DCAR_030293

Resource Type: 
Gene
Name: 
DCAR_030293
Identifier: 
DCAR_030293.gene
Locus Tag: 
DCAR_030293
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 8 relationships.
Relationships
The mRNA, DCAR_030293, is a part of gene, DCAR_030293.
The genetic_marker, MK010858 9_22995328, is located in gene, DCAR_030293.
The genetic_marker, MK011973 9_22995353, is located in gene, DCAR_030293.
The genetic_marker, MK011974 9_22995364, is located in gene, DCAR_030293.
The genetic_marker, MK011492 9_23001470, is located in gene, DCAR_030293.
The genetic_marker, MK009936 9_23001489, is located in gene, DCAR_030293.
The genetic_marker, MK011493 9_23001620, is located in gene, DCAR_030293.
The genetic_marker, MK006012 K3456, is adjacent to gene, DCAR_030293.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_030293DCAR_030293.mRNAmRNADCARv2_Chr9:22990335..23002172
Sequence: 
ATGGCGTCGCGATTACGACGTCGTAATCTTTCATTCGAACTCCTCTCCAC
CGGACTAGACGACAACGACGATCACATCGCTCCCGAGAACAACAATTTCT
ACAGATCTACCTCCGATCCGCTGCAAGGCGATGATGCGGAGGTGTTGAAA
TCGGCGAAGCGGCGAAAAAAACGGCGCAATCGCGGCGGTAAGGGCAAAAA
GTCGTTGCTTGATTGCGTGATTGCGGAGGAGACGGTTGATTTTGGTAGCA
AGAGTTGTAGTAGTAGTTGTGTCACTCAGACTGTTGTGTTTGATGGTGTT
TCGGAGTCGAATGGCGGTGATCGGGCGGGTAGCTCGGAGTTTTTGGGGTT
GAAAAGCTTGAAAGGAGGTGGATTGAGGCAGAGGAATGTGAATTCTGGTG
ATGATATAGCGAATGGCGGTGAATTGGAGTGTGTAAGTTCGAAGGATGGA
GATTTGAGGCATAGGAATGTGAGTTGTGGAGGTGATAATGTGGCAAATGA
CGGTGAATTGGAGTGTGTGAGTTCGAAAGACGGAGAATTGAGGCAGCGGA
ATGTGAATCATGGCGGTAATGTGGTGAATGGCGGTGAACTTGAGCATGTG
AGTTTGAAAGACGGAGAATTGAGGCAGCGGAATGTGAATCGTGATGATGT
GGTGAATGGCGGTGTGAATAGTTCGGAGTATGTGAGCTTGAAAGGCGGAG
AATTGAGGCAGCGGAATGTGAATGGAGGTAAGGAGGAGGAGAGGATTGTG
TGTGAGGATGTAAAAGGTGGAGAATTGAGGCAACGAGGTAGTGTGAATGG
CAGTGATGAGGAAAAGGTGGTTGTGGAAGATGTTAAAGCAACTGAGAGGT
TTGGGGATAGTAATGTCAGGGAGGTTAACGGAAATGTTATGAGGAAATTG
GAGAGTGAGACATGGTTGGATTGGAAGAAACTTATGGCCGAAGATCCTAA
CTGTGAGTTATCTATTTAAGTTTTGTTAATGCTTTGTTTTCTTTTATTTT
TGGATGACTTTGGATCTATCTAAATCTAAATTAAGTGAGAATTAATTGGT
AGTAGGTTTTAATGTCGATGACCGTAATTTTGATTGCTTATTATATTATC
