAGCGGCTTGC
AATTTTACAACAGGTGCATGAAAAGAATAATGCCACTGTTGGCACTAAAG
GGAAAAAATGTGATGAGAGAGACGAATTTGTGAAACATATATTAGCACAA
AAAAATTTTGTGAAACATCTGCTTGCAAAGACCAAAAATAGTGTTGGCAC
TGCAGAGAAAAATTCGGGTCCAATTTCTATCTGCGAGAGAGTCGAACTTG
TGAAACAGTTGCTTGCAAAGACCGAGGACACTGCAGAAAAGATTTCTGGT
CCATTATTAGAATGTAGTGAGGGAGGCTCTGGCAATGGCTTTTCTTTAGG
TAGCGTGAAAGATGACTACTGGGCTACAGGAGAGATTGGGATGCTGGAAT
CCAGTAGCAGCAATATATTGGACAGAATCAAAATTATTGAACAGTTGGGT
GCAAAGATCAAGGATGGTGTAGGCAGTAAAGAGAAAAATTTAAGTCCAAC
TTCGGAATGTGATGAGAGAGGCTCTGGAAATGACATCTCATCTTGGCTGG
ATTTTGAAACTCCTATCCTTGAGGTTAAATTTACTTCCCAGGAAAACACC
AGTTCTGAATTGTCTCTCAAAGCCCTGTTGACTAACACTGAAGCTGATTC
GCAAATTTCTTTTACCCAGAAAAGCAAAGACGATGAGATAACTACAAAAG
AAAATGATTTGGGTTCGGTGGTGATTGAAGAAGGAAATCCGACATGGGAA
AGCAACAACTTCCTTTTGGTTGATTTGGAAAGTTATGATGCACCTGTTTC
TTCAGAAGATGTGGCTGGACACCAGGTTCCCCTCGACATCAAGGAGCATG
AAGTATTACCAAGTCTTATATGAGGCCTGGGTAGTGGATTGTTGGTCGTT
TGTAAATATATCCTGACTAGGTGGTATTACTGCAATCTTTTGTTGTCCGA
CTGCTGGAACAAAGTTTCGTTATGATGGTATGTGTGATATTACATGCAAC
TTATGTATTTCATTCTCGAATGTCCA

Sequence Length:

8926

Sequence Checksum:

6e06e5bafd0088ab440044f18a19b2f1

View location in JBrowse:

DCARv2_Chr9:10623790..10632715-

Cds:

