Resource Type:
Gene
Organism:
Name:
DCAR_003447
Identifier:
DCAR_003447.gene
Locus Tag:
DCAR_003447
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_003447, is a part of gene, DCAR_003447. |
| The genetic_marker, MK010745 1_39012968, is located in gene, DCAR_003447. |
| The genetic_marker, MK006563 K4007, is located in gene, DCAR_003447. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_003447 | DCAR_003447.mRNA | mRNA | DCARv2_Chr1:39011651..39024673 |
Sequence:
CACGTGCATTTTTACAGAACGTTACAGACACAAAAAAAACAGAGCTTCCT
TTAGATACATGATGCATCATCGTACACGCAATCTATTCCAAAACAATTGT
TCTCAATACTCCAGAAAATAATATCATCATAGGCACTATCGTCTCGGCCA
TTGCAACTTCCGCCGCGTCTCCGCCGTGTCGTCCAGGTAATCCCCCACTT
TCCGGCGACCTCATATCCTCATAATCATATAACTACTTGTATCAATCAAA
CATTTGTATGTTAAATTTTAGTAACTTATCTGATGAAATTAATGGTTAGA
GATAAGGGATTAGTTTTAAAGTTGTAATTGAGATTAAGTTTGAGTTTATT
AAATTCAATATATGTTTATATGCTCTTAATATTATTTTGTTGAAATTTGG
GGGAAAGTTTGTTCTATTTATTTATGTGTTTATGTTTTATTTGAGCTCGT
GTGAAGTTGAATTTTAACTGTCATCAGATCACTCGTACAATCGGAATTAC
AAATGTGATGAGAAATTATGGAAGGTCTCTTATATATCAAGTCCAATCAC
CAATGTGTTGTGAGGATGCAAACCACCATGATTTCTAATACTGGGCTAAA
GATAGTGACAAACTTTAATAGGACTGTGAATTTATGTATAAATTTATTAA
GTTTTAATCTGAAAAAAAAGACTTGATGCTTTGCACCTTCGTAATATGTA
TTCATATCATCATTATAGTAATCATCTTCTCCCATATTCATGTGATGCTT
GGTAAACTAAAGTACCAGATGGATCAGAAGACTGCCCTTTTTGATTTAGT
GGACACTGAAACCTTATGTCTGGGATAGTAGTTGTTCTTGACTGATAATA
TGGCATGGTAGATGGATTACATAATGCCTTTAATTTGGGACAAGAGGGGA
AGTGACAAGCTCAAAAATGAAATCGTAGCGTGAGATGAATAGATTTAATC
ATCTACAATAGAGGAATGAGAAAGGTCAAAATTTGTTTTTCTTTTAATCC
ACCCACAAATTAATATTATGAGTACACCAGGAATTAACTTAAGAGCTAAA
AGAATCTACAGTTGAGCATACAGAAAAACATCATCATACACAACAAATCA
GATAAAGACGCAAACATTAAACAGAAAATGTAATACAAGTCATGTGTGTG
GACCGTAGAGTGTGGATTATAATCGATTAGTTGACATGTTGGTAGAGTAA
AAAAGCTAGATAGCACCCACGTGCTCAAGTTTCAGATCATTTTAATTTTA
TCTTTTCTGAACTCCAAATTTGTGTATCGTATCATGTTATTTGGCTATAT
GTGAGTATTAAAATTCGGACCCAAACCAAATATGACCTAGTATCATACTT
TTCCTTGTTCTAACCGGATAGTTTGAGATCTATCGGATACGAGCCAAGTA
TGATTCACATTAAGTATCATATGTGTATAGAATACTTAAATAACCAAGTA
ACCTAAAAATAGATGTGATATTATATAAATATATTAATTACAAAACAAAA
TTCTGAATAGATAGGTATTGATTATGTTAGAACAATGATATATTGCTAAC
TGATTTATTATTTGAGTAGATGAATAGTGTTAACAGAAAGTTCAATGAGC
TATATGTTAGAATTATAATGGTCCAAAAAAATATGGACCGTGGGCCATAT
TCTTGTAGGATCATTTTGAAAGATATTGAATGAGGCCTAATATGAGTTGG
TAATGAGTGCTCGTAACTGGGATCATATTATATTCAGTGCGCCGAATTTG
TATCATTTGTAAAATGAAACTGCTACGTATTTTATATTTTTGAGCCGAAT
ATGAACCGGATTGAGGGATAGTTTGGATAAATTTACAACCCTGCTTGTTG
GTTGCTTGATCTCTAAATTATTTAAGAATCATCGTATCGTCTTTATTTGA
AAATCACTGACACTTATTTACAAGTCTTGTTCAAATGATTTTATACTACT
