Resource Type:
Gene
Organism:
Name:
DCAR_003422
Identifier:
DCAR_003422.gene
Locus Tag:
DCAR_003422
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_003422, is a part of gene, DCAR_003422. |
| The genetic_marker, MK002170 ESSR-065, is adjacent to gene, DCAR_003422. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_003422 | DCAR_003422.mRNA | mRNA | DCARv2_Chr1:38725224..38738358 |
Sequence:
ATGAATGAAAGAAGTTTATCCGAAAGGAGACTGCGTGAAGAAGAAGAAGA
TAATGAGTTCGAGATTCAAGAATTGAGAGACGAAATACGATCAGCTCGTC
ATAATCGATATATGAGTGGACTCTCTCAAGACTTGCAACTCGGTTCATCG
ATTAATCGGAGAAGAAGCCATGGCAATGATTCTTTCTTTACGCGCTTGTT
CGATTTCTCTCAGGATTGCTCCGTTCATCCGAATAACAAGTAGTTTCTTA
CTCCTCTGAATCACATTGTTTTGAATTAATTTTAAAGTCGCATAATATGA
CCAGACCGATTATATCCATAAGTTCAGTAGGCAAATGAATAGGAGAGGCA
ACATTAGGTCCGAAAAAGTTATGTACATCAATTTGCCAATGCGCGCTCCG
TATATGATCTAATTGATAATGACAAACATTTTAACAGTTCTAACATGATG
TGGACTTTGTGCTGTGTAACAAATTGTTATTTTCTTTATCTGATCACAAA
TATGCGGAAGTGGTATCTTATTTGTAGTGGATTCTTATTGCTCGATATTA
ACATTTCGTAAATGTGTAGACATAAAACAGAGAGCTAGTAAAGTAAGTAG
TAACTTAATACGGTATGAGAGCAGTGGATGTGAGTTTTATTGGTTTTTGG
GGGGTGCGGGGAGTATTGTTAGAACGATATACATAGAAGCCCTCTTAAGA
GTTACTTAACACTAAGTTGATGATTCCCTTGCTTTTGGATCTTAAGTAGC
TTAATAACAATGAGCAGATTCAGAGACTAAGTTGGAATTGGTTTATCAAA
GTCATTAAGTCAGACAAGTGGAATCTAACTTATACTTTGATGGATAATAG
TCAATTTTGTACTTGGATTTGTTACAAAAGTATGAAGGAACACAGTTTTT
AGTGGCTCGTGAGAAAAATATTTTTACTTTGAATAAGCTGAGATAATAAT
CTTAACAACTAGCCTAGTCTTGTTCCTGAAACACTGACTTGCAACATATT
AAAAGACATTTACACAAACATTTCATTAATATATTCATTAACACAGGAAT
CTGAACGTGAAGGATGATGTTTCTTTGAGAAGGTAGAAAGGGACATGAGA
TGAAGAACAAGAACTCATTGGCGTGTCTAGTATGATCAGGTGTTAATGTA
TGGGTAGGTGATGTACAGTGTGAGCCGGTAAGTGAGTGAAAGTATTGTCT
TAAAATAACCATTCCAAAAAAATAAATAAGAATCTGTTTTAGAGGAACTT
TGTGAAGGTGAAAATATAGTTATGTGATATTATTAACTAAGACATGCATG
CTAAGAGAATTGGAATTGTTATCAGGTTTTGACAACTTGTAATATATCCT
TTGATGAGGATTTAGGGTAATAGAGGGAAAAAATATGGAATTTAGTGTTT
CCACCTCTTTAAAAGTAGTAGGGGCCTCCTTTCTAATCACCAGGTCGATG
TTTCCACCTGCCTCTGGTCCTGAAGCAGGCAATGATGAGTAAAACAAATC
ATAACACAAGAAGACTACTGTGTTATTTTAGTGATAGAAAAAAGTTTATA
ATTACACTCAGGACTAGATAGTACATTGAACAGAGTACACTAATATCTTC
GTTAAGTAAGATAGTCCCTAATTGTTTGACCAAAATAGTTTGAATGATAA
GTGCAACTAGGAATTATACTGAAGCGTCTCAATTATAGGTCCCCCATCTA
TGATTTAAGAGTGTCTTTTAACACACACACATTATATAATTAATTGATTA
