DCAR_030442 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_030442

Identifier:

DCAR_030442.gene

Locus Tag:

DCAR_030442

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 4 relationships.
Relationships
The mRNA, DCAR_030442, is a part of gene, DCAR_030442.
The genetic_marker, MK010868 9_25402413, is located in gene, DCAR_030442.
The genetic_marker, MK001246 BSSR-089, is located in gene, DCAR_030442.
The genetic_marker, MK003815 K1259, is located in gene, DCAR_030442.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_030442	DCAR_030442.mRNA	mRNA	DCARv2_Chr9:25402262..25411400

Sequence:

ATGGTGAAGGTACGGATGAACACGGCTGACGTGGCAGCTGAGGTCAAGTG
TTTGCGACGATTAATCGGAATGCGTTGCTCTAATGTCTACGATTTGTCTC
CCAAGGTATCAAATATATTTTAACAGTTTTTGCTTGTTTAATGATTTTTA
TGAAATATTTAGTTGATTTTATATTTACTTCAATTTGCACATGTTAATTG
ATTTGCGCGAGTTGTGTTTCTATAATAGAATGTCCAGATTTTCGTGTTTG
TGAGTTGATTTGATGTTGTGGAAGAAGCTGATAGAGTTTTGATGTGTGTG
TGCAGACATATGTGTTTAAGCTTATGAATAGCAGTGGTCAGACTGAATCT
GGAGAGAGCGAGAAAGTTTTGTTGTTGATGGAAAGCGGTGTTAGGTTGCA
TACTACTGAATATATACGGTACGCCTTTTAGTTGTTGCTGATTGTGATTT
CATATAGTTTTAAATTATGCAGATATGATGACGATATGATAAATTAAGGT
ATGCGTTTTAGATGCTGCTGCTTACAAAATGAACGAACTTAAATGTAAGG
AAATGTAGTAGGATTTTTTTGATAATATGGTTATCTGTCGGGTAGAGGCT
TGGAGTTATATATTATTTACAGGTGTATATACGTATTACATGGTTTGTCA
CTTTCTTGAAATGAAATGAATTTTTATTTTTAGTTTATGATTGCAACACC
GTTGGGCCGTATATGATATATGATGTATAAACATTTGGCGCTTCGAAGTT
TTTAGTAGCAGGGGGCATTGAACTGCATACTTCTCGTGGTTTAAAGAATA
ACTGATGGCAAAACGATTACCTTTCCAAAAAAGAATTCTCATGTAGTGAA
TGAGGATATAATTAATTTTTGTTGTGACAACAGCTACATTAAGTTCTAAA
AAAGAATGAGAAGGACTGCAGGAGTCGTAAAATTTTACGCGTCGGTTTGT
TTTTTTATGTAGGGACAAAAGCAATACTCCGTCTGGCTACACACTTAAAC
TGAGGAAGCATATCAGGACTAGAAGGCTCGAGGATGTGCGGCAACTTGGA
TATGATAGGGTATATAACTTTAAAGAATCTTTAATTAGCATACAAGCTAC
CCTAATTAGCATACAAGCTACCCATAGTAGTTACTTATGTTTTGTACTGC
CTCTATTCTGCTCGCTTCAGATAGTTCTCTTTCAATTTGGACTGGGTGCT
AATGCGCATTACGTTATATTAGAGCTATATGCCCAAGGAAATATAATTCT
CACTGACTCCGATTTCATGGTCATGACCCTTCTCCGGTCACACAGGTTGG
TGATTCTTAATCTATATAATAACATTTTCGTTTTCTGTTCATCTTACTTA
ATTTTTTGAGATTCTGATTTTTAAAAACACTGGAACTTGGCATAAATCTC
ACCATTTAATTTAAAATGTAATATAAGAACATTAAGCAATAATCTACATT
GTGCGAAATTTATACCACTTAAATTGAATTCTGTATACTTCTAGTTCTAG
GATTGTGACTAGTAATTGTTTTTTATAGTAATAAGATTTTTGTAAATATC
GATATTTATATTTCACTTCAAGCAGAAGTATGAAATCTATAGATGAATGA
GTTGGTCACATCATTTGCTCGGTGCTAGGATGGCATTGACCGCATTTTTG
GTAGGTTCTACATGCCTTCTAGGTCTGTCATAGTGTCACACATATAAAAT
AGTGTGTTCTTTTGCGTTGGCTGAATTGAGAAGCCAACTAAATAAAGAAT
AGAATCCTGATCACACAAGTGTAGTTTAATTTGACGATTCAACACTTTGT
TTGCTACAAAGTTCCAGGTAGTTCAACTCAAGATTTTGGAGGAATACTCG
