Resource Type:
Gene
Organism:
Name:
DCAR_031174
Identifier:
DCAR_031174.gene
Locus Tag:
DCAR_031174
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_031174, is a part of gene, DCAR_031174. |
| The genetic_marker, MK004403 K1847, is located in gene, DCAR_031174. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_031174 | DCAR_031174.mRNA | mRNA | DCARv2_Chr9:33292284..33304058 |
Sequence:
ATGACTTCTCTTCTATCATTCACACCAAGCCCAATTCTCTCTCCCCCTCC
ATTCTTGACCCGACCCGGTACCAACCCACTCCTCCACAACCCGACCCGGT
TCGGTTCTTTATCTCCCCACAGACCCTTTGTTCCCCGGACTCTCTGTGTA
GTCAATTTCGGGTCGGGTCAGTTACCAGACTCGGAAACAATTAAGGGCCT
GTTTGGCAAAGCTGAGAGCATTCTTTATACTATTGCTGATGCTGCTGTTT
CAACTGAAAATGTCACAAATTCGAAAAATAATGATTGGTTTTCTGGGATC
AGTAATTATATGGAGACTGTTCTTAAGGTCTGTGTAAATGAAGTTTGTAT
TTTTAATTCTTGATTATTTTAGTATTTTTAGTGTGTAATTCAAGATTTTT
GATTTTGATGAAAATGGTGGACTTCAGGTTTTGAAGAACGGGTTATCTTC
TGTACATGCTCCTTATGCATATGGGTTTGCGATTATTTTGTTGACTGTGC
TTGTTAAAGCAGCTACCTTTCCTTTAACTAAGAAACAGGTTAGTTTTGTT
ATCGAATAATGATCTTAATGTTTTTGTTAGTTTTTAACTCTTGTTTTTGC
ATGCGGAAGAAATTTCATGAAGATGATGCTTAAGGGTGTGATCAAGGCTA
TTGTAAATGAATGTTAATGATCTTGCAGGTGGAATCTACCATGGCAATGC
GATCATTGCAACCTCAAATAAAGGCTATTCAGCAGCGGTATGCTGGTGAT
CAGGTTACTTATTTATCTTTTTTGAGTTGTTTTTTCTTTTTACCATATGC
TTTGTCTAATTGGTTACCCTAATTGTCAACATGGAAATGCATGAGTATAT
ATGTAATTTGTATTATCTTGCTAGAATTCTGACATAAATGGATTCATGAT
CATACTCTGATGTAATTGGTTAAGCGTATAATAATCTAGGGCATTGTGGA
AATAATATTTAGAATCTGCACTTTAATTGGTCACGCTTATTTAAAATGAC
GGATAAGTTTCCGTTAAGACTGACATTTAGTAGTGATTGGTTTTCTAGAT
TCCAAATTGATTTCACCTTTTGTCTTCTTTCAGGAAAAAATTCAGATTGA
AACTGCTCGGTTGTATAAATTAGCAGGGATAAATCCTCTAGCAGGTAACT
TTATTCTCCCTTTTTTTTTTCCATGCATTCATGCCCGATGTTTTTGTCTG
ATCCTTCATGGGGGGTATATATAATATAATAAAGGCAATGGTTGGGATTG
GTTACTGCATTGAATTTATTGACAAACATTCCATTTAAATGTAGGCGCCG
ATCCTTATTTATTAATTATTACCTAAGCAGATGGTATCAGACTTCTGTAT
ATATAATTTTTACCTGTTCTTTAGACTCTTCAAGCGAATAGTTGTTTGAT
GTAGGCATATAGCTTCCTGAATAGCGTTTTTAAAGATAAATCAGAGTTCT
CAAGGCTTTAATTTCCTCTGATTGAGAAATGAAGTATTATATGTGATTCC
TACTAGATTGAAATCCAATAAATTTGGAATTGTTAGTATATGCATGTTGG
ATGTTACCTTTGGGAAGCCATTACATGTGATCATGGATTTAATATAATTT
TGTGTGCTCATTTATATCATCTTTGCTTGTAAATACTAATCTTTATTGCA
