DCAR_031835

Resource Type: 
Gene
Name: 
DCAR_031835
Identifier: 
DCAR_031835.gene
Locus Tag: 
DCAR_031835
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_031835, is a part of gene, DCAR_031835.
The genetic_marker, MK006124 K3568, is located in gene, DCAR_031835.
Loading content
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

Loading content
Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_031835DCAR_031835.mRNAmRNADCARv2_Chr9:11831333..11844950
Sequence: 
ATGTGCAGCAAAATATCATCATCTCCATGGATACTGGGAACATCAAAATT
ATCAGTTTATGAGAACCAAACACGCCCTTATTTCACACACACACTCGCTA
CTAAGACTAAGAGCAGCACTTCAGTTAATCCTACAATTTGTGGATTGGAA
TCAGGATCAGATGACTATAAATTTGTCTTGCACGATGCTCTTGATTCTTC
TGGCAACAATACAACTCATGCTCGGGTATGTTGTTATTCAATTATATTAT
TGTTGTTTATATAAATTTTGGAACGAGAGATTGAGGTTCTTGAGGCTGAA
TTCGAATTTCACTTTGAGTAATGTATTCATGTTGAATGTTGTTTATTTCG
AATTCTAAAATCAACTCGCGTGATTATTAGATTTATTGCGTTGGCCTCAC
TAATCAGAATTTGGAACAAGTACACTACAATATACACCTGACGACTTGAA
AGTACCTTATACGTGATAATTATGTTAAATGATCTAGGCTTAATTAGGGA
AATTGAGGGAAGAAATCTCGGAAATGCAGGGTCCGCGAGTTGAGGTAGAG
GTAGAAATTAGGGCTAATTGTTGTGAAAAGTTTTTTTTTTTTTGTTTTCA
CATGCCTCATTTAAAATAATGGTAATTGAGTATGTTTAGTGGTTAAACAA
ATTAAACTATGCATACGTAGTTTTAGTGGTTTTGGGAATTATGTAACTTA
CGGACTTAATTGACTGGTATATTTTTAACTTATGGAGTCAAACATGTGAT
TGTGTAATGAGTAGTGAATGAAATGTTTTTTAGTTGTTACCTTGATGATA
CTTTTGTGTTGATTTTTACTGTCATCCATGTATTCTTTTATTGTACTCAT
ATCTCATAAATATTTTACTACAGATATAATGTTTGTTTTTTGTTATCTTT
TTAGTGTGTGTGGTTGCATTGTTACAGCTATAGTGCAACTTTATTTTGAA
GTGTTTGACTAAATGTAATCAGTTAAAGCTCTGATGTATTTTATCGGGTC
AGGCTGCGAGGGATGGTTTCTGCTCACAGGTCAAAAAATTGACAGTGGTG
GAGAGGGAAACAAGTATAGCTACAAATAGGAGGGTGGATTTGGCGAGAAC
AGCCCTTTATATAGCGGCAGAGGATGACTCCCTTATCTCGCATTCTTCTG
TTCCACTTCCTGTTGAAGCTTTTCTTGAGAGACTAGATGATCTTTCCATG
GGTTACTGCTCACACTTTGGCTCTTCATTTCAGTCCTCACCGGAGAATTT
TCTTGAATGTATGGATACATACTTGTATATTAACAAGGTCAGTGTTTGGA
TAGTCTCTGTGTGCTAAATTCATATACCATTTAGGTTGTTTCCTAAAGTT
TTACCCGGTGACTGATACATGGAGAATATATGAAAATCAATATCTTAACA
GATGTTTTAATCCTCCTCAATTTCCTAGATATTTTGCTTAAACTATCTGA
TGGACAAGATCTAATGTTGTGTTTGGTTGGGGTGAATGATTCCGGAAGGA