TCTTTTAAGGACAATTTTTAATACTCCCTCCGTTTCAATTTACATGTCCA
CTTTTAAAATCTTTTTTTGTTTCAAATTGCTTGTCCACTTCAACTTTCAA
TGCAAAATCATATTTCCAAAGTCAATTCTACTCCACATATCTCTTATTTA
TATTTCCTAGATCAATCACACTCCACATATTTTGATCATTTAATGCAATT
AATTTGTAAACATCCACTTTTCTTAAACTATGTGATTTTTCTAAAGTGGA
CATTTAATTTGAAACGGAGGGAGTACATAACTTTCAATGTTTTGGCTTGC
TAATATTTCTATGTTCTTTTTTACAGGAGGTTGCAGGGGTTAGAGGTTGT
CAGATATGTGCATTGCTTTTACATTGAAAGCGGTTCACAAGACAAATAAA
TAATTTGCTTTTGCATCAGTTACTTATTCAGTTTTATTAACATTACCACG
GCATACGTTTTTGAGAATTTTATTGGAACTTAGTTTGTTTGATCATGGGC
ACTGGTTGCACTTTACAACTGTCCCCACAACTGGGAATGTATAGAAACCA
TCCATCCAGTAGAGAATTTCAGGTGCCTAATTATTTGTGTAAGACCAGTC
TAGCAGTTTTTAATTAGCTTTATCTAACACAAGGATGTTCTCTTAGTAGC
AGAGTTGGGCGGCAAGTGGCAGAGTAAAATTATTAGGTGCTGTATCATCA
ATTTCCTTGGTATGCATCTTGTCGTTCCATCAAGTGTCTGTTGGTGTTAC
AATGTCTTATACTCTTATCTGCCTTCTCTTAATGCTTGTACAACAGTGAC
AATATTAAGAAACCTGATTTAATGCCTGCAGGTCCTATTCTGTTAATAGC
TGAAAGTTTTTTTTTTTTTTTTTTTTGAAAACAGTTAATAGCTGAAAGTT
TATGTTACATATTTTGTGTGTGACGTGTCTATATAACATTTCCTTCGATA
TTTTTAAGTTTGATATATACATTCTGTCTCAGGTCATTCAATCCTGTATG
CCTGCGTGTCAGATCTATCATATCTGTTGAATTTTTCGAATTTCTAGTTC
ATTATTAAAACTTCCATTCACATGACTGATAGTAATTTACTTGTGAGGAG
TTCCCATGTTGTGTTAAATTTCATAATTTCATCAGTCTCATAATCACCCT
CGTTCTTCCTCTTATTTGGGAGGTTTTATCAAAAAGCCTGCTAGTAGTCA
CTACTACTTAATCAGTCTGGTCCATGCCAGGGTTGTAAAACTAGAGAAGA
TCTATTGTTGTGTGTGTGGCTTTTTATTAATCAGCTATCAGTTTTTTCAT
ATTTCTTTTGTCACATGATTCCTTTTTTATTAATTATGTCGCTATATAAT
TTGTTTCTTTTGGCCAAGCTCATAAGTTATATGCGGAAAAACAGAATGTT
TTGTTGTTGAACTCTCATTAACTTTTAGCAATCATAACTTGTTGCACTTC
ATTCCTGATTTAGTGATTCTTAATATTACTAAGTAATTCAAGTGTTACGT
TTTGTTGTTGAAATGTCATGAGATTTTAACAATTGTAAGTCATAGATCTC
CGTCCCTAATTTTTGAGTTTCTTGTTTGATTAAGCCAAGCCTGTCATTTT
TTTAGCTGTTACACTTCCTGCTTAAATCATATTTTAGTCAAGCGTAAGCT
TGCAAGGAGCGTGGGCATATGTTAATTATATTCATAGTTGACCTTAGTTT
TTTTGTTTACAATTTCAGCGACAGGATTCTTTGAGTATTTGTCTTTCAGA
TAGACTGCACAAACGAGTACATGCTGCTCCATATAAGCGCAATCACTTCA
CGTGTCATTCCTTGTTAAATTTAGGTCATTCTCTCCACATCTCTAGTTTA
AAGAACACAGCTGCAGAATTGACGAGGTAATCCATTTTTCGTGAATTAGG
ATTTAGGGTGCTTCTACTTTTGCAGGTTACTATACTTACTCCTATTCCCC
TTCATAGATGTTGTACAACAATGTGCCCTTGATGTGCATTTTTTTATAGA
TGTTGTACAACAATGTGCCCTTGATGTGCATTTTTTTATTAACCTTTATA
TGCTTTTACACTAGTTGATACTTGTCATTATTATTGTTTGGATAGGGGTA
GGCAGACAAATAGTAAAATGGTTGCATTCCTGACTCAGTTTGGGATCTTA
CTAAATTTGCAGGATATAGAATTACTTTCTGTCCCCCTTTCATTGTTGTC
CAGTTTACGATCTTATATTCAAACTAATATAATGTTATGCAGGTCTTGCG
GTGCTTTGCAAGGTAAACATGTTGTCTTTAAGTTGGTCCCGGCAATTACA
ATCTTACTTTTTGCTGTATGGGGCCTGGGGCCAGTAATGCGTCTTAGCAG
AAACATATTCCTTCATGTATGTGCTCTGTTCTGTTTCCTTTTTTTTTTTG
GCAGAATATTATTCGTAATTATTTATTTAATCTCAGACATCCCTTTGGGT