TTTTATCATGCATTGCGATTTTTTAATTGTGTGAATTTGGAACTGTTTTA
ATGTGAATGAGTCATAATTGTTTTGTATATATCGTATATGAATATTATGT
TATTTTAGTGGACTAATAGTCCCGACTTTACGTGATGTTAAGTCATAACA
TTTTACCGTAGACAAACTATATTGCAATATGTAGCAGACATGGATTATAC
TTGTCTAGTTCAGCAATTTGAAACCATAACAAAGCTACATAAGCTTAAAG
CTTAATTTATGAGGTACCGTAGCAGTACCATCATACTTGTCATTTGTTGG
ACTAGAAAACTATGTGGTATGTTATGGTTTGGCTTCATGGTGTCTGCATG
GGATTGTGGGTGTTGCGATTTCAAGTCCTAATTGTGGTGGTTCTTCTGAA
AAGCAATCCATAATCGAAGACTTTATACAAAGTAGCTAGTAAATTAAGTA
AAAAAAAATTCTGCTTATTGAATATAACATGCTAGTAACAAAAAAATAGC
CTTTTGTTTCTTTTAAAAAATATCAATGCATAATGTTGTACTAAAGGGGA
AAGAGATATAAGTCTTATACTACTCCCTGGTTTTGACAATTTCTCTATCT
TCAAGCACTTTGATAACTATTGTGTAGAACTTACTATGTATCCTAGGAGA
TCTCTAGAACTTTGTTAACTTGCTACAGTTGGACAAGTAATGGAAAGAAA
ACGAAGTCTAAATCTATGCAAATTTGCGCTTTGGCCTTTCAGTGTTTTCT
TCTGATGAATCAACATACATACTTATTTCCTTTGCTGACTTTTGAATTTG
ATTTTTTGTGTCAGACAATTTACCATTAGAGAAATCTCCATTAAAATATT
TTATTGAAGAAATGTACGATGGTAATTCGCTGCGGAATACAACAATTACT
GCCAATGAGAAAGATCGAGAAAGAGTATATGATACTATATTCCGCTTGCC
ATGGCGTTGTGAACTGGTACTTATCTTTATCATAAATTCATTCTTTTTTG
TAGTTTGTTGATGCGTGGCTCATTTACAGTTGTTAATGCACTTTACAAAT
GCATCTACATATATGTAAATTAATGGCTTTATTATCTAGCTGTCGCGACT
CGCAATAGTAATAATTGTTTTTTAGTTAGTTAAATTATAAATACATATAC
TGTATCTGCTTTTTCAACCTTCTATATTCACATCTTATTTGTTATCAGTG
CCAACTGGTGCAATTTGTATGTTTCTCCCTCTTAATGTACTAGCTCTACT
TTGGAGTCATGTGGTTGGAGCTCTCTTTCAATATTCCCCCAGATACTGGT
CATTCTTTTCATTTTATCATCATATCATATAGCGAGTCTATCATAGTTAT
TATATACTTGTAACATAGTATATTAACTATAGCTAGTTATCAGTGTATTA
GTTTTCGAGTTAGATTTGAAGATCACTTTTCTTTTGCAGCTCATAAATGT
TGGCTTTTTTGTTTGCTTGGATTCGTTTCTATCACTGGTAACTATCATGC
CAACAAGACTTCTCGTCACAACTTGGAAGCATCTACAAGCAAGGTTAGTT
CTCTCTCAAGTAATTTTTTTAAAACTTAAGCATAAGTATGTTTGGTCTGT
GAAGATTAATGATCAATGACTCTTAACTTACCCTTTTTTTACAAGGGATT
TTTTTTTCTCTTGTTTCGTTGCCTCTCTCTCTCACCCTCACTTTTACCAT
CTATTCCTGTTGTTTGCATATGTGGGCCAGGAAACATTAGGTGGCATTAA
GCATTAGTTAATATATTTAAGTCCCTAGCAATTGTTATGCAGGCAGTTCA
GGAGGCTTTCAGCAGCAGAGCTGTCGGATTTTGGTTGTTTTCTTGCGCTG
GTTTGTGGTGTCATTCTCTTACAACAAACAGGTTTTGTAAGGAAGTTTGG
CTTTTTACCCTTTTTTCCTTTTGCATTTGCTATATTATATCTAGGTGGAG