ATGGAATGAAAAATGAACTGTATTATGGACAATTGTTAAGAAATTTCATT
CCTTCCTCCATTCCATTCCTTACATTATGTGCTAGATATCACACCTTCAA
TTTAAGATGGAATGCTCCATTCTCTCCTATCCTCAATTTCTTCTCAAATC
TCATCATAGCAATTTTGCACTCTGTCAAGTTTTCTCCAAAACTTACTTCC
TATCTGTATTAGTGTCAAGTAGTTTTACTCATTCCATTCCATTCTCCCCA
ACCAAACACAACATAAGTGAACTAGAAATGGAAATATTAGGAGAATGGAC
CAGTTGGTTGCTGTCTCTGATACATAAATTATGTAACATTATTCTCTTAT
TAAAAGGCATTTGTGTATTACAAAGAAAAAGGTCATCCAGATTGAAAGGG
GGGAACGTGTTGTTTTGAACTACAAAGAGTGGGAAATATGTGTTCAATGT
ATATTACGGGATTGTCTGTAGTGTCCAGTTGAATAAATGCTTCTTTGCCT
ATAAATATAAAAAGTTAAAAAGCATGCAGATCATCTGACTTTATTTGTGA
GACCAAAGATAACACAGTTTTTCTAGTGTATTTACACATATATGACATCC
ACAAGAGTAGTGGGAACCTAGAAATTCTGAATCTAAATACGTTCCCATTT
CCTTTTGATTAGCTTTATATCTTGGACATCCTAAAGATTGATCACACGAA
TTACTTCCTCATATATAATAATGGTGGCAGAATTAGAAAAAATTCAGTAG
AATTTGAAACTAGCAAAAATTACCTTTATATTTGTACTTACAAACATCTT
TATTATCTGCATTAGGACATGAAGCAATTAGGTGATGATGTTTTGGTGCA
GAAATTTTGCTGCAAATTATTTATTTTCCCCGAGTGCTCTTATTAGTTTT
CCATGCATGACTAGGGGCAGTGTGCTCAAACAATTAACTTCATAAGGAAT
ATGTGTATTATGCAGAAGAATGGGGACATGTTTGCAGATAAGAACTCCAG
GAATGATTTTCAGGAACAATTCTACAACTCTCATGCGGAAACTAATTGTA
CAAATGATCTTAATGTTAATAGAACTAGCTGCAACCATTGCTAAAGTCTG
CCAAATAATATCCACAAAAATATACACTGTAAAAAATCACTCATATTTGA
TATAAAGATAATTCTGTAAGATAACTGCCACTGTTAGAATTAGTTCTTAA
CTTATTATATTCTAGTACATGGAAATGAAAAACCTAGAGCTTAATGTCTT
GCGGTCAAATGTCGTGTTTTTGTGTTCACTTGTATTGCTCAATCCCCATT
TTTATAATATGTTCTATAACATTTCTCCTCCATTGCAAAATAAATAAATA
ATAATAAGAAGAAATAAACCTACTCTTTTCAGTTAACTAGACCAGAAAAA
TATAGGAACAAAATGGAGTACCGAAAAATGTTGTGGTTGTCGCATAGTCA
TTTGGTGAGAGGCTCATCTCAGGTGAGGCGCAAAGGGAGAGTGGAACAGT
ATATTTGAGCCATAAGCCCCTAACGTCAGTATGTTTACACTACTTCTCTT
ATGTACCCTCTTCTTCAGAACGTTGCGACTCTACAATGACTTCCTTCATC
TTCTTAACTCATCATCTAATTTCCTTTTCTCTTTAACCTTGCACACACAC
ACACACACACACACACACACTTGTAATTATACAAATTAATCATAAATTCA
TTTAACCTAAATAAATTAGTTAGTTTGTTTCTTATTTATTTATTTTGTGT
TCTTGTTTGTCAATGGTTAATGCTCACCAACAATGTTATTAAAAGCGTGC
ATATGCGCTCGCATATGCAAGGTAAATGCGCATTGTTCTGATTATGCGAT
GCGAGGTTAGAGATGCGCGCGCTTTTCTACGCATGAAGAGCATAAGCGAG
ATGCGAGAAGCGCAGGAAAAGCGCGCTTTTTTATTTTTTTGACTGGGCGA
TTGACTGGGCTGTTGACTGGGTCTTTTTAAAAGAAAAAAGTCATAAAACC
