Resource Type:
Gene
Organism:
Name:
DCAR_003624
Identifier:
DCAR_003624.gene
Locus Tag:
DCAR_003624
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_003624, is a part of gene, DCAR_003624. |
| The genetic_marker, MK005265 K2709, is located in gene, DCAR_003624. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_003624 | DCAR_003624.mRNA | mRNA | DCARv2_Chr1:40713094..40725327 |
Sequence:
ATGAAGGCCATGAAAACTATCGAAGATCTCATCGAAGAAGCGAAGATTCG
AACTGTTTGGTGGGCCCTTTGTATATTCTCTGTCTCGTACTTCTTAACAC
GTATGTTTGCTCTTCATCTCTTGCTTCCTTATTATTAAGACGCGCTTTCT
TTAATTTGCTTTTGCTAATTATTTTCGTGGTTTTTACTCGAATTATTTTG
TGTGAATTAAGTAATATTTGTTGCTTTTTACTCAAGATTCAAGCTTAGAA
TAGGCTATTTGCAATTGATGTTTCTTTTTTCAATTTTGCTTTGGTGGTGC
CATTTTCCTCTTTACCTCATTATCTGTTCTAGCATTAGTCTGTTGGATTT
TCTTGTTATTTCTCGAGATTTTAAATTCAAGCTAGCCCTATTAGTTTTAA
GTTAAGAAGTAAATCTTGTTGACCCTTTCTTGGGTAGTTAGTGTCCATCC
TCAAATTGTAACCAATTATAGGGTTTTCTGTTTTTGGTATGATCATTTAT
AAAATTGTAATACAACTCACTTGTGCATGTGTTTGCCGAGATTGAACCTT
CTAATTTTGTTACAAAAATAAGAGCGGGGAATCCACTTGACCACAATGCT
AGGATACTTTTTGTGGTAGGATGTGGAAGCTATGGTTTTTTATTTTAAAC
TTCTTGCCCCCTCTGTATGTTTGTATAACTTGTAATGATTTGACGGTGTT
GAATTTATTAATCTTCATGCAGATACAAGTAAATCAATGTGGATGAATGT
TCCTATATCTATTCTCATAGTTTGTGGATTACGGATATTGTGTAATGAGG
TTGAGTTCCGCTGGAAGGTCCGTAATATCCGTCGGCAGACCTATCTTTCC
CACTTAGAAAAGAAGCAATTATCTGTTAATGATTCTCGCCTTTCGAATTC
CCCTCCACCTCCAAAATGGAAGAGAAAAATTGACTCTCCAGTTGTGGAGG
CTGCGATGGATGACTTTGTAAAAAAACTTTTGCAAGATTTTGTTGTAGAT
TTATGGTATTCAGATATTACACCAGATAAAGAGGCCCCTGAGCTTATACA
TGCAGTGGTCATGGATGTACTTGGAGAAGTGAGTGGTAGAGTAAAGGAAA
TAAACTTGGTTGAATTGTTGACGAGGTTGTTTACACAAGTCTTCTTTGTC
ATTTGTTTAAAAGTCTTTTTGGAAGCTTTTAAGGTCGTGCATATATGAGT
TCAGAGCGATCGTACTAAACTTTTGGTGATTGTTTTCAGGGATATTGTAG
ACCTTATAGGTAAAAATCTAGATCTATTTAGAAGAAACCAAGCTGCTATC
GGGATGGAAGTTATGGGGACGCTGTCTTCTGAAGAAAGGGATGAAAGGTT
GAAGCATCATCTCTTGGCTTCTAAGGAGCTTCACCCAGCATTGATATCTC
CAGAGTGTGAGTACAAGGTGTGAGTTGAGTGTAGCTATGCATAATTAATT
TTATTACAGAGCTCTCTGTGTGTTGTATCGTCTGAGACTTGTAGTTTCTG
TAGGTTCTTCAACGGCTTACGGGCGCGCTTTTAGCAGTAGCACTTAGACC
ACGGGAAGCCCAATGCCCTCTTGTTCGATGCATTGCCCGGGAGTTGGTAA
CTTGTTTGGTGTTGCAACCTCTCATAAATTTGGCCAGCCCTGCGTGAGTA
AATAAATATATCTGTATTTTTTCATAATAAGTGTCTTCCTCTTTATCTCT
GTTTTAGATATGTGTCGTCCTCTATATGTTTGTTTCTTTATATACATGGT