GTAACAAACAAGGTTCTTTTTTCGTCTTGGTTGGCTGTATACTAAATTTT
GCTATTTTGTTATTTTTTTCATTTTCAGATATTAGCCTGATATATCACAT
GATTCGTGGTCAAGGGACAATCAAACTTTATGTGGTGTACAATGTCCTAG
AGGTGAGGGAAATTAGTTTGTAATTGATGAAAAGTTCAAGTTTATTATAT
ATATTTGGCTGGACATTCTTCCAGTGAGTATTTATACTCAAATGGACTAT
CCCTTTCTGACTTGTTGTATACATTATGGATAATCACTTGTAGAAACAGT
TATATTAGCAACTATTGCTGGAATCATTTTTAACAGAGATACTGATATCT
TAACAAGAACTAGTATGCTAGTAAATTGCTGATGCCCCATTTTTATGCTT
ATAATATCTCACCTATTATGTTGGTTATTACGTGTCATTGCAATTCCTAT
TCACTGATATATTCCCCAACAGATATTTGACAAATTATGCCAAAGTTTTG
GTGGGGATGTTCTGCAGACCTTATTCAATTCCGCAGATGGATTGGCAAAT
TGTTCCCCAGAATCCAGGACATATTGGTTATGGAGATTTATATCTGATGA
AGCTTTAACAGTGACTTCATCAAATATCCTTTTGCTCTGACATTAAGTGT
TTTATTAAAGTGCTTAACTTGCTATTTACACCATATGAAGTAGGATTCCT
TAACTTCTTTTACTCATTCATTCATTCATCTTATTAGCTCAGGCCATTAC
TCTGTCAACCTGTATAGTCGCTCACAATAATGCGTTGCCAGCTTTGCTGG
TATCCAACAATTTTGCCGAGATTAAAAGCAATGTTTTCAAGCGTTTTAGT
AAGGATAACGTACAAAGTATGGTATACTATGGTATGTGCCTTCTTCGGAT
TTGTTGCCCCTTAAATTTTTATATATTTCATAGTACTGTTCTGCCATTTA
GTAATTGACATATCTTTGTAGTTTAGCATAACTATCATCAGTATATTTTT
TGTATGTGCTCGTTCCTCAGGGTGAGGACAGGGTTGTAAATAGAGATTGA
TTTTGCTGCAATATTTTTGTTTAAAAAGATGCGCATATCTTGTATATTGG
CATACAATTTCAAGCATTGCTAGCAAAGAACATTATAATTACTACATTAA
CAGAATTGTATTGATGTCTACTTCTGCGCCAAAATTAATAAAATGTCAAT
GTTTTCTTGGAAATGCATACAGTTTTGTAACTTTTTTTAGATATTTATTG
AATCATGGTCTCATTTGGTCTTATTTCTCTTGTTTATATTTCGGTGACCA
GATTCAGTGGAGAGGTTCCACATATCGGCCTTTATATTGTTCATCTTAGC
TCAGAACATTCTGGAAGCAGAGTCTCCTTGGTTCGAGAATTTTCTTTGTG
TGAGTTTAATATGTCACTGGCTCAGAGTACATTTTCCAATTAAACCTATT
AAATTATGTAATGGGAAATTCGAAATTGAAATGAATGTTTATCATTCTCT
GACTATTTTCTGCCTAAATTTTTCAGAATGCTTCTATGGTTTTTATATGT
GAAGTTATGATTGATATAATCAAACATTCTTTCATTGCGAAATTTAATGA
CATAAAGCCCATCGTATTCTCTGAGTTCCTCGAAGACCTTTGTAGACAGG
TAATACCATACACACATATATGTATCGTGATCTTGTAATATATTTGATTT
TTTGCCTGGATTGTGGTTTTGTTGTCTCCCTTTAATTATGAATTGCAGTA
ACCTTTTTCTCGTCTATAAGGATAAATGCCCTTCTGCAATATATATCTTA
CTTCATATATGTTTATAGTATGGCATGTGTGAAATACTCTATTTAAAGAG
AATATAAGTCTATATTGTAGAAATACTATATTTAAGTAACCATTATACAA
ATTCATGACCTTGATGACAAAAACTTCCATGGAAGTACCTAAACTTGCGC
TTGTTAATTATATTTCCTTTGCTACAAACTCAAGGATTTAGATCTTATGT