TCCTAGATATGATAGATTTGAAGAATGCTATTAGTTCAATATAACCATGT
ATGTTCTTGGTGATTTGGAAAAGTTCACTTCCAAATTAAATAGTTTACAC
CAGAACTTGTCTACAAATTTTTTTTTTTGCATGCTTTTTTAATCTGTATT
TTAGCACCCGGATCATTTAATGTTCTATCTTCTATGTGCAGGTGGTATCG
TGTTTGGGAAAAATTTATAGTATTGTATGCAATATACTCATCATTCTTCA
CACCCTTTGAATTTGGGTTCTTCAGAGGATTACCGCAAAACCTTTTCTTA
CTGGATGTTGTCGGGCAAGTAGCATTTGTGTGTGACATGGTTTTACAATT
CTTTGTCGCTTACAGAGATAGTGTGACATACAAAATGATATATAACCGTT
CTGCAATTGCTCTACGGTTAGTTTCCTCCTATCCTCTATTTTGTTCCAAG
TACATATTAAACATGTTGTACTAATCAATGATATTACTCATATACCTTGT
ATGTTTACTTTCTAGGTACTTAAAGTCTCATTTCATTGTAGATTTTCTTG
GGTGCTTACCCTGGGATATTCTTTATAAGGTATATCATGTCGTTTATTGT
AAGGCTTTAAGATTATGAAAAAAGACTAGGGTTCCTTCCTGATTATGATA
TTACAGCTGCTTCTTGCTAAGCATCTTTATCTTGTTAGAAATTGGTAAAC
AGATATAGCTTGTTCCTTTCTTTTAATATTTCTTCGTTATAAGTGAGTAT
AATAGTTAATTATAAGGCACTTCATTAACCGAGATTAAGAAATGATAATA
TAACTAACAATTGGTGAATAATATTTAGTTTTGAGATTACTCTTATGCAT
TAATTAACAACACTACATTTTTTTTTAGTTGACAAGTATCAGATCTTTGA
CGGTTATAAACAGGCACTAAAAACTTGATATCATGTAGTTTCCAAGTACC
GAACCTTGAACATATTTTTAGCTGAATGTGATTTTTTTCTTTTTTTTTGC
TAAGCATGATAATTAAACACTAAGATATAGATATTTTGTTTTTTAGCCGC
TAAATATCTCATGTTATATAGGGTATACTGATCTATTATATAGCAGTAGT
TACATAGGAATTTCTTTCATCTGTAGAGTAAACAATCCGCTCAAGTCTAG
ATGTAGACAACTATGAGAATAACTATTATATATATGGTTCAATCCTCTGC
AGTATTGATTGGCTTTATCAGTTTGAATCACTATCATTTGGATTTGTGTC
TCTTTTGTATTAATCAGGCATCTGGAAGTAGCGAAGAAGTGAGATTTCTC
CTTTGGATTAGATTAAGTCGGACGCGAAAAGTTCTTGCTTTCCTGCACAA
GTTGGAGAAGGACATAAGGATCAATTATCTCTTTTGCAGGATTTTAAAGC
TTCTTATCGTTGAGATATATTGTACTCATACAGCAGCATGCATATTCTAC
TATTTGGCGACCTCTATGCCAGCTGACAAAGAAGGCTATACATGGATTGG
CAGTCTACAACTAGGAGACCACAGTTATTCAAACTTCAGAGAGATTAATC
TATGGAAGCGTTATTTAACATCTCTATATTTTTCCATTATTACTATGGCA
ACTGTTGGTAATTTCTTTTCAGCCTTAAAAATTACTCCCTCCCTCCCTCC
CTCCCATAATAAACGTCCTCTTTTTTTTCAAGTTTTTTTCACGCATTTCC
AAGCTTATAAAATTGGTTCTTCTGATTATATAACTGATTTTTTTTCCTTT
TACAAATGACTCCCTTAATCTTTCACATGATTTTATTGACTTCTTTTTCT
ATAATTTGATCAGATTTTCAAAAACAAATATCTAAAATCATTTTACTATA
TGTCATGTAATGAGCAAATTTAACAAATACTATATGTTCCTTAACAAGTG
TATTAAGTGTTTACCCTCCAGGTATAGTTTAGTCCTGGACTTTTGCAGCT
TTTTTTTTTGTGCTAATACAAAGTTGATTATTGCTGAAGGTTATGGAGAC
ATACATGCAGTGAATCCCAGAGAAATGATATTCGTAATGATATATGTATC
TCTTGATATGGTTCTTGGTGCCTACTTGATTGGTAACATCACTGCTTTAA