CTGTGCAAAGTATTATTGGTTACTAGATTCCTTAATTAATTTTTGTAATA
GAAGCTATAATGTTTGGTTTATGAAGTCTGCAGTACTTCTACTTCCCGGC
CAAATAAAATTAAATCACCAAATCTTTGCAAGTCAAAAGACTGGATGGAT
CTGCAGTGTGCTAAAGTTAAGGCGTTACACCATATTGATGATATCCGGAT
ATATTAACTATATGTCTAAATCTATGAAGTCAAGTTTATAATGCAGTATT
CTACAACAACTATTAAATGCTCTACTCCTTAAAATTTCAGTTTGCACAAT
GTTTTTTTGTGTATTCACCAATTCTAAGTTTGGATAGGTTCTATATATCT
CCTCTGTTGGCGTGTCCTTACTAATATCCAGGGGGGGGGGGCATAAATTA
GTTTAGTGTGAGCAAGAAGGTGCAGCTTAAATTTTTTAATATTTTTCTTC
GTGTTCTGCTAACATAAATATCATTAAAAAAATATACAGGCTTCAAATCT
AGCACATATTTAGTTTGTTCCTACTAATGTTTATAAATTGTTAGGTTTTT
TCAATACTTACAAGTTACAATAGGTACTTTTGATTAAGATTAATGGCACA
CTCATAAGCTTACACATCAAAGCAACCCTAACCACTATCGCATAATATCA
TTGTCTGTTAACAAATCAACACAATTTCTTCAGAAAAGTTAAGACACTTT
CATAAGTTATACAACAAAATATAGACACTTTCATGCAAATTTATATTTAT
TAAACCTGAAATTATTAGTATATTTCACACAAGTACAGTATGTATATATG
TACTCAGTTGTGTACAGATAATAGACTTGTGTGATATATATAGGTTTATA
GTATGTTAAAATTGTGCAAGGCTTTTTATGTGTAACATACCTGATTTTAT
TATTATCTCTGTACTTGATACTTTTTGCTTACTAGACTTGATGATAAGAA
GTTACTAATGATAGGGATGATGACAAAGGATTGGCCATCATGTCACGACA
CCAGTATCCGTTAGACATGTGTAGAGTTTTTGAGAGGACTACGAGCGAAA
AGGTACAGGATGCCCTTGCATCTAAAAGGGAACATGAAAACAGTTTAAAC
GCGCAAGTTACTGAAGTGGGGGATAATGTTTCTGATGTACCTAAAGGTAA
GCAAAACCGAAAGAATACTAAGTCTACTGATTCTAGTAAAGCAAAAACTG
GTGCCAGTTCCAAGCAACTGACCTTAAAGGTTGCACTTGGGGAAGCACTG
GGTTATGGGCCGGGAATATTAGAACATATTATTCTGGATGCTGGCTTGGC
TCCAAATTTAAAGCTCACAAAGGATTTCGAACTAGACAATACTGTTCTTC
CTGCTCTGTTAAAAGCTATTGACAAGTTTGAGGGCTGGCTTGAGGACGTT
ATAAAAGGAGATAAGATCCCAGAAGGATACATCTTAATGCAGCGGAAAGA
TTTGGGGAAGGACTCTAGTAATTCTGAAACGCAAAGCTCTAATCAGGTTT
TATATTTTGCGCATGCATAATCTTATGTTCAATGTATTTTTTTGTGGCTT
ACAGATTTTGTTGGATATTCTAAGATGTATGTTGAAAGGATTGCAACATT
GTATGTATGTAATTACTCTTGTTGTACTTACAGATCTACGATGAATTCTG
CCCGTTAATGTTGAACCAGTTCAAGTCTAGGGATTCTCTGAAGTTTGAGA
CGTTTGATGCATCACTGGATGAATTCTACAGTAAAATCGAGTCTCAAAGG
TCTGAACAACAACAAAAGGCGAAAGAGAGCTCTGCAATGCAAAAACTTAA
CAAGATACGCACTGATCAGGTTCGAACTGAAATTGGCTTGAAAGATCCAA
TATTTCCCAGTTTATAGTTTTTGCATCATTCTTGTTTTCCAGTTTAGTTA
TTGATTCAGTTTGCTGTGTCTTCATACCCTGTGGGGTTTTGATAAGTATT
TTCTGGCATGGCATAATAAATATATATCTAATGGATACTATTGTCCTTAG
GCAGCTTATCTGCTTCAGGTTTGAGGTACCTGTTTATTTTTCTCGTATAT
CTCTAGCTCTAGTGTGATTAAGGCAGTAAACTTCTATTGATTCGGTCTAG
AGTTCAAACTTACAAATTCAGAATTTAGCTTTCACTGATATTGATCAACA
TATTTTTATATTAAATATATCGATTAATGTTTTTAAATTTGAAGCCTTTG
CAATGTTTTTAGGAAAATCGTGTGCATATATTGAAACGAGAAGTTGATAA
TAGCATTAAAATGGCGGAACTGATAGAGTACAACTTAGAAGATGTTGATA
ATGCTATATTAGCTGTTCGTGCTGCTCTAGCAAATGGTATGACTTGGGAA
GATCTAGCTCGTATGGTCAAAGAGGAGAAAAAATCCGGGAATCCTGTGGC