CATTATATCTTACACTTCATTATAATGTAGAAAAGTGATAAAAGTTGGAA
CAAGAGTGGTACCAATTATGTAGTGACGTCTTATCTCCAGCCTATTCTGC
TTTGGACTGGAGCAACACTCATCTGCAGGTATTGACCGACTTAGACTCTG
AATACGAAAAATATATAGTTGTTTTTTGTGATTATATGTATGTCTCAAAT
AATTATTATGCACTTACGGAACTTTATTTCTAATAGAGCATTGGATCCTG
TAGTCTTACCATCAGAGGCTAGTGAACTTGTTAAGCAACGTCTTCTGAAT
TTTGTGAGGTCCCTGTCAACTGTGCTAGCTTTTGCATATTGTATTTCAAG
GTGAGAGCACTGTCCGTTCCTTGGCCATATTATAATTTCTGGATGAAGTC
ATCAGTCAACTCTAATATGATAGACCAAAATACTAATACGCTGTTCCGTA
ATAAAAATTTCTTTTTGTTTTTCAATTTTTTTCCCACTGTCTTTCTAAAA
TTTGCATTGAATCATTGTCATATTTCAATGTTTTTCCCGTAATTCCAGAT
TTTTATTCTTCCAATTGAGTATTTGCGTACAATTCTGCTGAATTTCGAGC
TATATACTACTTCCACTTGGGTATATGTGTTTAATTTTATTGTTTAAATT
ATGTACTGCAGTGTCATTCAACAAACACAGAAGTACTTTATGGAGACAAG
CGAGCCCGCTGATTCAAGAAATGTATGTTTTATGAATCAAATTTTTTGCT
CTTTTCTTATGTTATTTTTAGTAATATGCTCTATTATTAAGAATAAAAGA
ATAATTCAGGTCACCAGTGGCTTTCAGGTGTTGCTTCTATTGTAACAGCC
CGATTTTTCGGACTATTATCATTCTATCAAATAATAAAAATCCAAATTTA
ATTCCATAAATAATATAAAGAAAGTCATCAATCCCTCAAAAATCCCAATT
CCAAAATTGAACATAAAACTAATATCGTTCATGGAGACGCAGCTCCTAAA
ATGACTGAAAATAAAATATAATCATTATTATTAGACTCTAGCCCACTCCA
ATCAAATCCAACTCCAAAGCCGTGCCAATAACATTAACCTGAAATTTGTA
AGTCGTGAGCTACACAGCACAGTAAGAAAACCAATTCGACCAACAGACCA
AAAACTTTTAAATCCTGCTATAGTTCACAATTTCATAACCAAGAATCATA
AACCATTATTTCATAAAGTAAATTCCACAGTTCTCTAGGCCACTAATACC
CGGGGGCACGGTATCATAAGTTCATAGGTGTCAATAATGCGCCCCTTACT
AAGGTATCATAAATGATGCCAAGCACGCCCTAGTAAGGTATCATAATCTA
GTTCCGGAACTATACGCAATTACTAACAGGTTCATAATTCATAGCTAGTT
GGGAATTCCTTATATCTAAAATATTTTATCAATCTCAAACTTTCACAACA
AAGCAGTATAAAGCATTTTAAACAATTCTGAAAGTGCGAAAAGTAATCTT
ACCTTAGCAAAACAATCACTTATAACTCGCAGCACTGAACCCTACACAAA
TTTTTAATCATAAAAATAAAGGATTATCAGTTTACTAGACAATAAAATTA
CAATCTTTTTAACCCTATGATTTCTAACAGTACACACTAGCATATATTTT
AACCCTGCCCAACTGGCCAACACTGATACTGATATTTATACAATCTGACA
CTGCCCAAGTGACCAAACCTGATATCCAAGGAACATGAGTAAACTATTAC
TTTTAAATAAATTAAGAACTAATAAAAATCTCTTTTCTTTTGTTTCCAGA
AAACATCTTATATAAAAATATTTTAATGTACACAAAATCAATTAAATGAA
TAAAAGTAGTTAAATAATTTAATTGTTTCCAAATCAAAATATATAATAAT
TAATACATGGTAAATAAATATTAAAAACCTTTGCCAAATACAAATATCAC
TGGTAACACATTTTTACACATACACACATATTACTGATGCATAAAATACA
CACATATATAATTCTTAAAGTCATATAAAAAATATAATAAATTAAATATA
ATAAAATATAGATTTGAAGAAAACCTTTTTCCTGTTACAAAACACTTATT
TTCAAAAATATAAGTAACCTTCATATATATATAACGGTATGAGATACAGT
ATACATTAAGAATATAACCAAATAGAGAATAATCTTCATTTACATAACAA
TATCAGTACACAATCAGAATAACAGAGAGAATAAAACCGTACTGTACATA
ACCTATTTTTTACATATCAGTATCACTGCACAATCAGAGAGAATGACAAG
AGGGTTTCAAAACATACTGTACATAACCTATTTTTTATATCACAGCTTCA
TCAGTATAGAAATATAAAAAAAAACACAACGACATTAGAGAATAACAGTA
GGGTTAAAAGAAGCGTACCTTTTGTGGTTAAAACCTTCACAAGGCTACGG