ACAGGATGCCTTCCAACACTTGCCACGATCCCTGTATGGATTGGGCTATA
TAGAGCTCTTTCTAATGTTGCTGATGAAGTAAGTCCTTGTATAGTTTTAT
GTTTCAACATCTGTTGCTTTAAGCTGTTATACTTGAGTAATCTCATGCTT
CTTTTTAATTATTATTCTAATGAAAAGGGACTCCTGACGGAGGGCTTCTT
TTGGATCCCATCGCTTGCTGGCCCTACAACAGTTGCAGCTCGACAAAGTG
GAAGCGGAATCTCTTGGCTTTTTCCATTTATAGTGAGTATAATTGTTTAT
GGAGATCTGACGTCCTTCATTGGTATACTCGTAAAATTATAATCAGTATA
TGTTTTTCTCCTGTTTAAATTTCAGCAAAAGATCTGCTGATCGTAATATC
TTAAGACAGTCGTGGATAGTATAACTGGTTACGAACAATCTTTAAAGTTA
CTATGTAGTATATATTCTAGATTATGAACAGTTTACTGTTTAGTTGGAGA
GAACTCTGAACCTTGAGATTTTCTAGAAGTGCTTTAAAATATATATATAA
TGAAGTTTGCACTTGTAAACATACCGAATTTTTTATAATGCTGTGGAATT
AAACGTCACCTTCTGTTGCTTGCAGGATGGTCATCCTCCTCTTGGATGGT
CAGATACCTTCGCCTATCTTGTCCTGCCTGTATTGCTGGTTGTTTCTCAA
TACATATCTGTTCAAATTATGCAGACATCACAGGTTATTATTACTTTAGC
TAACTTGTTCAAAATCTTGCTTCTTGTATCATATGTAGCTTACTTTACCA
AGCCTTTTTGTCCCTGCTGAATGTAGGACTTCTATTTCCGCCTGACAATC
AATTTTATCTCCATGCATAATAGTCACCCTAGTGGGCATGTTCGACAGGA
TTAGTATACTTGTAACCTTGACAATGGATACAATATAAATAAATAACTTT
AGAGCAGCTCCAGTGGGAGCCGGACTTACTGTGTTGATATGCATGGACAT
TGAACAGGAACTGGCCTTTCTTTTGTAGCGCTAGAGTGAGTGATGAAAAA
GTGGGTGGTCCCACTTTTGTGGGACTGACGATTGTAGCCCATTCCAATTT
TCTAATATATTCTCTGTTCTTCAACAAGCTGAAGTAGTCAACCGAGAGCT
GTTAATGGGTGAAGCATAACCAGATTAATTTAGAAAAGTACCAACATATT
CATGTATTTTATCTAATGTAGATATTTATAAAATATCTTTCATATGAATT
CAATCCGTAATGTTCTATTTGAACTATATAATGATTTCTAATTATTTTTT
ATTATTTTTATTTTTGATTTCAATTTTTTAAGATATATTACGCCAATTGC
AAAACATTAAATAGATTCAAACTTATGTTTACTTGAGCAAGTAGATTAAT
TAGGGCCTCCTAGACGTGGTAATTGGGCTTTGTCATTGGAGGATTTTACT
CACTGTTTGCTAATGTGGCCTGTAAGTTTTTCATAAAAAAGTGGGGAGTG
GGCTTTGTTATTGTAATTGCTTTCAGGATAAATCTTTCATTTGATACAGG
ATAAGGATTTATGTTTTGTCTGACACCTGTCCTTTATTTTATACTTCCAG
AGTGATGACCCAAACCTAAAGACTTCTCAAGCCATAACAAAATTTCTGCC
TTTGATGATTGGTTATTTTGCTCTTTCAGTGCCTTCTGGGCTAAGCCTTT
ATTGGTGAGTGGTTCTATACTCTACTTCTATGAATACACTATCCTGCTCG
TTAAATCTCTGTGAAGACACTATACAAGTTTGACATATTAAATAGATTTG
GGACACAATTATAAGCTACTTTTGCTAATTTAATGCGCACACTCACTCAC
AGTTTTTCCTTTTACGATGCTTGAACCCTCAACCTTCCATAAAGGGGGTG
GGGGGAGAAGGGTGATACAGCCAGGGGATGATCGCTTTCGTTATTGTCTG
TCTTTTAAATACTGGTTATGAGTTTCCATCTTTAAACAATTGTTCTTGTT