TGGCCTCATTGACAAGCTCTACCTTGAAAAGAATTGCATGACGCTTCTTT
TGAGTAATAATCTTGATGAAATGGATGATGACGAAAAGACACAACCTGCG
GATAAGGTATCATGTGAAGGTTTATATTTAGCTCTCTCTTCCCCTCACTC
ATTTTTATAATGTGTGATGTCCCCATAGATCAATAATTGTGAATGTTCAA
AGATATGATAATTAGTTCCATTCTAATCTTTTATATGAAATTACATAATG
TTAAACCGTGTGTAAACAATGTTATATGTCATCAGAGCACAATACCGGAA
TCACTATGTTCTACATTTGAATGTTTGAACCGAGTCAAGATGTTATTTAT
TGTTGAGAGTTGATATGGTAATGGTATTTGCAAGTCTCGGGTCTTTTGTA
ATAAGTAGCTCTGCTGGCTTATTAATCTAAACTTTTAACCGCAACTTCCT
CGTTGAACCCTTTAGGTTGAAGTTGACCTGGCACTTTCAGCTTATGCTAA
TGCACGACGCTGGTACGAAATGAAGAAAAAACAGGAAAGCAAGCAGGAAA
AGACAGTCTCAGCTCATGAAAAAGCATTCAAAGCTGCTGAGAGAAAGACC
CGATTCCAGCTTTCGCAGGTACATGAACATAAGAGTGACTTGCCTTGAGA
TTTTATCTACAATAGTAGTTTTTATTACTTGAACACAGTCACTTGTTACA
TATACGTACAATCTGATTATTTGCAAAAATAAAAAACTATTTGATCAAAT
TACTACCACACCAATGCTAGGAAGCCTTGTGGAGACCACAGGTAGTATCT
TTCCTCCCAGGTTTCATGGCTTTGGATGTCAGAGGCTGCAATAGTTTTTA
TTTACATGCTCAGTCGGTTGCTCAAGACCTAGCCCCAGAATGATATTAAA
CATTTGCAAATCTTTGTCACGTTAATGTCATCTATACTTTCTGATGCAAC
ATTCACCAACTTCTGTAAGAATGTAGAACTCATAAATTAAGTAATTTTAG
TAGCCATTATATTATATTGAGACGTTGTTTGTAGCTTTTGTGTGGTAATT
TCTATCGAACTGACTTTTAGTTGCTTCATACTTGACAGCTAAGCAGATAG
TAAATCAAATAGAACAGAGTAGAAAAGGTTATAAAAAAAATTGAGGTGGA
AAGGAGTTAAAAGTGGTAATATAGGTTTCTAGTATCATTGTACCGTATTG
CTGTATCTTTTGAATTTTCTTATATAAAAATACAATCTTGATTGACATAT
ATTAATCTCTTACTGTAATTCACTATTGTAATTTGCAGGAAAAAACTGTT
GCTGCAATAACACATATGCGCAAAGTTCACTGGTTTGAAAAATTTAACTG
GTTTATCAGCAGTGAGAATTATTTGGTTATCAGTGGACGAGATGCTCAAC
AAAATGAGATGATAGTCAAGCGTTATATGTCAAAAGGAGATTTGTAAGTT
ATTGCTGTTGTAGATTTGTTTTTCTGACTAATTATATGAATTTTGTTAGT
GCTATAGTATAGCCTATACATTAGGAAATAATTACTACTAACTTTTGTGT
TATATTTATTGAAGTCAATGATATAACATTTTAATGTATGTAAATTGACT
ATTGTTAGACTATTAGATGTAGTTCACATCAGTGACCATAAATGTTTACA
TGTATTGATGTATATCAAAATAAGTTGCAACTGACAAATTTTGTAGTTCA
AGCATTTTGTTATCACTACTTTTCAGTTCTCATGGATAAATCTTTAGTAT
GCACTTGTATTAGTTATTCTCAGCAAGTTCCGTCTTCCTGATAAAATAAA
TAATTGCAAATAGTATTAAAAGATGCATATATTATTTATGCTATTGCTAA
TATTGCGAGTGTGATGGTGAATTAGGTATGTCCATGCAGAACTTCATGGA
GCTTCTAGCACCATAATTAAAAACCATAAGCCGGAAAATCCTGTGCCGCC
TCTTACATTAAATCAAGCTGGATGCTTCACTGTAAGTTAGCTTGCCACGA
TGCTTCCCTAGCCATTTTCTACTTCTCGCGATTTGCTTGGTGAATGAAGT
AACCTTCATTTTGTTCTTGATTAGGTCTGCCACAGCCAGGCTTGGGATTC
CAAGATTGTGACAAGTGCTTGGTGGGTTTATCCTCACCAGGTTAGTAAAA
CTGCTCCTACCGGAGAATATCTTACAGTTGGAAGTTTCATGATTCGGGGG
AAGAAGAATTTTCTTCCTCCACACCCTCTTGTCATGGGATTTGGGATGTT
ATTCCGTTTGGATGAAAGTTCTTTGGGGTCTCACTTGAATGAAAGGAGGA
TAAGGGGTGAAGAGGAGGGATTAAATGAAAAGGAAGAAAGTGAGCAATTT
AAAGAATTGTCAGACTCCGAGTCTGAGGAAAAAGTTCCAGAGAAGAAGCA
TGATCCGCCATCTGGAAGTACTCCAGAGTTGACAAGAGAAGAACCGAAAC