CTAAAACAGACAGACACGCATCTTTGATACCATACAACACGTACATACAC
ATACATAGGCGATCGATTGAACAAGATCTGTGCAGGATAATCTCCTTTTT
GGTAATTATCTTCTTTCTTGTATACACACACACATATATATACACATACA
CACACACATATCTAGACACACACACACACATACAGAAATATATATACATA
ATCTTGTCTATACATATATACTGATTATGATAATGATTATTTAGTACAGA
CATATATTATATATGTGTATATATATGAACATATTATTTATTTTTTACTA
ATAATATATATATAAACACACAATTATATGATATTGTGACGATGATGATG
ATGATTTTTAGTTTATGTCAAATTATCAACTACTAGGATTTTAGATTATC
TATTTGTGCCCTAACTTTGAACCTGATTATCATCAACATGTTCTATGCCA
ATCTAATATGCTTATTACTTGTTACATTTAATTGTTATGCATTTTTTTAT
AATTTTTTACGCTTTGTTTCAAAAAGCGCGCATCTCGCATTGCGCGTTGC
GCTTATGCGCCAGGAGGCCCTTTGCGCTTCAGTGCGCATATCGCATTTAA
TAACACTGCTCACCAGTTATTCCAGACTTCTTGTATGCTATTTGCCTATG
CACAGGATTTATTATGATTGGGATCAGTCTTTGATTTGCTTTTTATTTAT
GAATCGTGAAACTTATTTGAATACTTTGTAGCTTAAAAATGAACAATGCT
TGTTTAATGGTGGATGATTCTTTATATGTAAATAAAACAATGGACTCTAT
AGAACTTAACTCTAAAATATATATCTTTTGTAGATAATAACCCTGTGATT
TTTTTAGGTCTAGGTGCCTATATGACTCCAAATCTTAATTTTAGGTCAAT
GTACTGGCATCAGACACTTGGACGCAACAATTGTTCCTTGTCTGATGCTT
TGCCTGAATGTGGTCAACTTTACCACTGAAATTCTACATACCAGATGAAC
TTAGGATGCAAAAAGAAAATGATGAGAAAGACAGATGTAAAAAGATAACC
TATCCAATCTGAATACCCTCTTTAACTATTATAAACATTCCTATCCTATC
TCAAGGTTATTAGTAAGATAAATACAATTGTGAGAAAAAAATCTGTAACG
AATAATTCTTTGACTTTCTATTGCTAGATTTGGTCCTAATGTTGGGTTTC
TATAACAGTTTGGATTGAACCCATGTCTTTCCACTAATAGTAAGTTCTTT
AGGAGTCCCCACAAAACACAGAAATCCCAGCAAATTCTTCCACCAGTAGT
GTGTACCTTTTACTGTCTGCATTACATAATTTCACATAGTCCTCAAGTAT
ACATTACAATTTTATGTCATAAATTCATAGTTGTTGGTATGTGAGTCAAA
TGCCGATCGACTGGAAGCTAGTTGTTTATTGCTAGACTTAAATCTTTTTT
ACGTGAACTATCAGAGATTATGAAAGCACACTTAGATAATTAGATAACAC
ACCAGTTGATTCTCAGATGCAATTAACATTTTTTATCCACACGAGTGTTA
TTTTGTTAATGATAACTGTTTGACATGTAAGTTATAACACAGATAAAAGA
GGTTTTTCTTGTCAAGCTATTAGGAACGAAATAGTACAGTATAGTAATTC
TGTTACTAGTTTAGCCTTATATTAGTATATGCAGTAGTAAGGGTAGAATG
GTCTATTTCTTAGATATCAGTCACGGACTATTATAATAACTTTCTCTGTA
CGGTGTTGGCCTCCATTATCATAATTTGAAACATTAATGCCCCAAATATC
ACGATCTTAAAAAATGCCCTCCAATATCACTTATTAACGTTATATCGTGT
AGTGTTTTTGATATTAATTGAAAACACTACTTCGCCTAGCATTCTGTTGG
GGTTAAAAGATCAAAACGCGGGTTAAAAAAACAGAACGCTACAAGATGCA
GCGTATGGATCTGTTGGGGTTTAGAAAAACAGAACGCTACACGATGTAGC