>DCAR_029678cds ATGAAAGTTTCCGACGAAATCACCGGCGATTGCGTCGGAAATCGCAAAAC CTTCAGTTTCTCGTCGAATTGGACGATCGCGAGTGGCTCGTTTGACGATT CCGTGAATTTCGAGTCGTCCGAGTCGCCGATCGACGCGGATGGCGTCGAT TCAGCGGATAAAGCGCCTCTTGTTCTCAAACCTTCAGAATCGGATTCTTC GCCTTGCGAAATCACTCTGTCGCTTACACAAAAGCACGAGATCCGGCAAG TTTATGTGCGAAGTACTGCTCGTACATATGAAATCTACTATAAACCTGAT GTGCACAGTAGCAATGAGTATCTGTGCACCGTTCGTTGCAGTACTGCTTC TAGAGAGGATGATTCACTTCATGAAAGCAACCATGGGGAAGGTTCTACCG AACCTACTAAGGAATCTGACAGGGATTACAAAGAAAAGAAATCGCCCAGT AGCGCCAATGAAGATGGCTGGGTTGAGGTGAAAAAACCAGAGTCACCTGT AGAAGTTATCAAGTCCATGCCAAAAGCTATTTTTGGTGATGAAAGAAACC TCCAGGACTTCTATGAGGCTACAGCAGAGATTTCTGATGGAGAACCTTCT GTTACCCTCATCATACGTTTGCTGTCACTTGAAAACAAAGGACTTGTATA TGTTGATGAAATTTATGTGTATGCTGATGCTGTGGAATCCGCTGATTTAG ATAATTATGCAGCTCAGAACCTTCAAGGTGGAGCCTTAGCTGGGAGTTCT CTTATGACTATGTTTCTCCCTACCCTTTTGCAATTGACAAGGTCTAATGT TGGCCAGTCACAGAATGGACTCAATTCTAGGAAAGTGGTCGAAGAAGAGT CTGCTGAAAGGTCAAGAAATATTGACTCGACAAATTATTCAAATGAGCAT TATAAAAGATCCAAAGTTCTAGACCGGCAGGATGCTGAATTCCAAGAAGT TACAGAGGTGACAGCCCAAGCAACTCCCCAGTTCAAAAATTTGGCACCAA ATGTAGAGAATCCGGGACAATATCATTCTGTTGTGGATTGTAATAATCAT GTTGGAAGAGTCATGGAACAACTAAATTCTCGGATGAGCCAAATTGAAGA TATTTGTTTGAGGTTTGAAGAGAAGATGGTACGCCCCATAAGTAGCATGG AGGAAAGGCTGCAGCGATTAGAGAACCAGTTGGAAACAATTGTGAAGAAC ACCCAGACTTCTGAACTTCATTCCTGTGCAAGATTTTCTGCTCCTGCATT TTCATCTCTAGACTCCACCTCCAGCTCCTTCTATAATGATGGTTGTGCTA ATCCTCCTCATGTACAGTCAGAAGTGGAAAAACATGAGCCCTCTTGCGAT GATATATCTAAGTCAACTGAAGAGAATTTTAAGTCAGGAAGGGCTCCTCA GTTTATCCCTAGTTATGTGGTTACAGCCCCTGAGTTCTTATGTGACGAGG ATGATGAACAGAATGATGCTGTGGCACCATTGAAGGATTCTCCTGGCGAA CTACCAAAGAAACCCATGTCTATTGATGATGCATTAGCTGCGGCACTTGC TGGTTTTTCATCTCTCACAATCAGTGAACCTCAAAAACTTTCAGAAAAAT TTACTAAATCTCCAAACGAGGAAATTGGCATTAATGAGGATTCCTTGGAT AGACCGCTTGAAGAATCCATACACAGGGCCTCGAATTTTCACAGGGACTT GTTAATGAAGAATCCATGCACAATGAATGTAGACGTGGAATTTATCAATG AAGAAACTGCTGGTGAAGAGCATTTGAAATATACACAGGGCCTCAAATTT ACAGCCCCTGATTTTGCGAGTGAAGATACTATCTGTGATGTCAAAGTCCT CACACCTGGAATCGAAGATGTAAACCTTGTACATCCTTCTAGAACTTTTG CAACTGATGGAGGTGAAAACATACTTGATATAACATCAGCACCCAGCAAT CTTTCTGCATTGGAGAAGGAAGAAACAAGTATTGTTCGTAAAACCAATGT ATCAGAGCAGTTCTGTGAAGGTCAGACTGATGCTGACACTTTCGGTGGAG CTAATAATTCTGTGTCAGTTAGATCACAAGGTGGCTATCCGGCTACAGAA GAAACCAGCGATCTTTCTGCATTGAAGAGGGAAGAAACAACAATTGTTTG TAAAACCAATGTATCTGAGCAGTTCTGTGAAGGTCAGAGTGATGCTTACA CTGTTGGTGGAGCTAATAATTCTGTGTCAGTTCGAGCAGAAGGTGACTAT CCGGATACTGAAGAAACCAGCCTGCAGGAATCCAGCAGCCGCAAAGATGA ACTACCGATATGGGAGCGGCTTGCAATTTTACAACAGGTGCATGAAAAGA ATAATGCCACTGTTGGCACTAAAGGGAAAAAATGTGATGAGAGAGACGAA TTTGTGAAACATATATTAGCACAAAAAAATTTTGTGAAACATCTGCTTGC AAAGACCAAAAATAGTGTTGGCACTGCAGAGAAAAATTCGGGTCCAATTT CTATCTGCGAGAGAGTCGAACTTGTGAAACAGTTGCTTGCAAAGACCGAG GACACTGCAGAAAAGATTTCTGGTCCATTATTAGAATGTAGTGAGGGAGG CTCTGGCAATGGCTTTTCTTTAGGTAGCGTGAAAGATGACTACTGGGCTA CAGGAGAGATTGGGATGCTGGAATCCAGTAGCAGCAATATATTGGACAGA ATCAAAATTATTGAACAGTTGGGTGCAAAGATCAAGGATGGTGTAGGCAG TAAAGAGAAAAATTTAAGTCCAACTTCGGAATGTGATGAGAGAGGCTCTG GAAATGACATCTCATCTTGGCTGGATTTTGAAACTCCTATCCTTGAGGTT AAATTTACTTCCCAGGAAAACACCAGTTCTGAATTGTCTCTCAAAGCCCT GTTGACTAACACTGAAGCTGATTCGCAAATTTCTTTTACCCAGAAAAGCA AAGACGATGAGATAACTACAAAAGAAAATGATTTGGGTTCGGTGGTGATT GAAGAAGGAAATCCGACATGGGAAAGCAACAACTTCCTTTTGGTTGATTT GGAAAGTTATGATGCACCTGTTTCTTCAGAAGATGTGGCTGGACACCAGG TTCCCCTCGACATCAAGGAGCATGAAGTATTACCAAGTCTTATATGA