TATATATAAGCTATAACCTATCTGTTACGTAAAAGATATCTTAATTAACA
GTACTAATCATAATAAGGATAAACCTTACGTATTAAAAATAGGACACGGA
TGCTTACTCTTTTTAAAATTAAAACCACATAATATTTATAAAACCTTATA
AACCAAACATTAATAAGATCTTATTAACAACATACTTTTAAATCCTACAC
AATAAAATACTAATAATATATTTCATAATAAAATAAAATCTTGCAATTTA
AAATATTAGTAAAAGTTTGCACAATGAAATATTTGCATCATAAAATACTA
ATAAAATATTGCACAACAAATGCTTTTTTCAAAAATTTATACAATACATA
TATATATACATAACAATTAAATATAAAAATTACGAATATTACATTTATTT
TCCCGATATACCGGATTAAGAAGAAAGAATTTATGATAGAGCATGTGAGC
TAATCCTAATCACTGTATCAGCATGGAAACGATACCAAATTGAAGCTCAA
AAGAAGTGAACACCTAGAATGCCTCAATTTAATAATAAGTTGGGTGTAGG
GATTCATAAGGAAGTAATTAAACAAGCCGACTGGCCATTTGTGATGGAAA
TAAACGTATTCATGAACTATTCTATACTCGTAAAATTTAGTACTTTTCTT
TATAGCTTATATTGTATAAGCCTTATTCTCATTCATCTAGTTGCCTAACA
ACAAATTTCAAAGGATCTAGATTCTAGAGGGAAGAAGTTCTGTTTCCACA
GCATTAAACAATATGATCGATAGCTCTAGTAATAATGCAGGTCAATAGCT
CTCGCAAACTGAAGTCATCATTCAATAACTATACTATCTCGCTTAAATGC
ATAATCTACAAACTTCACAAAATTTAAATCCTGCTTAATGTACTGCAAAG
ATAAACATTACTTGCATCATTGCAGGTGGGATTTCAATTTGCTGGCAAAG
CTGTTTATACTGCAGTTTGGGTGGCTGCTGTATCATTGTTCATGGAGTTG
CTAGGTTTTTCTACCCAGAAATGGCTCACTGCCGGAGGTCTTGGAACAGT
CCTCCTGACACTTGCGGGTCGTGAGGTGGCTTTTTAAATCTATTCCTTCC
GTTTTCAGGAGTTCAATTTTTTATTTTTTATTTTCAATTTGTGTATGTTA
TTTTTAGTATTATCCCCTTCATCTTCCACTGTGCATCCTCCTTTTCTTCT
TTTGGCATAATACAACTATTATTCATTATTTCAGATTTTTACAAATTTCC
TTTCGAGTGTAATGATTCAAGCAACCCGCCCTTTTATTGTGAGTGAGTGG
ATTAAAACAAAGATTGAAGGCTATGAAGTTTCTGGTACTGTTGAGGTATG
TAGAGTAATTCTTGTTATATGGTAGTTATGGTATGACTTATACTAATTCT
CATCACTGAATTTCTTATGCATGTGTTTTTTTTTCAATGGTATAGAGAAA
GTTGCGCATGAAAACCCTAGTACAAATGAAAGACAGTTGGATCCACTACC
TAAATGGGGTTTCCTTGTATTTGTTATACTAGCAAATATCCCGTGTTGTA
CTATAGTTGATATTTTATATTTCATTGATATATTAATATATAAAAGCTAA
TAGATTTTGATAACCAGTTCTTTAGTTCTAATAATTAATTAATAATATAA
ATTCTTGGAGTCCGAAAAATTGTAAGTGTTCTTAAAGGAACTTTAGTAGA
TATGCGATACATCAAATTCTAGTAGTTGTATAATTATGGACTTCTTAAAG
TAGTAGAATAGGTGTATTAATATAAAAGATAAATAAATAAATTATGATAG
CTAAATATTGGTACTTTGGTACCTCTTGTGTTCCACTGAAATAGGATTTC
GCTTATTAATAAAAAGTATAGATATATTTGCTAACTAATATATAAACCTA
TATATATAAGTATACAGGGAACTTTTGGATATCGAGATTCTTTGGCTCTA
ATATTCCAATGATATTAATAAAATATTAAATCAAGTATAATCAAGGAAAT
GAGGAATCTCTTGACAAAAAAAAAATGAGGATCTTCTGCTTTAGTTCTTA
AGTATAACATTTTTTTTCCACAAAATACATGGTCGCAAAAGTTACAAAGA
TCAATTTGATTTAGTCAAAATATATTACTATGCTAAGTATTTAAATCAAT
TTGGAAAGGAATAAAAAGATAAATGAGTATCGTAGACTCGTAGTTATAAA
AATTAAAAACTTATGTTTTTTCTGGATAAGAAATTTATGTAATGTCCTTT
GAGCTAAGAAGTTATTTACTAAGCTCCAAAATATTTACAAAATATGAAGG
TGTAACCAGAAGCATAAGATCGCCATAATTAAGTAGTTAACCGAGGAACC
CTAGTTGGATCATCTTTGATTCAACACTCTCCGAAATCATAAGAGTGGGC
