DCAR_029910

Resource Type: 
Gene
Name: 
DCAR_029910
Identifier: 
DCAR_029910.gene
Locus Tag: 
DCAR_029910
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_029910, is a part of gene, DCAR_029910.
The genetic_marker, MK001087 GSSR-088, is located in gene, DCAR_029910.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_029910DCAR_029910.mRNAmRNADCARv2_Chr9:17577413..17588774
Sequence: 
ATGTTGTACTCTTTAACAACTCGTCATTTCTTCCCCTACACTCCTCCTCA
TCTTCCCACAAAAACCCCACTCAACCCATCCCTAAAACCCTTCAACTTTA
CTTTCACTTGTTCAACAACAAGAAGAAGATCGTACGTGGTTCGCGCAGCA
GCAGAGTCCAATGACAAACAAAATGATGATTTTGTGACCAGGGTTTTGAA
GCAAAATCCTAGTCAAGTAGAACCCAAGTTTTTGATTGGTGATAAATTGT
ATACATTGAAAGAAAAAGAGGGTTTAGTTAGCAATTCTGATGACGGCCTT
TTCGGGTTCTTGTCGAAAAGGAAAAGGGAGGAGGAGAAGGTTTCGAGTCG
AAATGAGAGTGGTGATGTGTTTTTGAAGGATTTATTGAGGGAGTATAGGG
GGAAGCTTTATGTTCCCGAACAAGTGTTTGGGCAAAATGTTTCGCAGGAG
GAGGAGTTTAAGCGCAATCTAGATGTTTTGCCTAGAATTACCTTTGAGGA
TTTTCTGAAAGCGATGAGGAGTGATCAAGTTAAGGTGTTGAGTTTCGTGG
AGGATAATGGTGCTTCTTGGTTTAGGGATTTTGTGGTGGAGCTGAAAGAA
ATTCCGGGAGATAAGAACTTGCAGAGAACTAAGTGGTAATATCTTATAAT
CTGCATTATATATTGATTCTATCTACTTGGATGTGTTGAACATGAGTTTT
GATTGTGTAAGGCCAATGTATTATTCTTTTAGGACGATGAAGCTTTATAA
GGATCAAGCAAAATCTGTTTTGGAGGAATATACAGGGACTCGATATGAAA
TTGAGAAGAACCAATTAGTGGTATGCTGTTTGTGCTCTTTTTTTTTTTGC
CTGGCAAAATATCTTTGCAATCTTTAGACATTGTGGCTTGTTGAGAGGTT
TTTTTTATTAACGGGAAAAGATGTGGAATTTTTTGCAAGTCACTTACACT
GTGTTACTTTCCCCTACAGCTTTAATTTGTCTGGCTACATTCTAGATATC
TATGTTCGTCTTTGAAACTGAAAGACATTGTTGTGCAATATGTGACCCTT
TTCCATATTTTTAAGTAAACAATAATGAGGAATAAGGTCTAGGACTGGGC
TGTACGCCTGCCATGTGCTGAGTTTAGGATCCATTTGTGTCTTTCGATAC
TTTATGAAAATTCTTTTTGTTGTCTGATTTTCTTTATATTTTCTTTACTT
ACATTAAATGTATAGTAAAAATACAGTACCCTTGTTTACATGTGAGTATA
TACATGTGCAGTCATCAGTGGGAAAACTACCAGAATATCCTCATCCAGTA
GCATCTTCTATATCGAGCAGGATAGTGGTGGAATTGGGGATGCTGACTGC
TGTAATGGCTGCAGCTGCAGCTGTTGTTGGAGGGTTTCTAGCATCAGCAG
TCCTTGCTGTTACAAGTTTTGTCTTTGTAACAGCTCTATATGTTATATGG
CCTATTGCCAAACCTCTCCTTAAGCTCCTTTATGGTCTTGTATCTGGTAT
GATAGAGATTGTGGGGGAGAAGGTTGGTGATTTATTAAGTGATGGAGGGA
TTAACTCAAAGTTGTATGAAATATATATATCTGGTAATGTAGTCACCACT
CTCCGTTTATTAGTACCTATCATCATGGTATTTGTGTCGATGGCTCTTCT