Pep:

>DCAR_029678pep MKVSDEITGDCVGNRKTFSFSSNWTIASGSFDDSVNFESSESPIDADGVD SADKAPLVLKPSESDSSPCEITLSLTQKHEIRQVYVRSTARTYEIYYKPD VHSSNEYLCTVRCSTASREDDSLHESNHGEGSTEPTKESDRDYKEKKSPS SANEDGWVEVKKPESPVEVIKSMPKAIFGDERNLQDFYEATAEISDGEPS VTLIIRLLSLENKGLVYVDEIYVYADAVESADLDNYAAQNLQGGALAGSS LMTMFLPTLLQLTRSNVGQSQNGLNSRKVVEEESAERSRNIDSTNYSNEH YKRSKVLDRQDAEFQEVTEVTAQATPQFKNLAPNVENPGQYHSVVDCNNH VGRVMEQLNSRMSQIEDICLRFEEKMVRPISSMEERLQRLENQLETIVKN TQTSELHSCARFSAPAFSSLDSTSSSFYNDGCANPPHVQSEVEKHEPSCD DISKSTEENFKSGRAPQFIPSYVVTAPEFLCDEDDEQNDAVAPLKDSPGE LPKKPMSIDDALAAALAGFSSLTISEPQKLSEKFTKSPNEEIGINEDSLD RPLEESIHRASNFHRDLLMKNPCTMNVDVEFINEETAGEEHLKYTQGLKF TAPDFASEDTICDVKVLTPGIEDVNLVHPSRTFATDGGENILDITSAPSN LSALEKEETSIVRKTNVSEQFCEGQTDADTFGGANNSVSVRSQGGYPATE ETSDLSALKREETTIVCKTNVSEQFCEGQSDAYTVGGANNSVSVRAEGDY PDTEETSLQESSSRKDELPIWERLAILQQVHEKNNATVGTKGKKCDERDE FVKHILAQKNFVKHLLAKTKNSVGTAEKNSGPISICERVELVKQLLAKTE DTAEKISGPLLECSEGGSGNGFSLGSVKDDYWATGEIGMLESSSSNILDR IKIIEQLGAKIKDGVGSKEKNLSPTSECDERGSGNDISSWLDFETPILEV KFTSQENTSSELSLKALLTNTEADSQISFTQKSKDDEITTKENDLGSVVI EEGNPTWESNNFLLVDLESYDAPVSSEDVAGHQVPLDIKEHEVLPSLI*