TTTGTTAGGTTGACCAACAATATATTAAGCACAGCTCAACAAGTATGGCT
CCAGAAACTGGGAGGTGCAAAAAACCCTGTAATTCAATCCCGCACTGATA
TACAAGAGCTGTCCAAGAGTCAGACATCTGCAATCGAAACAACCACAATT
AATGTGGCACCTAAAAAAGAAAAAAAACAGACCCCGGATGGACCCCGTCC
TGGCGACAGGTTAACAGATGACATGCACATATATTGCATACACTATTGTT
ATAGTTTTAGATCTGTGGTAAAATTATAGGTGTTGTATTTTTCAGATTTA
AGCAGTTGAAGGAGCAAGAGGCAAGGAGAAGAAAGCAAAAAGAAGAGGAA
GAAAGAAAAGCTAATGTAGTTGCAGAAAATGATGATCTAGTAACCAATGG
GAAACTCAAGCCAGGAACTTATTCAGTTGAGAAAGAAGATACAAAATCGG
AACCCCTTAATACTGATGACCTGTCTTCCACTGAGATATCTTCTATCAAC
GGAAATAGCTCTCCTCAAGAGTTAAAGGAATATCAGGATATATCAACTCG
GAGGGTGGAAGATGTAAGTTCCAGTAAGGGAAAGGATGATTAGCATCTGT
ATGAAAATTTAGAAAAGGTAAGATATAGCAATATCGAAGACAGAATTTAG
TTTATATCATATGCTTGTTTAAAGTATGCATCTTTGTTCTCAATTCTCGA
GCACGTCATTTATCTTATCTGTTCTGGATGTCGTCTTCTCGTATTCATGG
TCTTATTCTGCAGTCATTTATCTTATCTGTTCTGGATGTCGTCTTCTCGT
AGTCATGGTCTTATTCTGCATTTATCTTGTACATGTGGTTACTGGTTACC
TGTTACTGGTTATTGTCTTTGTCGAGATTATTAAATTTGGTTGTTTGCAA
TACTCTTTATTAATGACCATTGTTACATTTCTTTCATACCAGGAAGAAGC
TGTTACTACTTTAGGCACGGGAGAAAGTATAGTCTCCGTTGATGACAACA
GAAGTCGGGATAGAAGTTGAGTTGTTTTAAATGTGACTTGGAAGTTGTGA
CCAGATACAGTAACAAGAACAAGACATCAGGTCAATTACACAATATAAAG
AGAAGGCATGACAGATGTTATACTGGTGATCTCTCAAGGATCTACTGCCA
TAGATGAGAAAGATTGTTACTTGTTTGTTTGCTTGCTTTGTCGGAGTCAA
CATAGGGTGTATATTACTAAAAACAAATATAATGAAATATAGGAAAATTT
TGATGATTGTTTCCTTTTTTTTGCTTTACAATAATGGAATTAATATTGTC
TGTGGTAAAGAATGTTATTAGATCAGATATCGAGTTTTATGAAAGTGGCT
CCCTAAAGTTGTCATAGAGTTGTTGCAGTGAGGAATTCTTTATTCTGAGC
ATCTTTTACGTTGAGTTTATTCAAATTTATCTATAGATGATCATGTGATT
AGGGGTTCTAAAATTTTGCGATTCTGGGCACAAGAACTTATGCATAGGCA
GGATCACTCGGAATCTTATCAGTTTTAAGAACTTACGCCTAGGCAGGATC
ACTCGAAATTTTTATCAATTTTAATGGAACGGGAAGAAAGCATGCAGGTC
GTGACAGTAGATTGGACGTGTCGGGGAAAAGAAAACCGTAATTGACACGT
TTTGTACCACTCACATGTGGCGATAGATTCATGAGCAAATATAGTAGATA
AGAGTGTCGCCACTTGTATGTGACATAGATTCATGAGCAAATACAATATA
AGAATTACTATCATAATTGAATGTATTTTCTTATAATAATTTCCCTTATT
TGGATAGTGTGAAAAAAAATGTATATACTATATAATGTGAATAAAAAAAT
ATTAAGAAAGAAATAACTGTACTTAAAAATAATAAAAATTAAAAGAGACT
AGGGCCAGCTGTCTAGAAATATGGAGAAGAAACTATTAATGTTACATGGT
GATCTCTTTAAATTTCCTGGAAAAATAAAATATATAAATGGTTGCTAAAA
GTAGTTAATTTAACATAGCTAATGTCCTACATCAGGGTTTAAAGTTTTTC