TCTCCGTTTTACCCTTTCTAGAAGACCCAAAAATTTCAGAAAATGGGTGA
GCATGTAATATTATTTATTTAGAGTAAAATAAACTGATACCTTACATGTT
GCATACTTGTGCAGCACATATATTATATATCTGTTCTTGCCATTTAACAG
GACATATGGCAAGGAATAGAGTTTTCTCAATCGAAACCACAAGCTCGTGT
TGATGTGAGTTTTTTTTTTTTTAAATTTAAATTTTAATTTATTGACATGC
TTATTCTACTTTTTTCATGCATATGACTGCGACATGTTTATCTCACAAAA
ATCTTATATCTAATTACCTTAGGGTTCAACTGGAGTTACATTCAGTGACG
TTGCAGGGATTGAGGAAGCCGTAGAAGAGCTGCAAGAGGTCAGTTCAGAA
TGTGGCAGATGTCTTCTTGAAATTAATATATGTTAAACTAGTAGGTAGTT
GTCTGTCTATTGTTAGTTGCATGTTACTGTTCAAGAGGAAAGCAATATTT
GTAGTTGCTTTCCTAAGCAAAACAAAATAATAAAGGTCATTTTTTAATAA
TCTTTATCTGTCATGGTTGCAATATCTATGTACTTTGCCATGACCTTTTC
CTTGTGATTCTAAATTTTTTATCATTTGACTTTTATTTATGGTCTGTTCA
TGCTCATATTACTTTCCATAAATTGTTCTACATGGTATGTTATTATCACT
ACCATATTAGGTTCATCTTTTTACTTTATATTTTTTGGAATAAAGTGATC
TCTTTGTGCCTTGATATTTGTATTTAGGCTTTCATTAGCTGTCATACGAT
CAACCAAAATGGCTGTCATTTATGTATTTTTGCTGATTCAGCTAGTAAGG
TATCTGAAGAATCCGGAACTATTCGATAAAATGGGGATAAAGGCTCCACA
TGGGGTTCTTTTGGAAGGCCCTCCAGGATGTGGCAAGGTATGGTTTACTT
CCATACATAGCATTTTTTGCTAAATCATACATAGCTTTTAAATACTTTTA
TGTAAATAAATAGAAATCCTTTGTAGACCCTGGTTGCCAAGGCCATAGCT
GGTGAAGCTGGTGTTCCATTTTACCAGATGGCTGGCTCAGAGTTTGTTGA
AGTACTGGTTGGTGTTGGTTCAGCTCGGATCAGAGATCTATTTAAACGTG
CTAAGGTATAATAAAGACTTTGTAAAGCTAGCCTTTATTTCTGGAGGTAT
TCACCTCCACTGTCCACATTCTACATGTCTCTATTCTGCTAATCTATGGG
TTGCCACTCTTATACATGTTTAACACTAAGTACTTTGTACTGTGTAGTGG
TGGGTATATAAATAAGGATTACTCAATCTTGGTAGTATCAGGCAATTGTT
TAAAAGTCCATATATGAGCTTACCTTTCACTAACGCATAGAACATGCTTG
TACATTTCTCGATTTGAATACCTTCTGCACATTACAATTTAAATGCTATA
ATGTCTAATCTAATTGGTGCAATTCATATAAAAATACCTTAATTTGCTTC
TAGGAAAGAGGCAACACTCTCTTTTCCCCTCTTGCTTCCTCTGTAAAATT
TGGAAATAGATTAATAGAATCAAATTTTTTGGGGCCACATACAAGAAGAG
AAAGCTTCAATTATGTACTAATCCTTTTAGAAGATTATGTGCAGAATGAT
TTGACAATAATTTCGTTTCTTTTGTATACTTGATAGCCATTGTTGTCTCG
GCAGAAAGTCGAATCGAGTCAAGGGAGATCCAGCTGAGCGACTAGTCAGA
CATATTGATAATCATAAATTTTGTAATAAATAATACTATATACACAGGTC
ATATTCCATGTAGAACCATTGGGCATAGAACCCTTAGAACCATTAGCTTA
TTTCCAGTATTAGTTAGGGTTCTGCAACAGAACTACACATGAAAAAAATG
TCTTACTTATGTATTATATTTTGAAATTACTTTTGAACACACACAACGAT
GCAAAAAAACATGTATTTAGATTTAGATCCTGAAAATCTATGTAAAAAAT
AGGGTTCTGCAGCAGTACCTTAGTGGTTCTATGGTTCTATTTTAAGCATT