TGGCTTTCTGCCCTGTTGGAGCCATAGTACTGCTTAAATTATACCATAAG
GGTCCAACTCTGTCCACTTTTCCATCTTCTGTTTCATATATTGTAATATG
CACGATTTGAGTTAATCTACAACATCGACATCATAACTAATTAGGAGGGT
TACTGTCATATTATCTAGTTCAAGAGACCTTGCATTACAGAGAAAGCTAA
ATTCCTTGTACGGCAAATAGAGAAAGATCTTAATGAATCCTTTGATAATT
AATGCTTCTCAAGTGCTTTATTTCTATAGATTATTTTCAGAGTACTGAAA
GTATCACTTCTTACTTGGTGGAGATGATTAACATGTGCATAGTTATATGC
ATAGCCAAGTTTGCGCATATATACATACATACATACATACATACATACAT
ACATACACACATATATATATATATATATGTATGTATCTGTCTCTGTGTGT
GTCTGTATCTTCACGGGACGTCTTCTCTTATTGATCATAAAGCTTTTTTA
CAGAGACTGAATTTGCAAATGGAGAATGGGAAGAGAAACCTTACATTTGT
TCCTTTAGCTCCTGCTTGTGTGGTAAGCTTTACATAATATATATTGTGAG
TTTTACAAACACTCTGCTATCTATACTCTTTATTAATAAGCGAAACTTAC
TTTCAGTGGAACGTGCACAGTACCAAAATTTTGTTATCACAATATATTTA
TTTTTATATTAGTACACTTGTTATCTTCTACTACTTTAAGAAGCTCATAT
TTATACAAGTACTTGGTGTATTACATCTTCTACTACAGTTTTTTTAAGAA
CTCTTACAACTACTAGTACTCCAAATATTCTATTTATTATTAATAATTAA
CTATTAATACTATAATTTGGTTATCAAATTTTATTTGTCTTTACGTACTA
ATTTGATTTAATATGAATGCAATATTACATTATCAATTATAGTCCTTTAA
AAACTCGGGGATTATTATTGATGTCATAAAAGACCAAGAGAAGGAAATTA
GGAAAATTCATGATTGAGTTTTTGAGTGTAATAAAAGTGTTAAGAATGAC
ATTCTCACCAATAGATCTTCAGATGCAAAGTTATATTCTGAAATAATATT
TTTTTTAATTCTTTAAAATCAATTTAAGATAGTATTTATTTTTTTAAAAC
TTTTTTATAACATGAAATGATATAATGATGTCATTATCATGTAATTTTAA
TAGTTTTTTATTTCAAAAATATATTTATTTCATTCATTCAAATTTAACTT
TTATATTTAATATCTTATGTATAGATTCAATAAAGTTATATGATTATAGC
AATTTATTTGGGGGTTTTTTGACAAATATACAACTTTTAAAGAAAAGAAG
TTGGAAAAACTTTTTCGTAAAAAATACGATTTTGCAACCAAATACAACCG
GATTGAACCCAAATCAACCTCCAAAACAAAATAGTAAAATCCCAAAAAAA
ACAGAAAAGTAATATTTTTGATAATTTCTTTTACTCTTTATAAGAGTTCA
TAATATTACAAAATTTATTACATGTCATATGTATATATATTAGAGGATAA
TGGGCGTGAGGGTGGTCTCGGGAAACTTACCTGATGTTAGTTAAAACTTC
AGTACAAATTTTTAGGGTAAATTTGTCAATACAAAGCCTACCCCTATTTT
TATTATGAGTTTTTTACGGCCTAGTAATTTCAATGTAATGTATAGCTTTT
CATTTCACTCTGGAATCGACAGTTTATCAGTTGACACAGCTGCATGCTAT
AAGTCGAAACCTACACTATACATACATTGAAACTGGAATCGACAGTTTGT
CAGTTGACATAGCTGTGTGCTATAAGTAGAAACCTGCGCTATACATTACA
TTGAAATTAGAGGTGGCAAAATGGGAACAAAACCATAAAGCCAATTGGAA
CCAAACCAAAATCTCAAATTTAGTTGAACACGATGTCAGAGTTTTCAAAA