GCATGAAGTGTTGTAAGCTTTTTCTTTACAATGATGGATGGATTCATGTG
AGTACAGAACATGAATCAAGACCTGTTGTCAGAATTTCCTTGATCATCAG
CAAATCAATATATACTAAGTAATAATTATATTAACCCCAGATATAGAATA
CATGAATCAGGTTATACCCATGGTCGTTAGCAAATCTAGTGCAGCTATCA
ACTGCTAGGACAAAAGAAGACCTTATGTATCTGCAATAACCTGGGGAAGT
CTGGGTTTCTTTTTAAACCATAGGCAGTGCTGAGTATATTTGTCGCATAG
ACACTTCTAAGAGTCCTAATGTATCAGCTTATAACCACTCTAATATTAAG
TAAATCAAGCCTCATTAAGGGCCAAGTACTAGCAGTACGCGTCTTTTTCT
GAATGATCATAAATTTACTGAGGTAACTGATGAATTTTATTTGTGCTGTT
TCTCAGGAAAATCTGAGTTCAAATGTAGTCAGTCAGGAGACTGAGCATTA
GTATCATCTCTTTAACAGGTGACTTCGAAGGAAGTCCAAGTTAGCACCCC
CTGCTATGGAAGTACCAATGACCATACTTTCTTTCTCTCAGAATCGGGTA
AGCTATACTCTTTTGATGCTGGTAAATATGAGCAGTTACGCGTTAAACAT
CTCCCTAACCATTCTGATCATAAGCCTAATCCGGAGCAGGTTGATGTTGG
TCTTGGCTAAAAGATGGTATCTGTCCCTAATTCAGTATTCTTTTCTTTAT
ATGCAGCTAAATTGAAAAACAAGGACTGTGGAGAGGGAGAACAGGGGTCT
TCGGAGAAAGTTTTAGCACACTTGTTTCAGGTCAGTTCCATGAACAATTA
AGCATCTTTTCATCTTTGTGAATAATCCATCTGTCACAAGGTTCACAGTC
GCGGTTACACTATTTGGTATTACACGTTCATAGAATTTATAGAAGCACAT
GCCATAACCTTTCCGGTTGCATAGAAAACAAAGACAATGTCATTGGTTCA
GTGACAGGACAACAACTGGGTCACTGTAAAAACAGACAATGTTATCAGTT
TGTCTGTACAGACTTCATAAAATCTCCGCGTGCCCAGTGGGAGCGATAAA
ATCTAGTGTGGATAAACTGCAAGGACTGTGTAATCCTCTAAAATAAATGT
TATAAATAAAAAGAGTCTGATGATCCTTACTCCTTAGCAGGTGGGTATAT
GATGTGGAACAACCTCAATCCTGCAAGAACACAGGGCCTACCTCACATGG
GAGAACATGCTTTTGTTTTCCCTGTAACCTTGAAATTTATATGCCCAACT
TTATTCAACAACAGTGACGAAAGGAACTCCACGATGTACACAGCCTTACC
CTTAATTTTCACACTGAATCCGTTTTCTAGAACCCCGACGCCTAAGTAAA
TAGCAAGTAGACATTTGAACATCCGCTCCCACGAGCATGCAGTAAAGAAA
GACCAGACATTGCATGTGGCAGAGGGGATCAAAAGTCAGTCTCGTGGGAA
CGTAGTACCCTGCGTACGTCTCAGAGTCTCTCGATGCATTAAACCCTGGC
GGTTTCTACAGTTATTTTCTTCTGTTCTTCCAGAATCATATACATAAACA
CATCACAAAGAATACTATTAAAGGTAAATGGAGTTAAAGCGCCTTCAAAA
CAGGCTTTGTAATGAAACTGACATATAACAATGTTGATAAAGATTTACAA
AAAGGTACTCTAATTGAACCCAATTATAACTGCCTTAACCAAATGCAACA
GAACACTATAATGTCAATACTCTACCTTACATGTATAGACTATAGATTAT
TGTCTTTCTTATTCAACACTACCAACAGATATTTCCAACTAGTGTCGGTT
GTATACTGATTATGCTTAATACCATGGTTCTAAACTCGCCAAATTAACCG
ATTAATTATGTGATTGATCGTCATGAGGCATTTTGTGATTTGATTTTCAT
TTATTTGACTAGTACTGTTTCACTTAATCATTATAATGTCGTGTTATTGA
TGAATTCCGACTATCAATTTCTACAACTATGTTTAGGCTCTGTTTGATAT