TTGTAAAAGGATCGAAAACAGAGAGATATAGGGATAAAATGTCAGATATT
TTCAAATATTTAAGCAGAAATAGACTTGGGAAGGACATACGTAGACTTAT
CAAAGATCACTTGAGGCTACAGTATGAATGCAGTTACACTGATTCTGCTG
TTCTCCGGGATCTTCCTATCTCTATTCGTGCCAAGGTAGAACAATCAAAT
CTGTTCAGCTTCGTATTTGCTTCATTTTTTCCCTCAAAATTGCTGTTCTG
TATCTGTATTCATAAATTTGAGATCGAGAAGTAATTTAATTTTTTATGCT
AAGTGATCTGAACAATGTGTTATACAACCAAGCTTTCCTTTATATTTGTA
CGTCCATTCTTCATAAAATTTGTAAACCTCTTATCCCAATGTGATTCGGG
ATCTTCTACTACAAATTTGAGCAACAACTATTAAGCTCAACTCAATTCGA
GCTGCTTATTGGGCAAAAATTTTGTGCTTGACCCTTGAGTTATTTAATAA
GCATGAAGCCCTAGTTGAGTGCACCTTATTGGGCGTGAGCTTTTTCTTGG
CTGCTGATCAACCCTACTTCTTATTAATATTTCTTTTCCGAAATATTTTT
TGGGCTAGAATATGCTCCGGCTACTGGTTGATAATTTCTGTTCTTCAAGT
GTCTTCATGTATGTCTGTGTGTGTCTAATAATTTACACACTTATCTGATG
TTCCATATCATATTGTTCCACACTTTATTCAAAAGTATTTTAGCGAGTTC
ATTCCTCTGTGCAGATCTCCCAAAACTTGTATAAGCCATATGTTGAAAAG
GTTGTTCTTTTCAAGGAATGCTCCGCAGAGTTCATTAGTCAAATTGTAAG
TGATTTTTGGGTATCTTATTTTCTCCAGTTGAGACACAATAATTCCAACT
TGCTACTTCGTATGTGAACATATACTTCATTATTCTCTTATCAGGACATT
CATGTCTAGTTGTTGGATTGACTAAAAGTTAAACTTCCTTTTTTCTTCCA
TAAAGTTGCTCGCTCAAAGGCCACAAATTGAAAAAAATCCAAAGCAATGT
AACTTATGGAGTTTTTATTGAAATGATTGGATCTCTTATTCATGTGAATA
CATTAAGAATGATTCTTATGTTAGGGATATAATTGGGTATTCTTATTTTG
TCTTCTTTATATATAACATATACTAGATTATAATCCATGCGAAGCACGGA
TTGAGATAAAATTGTTTTTGATATTTTATTATCTATTAAAAATATAATTT
ATCCTATTAATGTCGTAATAGAATTTATTAATTAGCCTTGTACTGTTTCA
TAATAATATTTATGAAAATTAATATTACATATATTGAATCATAACTTTTT
AAGTTAATTATTTTATGTAACGATGCAAAATGATTTTATGTATGTTATTT
ATTTTATCAGTTTGGAATATTTAGATCACCTTTATGATAAAAAATTTGTT
TTTTTGTTTAATTGTAATTCGTGTACTTTTAATTTTAAGTTGTCACTATG
AGGTTTTAATTTTGTTATTTTATTTTTTTACTTTGGTCAAGAAACATTTA
CAAATGTCGGTATAAAAATGATTTATGTATCTTATTTAGTTTATAAATTT
GAAAATAAGAAAACGGCTCCATGATAAAAAAAACTTAGCTTTTTTTTATT
TATTTAAATTCTTGTACTTTTTCAGTATTTTTGTTTAGAGGTTTTAATTT
ATTTTTTTAGTTTGGTCCACTCAAAAAATTATATATGTCATGTTCTAGGG
AGTTGCTATATACATTATGTAAAATAGTAAAATTTAGAAAAAGATGGAAG
ACTTAGAAGAAAGGTAGTATGATTGTGCAAATAGTCTAATTAATTAATTA
ATTATTTGTTTAAGACTTTAAGTAAAGTCTTTATTATTATGGATGCTGTT
TACTAGCAAAAGGCAGAACAAAGTGTGAGGGTATTTTGCGTGTCATGTAC
CTAAAATGAAAGCACAAACACTAAATTTTTGTTGTGTACAAAATTGCGAT
GTCTATTTAAATTACACTAAATAGTCAAATAGATAAGTTCATTAACCTAA
ATAATTGTCATAATTACTCAACACAGCTCATGCATTATGTGTTATATAAT
TGTGAAAAAAATTGTATTTTAACTATATATTTATGTAAATATAAATATTT