TTGAAACATTATCTACTGTGGAAACCAGCGCTACTTTGTATGACAAGCAT
ACTGGGTCCGAAACTTCTGGAACAACTGTTAATTCTGTTACCCCGCAACT
CGAGGATCTTATAGACAGAGCTCTGGAGCTTGGGCCTGCTTCTGCATCTG
CTAAAACTTATGGATTCCAAGGTTCTCAAGAAGAAACTGCACAAGAAAAT
CTTGAAGACGGAAAAAATGCACAAAGAGAAAAGCCTTATGTCTCCAAAGC
CGAGAGGAGAAAGCAGAAGAAAGGCCAGAAAAGTGATAGCGTTAATGGGT
CTGTTGATCATGGAAAAGAACAGGATGTTGAAAATAATAGTGATACAAGA
AGTGAGTCTGACAAACAGAATCAATTATCAAAACCAGGTGGTGGTGGAAA
ATTGAGCCGTGGGCAGAAGGGTAAACTGAAGAAGATGAAGGAAAAGTATG
CAGATCAAGATGAGGAGGAAAGGAGAATTCGAATGGCTTTACTAGCTGTG
AGTACTAAACCTTAACAATTTCTGCATTATAGATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGGTCCTTACTGTTAATTCA
TACTCACCTTTTACTTGGCATTTTGTTTTCTTTCTTGTTATAAAATTGAA
TAATTGTATATGATGCTGTTTCCCTGAAATATTTTATAAAATGGGACTGC
TCAGCCCTGCTGATATTTTCCAAAGTAGCCCTATGAAATTTTTTCTGACA
TGAACTAATTTGTTTAAACAGGATACATAACATTTCTGTGCTTATGCATT
TTATGCTATATTTGTTATGAAATTTTTTGATTGTTGATTTGATGCTCACA
AGCATACATGTGCATTTTTAAGTGATGTTGGAGCATCTCAGAATGCATTA
TTTTATTATTTCTCTTATCCATTTCACTTTTGTCAACTTTGTCATTGGAA
TGCTCTAGACTCTAGTGTTGAGCCACCCAAAAGTTGCCACAGGGTCCACT
TCATATGTTGAATATATTATACGTTTTGAGAGTAATATAAACGAGAGATA
GCAAGGTTGCCCAAAAGTGGCAGTCACATTGAACCTGCCATGTCACTAGG
CAATAACTATGGAAACATCTATTGGATTTAATTTCCTAATGTACTTGCAA
ATATTCAACAGTTTAGCTTCATGATTTGATTGTCTGCACTGTTGATTAGA
GCACATCATCTTCGTAGTGTACTGCAATTTAGAAACTCAAATATGTCAAA
TACTAACGCCTTTCCATATTAAATTCTGCAGTCTGCTGGAAAAGTACAAA
CTAGCGTTGAGCCTAAGCCTCAAGCAGTGGCAGCTGTGGCAAAACCGGTT
ACTGGTACGTCTCGTATTTACTGTATTGAATGAAAATAAGGATGAAAAGA
ATTGACCGTCTTTCTTGTATTTAGATTAGTCTATTAATTTAGATCTTGTC
ATTTGCAATTTCGCAAAACTACCTATGTCATTTTGATGCTCCAGTTCTTT
GTTAAGAACTTTTCTTGGTGGATTAAACGGATTACATATTATTTTTGCAA
CATTCTCTGTCCAACAAATGTTGCAAATTGCAATCTACAAATATTACCAC
TACTTATTAGTGGGCATAAAGATATGTTTTGAAGACGACATCTTGTGTTC
TCAGGCCCTGAAGATTCGGCAAAGATATGCTATAAATGTAAAAAGGCAGG
TCATCTGTCTCGCGATTGTCAAGAGCATCCGGATGAAGCTGTGCAGAGTC
GTGGAAGTACTGGACCCCAGAACAATTCCAACATAGTAGATATAGGTGGT
AATGAGATGGATAGGATAGCCATGGAAGAGGACGATATACACGAGATTGG
TGAAGAAGAGAAAGAGAAATTGAATGATGTGGATTATTTGACAGGAAATC
CATTGCCCACTGACATTCTATTGTACGCTGTGCCTGTCTGTGGCCCTTAT
AATGCACTGCAATCATACAAATATAGAGTCAAGATAATCCCAGGCACAGC
AAAGAGAGGGAAAGGTAATTTGTTATAAATGTTGTAAATTCTTATAGTAT
GGCTTCTTCTGGTACAGCATACAGTCAGCTCTAGTCATAATGGTCGAAAC
ATGACGCATAGTAGCCTATATATTTTTACTTGAGAAGTTGACATTGTTTA
CAAACCCTGTTTAATTAGCAACATCCTTGAGCATTGTGTCTGTGCAGAGC
TGACTAGTTTTTGATAAATGTTTATCGTGTTTCCATATTTGCAGCTGCCA
AGATGTCTATGAACTTGTTCAGTCACATGCCTGATGCGACACAGAGAGAG
AAGGAACTGATGAAAGCATGTACAGATCCTGAGCTTGTTGCTGCAATCAT
TGGCAATGTCAAAGTGTCTGCGACAGGCCTCAGTCAGCTGAAGCAGAAAG
AAAAGAAGGGAAAAAAAGCTAGCAGACAAAAGAATTAA