GGTTCTCTCTTGAGCGCGATAATACACACACACACACACACACACACACA
TATATTTTCACATATTTGGTTTCTCACAGCAGAAGTTCAACATTTCCTTG
TATATTATTTAGAAAGTAGATTTATTAGTTACGAACATGTATATTGTATA
AATCTTCATTTCCATATACATACATATATACTATAACAGCTATAACAGAT
AGGCATATATATGCATATACACTCACTACATAGACACACACACATATCAC
TTTCTATTCAACAAGGCGGGTGTTCAGCTGATTAGGGTTTTATGAAATAA
GCTCTTTTCTTCATTTTGTCCAATTTGGGTTGGATTTTGATTGGGTTTTG
CACTAGTTGACTGACTAGTTGACAAGTCGACCGAATAGTTTCCCAAGTTG
ATCGATTAGTCGACAATCAGTCAGTCGAACTTCTTTTCTCAACTAGTCGA
CTTCTCGACTAGAACGACAAGTCAAGCTCCATAAAAACTATTGGCATGAC
ATTGTTTTTTACTTTCTCTTACCTTAGAGAAACCAATGTGTCAAAACCCC
GCTTATCTCCAGGGTAATGATGTAATTTATGTCAAGCTGATGCAAGAAAA
GAATTTAACCAAAGGAAAATGATAGAATTTTGTGGATTAACTTTTAGAAA
ACTTACCGCCCTAAGGTTGATCCAACCGCATAGCAGAAGAACAACTATTC
CTATGATTTATTGATCGCAGAAGAGGGGATTTATTTTGGATTGCATCCCA
TACAAGAGAGAGATCAATCTCGATTCAATTAATCACTCAAAATTTTCCAA
TAACAGAAGATTACATCTGCTTATGGAGAGGTCTGGAGGAGTAAATCCCT
AAACTCAGAACTCAGCTATCAAGTTAATCTAAATAATGAAGGAAACAAAT
CCTTTTATTATACTCCTACTATAATTTATAATATTCCTAATTTTCTACTG
ATATAATAAATCACAATCGACTTTATTCCATAAGATAACTACGATTAATA
TTTTAAGTCCATGTTCTGCACACAACTCACAAGTCTACATTAATTCTTTT
ATATCTTTATATTGATACTTTTTTGACCCACTGAATCTGGAAGTGGCCCT
TTTCCACATAAGTGGTAGGGGTGGTAGTAAATTATGCTTCTCCATATATG
TGGATTGTGGCTACATCAGGATCAGTTTTAGTAGATGTTAGTTGTTTTTG
TGTTGTATAGTATTATGAACCACGTTGTTTAGCCTTAAGCCTTTTGGTAA
CTATCATGTTTGATGCAAATGGCTAATAGTAATGATAAATCTTTAAGTTT
CTAAAGAAGATTTGGCTTAATTCACTGCGCAGGTGAACAAGCCTTCTGTA
ATCTTTATTGACGAAATCGATGCTTTGGCTACAAGGTACGAGTGTCTTTA
ATATGGGAAACTTACATTAATTTTTTATATTTATAATAAGATGTACTTCT
TATGGTGCTGTTTGTATATGTAAATACCAGCTTTCTACCTTCTCTAGATC
TCCATGCTAATGTAACATGTACATTGTCCAATAATGTATATTATGTATAA
ATTTATGATGCTAATCTTTTTCGTGTTGGATTAGTATGATAATGCATTTC
ACTAATTACCATCTAGGCTTTTCCAAGACAGTAAAGAAACAAGTTTACAA
CTGCATGGGAATTTACTTTTTATTGTAAGGGTTGATTTTTATTGAACCTA
ATTTGTCTTGTTCAATATTCTTTATGAACTTACACCTTCTGGCATTTGCA
AATCCTGAAAATATATAAGATCTTTTGTCAATTAGTAAGAATTTTCAAGG
GTCCAGGACATAGCAATATATTTCAGTGAATCTATTTGATGGCTAATTTA
GACTGAATTGTTCTTGTTTGTACTAGAAAACGTTTTCCCTCTTCCATCAT
AACTATTATATGCTCTAATTATTTAGATCCATATGGTTAACATAGTCACT
CTAGACTGAAGTTGAATATGTTACTACCAATTTTAATGGTTGACAATGTC
TAAAGCAAATATGAACAGCTAATATTGTGTAAGATGCAGGAGTTAATTAT