TGCACTTGTAGACATCAAGAGTCGTTTTGCTGAAAAATAGGTGAAAAATA
TTTGGTAAATCTAAAAAAGCTTTTTCGGACAACAATTTTTAACTCCAAAG
TTGTTTTTTGAAAAAGCAGGTACCTTCATGTATTTGAAAAAAACTACTTT
TCTTACCAAAATCAATATTTTTATATTATAACTTAAAATATGCAAATGCA
AATATAAAACACCAAACCATTATCTGATATCTACAACCAGCACTTTTTCT
GACAACACATCAGTTTTTAAGAACACTCTAGACAACTCTTAATACATCAT
CAACATCTATGGCAATTTCTCAGGAAAATCTGAGTTCAAATGTAGTCAGT
CAGGAGACTGAGCATTAGTATCATCTCTTTAACAGGTGACTTCGAAGGAA
GTCCAAGTTAGCACCCCCTGCTATGGAAGTACCAATGACCATACTTTCTT
TCTCTCAGAATCGGGTAAGCTATACTCTTTTGATGCTGGTAAATATGAGC
AGTTACGCGTTAAACATCTCCCTAACCATTCTGATCATAAGCCTAATCCG
GAGCAGGTTGATGTTGGTCTTGGCTAAAAGATGGTATCTGTCCCTAATTC
AGTATTCTTTTCTTTATATGCAGCTAAATTGAAAAACAAGGACTGTGGAG
AGGGAGAACAGGGGTCTTCGGAGAAAGTTTTAGCACACTTGTTTCAGGTC
AGTTCCATGAACAATTAAGCATCTTTTCATCTTTGTGAATAATCCATCTG
TCACAAGGTTCACAGTCGCGGTTACACTATTTGGTATTACACGTTCATAG
AATTTATAGAAGCACATGCCATAACCTTTCCGGTTGCATAGAAAACAAAG
ACAATGTCATTGGTTCAGTGACAGGACAACAACTGGGTCACTGTAAAAAC
AGACAATGTTATCAGTTTGTCTGTACAGACTTCATAAAATCTCCGCGTGC
CCAGTGGGAGCGATAAAATCTAGTGTGGATAAACTGCAAGGACTGTGTAA
TCCTCTAAAATAAATGTTATAAATAAAAAGAGTCTGATGATCCTTACTCC
TTAGCAGGTGGGTATATGATGTGGAACAACCTCAATCCTGCAAGAACACA
GGGCCTACCTCACATGGGAGAACATGCTTTTGTTTTCCCTGTAACCTTGA
AATTTATATGCCCAACTTTATTCAACAACAGTGACGAAAGGAACTCCACG
ATGTACACAGCCTTACCCTTAATTTTCACACTGAATCCGTTTTCTAGAAC
CCCGACGCCTAAGTAAATAGCAAGTAGACATTTGAACATCCGCTCCCACG
AGCATGCAGTAAAGAAAGACCAGACATTGCATGTGGCAGAGGGGATCAAA
AGTCAGTCTCGTGGGAACGTAGTACCCTGCGTACGTCTCAGAGTCTCTCG
ATGCATTAAACCCTGGCGGTTTCTACAGTTATTTTCTTCTGTTCTTCCAG
AATCATATACATAAACACATCACAAAGAATACTATTAAAGGTAAATGGAG
TTAAAGCGCCTTCAAAACAGGCTTTGTAATGAAACTGACATATAACAATG
TTGATAAAGATTTACAAAAAGGTACTCTAATTGAACCCAATTATAACTGC
CTTAACCAAATGCAACAGAACACTATAATGTCAATACTCTACCTTACATG
TATAGACTATAGATTATTGTCTTTCTTATTCAACACTACCAACAGATATT
TCCAACTAGTGTCGGTTGTATACTGATTATGCTTAATACCATGGTTCTAA
ACTCGCCAAATTAACCGATTAATTATGTGATTGATCGTCATGAGGCATTT
TGTGATTTGATTTTCATTTATTTGACTAGTACTGTTTCACTTAATCATTA
TAATGTCGTGTTATTGATGAATTCCGACTATCAATTTCTACAACTATGTT
TAGGCTCTGTTTGATATTGCACTTGTAGACATCAAGAGTCGTTTTGCTGA
AAAATAGGTGAAAAATATTTGGTAAATCTAAAAAAGCTTTTTCGGACAAC