Sequence Length:

9138

Sequence Checksum:

bd3d15cf58469ab0cefbe651c5869f20

View location in JBrowse:

DCARv2_Chr9:25402263..25411400-

Cds:

>DCAR_030442cds ATGGTGAAGGTACGGATGAACACGGCTGACGTGGCAGCTGAGGTCAAGTG TTTGCGACGATTAATCGGAATGCGTTGCTCTAATGTCTACGATTTGTCTC CCAAGACATATGTGTTTAAGCTTATGAATAGCAGTGGTCAGACTGAATCT GGAGAGAGCGAGAAAGTTTTGTTGTTGATGGAAAGCGGTGTTAGGTTGCA TACTACTGAATATATACGGGACAAAAGCAATACTCCGTCTGGCTACACAC TTAAACTGAGGAAGCATATCAGGACTAGAAGGCTCGAGGATGTGCGGCAA CTTGGATATGATAGGATAGTTCTCTTTCAATTTGGACTGGGTGCTAATGC GCATTACGTTATATTAGAGCTATATGCCCAAGGAAATATAATTCTCACTG ACTCCGATTTCATGGTCATGACCCTTCTCCGGTCACACAGGGATGATGAC AAAGGATTGGCCATCATGTCACGACACCAGTATCCGTTAGACATGTGTAG AGTTTTTGAGAGGACTACGAGCGAAAAGGTACAGGATGCCCTTGCATCTA AAAGGGAACATGAAAACAGTTTAAACGCGCAAGTTACTGAAGTGGGGGAT AATGTTTCTGATGTACCTAAAGGTAAGCAAAACCGAAAGAATACTAAGTC TACTGATTCTAGTAAAGCAAAAACTGGTGCCAGTTCCAAGCAACTGACCT TAAAGGTTGCACTTGGGGAAGCACTGGGTTATGGGCCGGGAATATTAGAA CATATTATTCTGGATGCTGGCTTGGCTCCAAATTTAAAGCTCACAAAGGA TTTCGAACTAGACAATACTGTTCTTCCTGCTCTGTTAAAAGCTATTGACA AGTTTGAGGGCTGGCTTGAGGACGTTATAAAAGGAGATAAGATCCCAGAA GGATACATCTTAATGCAGCGGAAAGATTTGGGGAAGGACTCTAGTAATTC TGAAACGCAAAGCTCTAATCAGATCTACGATGAATTCTGCCCGTTAATGT TGAACCAGTTCAAGTCTAGGGATTCTCTGAAGTTTGAGACGTTTGATGCA TCACTGGATGAATTCTACAGTAAAATCGAGTCTCAAAGGTCTGAACAACA ACAAAAGGCGAAAGAGAGCTCTGCAATGCAAAAACTTAACAAGATACGCA CTGATCAGGAAAATCGTGTGCATATATTGAAACGAGAAGTTGATAATAGC ATTAAAATGGCGGAACTGATAGAGTACAACTTAGAAGATGTTGATAATGC TATATTAGCTGTTCGTGCTGCTCTAGCAAATGGTATGACTTGGGAAGATC TAGCTCGTATGGTCAAAGAGGAGAAAAAATCCGGGAATCCTGTGGCTGGC CTCATTGACAAGCTCTACCTTGAAAAGAATTGCATGACGCTTCTTTTGAG TAATAATCTTGATGAAATGGATGATGACGAAAAGACACAACCTGCGGATA AGGTTGAAGTTGACCTGGCACTTTCAGCTTATGCTAATGCACGACGCTGG TACGAAATGAAGAAAAAACAGGAAAGCAAGCAGGAAAAGACAGTCTCAGC TCATGAAAAAGCATTCAAAGCTGCTGAGAGAAAGACCCGATTCCAGCTTT