CTAAAGATTGTCAGCTAACTTCTTTGCACTCAAAGATAAAACCTCCTCTT
TTTTTTCTTTGTATACGTTCCCGATTCAAATAATAATCATGGTCACATGG
GACGGGGTTCGATACGAAACGCGTACCGATAATTAGCGAAATAAAAACTT
CTAAGTATTACGACAATTTGCTTATGACATTATAAATTGTAATGATATGC
CTTTTTCAACTGCTGCACTATTATGTAAAAATTCACATATCGCGTTGCGT
GTTGCGCATGCTCCAAGGGGTCTTTTCGCTTGGGTGCTCATTTTGCTTTT
GTTGACACCGAGCGTGACACTTTTGGTAAAATCAATCTCAATTTTGATGC
GAAGCATTTACTAAAAATATGAGATGCTATAGTAAAAGATTAATAGCTAG
ATTGAAATAGTTTTGTAATTAATCTTAGAGTCATCAAGACCTGCTAATAA
ACTTGGATAATCAAATTTTTGTTGCTTGATAAAACGAGAGATTATGGTTA
AATCTCCATCCCTCCAGAAAATTGACTTAATATCTCAATCTGCAAATTAA
TTGGAATGATCCTTGTTTTAATCCTTTCGTAATAATTAGGCGTCAAGGAA
CATTTACTGATTCCAAGGACCAGCTATACAATGCAGCTACTCAAGAAAGG
GAAACTACTTTGAATCAGCTATTGATAGAGCTTGACGGCTTTGATACAGG
GAAGGGTGTTATATTTTTAGGTGCTACAAATCGAAAGGATTTGTTAGATC
CTGCACTTCTTCGACCTGGTCGTTTTGATCGTAAGGTTTGCTTCTGCCAA
CAGAACAGCATATCTTTAATTTCCAATATGTACAATTACGTCATAAAGTC
ACAACCACATATACTTTGGACGGTAGGTAGTAAACTATGACCTATAACTA
TGACCTATTTTAAAACATGTACTCTCCCTTTGTTAAATATATCTACTACA
AAACTTGGCCAATAATGCATGCATCTTGTCCAGTTATTATATTTATTTTC
GGGCTATATAAAATGGACCAGTTTCTTGCTTATTATGGTTTAAAGTTGAC
GAGACCTGATAAATTGATAATACAGGAATATTGTATGTGCTGTATACATT
CTTTCAACTTCGGGTTTAGACCTACTGCTTTCGGTTTTCATACATTACTT
GGGTATCATGCTTGCCATTTGTTTTACTTCTTGTAGATTAAAATCAGCGC
GCCAAATGCAAAAGGAAGACTTGAAATATTGAAAGTTCATGCGCGGAAAG
TGAAACTGTCCAAGTCTCTGGATCTGTCTACTTATGCCCAGAATCTGCCT
GGTATGCTATATTCTTTGAACTAGTGGTGCCCCTGTTGTGCATTTGAACT
TCTACCTTCAACAAACACTCGATAAAGTTTCACATTCACTGTTTTCCTAA
ACTATTCTGTTACGTTCTTTAAAATGTTGGTTTGCCCTTTTCTCATTGTA
TTTTACCTTCCTAGTATGCTCTTTTCTTTTATAATTATAATATGTGTTAG
TGTATTAAGGGGGCGTTTGGTTGATGGTTAATGAGCCCGGTTAACGGGAA
TCGGAACCTAATACCCATACATTGTGTTTGGATTAGTAAAATTTTTGCTT
GGAATGGGAACCTCATTCCCTTTTTAAGGGTAAATCAATACCTCCACACC
CCTTGGGTTATCATTTCCCATACCCTCCATTCCCATACCTCCCATTCCCA
TTCCCCATTCCCATTCCCACCAATCATCCAAACACCCCCTAAATATGTAT
TGATATGTCAATAATTTTTATTGTATACTTAAAATGTAAGGCACTCCCTC
CGACCCATAACTTTTGTCTTGTTTCACTTTTACAAATTGACCAAACTTTG
ACTAAATATTACGTATATTATATATCTAAAAGAAATTATATTTTTGCGTA
TATTTAATCTACTTCAGTAAAAATATTTAGATTTCTAAAATTATAAAAGA
AGTATGTGTACTCTTTAGTCAAAGTTCGTCAGTTTGACCTCAAAAAGTCA
AACAAAACAAAATTATGGATGGAGGGAGTATAATGTTGATATCCTTAAGC