GGCCCCCCTAAAAAATTATGTTTGTTCACCCCTAAAAAATATTTAACACT
GTAAAATAAAGTTTTAATTCTTAGATTTCTCTAGTTTATATATTAGACCA
AATTTAAAAAAAAAAACATGCATATATACAATTATACTATTTTAAAGAAA
AAAGATCATGAAATTTCCTATGTGATAAAGGTAAACGTTAATATGGTTTT
TAAAAAAAAAAAAAAAGAACATCCGAGGAAGATCTTTCTTATTCCAGAAA
CTTATACCTCAGTTCTTCATTTTTGTATACATTATCAGTTTTTTAATTAA
TATTGATATTAATATTGATCTACTCATCCTCAGTTCAATTTTCATTATTT
AGGTAATATTTTTACTTGTTTAAACTATAACTTGTCATCTTCTTAATAAC
CATAATATTTAATTTTTAAGAGATTTTTGAAATTTTTTGGCCCCCCTTAT
AAATGTTTGTTGGCTTCGTCCCTGCAGAAAGGTCTAGAGTTTTATCCTCA
TCATCATCATAGCCTCGTTGCCCAGCCCTTACTTCCTCACAAGCAAAAAG
TGATTAAGCAAGAAGTAGAAAGTGTGTGGTGTTATTTGACACCTCTGAAC
TTGAGTTCATGACTTAAACTGGCTATGCATGTTTCTCTGACTGGAAGGAC
AATTTTCTAGGGCTTGATATTAATGATTCTGGTACAAATGCTTTAAATAT
TATCTTTTTCTTGCAGGTAAATAGAGTTTGCGAGGAGTTTTTTTTTCCTG
GAGAGTTGATAATGGAACAGGGGGATGCAGTTGATCATATCTATATAGTC
TGTCATGGTGTTCTGGTATGTCTTTGTTTATTACAAATTTTAATAAGTAT
CCCCTTCTTTATTATACTAAAATTGACATTATCAGAAATTAGTTATTGGT
GCATGGTATTTTGTATTTTAATAGACTATAACAGGTTCCTCCGTATACTA
TTACCATCGTCCATCTAGTACAATCCCGATAAGTAGGTGAATATGTCAGT
AAATTCATTTCCTAGATTATAAGATACTGGTTTTTGTAAATAAAAGACAT
GCAAGCAGTACATGTTGCAGTTTGAGCAGTTTCTTCTACAGACTCCTCCC
TGCTGAGGGAACATGGAATAAGTGAAGGTAAGAGGGCAAAGAATCTGTGC
CTCTTTCATTCCAGTTGATGATGTTGATACAGAGTTAGATAGAGATATAT
TCCTGAATAGACGTTAAGATAATAATGAGTCAAACTTAAGTTATTAGGTG
AAAGACTAATCATCTGTTTGGCCAGCCAATCAATAAAGTTCACTAATAAA
CCCTTTGTAATTAGGCAGGTGATGCAGTAAAACACCAAAGATCGTGGCTT
AAGCGCACATGTCACTGATACAGAGAATTAAATACAGGCCTAGAAGACAC
ATGTAGAGCTAGTTGAGACTGGAAGAATTAGTTTTCAAGAGTGAAAGACT
ACCACGAATTGCAATTATTAAGCTCTGATTAAAAGCGCAATGGGAAGGAG
AAGGCGTTACTTAACAGTGTAGGGTTCCATATAAAATGGGNCCACCACCA
CCAAAAAAAAGAAGAAGAAGAAGAAGAAGAAAAAGGTCTCCAATTTTCTG
AGCTTCTCACCTGATGAAGAATTATCATGACAATGGCCTTGGCCTCGACC
AATTTTAAGAGAGTGAAGCAACTAAAAAGTATCACATGTGCTACTCTGAA
GATGAGTCTCCTCAACCAAGTTTAAGAGAGTGAGGCAAGAAGAAAGCATC
ACATGTGTGCTACTCTGAAGACGAATCGACTCAATCTGAATGCACCGTAT
GCTGAAGTGAATCACATGTGTGCTACTCTGAAGACGAATCTCCTCAAGCT
GAACGTAACCGTATGCTGGAGTAAATGGTGCCTTCTCCATGATAAGTCTA
AATAGAATTATGTCAAATTCGTTTAGATGGAATGGATGTGGTTGACATTT
CTCTGTATTTTGTTTCTATTCTTTGTCCGGGGGGAATTTTGGTGCAGTTG
AAATTCAAATAATTTGTACTCCCTCCGTCCCAGCCATTTGTATACAAATG
GTTGGGACACGGAGACCAAGAAATTGTGTAAGAGATGAGTAAAGTTGGAT
GAAAAGTGGGTATAGTGGTGGGACCCATTTATATTTAATAATAGATTTGA