AATTTTTAACTCCAAAGTTGTTTTTTGAAAAAGCAGGTACCTTCATGTAT
TTGAAAAAAACTACTTTTCTTACCAAAATCAATATTTTTATATTATAACT
TAAAATATGCAAATGCAAATATAAAACACCAAACCATTATCTGATATCTA
CAACCAGCACTTTTTCTGACAACACATCAGTTTTTAAGAACACTCTAGAC
AACTCTTAATACATCATCAACATCTATGGCAAAAAAAAAAAATACATCAT
CAACATCAACATAATTGACATCAACTACTTAATCTTCAACTTTATGGTCA
TATCTTTCTTTCATATTCTGTCTGCATAACATCATTAGCAGTTAGAACCA
TACTGCAAAGTTGGTTGTAATTACTCAGATAAACCCACATAAATTTGGTT
AAGTAGAAAATTAATTATTATAATAATTAGGGAGCAAGATGGGTACATGT
CTTCTATCAGAGCATTGTTCATCAACCTCCCATCCTCTATATTAATATCA
CTCTCCTTCCCAAGCTCCTCACACAATTATTTCTGAGCCACTACGAGAAA
TCAAAGCTCGATAATTAAAGATGCATTTCACATTTCTGTTTTGTTTGTTC
ATCGTTCTTCTTGTAGGTCCAAGCTTTACTCTGTCCTCCCCTGTTCAAGA
TCCTGAGCTAGTAGTACACGAAGTACACAAGTAAGAAAAATTACTACAAA
ATTTGTTCCGAAACAATAAATGTGCTTGCTCAACATTGAGTTTTTGTTTT
ACAGGAGTATCAATGCATCTAGGAGGAAGTTGAGTTTTTTGTCATGTGGT
ACGGGGAATCCTATTGATGATTGCTGGAGATGCGACAAGAACTGGGAAAA
GAACCGACAGCGTTTAGCAGATTGCGCGATAGGCTTTGGCAAAAATGCCA
TTGGGGGAAAAAATGGTGATATTTATGTGGTCACAGACTCGAAAGATGAT
GATCCTGTGAACCCGAAGCCAGGGACATTGAGGTATGGTGTCATCCAAGA
CGAGCCTTTGTGGATCATTTTTGAACGAGACATGGTGATCCAGCTGCGCG
AAGAATTGATGATGAACTCGTTTAAGACCATTGATGGGCGTGGCGCGAGT
GTCCATATTGCTGGAGGGCCATGCATTACGATTCAATATGTGACAAATAT
TATAATTCATGGTGTGAATATTCATGACTGCAAGCAAGGGGGGAACACGA
ATGTCAGAGACTCTCCGGGGCATTATGGATACAGGACAATTTCGGATGGT
GATGGAGTTTCGATTTTTGGAGGAAGTCATGTTTGGGTTGATCATTGCTC
TTTGTCAAATTGTAACGATGGTCTTATTGATGCCATTAGAGGGTCCACAG
CAATCACGATATCGAACAATTATATGACTCACCATAACAAGGTTATGTTA
TTGGGTCATAGTGATACTTTTACGCAAGACAAGAACATGCAAGTCACTAT
CGCCTTCAACCACTTTGGCGAAGGCCTTGTTCAGAGGATGCCGAGGTGAT
TATTATAGAATGTGTGCCTGCAAATTGTCCGTGATTGAATGCTGTTAAAA
TTCTGTTTGATTAATTGCAGGTGTAGGCATGGATACTTCCATGTGGTGAA
CAATGACTATACTCATTGGGAAATGTACGCGATTGGTGGCAGTGCTGCTC
CGACTATCAACAGCCAAGGCAATCGGTTTCTTGCTCCCAATGGTCAATTC
GACAAAGAGGTGAGAATTATCTGAGTATCTGACATGGAGTATATAATACT
TTTCTGATAAATTTTCAGTACTAAAATAGAAAACAACTTGTTTCTCCAGG
TTACTAAACACGAGGACGCGCCAGAGGATGAATGGCGTCGATGGAACTGG
AGGTCTGAAGGGGACTTGATGCTCAACGGAGCCTATTTCACAACATCAGG
GGCAGGTGCGTCTTCTGGAAGCTATGCAAAAGCTTCAAGCCTTGGCGCAA
GATCGTCTACGATGGTGAGCTCATTAACAGGGGGTGCAGGTGCTCTTATT
TGCCGAAAAGGTTCCAAATGTTGA
Sequence Length:
11774
Sequence Checksum:
ca948b60809be1a43c7406b3b5f06a33
View location in JBrowse:
Cds:
>DCAR_031174cds ATGACTTCTCTTCTATCATTCACACCAAGCCCAATTCTCTCTCCCCCTCC ATTCTTGACCCGACCCGGTACCAACCCACTCCTCCACAACCCGACCCGGT TCGGTTCTTTATCTCCCCACAGACCCTTTGTTCCCCGGACTCTCTGTGTA GTCAATTTCGGGTCGGGTCAGTTACCAGACTCGGAAACAATTAAGGGCCT GTTTGGCAAAGCTGAGAGCATTCTTTATACTATTGCTGATGCTGCTGTTT CAACTGAAAATGTCACAAATTCGAAAAATAATGATTGGTTTTCTGGGATC AGTAATTATATGGAGACTGTTCTTAAGGTTTTGAAGAACGGGTTATCTTC TGTACATGCTCCTTATGCATATGGGTTTGCGATTATTTTGTTGACTGTGC TTGTTAAAGCAGCTACCTTTCCTTTAACTAAGAAACAGGTGGAATCTACC ATGGCAATGCGATCATTGCAACCTCAAATAAAGGCTATTCAGCAGCGGTA TGCTGGTGATCAGGAAAAAATTCAGATTGAAACTGCTCGGTTGTATAAAT TAGCAGGGATAAATCCTCTAGCAGGATGCCTTCCAACACTTGCCACGATC CCTGTATGGATTGGGCTATATAGAGCTCTTTCTAATGTTGCTGATGAAGG ACTCCTGACGGAGGGCTTCTTTTGGATCCCATCGCTTGCTGGCCCTACAA CAGTTGCAGCTCGACAAAGTGGAAGCGGAATCTCTTGGCTTTTTCCATTT ATAGATGGTCATCCTCCTCTTGGATGGTCAGATACCTTCGCCTATCTTGT CCTGCCTGTATTGCTGGTTGTTTCTCAATACATATCTGTTCAAATTATGC AGACATCACAGAGTGATGACCCAAACCTAAAGACTTCTCAAGCCATAACA AAATTTCTGCCTTTGATGATTGGTTATTTTGCTCTTTCAGTGCCTTCTGG GCTAAGCCTTTATTGGTTGACCAACAATATATTAAGCACAGCTCAACAAG TATGGCTCCAGAAACTGGGAGGTGCAAAAAACCCTGTAATTCAATCCCGC ACTGATATACAAGAGCTGTCCAAGAGTCAGACATCTGCAATCGAAACAAC CACAATTAATGTGGCACCTAAAAAAGAAAAAAAACAGACCCCGGATGGAC CCCGTCCTGGCGACAGATTTAAGCAGTTGAAGGAGCAAGAGGCAAGGAGA AGAAAGCAAAAAGAAGAGGAAGAAAGAAAAGCTAATGTAGTTGCAGAAAA TGATGATCTAGTAACCAATGGGAAACTCAAGCCAGGAACTTATTCAGTTG AGAAAGAAGATACAAAATCGGAACCCCTTAATACTGATGACCTGTCTTCC ACTGAGATATCTTCTATCAACGGAAATAGCTCTCCTCAAGAGTTAAAGGA ATATCAGGATATATCAACTCGGAGGGTGGAAGATGTGACTTCGAAGGAAG TCCAAGTTAGCACCCCCTGCTATGGAAGTACCAATGACCATACTTTCTTT CTCTCAGAATCGGGTAAGCTATACTCTTTTGATGCTGCTAAATTGAAAAA CAAGGACTGTGGAGAGGGAGAACAGGGGTCTTCGGAGAAAGTTTTAGCAC ACTTGTTTCAGGTGACTTCGAAGGAAGTCCAAGTTAGCACCCCCTGCTAT GGAAGTACCAATGACCATACTTTCTTTCTCTCAGAATCGGGTAAGCTATA CTCTTTTGATGCTGCTAAATTGAAAAACAAGGACTGTGGAGAGGGAGAAC AGGGGTCTTCGGAGAAAGTTTTAGCACACTTGTTTCAGAATCATATACAT AAACACATCACAAAGAATACTATTAAAGGTCCAAGCTTTACTCTGTCCTC CCCTGTTCAAGATCCTGAGCTAGTAGTACACGAAGTACACAAGAGTATCA