TTTCAGTTTATGAAAACTTGTCTCATTTTTTGCTTCTAATTATTTATATA
TATATATATATATATATATATATATTAATTGTTGGTGGTTTACTAGATTC
CGTTTACCCATATATATGTCTTGATAACTACAACAGGAATTTTTTTCCCC
ATAAGTGCAGTTTATGTTTACAGTTGGCTAATAATTCTTGTCATTTCATT
TTCTAATATAAAGAATTCTTTGATAGGATGGACAGGAGCAAGGTTGGCTC
AGTTACTCCAAGAGGCTGCTCTTGTGGCAGTGCGAAAAAATCACAATGCT
ATTATGCAGCCAGACCTTGATGAAGCAGTTGACAGGCTTACAGTCGGACC
AAAGCGTGTTGCAATAGAGTTGGGTCATCAGGGGCAATGTCGTCGAGCCA
CAACTGAAGTAGGGACTGCATTGACTTCTCATCTGCTAAGGCAACTTGAA
AATGCTAATGTGGAATCCTGTGACCGTATATCAATCAATCCTCGTGGCCA
GGTCTTCTTTTCCATCTTTATCACATTCTCCATTTTTTTTTCTCACACAA
ATCTACTGAGATTCTTTTCCGCCTTACTGACTTGGTATGGACGTATGGTA
AGGTGTAACTCATGACATTAACATTGCTCAAGAGTCGAGGCAGTTGTTAG
ATTGTGGAAGTAGTAGGCCTGCAATTAGGATAAGTATATAGGAGTATATA
GTAATAAAGTATATTAACATGTGCATGAGATGATATGCTTAATGTTTATT
TATTGTTTTAATGATGAACAATTATGGATGCAGACGTTGTCTCAAGTTGT
ATTTAATAGACTTGATGATGAGTCGTATATTTTCGAGCGTCGGCCTCAAC
TACTTCACCGCCTTCAGGTGTGACTTAATATACCGACTTTTGAATTTTCT
GATCTGGGTAGATCCCTTCTTTATTTGGAATTTCTTAAATTCTGTTGAGT
TCATTGATAATGAAGGTTTTACTTGGAGGGAGAGCTGCAGAAGAGATAAT
TTTTGGCCGGGATACATCAAAGGCATCAGTTAACTACCTTGCTGATGCAT
CATGGCTTGCTCGAAAGATTATAACAATGTAGGTATTCCTTGATCTAACA
GCTTAATTTAGGCTTTTTATTCTTTTTAGGAATTTGTATTATTTTTTTGT
TTTTCTTAATTCAGTTGGAATTTGGAAAATCCATTGGTAATACACGGAGA
ACCTCCTCCTTGGAGAAAGAAAGTCAAATTTGTGGGGCCTCGTCTTGACT
TTGAAGGTTCATTATATGATGATTACGACCTGATTGAGCCACCAATCAAC
TTCAACTTGGATGATGAAGTTGCGCAAAGAACAGAACAATTGATGCGTGA
CATGTATGATAAGACTGTTGCTTTATTGAGGGAGCATAATGCCGCTTTAC
TAAAAACTGTTAAGGTATGCTTGTTAATTTTAAATTTTAATTAAAAAGAT
CTTGTTGCCCCCTACTTACAAGTTTCATCATCCCTTATCCTTTTCAATTA
ATGTTTTACACCTGTCTTTATCTATTTGACTAATCATTCGATTTNGAAAT
TTTTTGATTCTAATTATTTATATATATATATATATATATATATATATATA
TTAATTGTTGGTGGTTTACTAGATTCCGTTTACCCATATATATGTCTTGA
TAACTACAACAGGAATTTTTTTCCCCATAAGTGCAGTTTATGTTTACAGT
TGGCTAATAATTCTTGTCATTTCATTTTCTAATATAAAGAATTCTTTGAT
AGGATGGACAGGAGCAAGGTTGGCTCAGTTACTCCAAGAGGCTGCTCTTG
TGGCAGTGCGAAAAAATCACAATGCTATTATGCAGCCAGACCTTGATGAA
GCAGTTGACAGGCTTACAGTCGGACCAAAGCGTGTTGCAATAGAGTTGGG
TCATCAGGGGCAATGTCGTCGAGCCACAACTGAAGTAGGGACTGCATTGA
CTTCTCATCTGCTAAGGCAACTTGAAAATGCTAATGTGGAATCCTGTGAC