CGCAGGAAAAAACTGTTGCTGCAATAACACATATGCGCAAAGTTCACTGG TTTGAAAAATTTAACTGGTTTATCAGCAGTGAGAATTATTTGGTTATCAG TGGACGAGATGCTCAACAAAATGAGATGATAGTCAAGCGTTATATGTCAA AAGGAGATTTGTATGTCCATGCAGAACTTCATGGAGCTTCTAGCACCATA ATTAAAAACCATAAGCCGGAAAATCCTGTGCCGCCTCTTACATTAAATCA AGCTGGATGCTTCACTGTCTGCCACAGCCAGGCTTGGGATTCCAAGATTG TGACAAGTGCTTGGTGGGTTTATCCTCACCAGGTTAGTAAAACTGCTCCT ACCGGAGAATATCTTACAGTTGGAAGTTTCATGATTCGGGGGAAGAAGAA TTTTCTTCCTCCACACCCTCTTGTCATGGGATTTGGGATGTTATTCCGTT TGGATGAAAGTTCTTTGGGGTCTCACTTGAATGAAAGGAGGATAAGGGGT GAAGAGGAGGGATTAAATGAAAAGGAAGAAAGTGAGCAATTTAAAGAATT GTCAGACTCCGAGTCTGAGGAAAAAGTTCCAGAGAAGAAGCATGATCCGC CATCTGGAAGTACTCCAGAGTTGACAAGAGAAGAACCGAAACTTGAAACA TTATCTACTGTGGAAACCAGCGCTACTTTGTATGACAAGCATACTGGGTC CGAAACTTCTGGAACAACTGTTAATTCTGTTACCCCGCAACTCGAGGATC TTATAGACAGAGCTCTGGAGCTTGGGCCTGCTTCTGCATCTGCTAAAACT TATGGATTCCAAGGTTCTCAAGAAGAAACTGCACAAGAAAATCTTGAAGA CGGAAAAAATGCACAAAGAGAAAAGCCTTATGTCTCCAAAGCCGAGAGGA GAAAGCAGAAGAAAGGCCAGAAAAGTGATAGCGTTAATGGGTCTGTTGAT CATGGAAAAGAACAGGATGTTGAAAATAATAGTGATACAAGAAGTGAGTC TGACAAACAGAATCAATTATCAAAACCAGGTGGTGGTGGAAAATTGAGCC GTGGGCAGAAGGGTAAACTGAAGAAGATGAAGGAAAAGTATGCAGATCAA GATGAGGAGGAAAGGAGAATTCGAATGGCTTTACTAGCTTCTGCTGGAAA AGTACAAACTAGCGTTGAGCCTAAGCCTCAAGCAGTGGCAGCTGTGGCAA AACCGGTTACTGGCCCTGAAGATTCGGCAAAGATATGCTATAAATGTAAA AAGGCAGGTCATCTGTCTCGCGATTGTCAAGAGCATCCGGATGAAGCTGT GCAGAGTCGTGGAAGTACTGGACCCCAGAACAATTCCAACATAGTAGATA TAGGTGGTAATGAGATGGATAGGATAGCCATGGAAGAGGACGATATACAC GAGATTGGTGAAGAAGAGAAAGAGAAATTGAATGATGTGGATTATTTGAC AGGAAATCCATTGCCCACTGACATTCTATTGTACGCTGTGCCTGTCTGTG GCCCTTATAATGCACTGCAATCATACAAATATAGAGTCAAGATAATCCCA GGCACAGCAAAGAGAGGGAAAGCTGCCAAGATGTCTATGAACTTGTTCAG TCACATGCCTGATGCGACACAGAGAGAGAAGGAACTGATGAAAGCATGTA CAGATCCTGAGCTTGTTGCTGCAATCATTGGCAATGTCAAAGTGTCTGCG ACAGGCCTCAGTCAGCTGAAGCAGAAAGAAAAGAAGGGAAAAAAAGCTAG CAGACAAAAGAATTAA