GTTCTATTGGGGTTAAAAGAACATAACGCTATACGATCTAGTGTTTTCTT
CCAAAATTAAAAACGCTATATTATCCAACGCTAATAAATGGTATTTTGGG
CCACTTTTTCCAATTCTGTTATTCTGGGCATTACTTGTGTGTTTTGTGAA
ATTTGGGGCCTTTTCTTTGTAATGTTTCATTTGAGATCATGTTATATTTG
AATTTAAAAAAATGGAATATATTTTACACCACTGCTTCCCTCTGTTCTCT
CTCTAAAACCCTAACTTTTTCTACAAGTTCTGTGTTCTTCCTCATTTCTT
ACTAATCTCTCTTTTTAATGCAATCAATCACTCTTATCTCTCACTATATC
TACTTGTTTCTCTCTTATAAAACACAAAAACCTCGAAGTTGTAAAACAAG
TTGGGAACTCCCCGATTCCAAACAAATTAGTATCAAAGCCCTAAATTTGG
ATCAACCAGTGCTTCACCAGTGCGGTGTGTGTCAAAACAAGCTGAGCGGT
TTTAGAACTGTAGTAATTGCAACCTTCAATCTCCAGTTATGTTTGAACCA
ACTCAGGTGTTGTGTTTCCTAATTGCTCTTTACAGTTCAGTACTTGTTGA
GGGTACATCTGTAGTTTCGATTGATTTCTGCTAGTTCTACTTGTTTTTAA
GTAGTTGAGTTTGTTCAAGTGTTGTTTACATCATATAATCACAAAAATAG
TTGTTGTTTGCTAGTTTTGTTGGTTTACTGAGTCAACTCAGTAGTAGTGT
TGTAATATTCTGGGTAATTTGTGAACACTCGAAGCAGTTAAGCAGTTGTT
AAGGTGTTGTTGAGTAGTTTGTGGTTGAATCCTGTCTTTGATTGTGGATT
GGGGAAGTGACTTCTGTGGTGTAGCCAACGTCTTTGATAGCTTCTGTAAG
AGATTATGTGTGCTGATAATTGTATGTCAATAGAGAATAGTGACAAGGCC
TTTAATGAGCTTCTACAAGAAGTTCAACAGCAGTTTCTGTGGTATAGGGA
AAAAGTCGAGTCAGAGGTTGCAGGGTTTGGAAGGTGGAGGAAATGATCGG
AATGGTTGCTGAAAAGATGGAAGTTTTGAACAAGCTGGGAACTCAAAGAA
GAAGGTCAAATGTCTTTGTGAATCCTTTTGCTAGTAGCCATACAGCTGGC
AAGAGTGGTTGCAAGAGTGTGAGTAGTACTTCCTCATATTCAAGATAGGC
GAAAGTAAGAAGGTAACGTTACAGGCCTGCACCGGACTGGTACAACTAGG
AATTGGTTCCAGGTGTATGTTATTGGAAAGGAAAAACTCAAGTGGTCACT
GCTAGGTTTGGGACCTAGAAACAAGAAATGCTGTTTGACAACTTCAAACA
GCATCACCAAAGCACATATATCGAAGATTACTACACTCAGTTTGAAGAGT
GTATGGAGAATCTTAAAGAAAGTTTACCCGTCTTGAATGAGTCGTATTTT
GTGGAATGCTTTATAGGAGGGATACGAGACAAGGTTAGGAAACCTTGAAG
CTGCTCAATCCTCAACCTTAGACCAGGCCTATAGATTAGCCAAACAGTGT
ACAGGAGCTGGGGTCATTAAGAAAGTGAACCAGAATGGCAGTCATGCTAT
CAATACTGCGAGTATTAACAATGAAGGAATGGTGGCTAATCTAGAAATGA
GGCACGAGGGGAACACTACAGATATTTGAGTCAAAATATCTCCAGAACAA
CTCAATGAAAGACTCCGGGAAGGATTGTGTCCTTACCCTGATGAAAAGGA
TGATCCACAACATAAATGTGCCCAACCTTGTTATTTCAATATAACTAGGG
AAGTGGTTGACACCACTAGCAAGAAAAGGGTTTTGGTCAAGGTAAAAGAA
GAGACCCTTCATGAGGAAAAGCAAGAACAAGTAGAAGTATCAGTTCATAC
AATTGAAGGATTTCATAATAACAAGACGCTTACATTACTAGGAGGGAAAA
CCAACAGTTTTCAATACTTGTAGATGGAGGCAGTACTCACAGCTTTATTG