CGTATATCAATCAATCCTCGTGGCCAGGTCTTCTTTTCCATCTTTATCAC
ATTCTCCATTTTTTTTTCTCACACAAATCTACTGAGATTCTTTTCCGCCT
TACTGACTTGGTATGGACGTATGGTAAGGTGTAACTCATGACATTAACAT
TGCTCAAGAGTCGAGGCAGTTGTTAGATTGTGGAAGTAGTAGGCCTGCAA
TTAGGATAAGTATATAGGAGTATATAGTAATAAAGTATATTAACATGTGC
ATGAGATGATATGCTTAATGTTTATTTATTGTTTTAATGATGAACAATTA
TGGATGCAGACGTTGTCTCAAGTTGTATTTAATAGACTTGATGATGAGTC
GTATATTTTCGAGCGTCGGCCTCAACTACTTCACCGCCTTCAGGTGTGAC
TTAATATACCGACTTTTGAATTTTCTGATCTGGGTAGATCCCTTCTTTAT
TTGGAATTTCTTAAATTCTGTTGAGTTCATTGATAATGAAGGTTTTACTT
GGAGGGAGAGCTGCAGAAGAGATAATTTTTGGCCGGGATACATCAAAGGC
ATCAGTTAACTACCTTGCTGATGCATCATGGCTTGCTCGAAAGATTATAA
CAATGTAGGTATTCCTTGATCTAACAGCTTAATTTAGGCTTTTTATTCTT
TTTAGGAATTTGTATTATTTTTTTGTTTTTCTTAATTCAGTTGGAATTTG
GAAAATCCATTGGTAATACACGGAGAACCTCCTCCTTGGAGAAAGAAAGT
CAAATTTGTGGGGCCTCGTCTTGACTTTGAAGGTTCATTATATGATGATT
ACGACCTGATTGAGCCACCAATCAACTTCAACTTGGATGATGAAGTTGCG
CAAAGAACAGAACAATTGATGCGTGACATGTATGATAAGACTGTTGCTTT
ATTGAGGGAGCATAATGCCGCTTTACTAAAAACTGTTAAGGTATGCTTGT
TAATTTTAAATTTTAATTAAAAAGATCTTGTTGCCCCCTACTTACAAGTT
TCATCATCCCTTATCCTTTTCAATTAATGTTTTACACCTGTCTTTATCTA
TTTGACTAATCATTCGATTTTAAGGAAACAATAAAGTTTCTAGTTTACAG
AAACATATGGTATCCAGACATAATCTTTATTGTAATTTATTGTTCGACTC
TCTATCTGACCAAATTTACATTGTCCCAAAGTTTTTTTTTTTATATCTCT
TGTGAACATTTTTTACTTGATAGTGACAATACTCCAAAAGTGATGTATTT
AGCATGCATAATAAGCGACTAAATGTACAAGTTGTTTCTTGACCTTAGCC
TATTTTGTTTTTTTTGGTGGGTTCCGCTGACATAGTTGGATGATATATTG
GCACAAATGTTACTTTGCTGACTCGTATAATTTGCAGGTTCTTTTGAATC
AAAAGGAGATTACTGGGGAAGAAATTAACTTCATCATAAAAAATTATCCT
CCACACACACCAACAAGTCTTATATTGGAGGAGAGAGATCCAGGGGGTCT
TCCATTTAGGCAAAGTCAAGAAGAGGAGAGTGAAGTGGAATATAGTATGT
TGCCTCAATAA
Sequence Length: 
11361
Sequence Checksum: 
cae704fff879372709e89ec3ee65d818
View location in JBrowse: 
Cds: 
>DCAR_029910cds ATGTTGTACTCTTTAACAACTCGTCATTTCTTCCCCTACACTCCTCCTCA TCTTCCCACAAAAACCCCACTCAACCCATCCCTAAAACCCTTCAACTTTA CTTTCACTTGTTCAACAACAAGAAGAAGATCGTACGTGGTTCGCGCAGCA GCAGAGTCCAATGACAAACAAAATGATGATTTTGTGACCAGGGTTTTGAA GCAAAATCCTAGTCAAGTAGAACCCAAGTTTTTGATTGGTGATAAATTGT ATACATTGAAAGAAAAAGAGGGTTTAGTTAGCAATTCTGATGACGGCCTT TTCGGGTTCTTGTCGAAAAGGAAAAGGGAGGAGGAGAAGGTTTCGAGTCG AAATGAGAGTGGTGATGTGTTTTTGAAGGATTTATTGAGGGAGTATAGGG