Pep:

>DCAR_030442pep MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGQTES GESEKVLLLMESGVRLHTTEYIRDKSNTPSGYTLKLRKHIRTRRLEDVRQ LGYDRIVLFQFGLGANAHYVILELYAQGNIILTDSDFMVMTLLRSHRDDD KGLAIMSRHQYPLDMCRVFERTTSEKVQDALASKREHENSLNAQVTEVGD NVSDVPKGKQNRKNTKSTDSSKAKTGASSKQLTLKVALGEALGYGPGILE HIILDAGLAPNLKLTKDFELDNTVLPALLKAIDKFEGWLEDVIKGDKIPE GYILMQRKDLGKDSSNSETQSSNQIYDEFCPLMLNQFKSRDSLKFETFDA SLDEFYSKIESQRSEQQQKAKESSAMQKLNKIRTDQENRVHILKREVDNS IKMAELIEYNLEDVDNAILAVRAALANGMTWEDLARMVKEEKKSGNPVAG LIDKLYLEKNCMTLLLSNNLDEMDDDEKTQPADKVEVDLALSAYANARRW YEMKKKQESKQEKTVSAHEKAFKAAERKTRFQLSQEKTVAAITHMRKVHW FEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTI IKNHKPENPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAP TGEYLTVGSFMIRGKKNFLPPHPLVMGFGMLFRLDESSLGSHLNERRIRG EEEGLNEKEESEQFKELSDSESEEKVPEKKHDPPSGSTPELTREEPKLET LSTVETSATLYDKHTGSETSGTTVNSVTPQLEDLIDRALELGPASASAKT YGFQGSQEETAQENLEDGKNAQREKPYVSKAERRKQKKGQKSDSVNGSVD HGKEQDVENNSDTRSESDKQNQLSKPGGGGKLSRGQKGKLKKMKEKYADQ DEEERRIRMALLASAGKVQTSVEPKPQAVAAVAKPVTGPEDSAKICYKCK KAGHLSRDCQEHPDEAVQSRGSTGPQNNSNIVDIGGNEMDRIAMEEDDIH EIGEEEKEKLNDVDYLTGNPLPTDILLYAVPVCGPYNALQSYKYRVKIIP GTAKRGKAAKMSMNLFSHMPDATQREKELMKACTDPELVAAIIGNVKVSA TGLSQLKQKEKKGKKASRQKN*