AAACAAACAATATAAAGCACCAACAACACGGAAATATGTTTAAACTAGGG
GTTAGAGGATTAGAACTAGAGACCACTCCCCAAACCCAGCTCTAATACAA
TCATATATAATAATGTATAGCCAAAAGGTAAGCTGATTTAAAAATCAAAC
ATTGAAAAAGGGATTGCATATGGAATACACACACACACACACACACAAAA
GGAGACTGCAGAGATTGTTCTCTTCTGATAATTTGTAAAAATACTTTATT
TGACCAAGATATATGAATATAAATAATTAGATTATGCCACAATTAAGTTA
TCAATAGACTGCACATTCAGCAAACAGGTGTTATGCTTATATTTGAAGTT
TCCTTGCTCGAGTGTTTTGTAACATGGACCAAATTGTGTCATGCAGCATG
TGGGGTGGTGGTCACCAACTATAGTACGAGGAGACGACCGTGAAGCTATT
CACATCCCGAATCACAAGTTCACGGTAAATGTTGTTAGAAATATCACACA
AAAATCTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTGGACG
TCAACAAGATTAATGTTAGTAACCTCTGAACTCATGTCTGCACTATTTAT
CTTTGTTCCTGCTATATCAAACCCTCTTAATCATGCAGAATATTGTAGCT
GATATGCGGAAAGTGTTGGCGAAGAATCCTCAAGTAGAACAACAGAAGTT
GCACAGAAGAGTGTTTTTAGAGAATGTTAATCCTGAAAATCAAGCACTTA
TGGTTTGTCTAAAATCTACTTTTCATCTATCGACTGATTAACTATGAATA
TATGTCTATTTTCGTGCCTAACTAACAGGAGCATTTTTAACTAAATGTTT
TTCCCAGACATGATGGTTTATCTTTAGCATGAAAGATTCTTCAAAGAGAA
ACAACTTTATTGTTGTGGAAAGAATGTTATATATTTTTTAAATAAGAAGA
AAATACATTTAGTTCGTGTTTAAATCAAGAACTTTGTTTGGTTAGTTTTT
GATATATAAGTATATAACTAGAATTTTACAATTAATTATTTTCATATAAG
AAAAATTTATCTATTTATATAATAAATAAAATAAGTTAAATAATTTTATA
AAGTAAAGAAAAATAAATGTGGATTTCAAATTAAATAATAATGAGACTTT
TAAGTTAAATAAGTATTAAGATGAGTTAATATATTAATATATTATCACTA
GATTTTTTGTTTAAAAAAAATAGCACAACGAGAATTAAGAAAAAACATCA
CATAACATTAAATTAATATATATCATAACATAAACAAATGGCCAATAAAA
AATGATATAGAGGTACATATATAATATATACATAATAAAAATAGAGTGTA
TATATAATAATTACTCCCTCCGTCCCACCAGGTTCTTTACGTTACTTTTT
GGCACGCACTTTAAGGATCCTATAAAGTATACTTACATTATATATTTTAT
TTTTTCTAAAAATCCTAAAAAAAAGTTTGACGTTTAAACTTTTATTCAAA
AATAGAAAAAATTAAAAAAATTATTGAACTATACTTTATAAGAGCCTCAA
AATGCGTGCAAACAATGAACGTAAACATCTTGGTGGGACGGAGGGAGTAT
TATTTTTTGAAGGAGAGAAGATAATTTAATAAATAACAGCCATACGGCAT
ATACAAGAATGATCGAGTCAAACAAACATAGAATAAATTAACACTCTTGT
CTTCATACACAAGATGAGATAAATAAACGATGTTGAAATTGATGATGGTA
TATTTATAAATCCTTGCTCTGTGTTCACCATCTTTTCCAAAAAATCCGTT
TGAGCTATCAACCATACATGCAATTCCCGGAAGGCTTTTATCGACAAATC
CAAACCAACTCTCACAAAAGGAGAGAAAAATCACACTCTCACTAGGGAGA
GAGATCAAACTATAATTATAGCACACGAGAGAAAATCTAAATGCAAACTA
AAACAATTAGATCTGTACCACAAACCTATACCAGGAGATAATCGATACAC
TCACAAATCCAAAAAACCCTCTGGAAGCGAGTAATCGAAAGTTTCGATGA
TATATATCTAAGAAAACTTACCCAAAGAGGGAGATTTATGAAATAAATCA
ATGAAACAAGCAAGAACAACCAAAGAACAAGCAATTAAACGAAAGGATCT
GGGGCTTTCCACCGGTAACCGGTGGAAGCCCCGTCGGACCGGTAACCGGT
GGAAGCCCCGTCGGAATGAGAAAAGAGGGAGGCGGCTAGAGAGAAAAGGA
AAAGAAGGGTAGGGTTTTTTCCCTATTATATATAGTGCATGTATAATAAT
TAAAATTGAATATAAATTTGTATATATATGTAGACATACATATATGTGTA
TACATGCATATTCATATGTGTGTGTGTGTCTCTGTGTGTGTGTGTATCCT
TTAGATTATAAATCCTGTTGCCTTTTTTACACCCCTTACCCCAAGACTTG