GGAAGCTTTATGTTCCCGAACAAGTGTTTGGGCAAAATGTTTCGCAGGAG GAGGAGTTTAAGCGCAATCTAGATGTTTTGCCTAGAATTACCTTTGAGGA TTTTCTGAAAGCGATGAGGAGTGATCAAGTTAAGGTGTTGAGTTTCGTGG AGGATAATGGTGCTTCTTGGTTTAGGGATTTTGTGGTGGAGCTGAAAGAA ATTCCGGGAGATAAGAACTTGCAGAGAACTAAGTGGACGATGAAGCTTTA TAAGGATCAAGCAAAATCTGTTTTGGAGGAATATACAGGGACTCGATATG AAATTGAGAAGAACCAATTAGTGTCATCAGTGGGAAAACTACCAGAATAT CCTCATCCAGTAGCATCTTCTATATCGAGCAGGATAGTGGTGGAATTGGG GATGCTGACTGCTGTAATGGCTGCAGCTGCAGCTGTTGTTGGAGGGTTTC TAGCATCAGCAGTCCTTGCTGTTACAAGTTTTGTCTTTGTAACAGCTCTA TATGTTATATGGCCTATTGCCAAACCTCTCCTTAAGCTCCTTTATGGTCT TGTATCTGGTATGATAGAGATTGTGGGGGAGAAGGACATATGGCAAGGAA TAGAGTTTTCTCAATCGAAACCACAAGCTCGTGTTGATGGTTCAACTGGA GTTACATTCAGTGACGTTGCAGGGATTGAGGAAGCCGTAGAAGAGCTGCA AGAGCTAGTAAGGTATCTGAAGAATCCGGAACTATTCGATAAAATGGGGA TAAAGGCTCCACATGGGGTTCTTTTGGAAGGCCCTCCAGGATGTGGCAAG ACCCTGGTTGCCAAGGCCATAGCTGGTGAAGCTGGTGTTCCATTTTACCA GATGGCTGGCTCAGAGTTTGTTGAAGTACTGGTTGGTGTTGGTTCAGCTC GGATCAGAGATCTATTTAAACGTGCTAAGGTGAACAAGCCTTCTGTAATC TTTATTGACGAAATCGATGCTTTGGCTACAAGGCGTCAAGGAACATTTAC TGATTCCAAGGACCAGCTATACAATGCAGCTACTCAAGAAAGGGAAACTA CTTTGAATCAGCTATTGATAGAGCTTGACGGCTTTGATACAGGGAAGGGT GTTATATTTTTAGGTGCTACAAATCGAAAGGATTTGTTAGATCCTGCACT TCTTCGACCTGGTCGTTTTGATCGTAAGATTAAAATCAGCGCGCCAAATG CAAAAGGAAGACTTGAAATATTGAAAGTTCATGCGCGGAAAGTGAAACTG TCCAAGTCTCTGGATCTGTCTACTTATGCCCAGAATCTGCCTGGATGGAC AGGAGCAAGGTTGGCTCAGTTACTCCAAGAGGCTGCTCTTGTGGCAGTGC GAAAAAATCACAATGCTATTATGCAGCCAGACCTTGATGAAGCAGTTGAC AGGCTTACAGTCGGACCAAAGCGTGTTGCAATAGAGTTGGGTCATCAGGG GCAATGTCGTCGAGCCACAACTGAAGTAGGGACTGCATTGACTTCTCATC TGCTAAGGCAACTTGAAAATGCTAATGTGGAATCCTGTGACCGTATATCA ATCAATCCTCGTGGCCAGACGTTGTCTCAAGTTGTATTTAATAGACTTGA TGATGAGTCGTATATTTTCGAGCGTCGGCCTCAACTACTTCACCGCCTTC AGGTTTTACTTGGAGGGAGAGCTGCAGAAGAGATAATTTTTGGCCGGGAT ACATCAAAGGCATCAGTTAACTACCTTGCTGATGCATCATGGCTTGCTCG AAAGATTATAACAATTTGGAATTTGGAAAATCCATTGGTAATACACGGAG AACCTCCTCCTTGGAGAAAGAAAGTCAAATTTGTGGGGCCTCGTCTTGAC TTTGAAGGTTCATTATATGATGATTACGACCTGATTGAGCCACCAATCAA CTTCAACTTGGATGATGAAGTTGCGCAAAGAACAGAACAATTGATGCGTG ACATGTATGATAAGACTGTTGCTTTATTGAGGGAGCATAATGCCGCTTTA