ATGAGCATACTGCTAGTAAACTGAGATGTGAAATGGTGAAAACAAAGCCT
ATGAAGGTACAAGTAGTCATTGGGAACAACTTGATCGGGCAATATGAATG
TGCAGAGTTCTCATGGAAAATAGGCAATCTAGAATTTCAAACTAATGTGA
GAACCTTGCCAATAAGGGGATATGATTTAGTCCTTGGAGTGGATTGGCTG
GGTTCTTTAGGGTTGGTAACCTTTGATTATAAGAAACTGACATTATAGTT
CCAAAACCAAGGCCATTTAGTGACACTACATGGCAATACACAACCTTACA
AACCAAAGATCCAACAAATGAGTGCCAAGGCTTTTATTGTGAGCTGCCAG
AGGCAAGGTAATAGGTTTCCTTACTTGGCTAATGAGCTCAGATCAGAATT
AGCAGGGAAGGGAAGACAGTGAGCCAGAGCTTGACCAACTATAAGGAACA
ACTACAATTGCAAGGGTTATTACATGATATGAGGATATCTTCCGAGCTCC
AACGGGCTTACCACCTCACAGATCTATTGAGCACAACAATGAGCTGAAGG
AAGGATCTCAGCCCTTCTCTAGAAGACCATATAAGAATTCATATGATCAG
AAAAATGAAATTGAGAATGATGGTGAGATGTTGGAGGCTGGGATTATAAG
GTCCAGCAATTCCCCCTATGCATCACCTATCTTACTAGTCAAGAAGAAGA
ATGTATCTTGGAGATTTTGTATAGATTACAGAAAATTCAATTCCTTAACA
ATCAAAAACAAATTTCTTATTCCGCCCATTGAGAAGTTGCTGGATGAATT
AATTGGAGCCCGGGTTTTCTCTAAGTTGGATTTGAGAGCGTGGTATCATC
AAGTGAGAATGAAGCCTCAAGACATTGAGAAAACAGCTTTTAGGACCCAT
GTAGGTCACTATGAATTTACTGTGGTGCCCTTTGAGCTCACTAGTGCCCC
CGCCACCTTTCGAAATTTAATGAACCAATTTTTTGCACCTCACCTAAGGA
AGTTTACTCTCGTCTTTTTTTGATGACATCTTAGTTTACTCAAAGTTTGT
CAAGGATCACATCCCTCATCTAAAGTAGGTGTTCTAAATCATGAGGCAGC
AACAATTATTTGCTAAACTCTCTAAATGTGAGTTCATGAAAACACAGGTG
ACCTAACTTGCGCATATCATCACTCAAGCAGGGGTTGAGGTCAATAAGAG
TAAGATTGAAGATATGGTGTCTTGGCCTCTACCTCAAAATAAAAAGGTGC
TCAGGGTTTCCTTGGGTTAAATGGGTATTATAGGAAGTTCGTAAAAGACT
ATGGCATTATTGCCAAGCCTTTAACCAACTTGTTGTAGAAGGATGGCTTT
AAATGGACTGAAGAATCCACCCAAGCCTTCAATAAGCTTAAACAGGCTAT
GGTTAGTACACCTGTACTTAAACTTCCAGATTACTCAAAGGAGTTTACAG
TTGAAACAGATGCTTCAAACACTGGTATTGGTGCTGTATTAACTCAGAAG
ACCACCCACCTGCTTACTTCAGCAAGGCCCTATGGCGCAAAGGGCAGGCC
ATGTCCACTTATGAAAAGGAATTGATGGCAGTAGTTACTGCAGTTAATAA
GTGGGCTCCCTACCTCATGGACAAACATTTTTTCATAAAAAGTTTCATAA
AAATCGATCATTGGGCCCTCAAGTATCTGACTGATCAAAAAATCAGTAAC
CTCCTGCAACAGAAGTGGATAAACAAGTTAGGAATTCCCTGATTCCTAAC
TCAAGCTCCAAAGCTTAATGTGTCACATGATCAGTACTCACACCAAAGAT
AGTAGGTAGCCTATGTGTAATTGTCTTCAACGTCCACATCATCAATTATA
ACAATAACTATCATCAATTAAAATGAGTTTATAGCCAAGTCTTCAATGTG
GAGACTCCCCTGCAGTTTCTGCTTTTTAATTTTCGTCTTATATTAATATC
GCTATTACATGTTTGCATTTGCATTGATTCAGAAACTCTCTTGTGCCATT