TGGTTTTGATTTGGGTTTGGACTACACGTTCCTCCCTTGATGAGGGATTA
AAATCTGTGATATTCACATAACCAAAAACAGTTGTTAATCTTTGTAGATG
AGTATCGCCTTTGTTGATATACAGTATGAATGATATAATGCAACATCAGG
AAAACATTAATGATGTTTGATGCAGAATAAAGGGCTGTATAAAAAATTGA
AAAAGAACAGTATGAATACCGAGATATTGTACATCAAAATATAAATGTGA
AAAAAAACAAATAAATTAAAGATTATATGCACTATAACAATACCCTTATG
AACTGTAGATCATTATGGGAGACTAAATGAATGGATAGACTATATAGTAG
TATTATATATATACGTTCAAATGAATATACTGTTAGCATAAATTATTTCG
AACACTCCTACACTCATCTCTAGAAAATCTACTGAAGAATTACATGTGGT
AATATGGACATTATATGGTATTGGGGATCTGATAGCATACAGAAGCCATT
TGTGGTAGCTCTTAACAGTAGGTATTTATTAAAAATATCCTATTTGGCAA
ACAAAGAAAAGATGCTTAGAATAGTCTTCATTATATTAAAGTTTCCGTAT
ACCCCAACTAAAATTGCAAATTCAAAAATGTATGCTGATTTATTCACTGG
TTACCATTGACTCCTAAATGTTAATACGTTGCTTCTTATTTTCAGGTAAT
CAGAGTATTGAGTCCAATATATGCAGCTCATCTTCCTCATAGCCCTTTGT
TGTGGAGACTCTTCTGGATTTGCATATTATCAGCCATGACTTTTGTGATG
CTTACAAGCCTTAAAGTAATGGTTGGCATGGGACTTCAAAAACATGCAAC
TTGGTATGTCAAACGATGCCAGAACAGGAAACTGCACAATGATTAAATGA
GCTGTAAGAATTTTAGTTGCTCCAGAGGAATCTGAAGATCAAAATCTTAT
TGCTCCACAATGTAAGATATCCAATCAGCACTGGGATTGTATTGGACCTG
CAAAATGCAGGCAGGACTTATCCTCGGGATCTGCCAAGCAGCTGTTGATT
TCAAAAATCATGCATGATTTCGCTTGGTGAATTTTCTTCCCGATAGGAAG
TGGTGAGTGACTGGATACGAACTTCCAAGTGACTCTTGTTCTCAAGGTTA
TTTATATTATATAATAGTATACTTACCTGTGGATATATGCAGGACCTAGC
TTGAGAACTTCCTCAAGCTAGTCTTTTTGGATCACAAATTTACTGTATAG
ATCTTAAACTAACTTTACCTTTTCCATCCAGTCAATGTATCATATAGTTT
TATAGGAAATATATCCGCTTATATAGATATATCATATGAATAAATATATA
ATTATTGAATTAATAGATTTTGCAATGCAGTATATGTTCAACCATTACCT
TCGGTTGGTGTACGCAACTTTTTCTTCTTAATCGAATTTCATTCACCGTT
CATTTAAAATTATGTCGACCAATCGAACTAGGCCCGAGGTACCAAAGTTA
TATGGCCCATTGGTGTCGTAATTATGTCTCAATATGTATTAATATATATA
GAAACGTAGTTGCAATGAAGATTATTCTGAAAATTGATTAGACACCATAG
AGCAAAGTTCAGGTCCATCAATCCATGAGCTGAGAAAAGCAGGAGAATGA
AATAATTTCTGATTACGATAGGGGCCCTTGAAAATTCTGATATATTATCT
GAAACTTATACAGTATAGTTAATATAATACATTAAACCTTCCCCATAATC
ATCACTTAGCTCTGGCTAATTATCATTGCTATAATTGATTATATTCCATA
ACTCATAATTTATCATTAGGGTTCTGAGTATAACTGTTGTAAAGTTTTTC
ATAATAATTGTATCTTCTCTATAGGGATGGTTGAGCATACAACATTTGCC
AAAATTGCAACCGATATGGTGAAACTTTGAAGAAAAATGAAAGACGTTTA
GCAAGGAAATGTGACAAAAGGTCTTAGAAGAGTAAATATAGCATGGCCGT