ATGCATCTAGGAGGAAGTTGAGTTTTTTGTCATGTGGTACGGGGAATCCT ATTGATGATTGCTGGAGATGCGACAAGAACTGGGAAAAGAACCGACAGCG TTTAGCAGATTGCGCGATAGGCTTTGGCAAAAATGCCATTGGGGGAAAAA ATGGTGATATTTATGTGGTCACAGACTCGAAAGATGATGATCCTGTGAAC CCGAAGCCAGGGACATTGAGGTATGGTGTCATCCAAGACGAGCCTTTGTG GATCATTTTTGAACGAGACATGGTGATCCAGCTGCGCGAAGAATTGATGA TGAACTCGTTTAAGACCATTGATGGGCGTGGCGCGAGTGTCCATATTGCT GGAGGGCCATGCATTACGATTCAATATGTGACAAATATTATAATTCATGG TGTGAATATTCATGACTGCAAGCAAGGGGGGAACACGAATGTCAGAGACT CTCCGGGGCATTATGGATACAGGACAATTTCGGATGGTGATGGAGTTTCG ATTTTTGGAGGAAGTCATGTTTGGGTTGATCATTGCTCTTTGTCAAATTG TAACGATGGTCTTATTGATGCCATTAGAGGGTCCACAGCAATCACGATAT CGAACAATTATATGACTCACCATAACAAGGTTATGTTATTGGGTCATAGT GATACTTTTACGCAAGACAAGAACATGCAAGTCACTATCGCCTTCAACCA CTTTGGCGAAGGCCTTGTTCAGAGGATGCCGAGTACTAAAATAGAAAACA ACTTGTTTCTCCAGGTTACTAAACACGAGGACGCGCCAGAGGATGAATGG CGTCGATGGAACTGGAGGTCTGAAGGGGACTTGATGCTCAACGGAGCCTA TTTCACAACATCAGGGGCAGGTGCGTCTTCTGGAAGCTATGCAAAAGCTT CAAGCCTTGGCGCAAGATCGTCTACGATGGTGAGCTCATTAACAGGGGGT GCAGGTGCTCTTATTTGCCGAAAAGGTTCCAAATGTTGA
Pep:
>DCAR_031174pep MTSLLSFTPSPILSPPPFLTRPGTNPLLHNPTRFGSLSPHRPFVPRTLCV VNFGSGQLPDSETIKGLFGKAESILYTIADAAVSTENVTNSKNNDWFSGI SNYMETVLKVLKNGLSSVHAPYAYGFAIILLTVLVKAATFPLTKKQVEST MAMRSLQPQIKAIQQRYAGDQEKIQIETARLYKLAGINPLAGCLPTLATI PVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQSGSGISWLFPF IDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQTSQSDDPNLKTSQAIT KFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKLGGAKNPVIQSR TDIQELSKSQTSAIETTTINVAPKKEKKQTPDGPRPGDRFKQLKEQEARR RKQKEEEERKANVVAENDDLVTNGKLKPGTYSVEKEDTKSEPLNTDDLSS TEISSINGNSSPQELKEYQDISTRRVEDVTSKEVQVSTPCYGSTNDHTFF LSESGKLYSFDAAKLKNKDCGEGEQGSSEKVLAHLFQVTSKEVQVSTPCY GSTNDHTFFLSESGKLYSFDAAKLKNKDCGEGEQGSSEKVLAHLFQNHIH KHITKNTIKGPSFTLSSPVQDPELVVHEVHKSINASRRKLSFLSCGTGNP IDDCWRCDKNWEKNRQRLADCAIGFGKNAIGGKNGDIYVVTDSKDDDPVN PKPGTLRYGVIQDEPLWIIFERDMVIQLREELMMNSFKTIDGRGASVHIA GGPCITIQYVTNIIIHGVNIHDCKQGGNTNVRDSPGHYGYRTISDGDGVS IFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYMTHHNKVMLLGHS DTFTQDKNMQVTIAFNHFGEGLVQRMPSTKIENNLFLQVTKHEDAPEDEW RRWNWRSEGDLMLNGAYFTTSGAGASSGSYAKASSLGARSSTMVSSLTGG AGALICRKGSKC*