TGTTAACTTATTAGATCTCTGTTTGTCATAAATTGCATGTAAAGATCTTT
TTCAAGGGATATGCCCGTCAGAAGTTGTAAATTGCAATCATTAGTGCAAG
TAGTTCACATAGTTCTTATAACCACACTAGTTTACATGGAAACAGAATAT
TAATGTTATATGTTTGTTAGGAAGAACTTGTTCCCACCCTTCTCTTCATT
GCCTACCATTATATCATGACCTAGAGTGTGCCTTTATCATCCTAGTTCTC
CACTTCTCATCTATTCACTAACTTGTCTTCCATTGTTTTTTGTGTTTCAG
GCTTTCTGCAGACACAGTTCAAAAAATCCATCTGAACAGCGCACCCTTTA
TCTTCACTCTGTATGCAAAACTGCTGCCTTTCTCAATCACTATAGCAGCG
GAATACTTTACCTGCAATTATATTGTTACCTTTTTGTTTGTGTTCAGGTT
TTGACACATCGTTTAGGTTCTGCCGCTATGCTTTCCCTTGTTTATGCTGA
GATCTTGAAAATGTTTCGGATATGGGGTATATTAAACTTTGATGTTGAAA
TTTTCTTTCCTCATGATTCTAGTAGCAATCCTAGAGGCTATATTAAGCAG
AAAAGTAAAGAGTCTGATCAAGCACATATCATGACAACAGAATCCTTATT
GGTGAAGGTACATCTCCCTCATCCCACTAACACGGGGGCACATTTACATG
TATTGCAACTTGCTGAACATCTATGTTTGTTCCATCACATGTACTTGGAA
TTGTTGTGCTTTTAGTTTTAAGATGACTCTAAATGTTGTCATATTCAAGA
AGTCATTGCACTATATAATTAGAAAAAGAAAAAGGCTAATCTCGCACTGG
GACTGCGAATCATAGTCTTTTTTTGTTAATATTTCTTGCTTTTATAAACC
GTTACTTAGGTATTTTAGTAGCTGAATGATGAGGAGTTGCCGAGTTTTGT
GAATACCATAGTTCTATATTTATTGAGTGCCTAGGCTATCTACTTACTGA
TGATTGTTAATGTTTTTGTACAACTTGCGATACATAAAGCCACTTTTGAC
CTGGCACAGTTGGACATATTCCAGTGATATTCAATGAGGGATCAATTTTG
TCAGGAACTTTTTAGGTGTGATTGTACAAGGCCAAGACATATTGTGGTGG
GCACCATAGCTCTGTGTGGACTACAAATTATCTTCAGTAAATTCTTCACC
AAGTGTATCTTTGTGGGTAACACTTGTTTAACAAAAACTATATATATTTA
TATATAGGGCATCGCTCTATGGAGAACGTTTTAGCGTGAGAACTCTAAGA
ACACTATTGTTCTAGTGCAGAACAATACAATATTGAAAAATGTGAAATTT
CTGCAAAACAGTTGTTATGTACTTTTTGAAAAGTGCATAACAATTGTTCT
CACTGTTCTTACATGATATATACTGGAAAAATAAGTTTTTTTTGTTTTTG
GGGGGGGGGGGGGGGTTAAAATTNATTGTATTTCGCAAATGTTTCCCTAG
TAGGTAGGCGCTTTATTGTGTCTTGGGTATAAGGTCATCAAAACAGCTTC
TGTTAAAAGAATAAACTGGGCACCAAAGAGCCTTTAAAAGTTCTTCTAAA
TTACCACTTAAGTGCCTCACTGAGTTATATGATTACTCCATTAACCATTT
TTTTAATTTGGGAAAGAACTCAAGGTAGGGATCAAATAGATTTTGTCGGA
ACTTCACAATGACATTTCACCTATTTGCTTTTCATGTTGCCCTTTTCAAT
TATGTTTACTTTTTAGCTAGTATATTTTGTCAATCTTATGTACTCTGTAA
TGAAATGTTTGCACTCATTATACAACCTGTGAGCAGATCCTGACAGAATT
AAAGGTAGCTTTTTGGCCGTTCCAGCTTGATCAAGATAAGAGTTTATTTT
TAAGGGCAGCAGAAGCTGCTAACTGCTCTCGTAGGTCAAGGAATGTCAAT