TAGATACGACTACCAAACAATATGTAAATTATTTGTAATCCTGACCGAAA
GAAAAAAATAATTTATCTACTTTGATATCCAGTTAAATCTTGCTAGATCG
ATAAAAGATATTCAATACTCCCTCCATCCCATTTCAAGTGTCCTGTTTGA
CTTTTGAATGGTCAAATTGACCAAATTTTGACCGAAAGTTATACATATTA
TATAATTTTTAAAAGTAAAAAAGTTATGTCATTATAAAGTACATACAATA
TACTATAAAATGTAATTTTTAGTTTTTTAAAATAATATTGAATTTTTCTT
TATGTTTGGTCAAAAATTGGTCAATTTGACCGTTGAAAGTTAAAACAGGA
CACTTAAAATGAGATGGAGGGAGTATTTAACAAAATGTTCTGAGCATAAA
TCATTGTCTTAAAATTTATTATCATCACTTCTGTCAAAAAAAAAAAAAAA
TTATCATCACAAATAAATGTTAGTATCAGTCCCTACATCTCGTTTGTAAT
TATGATTATTTTTGTTAAAAGTTTCGCGTTAAGTTATCAGTATATACATT
CTCGATCATATATATTTACTTGTCCTGATTTTATAAAAAATCAAGAAAAT
TAAAGGGAAGTAGTATGTTTGTAGATCAGATTGTGTGTATTTCATCCTAA
AAGTTAGATTTTCCTAACGTAAGAAAATAAATTGCAATTGTTTTTATACT
AGCTATAATTATTTTATCATACAAATTCAATGTGAAAGGAAAGCAAAACT
GTTGCGTCGTTCAAGAGCTGCTTATCGAGTTAATTATTGATTAATTAAAA
GAATTAATTTGTGTCCGTATCTTAAGGATGGCTTTTGCCGCTAATTAAAC
GTAGGCCCCACCTACATGTCTGTAAAGTTATGTAGTGTGGTGGAATAAAA
TGTTGACTATATTATCAAAAGATTTTGTTACTTGTTGCACCATTTTTATC
TACACTGTCCTTTCCTTTTCACTTGCCACTACAAATTCTACCACCCTTCC
CATGAAATCTCCTATATAATATCTTCTTTCTCCATTCCTCAGCCTCTCCT
CTCCATCAGTTTCACCTCCATCCCAATTCTCCAACATGGTTAGTTTCCGT
CTTTTCTCGTTCGTAACGGGATATACTGAGTTTGTTTGGTCTAAGTTTGG
TTTTAATTATATTTATCAGGAAATTTATATGTTTATTATGATCAAGAGCC
AAATTATGAGTAATTTGGATCAATTAAGTGATGGAATATACCGAGTATGT
TTGGTTTGGTTTATATCTGTGTAGGATCCGAAAATTTATATGTTTACTAC
GATGATGAGCCAAATTATGAGTAATTTGGATCAAAAGTGATAGAATATAC
TGAATATGTTTGGTTTGGTTTATATATATGTATAGCATCCGGGAATTTAT
ATGTTTACTATGACGATGAGCCAAATTATGAGTAATTCTGGATTAAGCAA
GTAATTTATATATTTGTTGTGCTCATGATTACTAAATTTGTACTGAAACT
TGAAATTTATGTAGGTTGGATGTACAAAACGTTTGCAGAAGAGGAAAGTG
GAGTGGTTGAGAAGCTTATTACGCGTAAAATTCTTTACAATTTGTGATGA
TCATAAGGATCTCAGGAAGAATGAGAAGAATTTGTTTTGTATTGATTGCA
ATATGTGTTTCTGCAAGCACTGTGTCTGTACTAGCTCTCACTGCAGCAGC
TTTCATCGACGTCTCCAAATCTGCAGATATGTTTATCATGATGTTGTTCG
TCTCCAAGAAATTCAGAAATTTTTTGATTGTTCCAAGATCCAAGTTAGTT
CTCGTAATTCAACTTTGAATTAGTATGTTCATACTTGACGGTTTACCTAA
TTCTTGCTATTGATTGATTGGTATATGTAGGGGTGAAAACGAGTTGAATA
TCATCGTACTAGTGTGGTCAATGTTAGTCGTTTTCTTGATATAATTCAAA