GATAGTGGAGGAAAGTAGTGGGTGTAATAGTGTTTATATTATTATAGAAT
GAAGATAGTGGAAGAAAGTAGTTAGCGTATTGATATTTTATATTATAAAA
GTTTACTACTTTTGGAATGTATACAATTGGTGGGACGTCCCAAAAAGGAA
ACTGTATACAATTCATTGGGACGGAGGGAGTAGTAATCGAGCTCCTGCCA
CATTACTGCAACTGTAAGCTTTGTATCATACTGAGTCATTGCCTCCCCCA
ACCCATACCAAAGACATCCTAACAGTTTCTTACTGACTTTGAAGAGTTTT
GACAAGTTCTAATAACCTGTTGATCTTGTTGCAGAATTCCAAATTGCTTC
TGCTATGTCATAAACAAGTTAATGAAGTTATAAACCTAGCTAACTTTCAG
ATACTTTGGAGAATTATAATAAAAATAAGGATTCAAGACTGGTACCAATT
CTCTAGATTTTGCAGGAATTATCAAGAAGGTTCCACACCTTCTGTTTACG
CTGTATGATTGAACTATTTATACTACAATATATTCCTGCCGACGTACGTA
CTTTAGCATTTTAATGGTTCCCTAACAGAATCCCTTGTGGTGCAGGAGGA
GGTCACTGTACGTGACAATGGTGCAGAAGAAGAAGTTGCTCTCCTTCAAC
CTAGCAGCTTATTTGGTGTAGTTTCAATTCTTTGCAACATTCCCCAACCT
TATACCATCAGAGTTCGCGACTTATGTAGGCTTCTTCGGCTTGATAAACA
AATTTTTTCCAATATCCTTCAGATATATGTGGATGACGAGCAAAGAATCA
TCACAAACATACGAGAGGTAGATACTTTGTGACCATAGTGATTGACTTCA
CCTGAGCAGCATAAACAAACACACATCCATATCTGTAAACATGCATGTCT
GGTGAAAATCTTAAATTGATGTGTACCTCTTCTCAAGAATTGAACATGTG
TATAGATCTTTGACTTCAAGTACTATATGCATGTTCATTGTCTGATAATA
TAAATTTTTAGGGGAGAGTCAATCTACATGTGAAGCAACTGGAGTCTGAT
ATTACCTTTCACATAGGAAAACGAGAGGCAGAACTTGCTACACAAGTCAA
TAGTGCTGCTTATCATGGTGATTTGCTTCAGCTAAAAGGATTAATTCGGG
CCGGAGCTGATCCTAATAAGAAAGATTATGGCGGAAGGTCACCGCTGGTA
TGAATTAGCTAAGTAATGGTCATTTAATCCTATATGTGTATGTTGCCCGG
AAATTTTATTTTATTTCATAGAGATCATGCATAAGACTCATTTTTTAATG
CTGTTTGAAGCATGTAGCTAAGCTAAAACTGTCGACATTAGATATGGTGG
AAATTCCTACCGAGCATACCTTTAGTTTCGAGAATCAAATTTTTTAGCAG
ATATTCTTCCTGTCACATTCTATTAATTTGAATTATTTACATTTGTTTAA
TCATTGATTCCTTTGGTTATTAGGTATATATGTTAATCCAACCTAGACCT
TTCTTTTACAGTTTGACCGTCGCATAATGTATTAGATCTAGCGTGAAGGA
AACAAAAGAATTACATGCATTGCATAAATGTACAGTAGAGTTAGATTTAT
GGAGTTATAATAGTATTGGAGTCCCAACATATTTTGTTGTGGAACATGTT
GTATCTCCATAGAACTTTTGCCCACATATAAGATAAATAGATGGCAGAAA
TTAACCAGTGTCTTGGTGAAAACAACTTTTGATAGCTTTAACTTTTGGTT
CATGCAATACTACCAAGGTGAACTTTTTCAGCAAGTCCATCAAAAATATA
AGCATTAGCTTTACTTATATTCAGAAACAAAAAATAAAAGTTTAGTTCTA
TACAAGCTGCAGGATACTTATATCTTGAAACGATTTGATTACTTTCTTTG
CACATGTGCATCTTACCAGAAAGAAGCAACTGTATCTGACAGAGTATTTT
GCTTACAGCATCTTGCTGCATCAAGAGGACACGAAGATATCACGATTTTT
CTCATTCAAGAATCTGTAGATATTAACATTATAGGTAATCACCTATCCTA
GTTTGAATATTCACAGTCTTTGTAGATTCTTTTGTGATTTTTTTAAAGCC
TCGTTATATTAACTATGTAGGTGGTGTTCTTTTACTGCATAGATAATTTC