ATGTTTAATTACATGAAATGCCATTCCAACTTGCTGCATGATTTGTTGAT
TCCCACCATGCCACATGCAATTTTCTCGATATTCGCGTACCCGCATTTCC
TTTATTTCACTAAAATAGTATAGATACAGTAGCAATCCGAGCATGGTCAA
GTCCAATTTTTACGCCTTCCATCTCTTCCTCACTATTTCAAGAAACAAAC
AAAACTGCAGCTTTGTTTTGTCACCAAGTATCATCCCTAAACTCTGAATT
TCTGCCTGATTTCAATATCAAAATTCAAATTCACATCACGTGATTGCTTT
TTATCATGTTATATTTTGAATTTGAATTCAAACTCATTCAGATATCATCT
CTTTTCTCTCTAGCCTCACACCGCCGTTTGCTCCATGTAAGTCCCTTTCT
TTCTCCCCCTTCTTGAATCTCTCTCTCTTCCTCCCTTAGTCTGTCTATCT
CTCTCTCCCCCGGCTGTCTCTATATCTCTCTTTCTGTTTCTTCATTTCTG
TCCGACTCTCTCTCTCCCCACTTCCCCTGTCCCTCTTTTTTAATATATAG
TAATATATATGTATTTGACCATTGAGGCAGGTAAATGACTCCGGCACATA
TATGTTTCTTTGTTGCAGATATTTGAGTTTTAATGTTGCAGCTTTTTTTT
TTTTTTGAGTTTACATCCTCTCGTATATTTATAGATGAACCGGAGGTATT
GTTTGTTTGGAATCTGGACCTAAATATTATGAAAAGTACAACAAGTGAAT
ATCTTGAGTTACCATAATGTGATATCTGTTTTTATACTATAAAAATTTAT
TATTTTCAGAAAATTTTGAAAATATAAAATTAGAGGACACCTTATAAAGA
AAAATATGAAAAAAAGGTGAACATCGAAGTGGATATTTAATATGTTTATA
ATAAAATAGAATCTTATTTTCAAATTTTATATTTAATTTAATAAGAAAAT
TTATGATTTTTTACTGCCCATGCAAAGCGGGCACCATTATATTATAATTT
ATAAATTTATTTTTTAAATTTTATATAATATATCACTGGTTTGATATATT
ATAAACAAAATAAAATAAGATAGAAATTATTTAAATAAAAGATGAAGAAA
AACGTGGCGAGATAATTTGTAAAAATTATTATTATAAATGGAATATGAAT
TTTTTTGAAAATTAACGCCCATGCATAGCGGGCAAAATTATAGTATATAT
ATATATATGCAAACATTTCATGGAGGTCCTTCTTATATGAAGTTTTGTAG
TACACCATTATAAATCATTAATTTTATTAGAAATTCTATTATAAAATACA
TATAAAATGTGATTCCAATCTATAATATTATGACATATATGTGTTACAAA
TAATTTAACATTTAAAATTTGAACGAAAAAAAGTTGATTTTTAAAACTTG
TTCTACAGTAGAATATTTTAGATAATTATTATTCAGTTGTATAATCATGT
TGGAATATTGCATATTTTCAATGGTGTTTGAAATAAAAAATTGTACAATT
CGTTTTTGATTTACTTATTAAAATTTGCAATTATATTTCTTGAACAATAT
AAAGTTATATGTATTATGTATATATCTATAGTGATGTACTACAGAACTCC
ACATAAGAGGATATGCTATGGAGTGCTAGTAGTGTTCTAAAAACCCCATT
ACACTCCTATTTGACTAAATATCCTCTGTTTATCTAAAAATTTTCCAATA
AATCCCTGATAAATACTTAATTCAACCGATAAGTTCCAATTTTCGATTTC
TACAACCATGGCTGCTACCATATATGTATGTATGTATGTATGTGTAGTAC
TCCGGTAGAAACCACTAAATAGAAACTAAAATAGAAACCAATATTATCAA
TAGAATGGGAAGGTTTGTGGGTCAAGAGACTCAAGAATGGACCACAAGGT
GGACCAGAGTGGGGCCAAAAGATGGCTCTTTAGCCTGTATGGAGTCTGTT
TGGAGCCTTGGTAAGGTTTTAGTGGGGCCAGGGTGGATTGATTGGGGCCG
GGGTGGCTCCCTTGGGTATCATCTGTACGACTGCAGTAAGAATCTACTTA
ATTAGTATCTCTTTCCATACATTCTCTGTACCCCTTACACGGTTCTTGCA
TCCGGATATGAGTTAGAATGATGCAAATCACACTCATCTGTTGCCAAAAA
CAAACCAAAGTCTCGAGGAGGAAAGCAAGTAAAAGGATTTATAATTACTA
TTGGCTAAATGTCAAATTTGTTGAATCAGCCATTTTTGTTGTATTTATAC
TTTTGGAAGATGATTCAATTTGAGCATCTCTTTAATTTCTTGAATTTGTG
ATATTATTTCCATTTCATGCTTTTATTATTCTACTACAGATCCTGATATC
CTGCTTTGTCAAGACATCACGTTTTGAAGAGTACCTATGTGTCAAGGTAA
TTTTATTTTTTCTCAAAGTTTCCTGTTTAATCTTTTTTTTTCTGTAAGCA