TTTGATATTAGTATAATTCAATTAGGATACGAACTAGTCTCAAAATTTAA
CCATTTCAGTATGGTACCCACATTTCTTGTTTTTCTAAAAATATGTTATG
AATTTTGCGGTGATGGTACCTGCTGCCCACCAAATTTATTGTTCTAGTAA
CTAATTTGATTAGTTAGTAAATTTTCGGATGGCATGGTACATCTGTTGAT
GAATTTGGAGTTGCTTTGTAAGCCTTATGAATTTCAGATAAAATATGTTA
TGCATACTACTGGATCAGTTGCTTTAAAGTCTTTTGCATTTGGAGTGAAC
TGTTCCTTTGTTTTTGTTCTTCTGAAATTAACTGGCAAGAACATATGTCT
GCAGACGTATAAAATCAACGGTGAAATGGCTATACACTTGAATCCGCGCC
CTCAATTGAAAGATGTGAAAGCAGCAAAATTAAGGAATGGTGCTCAATGT
CAAGGATGTGGAAGGCACATTCATGACTTCCCTAATCAGTTCTGCTCTAT
TGCCTGCAAAGTATGAAACAATGTGTATTTTTTTCATACCATTTAATTAA
TTGCGGATATCTTTATAAAAAAGAACTCGATCTCCTTCAATTGTAGGTTA
TGAACCTATTGTCTACTAATATGATCAAATTTCAGGTAAATATTTTGAAC
AGAATGTCTGAAGGCGAGGAACATGATATGATTTCCATACCCCTTGATGA
ATTCGACGCTGTTTCTTGGAAAGACAACTATGATCAGAGCGAGTATAGAG
ACGACAATGAATCGTCTCTTTCCCCAACAGATCAGTCATCTGAGGTAATA
CAATGCAGCTGGTTAAGCTCAGCATCAAAGCCTAAGAAACTAGTGCACAA
AAGGAAAGGTGTTCCCAGAAGAGCTCCCCTCTCTTAG
Sequence Length: 
11837
Sequence Checksum: 
384428cc3b387bb7973721aad7972b12
View location in JBrowse: 
Cds: 
>DCAR_030293cds ATGGCGTCGCGATTACGACGTCGTAATCTTTCATTCGAACTCCTCTCCAC CGGACTAGACGACAACGACGATCACATCGCTCCCGAGAACAACAATTTCT ACAGATCTACCTCCGATCCGCTGCAAGGCGATGATGCGGAGGTGTTGAAA TCGGCGAAGCGGCGAAAAAAACGGCGCAATCGCGGCGGTAAGGGCAAAAA GTCGTTGCTTGATTGCGTGATTGCGGAGGAGACGGTTGATTTTGGTAGCA AGAGTTGTAGTAGTAGTTGTGTCACTCAGACTGTTGTGTTTGATGGTGTT TCGGAGTCGAATGGCGGTGATCGGGCGGGTAGCTCGGAGTTTTTGGGGTT GAAAAGCTTGAAAGGAGGTGGATTGAGGCAGAGGAATGTGAATTCTGGTG ATGATATAGCGAATGGCGGTGAATTGGAGTGTGTAAGTTCGAAGGATGGA GATTTGAGGCATAGGAATGTGAGTTGTGGAGGTGATAATGTGGCAAATGA CGGTGAATTGGAGTGTGTGAGTTCGAAAGACGGAGAATTGAGGCAGCGGA ATGTGAATCATGGCGGTAATGTGGTGAATGGCGGTGAACTTGAGCATGTG AGTTTGAAAGACGGAGAATTGAGGCAGCGGAATGTGAATCGTGATGATGT GGTGAATGGCGGTGTGAATAGTTCGGAGTATGTGAGCTTGAAAGGCGGAG AATTGAGGCAGCGGAATGTGAATGGAGGTAAGGAGGAGGAGAGGATTGTG TGTGAGGATGTAAAAGGTGGAGAATTGAGGCAACGAGGTAGTGTGAATGG CAGTGATGAGGAAAAGGTGGTTGTGGAAGATGTTAAAGCAACTGAGAGGT TTGGGGATAGTAATGTCAGGGAGGTTAACGGAAATGTTATGAGGAAATTG GAGAGTGAGACATGGTTGGATTGGAAGAAACTTATGGCCGAAGATCCTAA