GAAAGGTCTATTAGTTTCATTCTTTTGTATAAAATACTTTGAGAATTTAC
TTCTACATTGCAATGTGATTGCCTGCCTATATCTTCCTGTCTTTCTTCTC
AGTATTGTATTATGTCTCATGTAGTGCCTCTGAGCTTGCCTCTGTCAAGG
CTGCACAACATAGGTTAGAACGTGGAGTTTGGACCAGTGTACGGTTTGGA
GACATGAGGCGTGCTCTATCTGGTATGTACTCTATCTGGTATGTACTACT
GTTTTGTTTCTATGCAACAAAACATTTTGTATCATTTTTGTTTGTTTTAT
CACACCTCAGGCTTATTGTTTCTTTTCTCTATATAATACATTTAATGTGG
TAAAATAGCGATAGCAATTCTGTTGTTAGACAAATGAAAAGTTTGGTAGA
TTGTAGTGCTTAGTTGACTGCTAATGACCTCATACATAGCTTAATTTTGA
TTTTGCTAAAACTCTTTGGACTAAACTCTATATATGTAATATGTGAACTT
AAATATATATTTGATGCACAACATGTTTTTTTAGTATCCTTGACTTGATT
ATCTCCACTCCCTGTACAAAGTATGATATGACATTAATACCAACACATCA
AACAAGGTTATGTATTTCCAAACCTAATAAATATCCCCATCATCCTGATT
TAGTTTGGATGCTTGCAGTTTTGCAGAAATAATTATTCCTTAGGTCCAAA
TGATACTTTTCATCTCAATTTCATTTTCTAGAGTGAACATGCAATGGCTC
ATGCTAGACACTGATCAACTATATTGGAAGATAAAATTGCATACAGTTAC
AGAAAATTTCTCTGTAAATGATCTAATGGATGTTCACTCTAAAAATTAGA
AAAAGGATTGAAAATGTAGTTTGAACCTTAAATTTTTCATTGGTATTAGG
CTATATATAGGCATGTGGCTGCGTAGTGTCTGTTACTATACAACTGGCAA
GAATAGTGTTTCTCGAAAAAGGTCTTATTTGATTTGAAATTTGTATCGTT
GATATTAGTATATATATCTTACATAGCCGAAAGTTGGCTCTTCTGTATTG
ATAAAGAGACTGCTTTATGTGTGCTGAAGGTTATTAGAAAGAGGGGATTC
CTTTCCATGTGAGCACAGGCACAGATTCATATATTAGTCTGAACCTTCCG
CAGCTTCTTTGATGTTTAGATTACTAAATTGTGCAACTTCTGTTTCTGAT
GTAGTTACAGGCTCTATCTACTATTAATAATACTACTGCATTCCTGATAG
CAGGCTTGTAATATTTTGTGTTTGAATTCTATTCTTTGATGTTAAAAATA
ACTCCAAGTATGCAACTTCAAGTGAGAGGCAGACTAATTTTGTTGTTGAT
AATAAGACTGTTAAATTTTATTGCAAGTAGTGGTCAGCATTCGATCAGAC
TGACATATTTTATTAGTACTATTATCAGTATCATTTACCAAGTACAGGAA
CTGGTTAATGACTGAAAAATGGCAGTGAAGATTATGTGATATGCGGTCTG
GTTTGAAAACTTGTTCTCAATTCTATGTAATTCCTGTTTGGCAGCAAAAG
AATATGAAGATTTTATCGAAAGATATATAGTTGACATTAGAGGGAAACGA
AAGAAACTAAAACTAAAAACAAGATTAGAATTGATTAATAATAACACAAC
ATACCATTTTTTGTTACTGTTCATGGAGCGCTATCTGGGGGTTCTATGTA
TTATTATTGCACGGTGTTTTCTTTGTTATCAGTTACCTGGTGTGTGTGCA
CAGTCCTTGTATTAATGATTCATCTCTATACTCTCATAATTTTTTTGCCC
TGTTAGCATGTGAGCGTCTTATCCTCCTAAATACCGATCCTAAGGAACTA
AGGGATTACAGTGTGCTCCTATACCATTCCGGTTTCTATGAAGAGTCTTT
GCATTACCTGAAGCTATATCAGGATGCAGAGGTAAGTTGCATATTTTTTT
TGATAAATTAATACCTGAACTTGACTTGCTGCTAAAATTCACTAGTACGC