CTAAAAACTGTTAAGAATTCTTTGATAGGATGGACAGGAGCAAGGTTGGC TCAGTTACTCCAAGAGGCTGCTCTTGTGGCAGTGCGAAAAAATCACAATG CTATTATGCAGCCAGACCTTGATGAAGCAGTTGACAGGCTTACAGTCGGA CCAAAGCGTGTTGCAATAGAGTTGGGTCATCAGGGGCAATGTCGTCGAGC CACAACTGAAGTAGGGACTGCATTGACTTCTCATCTGCTAAGGCAACTTG AAAATGCTAATGTGGAATCCTGTGACCGTATATCAATCAATCCTCGTGGC CAGACGTTGTCTCAAGTTGTATTTAATAGACTTGATGATGAGTCGTATAT TTTCGAGCGTCGGCCTCAACTACTTCACCGCCTTCAGGTTTTACTTGGAG GGAGAGCTGCAGAAGAGATAATTTTTGGCCGGGATACATCAAAGGCATCA GTTAACTACCTTGCTGATGCATCATGGCTTGCTCGAAAGATTATAACAAT TTGGAATTTGGAAAATCCATTGGTAATACACGGAGAACCTCCTCCTTGGA GAAAGAAAGTCAAATTTGTGGGGCCTCGTCTTGACTTTGAAGGTTCATTA TATGATGATTACGACCTGATTGAGCCACCAATCAACTTCAACTTGGATGA TGAAGTTGCGCAAAGAACAGAACAATTGATGCGTGACATGTATGATAAGA CTGTTGCTTTATTGAGGGAGCATAATGCCGCTTTACTAAAAACTGTTAAG GTTCTTTTGAATCAAAAGGAGATTACTGGGGAAGAAATTAACTTCATCAT AAAAAATTATCCTCCACACACACCAACAAGTCTTATATTGGAGGAGAGAG ATCCAGGGGGTCTTCCATTTAGGCAAAGTCAAGAAGAGGAGAGTGAAGTG GAATATAGTATGTTGCCTCAATAA
Pep: 
>DCAR_029910pep MLYSLTTRHFFPYTPPHLPTKTPLNPSLKPFNFTFTCSTTRRRSYVVRAA AESNDKQNDDFVTRVLKQNPSQVEPKFLIGDKLYTLKEKEGLVSNSDDGL FGFLSKRKREEEKVSSRNESGDVFLKDLLREYRGKLYVPEQVFGQNVSQE EEFKRNLDVLPRITFEDFLKAMRSDQVKVLSFVEDNGASWFRDFVVELKE IPGDKNLQRTKWTMKLYKDQAKSVLEEYTGTRYEIEKNQLVSSVGKLPEY PHPVASSISSRIVVELGMLTAVMAAAAAVVGGFLASAVLAVTSFVFVTAL YVIWPIAKPLLKLLYGLVSGMIEIVGEKDIWQGIEFSQSKPQARVDGSTG VTFSDVAGIEEAVEELQELVRYLKNPELFDKMGIKAPHGVLLEGPPGCGK TLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVI FIDEIDALATRRQGTFTDSKDQLYNAATQERETTLNQLLIELDGFDTGKG VIFLGATNRKDLLDPALLRPGRFDRKIKISAPNAKGRLEILKVHARKVKL SKSLDLSTYAQNLPGWTGARLAQLLQEAALVAVRKNHNAIMQPDLDEAVD RLTVGPKRVAIELGHQGQCRRATTEVGTALTSHLLRQLENANVESCDRIS INPRGQTLSQVVFNRLDDESYIFERRPQLLHRLQVLLGGRAAEEIIFGRD TSKASVNYLADASWLARKIITIWNLENPLVIHGEPPPWRKKVKFVGPRLD FEGSLYDDYDLIEPPINFNLDDEVAQRTEQLMRDMYDKTVALLREHNAAL LKTVKNSLIGWTGARLAQLLQEAALVAVRKNHNAIMQPDLDEAVDRLTVG PKRVAIELGHQGQCRRATTEVGTALTSHLLRQLENANVESCDRISINPRG QTLSQVVFNRLDDESYIFERRPQLLHRLQVLLGGRAAEEIIFGRDTSKAS VNYLADASWLARKIITIWNLENPLVIHGEPPPWRKKVKFVGPRLDFEGSL YDDYDLIEPPINFNLDDEVAQRTEQLMRDMYDKTVALLREHNAALLKTVK VLLNQKEITGEEINFIIKNYPPHTPTSLILEERDPGGLPFRQSQEEESEV EYSMLPQ*