CTACAATTTACCATTAGAGAAATCTCCATTAAAATATTTTATTGAAGAAA TGTACGATGGTAATTCGCTGCGGAATACAACAATTACTGCCAATGAGAAA GATCGAGAAAGAGTATATGATACTATATTCCGCTTGCCATGGCGTTGTGA ACTGCTCATAAATGTTGGCTTTTTTGTTTGCTTGGATTCGTTTCTATCAC TGGTAACTATCATGCCAACAAGACTTCTCGTCACAACTTGGAAGCATCTA CAAGCAAGGCAGTTCAGGAGGCTTTCAGCAGCAGAGCTGTCGGATTTTGG TTGTTTTCTTGCGCTGGTTTGTGGTGTCATTCTCTTACAACAAACAGATA TTAGCCTGATATATCACATGATTCGTGGTCAAGGGACAATCAAACTTTAT GTGGTGTACAATGTCCTAGAGAATGCTTCTATGGTTTTTATATGTGAAGT TATGATTGATATAATCAAACATTCTTTCATTGCGAAATTTAATGACATAA AGCCCATCGTATTCTCTGAGTTCCTCGAAGACCTTTGTAGACAGGTTGGA TGTACAAAACGTTTGCAGAAGAGGAAAGTGGAGTGGTTGAGAAGCTTATT ACGCGTAAAATTCTTTACAATTTGTGATGATCATAAGGATCTCAGGAAGA ATGAGAAGAATTTGTTTTGTATTGATTGCAATATGTGTTTCTGCAAGCAC TGTGTCTGTACTAGCTCTCACTGCAGCAGCTTTCATCGACGTCTCCAAAT CTGCAGATATGTTTATCATGATGTTGTTCGTCTCCAAGAAATTCAGAAAT TTTTTGATTGTTCCAAGATCCAAACGTATAAAATCAACGGTGAAATGGCT ATACACTTGAATCCGCGCCCTCAATTGAAAGATGTGAAAGCAGCAAAATT AAGGAATGGTGCTCAATGTCAAGGATGTGGAAGGCACATTCATGACTTCC CTAATCAGTTCTGCTCTATTGCCTGCAAAGTAAATATTTTGAACAGAATG TCTGAAGGCGAGGAACATGATATGATTTCCATACCCCTTGATGAATTCGA CGCTGTTTCTTGGAAAGACAACTATGATCAGAGCGAGTATAGAGACGACA ATGAATCGTCTCTTTCCCCAACAGATCAGTCATCTGAGGTAATACAATGC AGCTGGTTAAGCTCAGCATCAAAGCCTAAGAAACTAGTGCACAAAAGGAA AGGTGTTCCCAGAAGAGCTCCCCTCTCTTAG
Pep: 
>DCAR_030293pep MASRLRRRNLSFELLSTGLDDNDDHIAPENNNFYRSTSDPLQGDDAEVLK SAKRRKKRRNRGGKGKKSLLDCVIAEETVDFGSKSCSSSCVTQTVVFDGV SESNGGDRAGSSEFLGLKSLKGGGLRQRNVNSGDDIANGGELECVSSKDG DLRHRNVSCGGDNVANDGELECVSSKDGELRQRNVNHGGNVVNGGELEHV SLKDGELRQRNVNRDDVVNGGVNSSEYVSLKGGELRQRNVNGGKEEERIV CEDVKGGELRQRGSVNGSDEEKVVVEDVKATERFGDSNVREVNGNVMRKL ESETWLDWKKLMAEDPNYNLPLEKSPLKYFIEEMYDGNSLRNTTITANEK DRERVYDTIFRLPWRCELLINVGFFVCLDSFLSLVTIMPTRLLVTTWKHL QARQFRRLSAAELSDFGCFLALVCGVILLQQTDISLIYHMIRGQGTIKLY VVYNVLENASMVFICEVMIDIIKHSFIAKFNDIKPIVFSEFLEDLCRQVG CTKRLQKRKVEWLRSLLRVKFFTICDDHKDLRKNEKNLFCIDCNMCFCKH CVCTSSHCSSFHRRLQICRYVYHDVVRLQEIQKFFDCSKIQTYKINGEMA IHLNPRPQLKDVKAAKLRNGAQCQGCGRHIHDFPNQFCSIACKVNILNRM SEGEEHDMISIPLDEFDAVSWKDNYDQSEYRDDNESSLSPTDQSSEVIQC SWLSSASKPKKLVHKRKGVPRRAPLS*