CTTTTTAGTCCAAAATCTGGAAACTTTCAATTTTTTTTTGGGCCTGTATG
GTTACAATAGATTAGCCACCAGTTCAATTAAAATCATTGAATAAAAGAAA
TAAACAATGAAATATTACAAGTTCATGTTGACACTGAAGACTAAACTATA
CTTCTTTACTTAAATTCATACTTTTCTCATTATTATTGATCGCTTTAGGC
ATTCTTGCTTGCACTAACATTGACTTTCTGTTTCTAAAATTACAAGTGTT
AGATCAATTTATGTTTATGTTTTCATCTGCGGCCATGAGCTTTTTATCTA
TTCTTGAATTAATAAATGCGTTTTCATAAAATTGGAGTGTGTTTCATAGG
CGTCAACTATTTTGATTTTAAAAACAGGAAACTATACTCTTAGATCTCTT
AAGGGTTATTAGCCATCACCGGGCCCGGCTTGCTACTCCTATTCGTACAG
TTCAGAAGATGTATGGTGATGCTGATTTGGATAGCATGCCATTTGCTGAT
TCAGTCTTCACTCGTGGTAGAGCACCTACAAACCGTCCTTTACTTTTAAT
TGAGCCCTCAAACAAAGTCAATGGGGAAGGTAAAACAAAATCTCAAACTC
GCTCAGCACGCACTAATGGAGAGCAAGACAACAAAGCTGTTGCACGGACA
TCTGACAATCAAATAGATGTAAAGGGTGGACCATCTGATGCTAAAACCAA
AGAAAAATCATCCTCTGACTCCAAAGTAAAAGCAAATTCTAGTGCTGGAG
TTGTGCCTGATCCTGACAGCAAAAAGGACCAAAAATTCGAAGGAATGCCT
GTATATGACACCAAGCAGGGTGATAAAGTTGGCGATAAAGTCTTGTCAAA
ATCTACAGCCAAGGCAGTTTCTAAAATTGGAGAAATTTCAAGCTCCAATT
CAAATGCCCCTGTTTCCAAAAATGTTACAGAAAACAACTCAACCAAGAAG
CAACCTAAAAATGGAGAACTGAAAAGTGCTCCGCAGAACATTGTAGTGGA
GAATCCCTCGGCTGCTGTTCCAGAAACATCCAAGCGCAAAGCTAATTCAT
CCATCTCAAACTCAAAGCAAGCAGAGAGGTTAACAGCGGTAGATATACCT
GCATCAAGACCTGTATCGGAAGAAAATATAGTGTTGGGTGTTGCTTTGGA
CGGCTCAAAGCGAACCCTTCCTATAGAAGAAGGGATGCCTCCCTCTGCGA
CTTCGAAGGAAGTCAAAGAACTGGCTACATCCCGAAGTGGGAGTGCATCT
TCAACGGTTGACAAGGACAAGAAAGATAATCAAAATTCAGCGGGTGCAAC
ACCTGCTGATAAGTAAGATACTGCACAGTTATAAATTTAGTTCCTAGTTA
TGAAGACTGCATTACTCTTGCCGTTCACCTTGTATATGTTCCACTGCAGA
TCCTCCGTGATTATATTTTTGGGGGATTTTGCCTGCCTGGAGTTGAAACT
TATTTAGTTTATAAAAACAGGAACCAGATCTAAGGGGAGCTGTACATTCT
CTACAATTTACAATTTGCCAGGTTTACTTTTGGGATCCTTTCTGGAAACA
ACAGTTGGTCTTTAATAAGTAACTATACATGTATATTGAGAGTTGGCAAT
AAAGACTTTTATACAATTGATATTTGATCACTCCTATTTTGTTGGTGGTG
GCTTGTAGAATTACTTTCCATAGAAAAGATGCAGTCAAGTAACCAACAAG
ATTGTTATCCTGCTTTTGTTAATCGTATATAGTAGTGTTTGGTCTT
Sequence Length:
15896
Sequence Checksum:
f325cd0b0717e14af4ee224d6937db83
View location in JBrowse:
Cds:
>DCAR_003447cds ATGGGCACTGGTTGCACTTTACAACTGTCCCCACAACTGGGAATGTATAG AAACCATCCATCCAGTAGAGAATTTCAGAGTTGGGCGGCAAGTGGCAGAG TAAAATTATTAGGTGCTGTATCATCAATTTCCTTGCGACAGGATTCTTTG AGTATTTGTCTTTCAGATAGACTGCACAAACGAGTACATGCTGCTCCATA TAAGCGCAATCACTTCACGTGTCATTCCTTGTTAAATTTAGGTCATTCTC TCCACATCTCTAGTTTAAAGAACACAGCTGCAGAATTGACGAGGTCTTGC GGTGCTTTGCAAGGTAAACATGTTGTCTTTAAGTTGAGTGGTACCAATTA TGTAGTGACGTCTTATCTCCAGCCTATTCTGCTTTGGACTGGAGCAACAC TCATCTGCAGAGCATTGGATCCTGTAGTCTTACCATCAGAGGCTAGTGAA CTTGTTAAGCAACGTCTTCTGAATTTTGTGAGGTCCCTGTCAACTGTGCT AGCTTTTGCATATTGTATTTCAAGTGTCATTCAACAAACACAGAAGTACT