GGGAATACACCTCTGTTTGAAGCCATCAAGGGTGGTCATGGTCAAGTTGC
TTCTTTGCTAATTAAAGAAGGAGCAGTCCTGAAAGTCGATGATGCTGGTA
CTTTCTTGTGCACAACAGTTGCAAGGGGTGATATAGATTTTATCAAAAGG
GCTCTATCCAGTGGTGTTGATCCAAATTCTAAAGACTACGATCATCGAAC
TCCGCTTCATGTAGCTGCCTCACAAGGGTTTTATTTACTTGCGAAACTGT
TATTGGAAGCTGGGGCTTCTGTTCTATTGAAGGACAGGTATAAACAAATT
GGCTTTTCTCATGATTGAGATTAATATCAATCTTTCAAGTTTGTTCTCAT
TAAAGTTCCTTCTCATGATTGAGATTAATATCAATCTTTCAAGTTTGTTC
TCATTAAAGTTCCTATCTTTTTCAGCCTGTGCAACATGTGTATTCATGCT
AATTAAGTAACCATAGCCTAATTATGAGGGGAAGATACGTTAGAAGGTTT
ACAAAGATTTCATTGTAATGCTGCTTTCTTTAGACCCATTTGACTTTTGA
GTGTGTAAGATACTTTATCGATGAACAACCTATAATAGTTTCACAGATAT
TCCCACGAATGTTTTTAATATATAGGAAATAACCTTTAACATGTCATGAG
TGATAATACTCTAATTTGAGATTTGTGAACTTGTAATGGAATTAAGATAC
AACATGTTATCACTCGTTCAGTTACATATCACACCTTGCACGTGTGATGG
TCAATGAGATTGTTGTATTTCCTAATGCCTTGTTTCAGGAATGCTTTTGG
TTGCATTTGTAATTTCATATTGTTATTCTAACATGGGAGCTATGTTACCC
GGACTCGACTAAAAGTGTCCAACATGGATACATGTTGGACTCGGCAATAA
TTTGAAAATTTTACATGTTTTTGGCTTAAAATAAGTATCAGAGTGTCCGT
ACTCATGTCCAAGTGTCCGACACGGGTACTCGAGACAAAATGAAGAGTCC
GGTTAACATAACATGGGAGTATATGACTAGATATCCTTCTCTGGAAGTAA
ATGTATGTACCAAATAGTGTAGCTGATACTAAGTAGATGAGCAAGATGAA
GCCCGAGTCATCTTAAATCATATTACCACTGTAGTATTTAAAGTGCAGCC
TATTACTCTCAGACTCTCATCCCTTGTTCATATTTGCAGTTATATTCTTA
ATAGGCCTGTGTATTGATATTTTAAATATTGCACAAACCATGGCGGGTAC
AGGTNCTGTGTATTGATATTTTAAATATTGCACAAACCATGGCGGGGACA
GGGTATATATATCTTTGGGCTAGTGATCAAATACAAACTAAAAATCAATT
CGGCGATCACTGTTTACAACTACAGGAATCTCTAGTTTATACAACATTAA
TCACTGTTTTATACGGTAAAATAAACAACTTTTATTTTTCATAATTAAGA
AAATCTACTTATGTTAACTATTGGTGATCGATTATTGATGATCAATTGTA
GTTGTAGGAGTTCCATGACGGTAGTAAGTAATGAGAGGAGGTGTGTTATG
GTGGTAAGGAGTCGCTAGTTGTGGTAAGTTATGTTGGCAATCTGCAGCAG
CTATTAGTGATTGTAGGTTATGGTGTCAAGTCATAAAAGGTGCTGATAAT
GGTGGCAGGGGGTCTATTATTGCAGTACGGGTGAAGATGATGATCATATT
CGTTGTATATATACATGTATGTATAAATTAATATATTAGAGATATATCAT
ATATAAGAAGTGGTTTGTGATGTACAAACTGGTGATTTCTGTAGTTAAAA
ATAATGATTAAAAATTGATCAAAGATTGGTTTTTATTTTGTAGGCTAATT
TGGTTTGTATTGGAGTAAGACACTCCCTTTGTGATAACTAGTTATGTATA
ATAATGATAATAATAACAAGTTAACAACAACAAAAAGAAGATGAAGAAGA
AGTTCTTTTACACTAACAAAAGATCATGTCCTTTTGTTATTGCAGATGGG
GAAATACCCCACTTGATGAAAGCAAAATGTCTGGAAGCAAGCGCTTGATT
GAGCTACTGGAAGAAGCAAAATCTATTCAATTATGTGAATTTACTGATCG