AAGCTAATCTAGCAACTCTATTTCAGAAATCATCCAATTCCACAAGTGAT
CTGGAAAAAAATGCTGTGGATATGTTGTTGATACGCCTAAACCTCATTTT
GATGGAGGATGGTTGGAGCAGTCCTCCACACATTAGAAACTTCCTTCATA
ACTCGGATCCATGGTAA
Sequence Length: 
13617
Sequence Checksum: 
c00b6a05a096cffed89ec46e9bede6c5
View location in JBrowse: 
Cds: 
>DCAR_031835cds ATGTGCAGCAAAATATCATCATCTCCATGGATACTGGGAACATCAAAATT ATCAGTTTATGAGAACCAAACACGCCCTTATTTCACACACACACTCGCTA CTAAGACTAAGAGCAGCACTTCAGTTAATCCTACAATTTGTGGATTGGAA TCAGGATCAGATGACTATAAATTTGTCTTGCACGATGCTCTTGATTCTTC TGGCAACAATACAACTCATGCTCGGGCTGCGAGGGATGGTTTCTGCTCAC AGGTCAAAAAATTGACAGTGGTGGAGAGGGAAACAAGTATAGCTACAAAT AGGAGGGTGGATTTGGCGAGAACAGCCCTTTATATAGCGGCAGAGGATGA CTCCCTTATCTCGCATTCTTCTGTTCCACTTCCTGTTGAAGCTTTTCTTG AGAGACTAGATGATCTTTCCATGGGTTACTGCTCACACTTTGGCTCTTCA TTTCAGTCCTCACCGGAGAATTTTCTTGAATGTATGGATACATACTTGTA TATTAACAAGGCTTTCTGCAGACACAGTTCAAAAAATCCATCTGAACAGC GCACCCTTTATCTTCACTCTGTTTTGACACATCGTTTAGGTTCTGCCGCT ATGCTTTCCCTTGTTTATGCTGAGATCTTGAAAATGTTTCGGATATGGGG TATATTAAACTTTGATGTTGAAATTTTCTTTCCTCATGATTCTAGTAGCA ATCCTAGAGGCTATATTAAGCAGAAAAGTAAAGAGTCTGATCAAGCACAT ATCATGACAACAGAATCCTTATTGGTGAAGATCCTGACAGAATTAAAGGT AGCTTTTTGGCCGTTCCAGCTTGATCAAGATAAGAGTTTATTTTTAAGGG CAGCAGAAGCTGCTAACTGCTCTCGTAGGTCAAGGAATGTCAATGAAAGT GCCTCTGAGCTTGCCTCTGTCAAGGCTGCACAACATAGGTTAGAACGTGG AGTTTGGACCAGTGTACGGTTTGGAGACATGAGGCGTGCTCTATCTGCAT GTGAGCGTCTTATCCTCCTAAATACCGATCCTAAGGAACTAAGGGATTAC AGTGTGCTCCTATACCATTCCGGTTTCTATGAAGAGTCTTTGCATTACCT GAAGCTATATCAGGATGCAGAGAAATCATCCAATTCCACAAGTGATCTGG AAAAAAATGCTGTGGATATGTTGTTGATACGCCTAAACCTCATTTTGATG GAGGATGGTTGGAGCAGTCCTCCACACATTAGAAACTTCCTTCATAACTC GGATCCATGGTAA
Pep: 
>DCAR_031835pep MCSKISSSPWILGTSKLSVYENQTRPYFTHTLATKTKSSTSVNPTICGLE SGSDDYKFVLHDALDSSGNNTTHARAARDGFCSQVKKLTVVERETSIATN RRVDLARTALYIAAEDDSLISHSSVPLPVEAFLERLDDLSMGYCSHFGSS FQSSPENFLECMDTYLYINKAFCRHSSKNPSEQRTLYLHSVLTHRLGSAA MLSLVYAEILKMFRIWGILNFDVEIFFPHDSSSNPRGYIKQKSKESDQAH IMTTESLLVKILTELKVAFWPFQLDQDKSLFLRAAEAANCSRRSRNVNES ASELASVKAAQHRLERGVWTSVRFGDMRRALSACERLILLNTDPKELRDY SVLLYHSGFYEESLHYLKLYQDAEKSSNSTSDLEKNAVDMLLIRLNLILM EDGWSSPPHIRNFLHNSDPW*