TTATGGAGACAAGCGAGCCCGCTGATTCAAGAAATGTGGGATTTCAATTT GCTGGCAAAGCTGTTTATACTGCAGTTTGGGTGGCTGCTGTATCATTGTT CATGGAGTTGCTAGGTTTTTCTACCCAGAAATGGCTCACTGCCGGAGGTC TTGGAACAGTCCTCCTGACACTTGCGGGTCGTGAGATTTTTACAAATTTC CTTTCGAGTGTAATGATTCAAGCAACCCGCCCTTTTATTGTGAGTGAGTG GATTAAAACAAAGATTGAAGGCTATGAAGTTTCTGGTACTGTTGAGCATG TGGGGTGGTGGTCACCAACTATAGTACGAGGAGACGACCGTGAAGCTATT CACATCCCGAATCACAAGTTCACGGTAAATGTTGTTAGAAATATCACACA AAAATCTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTGGACG TCAACAAGATTAATAATATTGTAGCTGATATGCGGAAAGTGTTGGCGAAG AATCCTCAAGTAGAACAACAGAAGTTGCACAGAAGAGTGTTTTTAGAGAA TGTTAATCCTGAAAATCAAGCACTTATGATCCTGATATCCTGCTTTGTCA AGACATCACGTTTTGAAGAGTACCTATGTGTCAAGGAAACTATACTCTTA GATCTCTTAAGGGTTATTAGCCATCACCGGGCCCGGCTTGCTACTCCTAT TCGTACAGTTCAGAAGATGTATGGTGATGCTGATTTGGATAGCATGCCAT TTGCTGATTCAGTCTTCACTCGTGGTAGAGCACCTACAAACCGTCCTTTA CTTTTAATTGAGCCCTCAAACAAAGTCAATGGGGAAGGTAAAACAAAATC TCAAACTCGCTCAGCACGCACTAATGGAGAGCAAGACAACAAAGCTGTTG CACGGACATCTGACAATCAAATAGATGTAAAGGGTGGACCATCTGATGCT AAAACCAAAGAAAAATCATCCTCTGACTCCAAAGTAAAAGCAAATTCTAG TGCTGGAGTTGTGCCTGATCCTGACAGCAAAAAGGACCAAAAATTCGAAG GAATGCCTGTATATGACACCAAGCAGGGTGATAAAGTTGGCGATAAAGTC TTGTCAAAATCTACAGCCAAGGCAGTTTCTAAAATTGGAGAAATTTCAAG CTCCAATTCAAATGCCCCTGTTTCCAAAAATGTTACAGAAAACAACTCAA CCAAGAAGCAACCTAAAAATGGAGAACTGAAAAGTGCTCCGCAGAACATT GTAGTGGAGAATCCCTCGGCTGCTGTTCCAGAAACATCCAAGCGCAAAGC TAATTCATCCATCTCAAACTCAAAGCAAGCAGAGAGGTTAACAGCGGTAG ATATACCTGCATCAAGACCTGTATCGGAAGAAAATATAGTGTTGGGTGTT GCTTTGGACGGCTCAAAGCGAACCCTTCCTATAGAAGAAGGGATGCCTCC CTCTGCGACTTCGAAGGAAGTCAAAGAACTGGCTACATCCCGAAGTGGGA GTGCATCTTCAACGGTTGACAAGGACAAGAAAGATAATCAAAATTCAGCG GGTGCAACACCTGCTGATAAGTAA
Pep:
>DCAR_003447pep MGTGCTLQLSPQLGMYRNHPSSREFQSWAASGRVKLLGAVSSISLRQDSL SICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSC GALQGKHVVFKLSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASE LVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQF AGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNF LSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAI HIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAK NPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILL DLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPL LLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTSDNQIDVKGGPSDA KTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKV LSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNI VVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGV ALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSA GATPADK*