CTCTCAAGATATCACAGGCATGGAAAGTTTTAAAATTTCATTACAATTTC
ATATACTGTATACACTTAATATCTAGATAATTCTGACTAAAATATAGACT
AGGGAGACTTAACATGTGTGTACCTCCTGCATAAGCTCACTCCCATCTCA
AATCCAAGCAAGGTCTGTTGGCCCCTCCCTTGTCTTCTTGATAGCTCAGC
CTTTTAATTTCCTAACAATATAACAATTGATATGACCTTTTCCGCTTGCT
TATGTTGATGACCTTAGAATACCCTCCTATATATCAGTCGTGGTTCTTTC
TCCATTTTATGTTTCAGATATAGTTCTTTTAACTGTTCTGTACTATCTGG
ACCAACATATAATTTGTAGTTGCCATTCCTTTTCATTCTTGATGTTTCTT
TGACAGATACTACCTTGTATCATGTTTCAATAATATTGATGAACTCTTTA
GACTTATGTGCACGATACCAATAAAATTTTCCTTTATGATGACAGCTAAT
CTGCCTACTAAGAAATGCACAGTGTTCCCTTTCCACCCTCAGAAGCCAAT
GGACAGTGATCGCTATGGGGTGATATTGTGGGTACCAAGAACTATTGGCG
AGCTCATAGAAACAGCAGCAAAGCAGCTAAATTTTTCTCCTAATTCTTTT
ATCGTATCTGAAGATGCAGGTAAACTGCTTGATGTAAACATGATAAGTGA
TGGTCAGAAATTGTACTTAATTAATGAAAGATAA
Sequence Length:
13134
Sequence Checksum:
ae1a5c07ab15d3ed319dffe84aa556d1
View location in JBrowse:
Cds:
>DCAR_003422cds ATGAATGAAAGAAGTTTATCCGAAAGGAGACTGCGTGAAGAAGAAGAAGA TAATGAGTTCGAGATTCAAGAATTGAGAGACGAAATACGATCAGCTCGTC ATAATCGATATATGAGTGGACTCTCTCAAGACTTGCAACTCGGTTCATCG ATTAATCGGAGAAGAAGCCATGGCAATGATTCTTTCTTTACGCGCTTGTT CGATTTCTCTCAGGATTGCTCCGTTCATCCGAATAACAAGTGGTATCGTG TTTGGGAAAAATTTATAGTATTGTATGCAATATACTCATCATTCTTCACA CCCTTTGAATTTGGGTTCTTCAGAGGATTACCGCAAAACCTTTTCTTACT GGATGTTGTCGGGCAAGTAGCATTTGTGTGTGACATGGTTTTACAATTCT TTGTCGCTTACAGAGATAGTGTGACATACAAAATGATATATAACCGTTCT GCAATTGCTCTACGGTACTTAAAGTCTCATTTCATTGTAGATTTTCTTGG GTGCTTACCCTGGGATATTCTTTATAAGGCATCTGGAAGTAGCGAAGAAG TGAGATTTCTCCTTTGGATTAGATTAAGTCGGACGCGAAAAGTTCTTGCT TTCCTGCACAAGTTGGAGAAGGACATAAGGATCAATTATCTCTTTTGCAG GATTTTAAAGCTTCTTATCGTTGAGATATATTGTACTCATACAGCAGCAT GCATATTCTACTATTTGGCGACCTCTATGCCAGCTGACAAAGAAGGCTAT ACATGGATTGGCAGTCTACAACTAGGAGACCACAGTTATTCAAACTTCAG AGAGATTAATCTATGGAAGCGTTATTTAACATCTCTATATTTTTCCATTA TTACTATGGCAACTGTTGGTTATGGAGACATACATGCAGTGAATCCCAGA GAAATGATATTCGTAATGATATATGTATCTCTTGATATGGTTCTTGGTGC CTACTTGATTGGTAACATCACTGCTTTAATTGTAAAAGGATCGAAAACAG AGAGATATAGGGATAAAATGTCAGATATTTTCAAATATTTAAGCAGAAAT AGACTTGGGAAGGACATACGTAGACTTATCAAAGATCACTTGAGGCTACA GTATGAATGCAGTTACACTGATTCTGCTGTTCTCCGGGATCTTCCTATCT CTATTCGTGCCAAGATCTCCCAAAACTTGTATAAGCCATATGTTGAAAAG GTTGTTCTTTTCAAGGAATGCTCCGCAGAGTTCATTAGTCAAATTGTAAA TAGAGTTTGCGAGGAGTTTTTTTTTCCTGGAGAGTTGATAATGGAACAGG GGGATGCAGTTGATCATATCTATATAGTCTGTCATGGTGTTCTGGAGGAG GTCACTGTACGTGACAATGGTGCAGAAGAAGAAGTTGCTCTCCTTCAACC TAGCAGCTTATTTGGTGTAGTTTCAATTCTTTGCAACATTCCCCAACCTT ATACCATCAGAGTTCGCGACTTATGTAGGCTTCTTCGGCTTGATAAACAA ATTTTTTCCAATATCCTTCAGATATATGTGGATGACGAGCAAAGAATCAT CACAAACATACGAGAGGGGAGAGTCAATCTACATGTGAAGCAACTGGAGT CTGATATTACCTTTCACATAGGAAAACGAGAGGCAGAACTTGCTACACAA GTCAATAGTGCTGCTTATCATGGTGATTTGCTTCAGCTAAAAGGATTAAT TCGGGCCGGAGCTGATCCTAATAAGAAAGATTATGGCGGAAGGTCACCGC TGAAAGAAGCAACTGTATCTGACAGAGTATTTTGCTTACAGCATCTTGCT GCATCAAGAGGACACGAAGATATCACGATTTTTCTCATTCAAGAATCTGT AGATATTAACATTATAGATAATTTCGGGAATACACCTCTGTTTGAAGCCA TCAAGGGTGGTCATGGTCAAGTTGCTTCTTTGCTAATTAAAGAAGGAGCA GTCCTGAAAGTCGATGATGCTGGTACTTTCTTGTGCACAACAGTTGCAAG GGGTGATATAGATTTTATCAAAAGGGCTCTATCCAGTGGTGTTGATCCAA ATTCTAAAGACTACGATCATCGAACTCCGCTTCATGTAGCTGCCTCACAA GGGTTTTATTTACTTGCGAAACTGTTATTGGAAGCTGGGGCTTCTGTTCT ATTGAAGGACAGATACTACCTTGTATCATGTTTCAATAATATTGATGAAC TCTTTAGACTTATGTGCACGATACCAATAAAATTTTCCTTTATGATGACA GCTAATCTGCCTACTAAGAAATGCACAGTGTTCCCTTTCCACCCTCAGAA GCCAATGGACAGTGATCGCTATGGGGTGATATTGTGGGTACCAAGAACTA TTGGCGAGCTCATAGAAACAGCAGCAAAGCAGCTAAATTTTTCTCCTAAT TCTTTTATCGTATCTGAAGATGCAGGTAAACTGCTTGATGTAAACATGAT AAGTGATGGTCAGAAATTGTACTTAATTAATGAAAGATAA
Pep:
>DCAR_003422pep MNERSLSERRLREEEEDNEFEIQELRDEIRSARHNRYMSGLSQDLQLGSS INRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFT PFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRS AIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLA FLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGY TWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPR EMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRN RLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEK VVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEE VTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQ IFSNILQIYVDDEQRIITNIREGRVNLHVKQLESDITFHIGKREAELATQ VNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLA ASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGA VLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQ GFYLLAKLLLEAGASVLLKDRYYLVSCFNNIDELFRLMCTIPIKFSFMMT ANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPN SFIVSEDAGKLLDVNMISDGQKLYLINER*