TCATGGCTGTCTCAAGAAACTTGCAGGCTGTGTTAATATGAGTTCTGATT
TGTAATTAGTATTTAGGCTTTGACTTGTTTTGCCAAAATCTGGACCAGGT
TCATGTATATAATGACTTTTTTGTGTTACTCTGCATGATAAACTTGTATA
TCTCTATATCATAGATTTCCAATTGGAATGGACCTAACATCAAGTATCAT
CTGTTTATGCCTGCAACATGAATAAAGATATCCTAGTAATGTAAAATTTT
AAAATGTTTCTAGATTTATATGTTTTCATTTTGTTATAGGTTGAAGAATA
TTGACTTCTATTTGTGCTTTCTTATTAGAAGGGTTTGGTTTCACGCATTC
CTCTAATCATTTAATTATTAAATAAACTAACCTGTGTCTTAGGACCCTGT
CCATTTTGACTATATCTGTGTTCTGACATGATTTAACATTCTACTTAACG
TAAGTATCTGATCTGGACACAGTTTTTAATCCCTCGACATGTAATATTCA
TTTTGATATTTCTGTTTGTTCACGACTACATGCAATGACTCTTTAATTAT
CAAACTTTCCATGTGGTGCATGTGTCTTTTGTTTGCAACGTTTTTAGATT
TAGGTGTTGATTGTTTTGTGTGTACACACTTTACAGGTATATAAATGAGT
TGATTGAGTATATTTTGACTGCTCTTAAAGATGTGAGCATTAAACAGATA
GGTCTTGGTCAATCGCCCAATGTAGAGGGTCATAAAGGTGATCATGTCAT
TACTGGAGATCAACATCATGTTGAAGCTGCCACAAATATAGCTACATCTT
CTCAAAGTAAAGGGACTGACATGACACTGTCCAGATATGAAACTGCAAAA
GAAAGTGTATCAGATGGTTCAGAAAATTCCATCACCAACACAAGTCATAA
TGAGGCCATGCATCCACGATCTGCTGAATGGGCTAGAGTCCTTGAGGCAG
CTACCCAGAGAAGAACAGAAGTTCTTATGCCTGAAAATCTTGAGAATATG
TGGGCAATAGGAAGAAATTACAAAAAGAAGGTTCAGAAACTTGCTGCTGC
AGGAGGTCAGTCTCCTCTAATACAGGGGTCAGATTCAAGCAATGCACTGT
CTACCAATTTGGATAAGGAAATATCAGCTCAGAAGGCTGAAGCATTCACA
AGAATGGAGAATCAACCTTTAACCCCGGCACATTCAAGGCCTCCGATAGA
TTCTCGACCAAGTAATCAAATCAGTAGTGCAACCCTTAATACACCAACTC
TGAACAAAGTAGTATCTCTTAAGGGAAACCGAATTGTAAATGAAAGTGAG
AATTCCACATCTTCTATTGCTAGTGGAAATAAAAATAAGATGACTAGATC
AAATAGCACCCCGGATTTGAATACTGAACCAGTAATGAAAACTGATTCTA
TCTGCAAGAGTGGTGGATCAGTTATATCCGAGTTCTGCGATAAAGATCTT
AGCAGCACGAGTCAAGCTACTAATGCAAAAAGTGCTCTAAATATGGTTTC
ATCTAGTGAGGGACAACAGGCGGTGAAGCTAAGGTGTCGGGTATTTAGCC
ATTTTTCCCTTAATTGAACGTGCTTGTAATTTATACTCTTTATTAGACTT
TGAGGGCACCTGGTCACTCTTTATATATAGTACTGAAAATATATTTAGTT
ATATTATATACCATTTCTTCATGTCTTTAATCTATGCCAATATGCCATAT
GTAAAGGGAAGTTCCTGATGGTTTTCTGGCCTTCGCAGGTTGTGGGAGCA
TATTTTGAAAAACTTGGGTCAAAATCTTTTGCAGTTTATTCAATTGCAGT
GACAGATATTGATGGAATAACCTGGTTTGTTAAAAGAAGGTACAACACTC
ATTTTACTCTAGTGGGATGTTTATAGATTTTACCTACTTCGGAAGTTGCT
TATTTGTGAATATTGTTTTGATCATTATCTCCTTGCAAAAGTTTCTGAAG
CTTGGGTTGAATTGTTCAGCCCATTATTATGGATCTTTCATCTTTTTTTA
ATATGTTTGTTAGATTGTCTGAGCAGATACAGGAATTTTGAGAGATTGCA
TCGTCAGCTTAAGGATATTCCCAACTATACTTTACATTTGCCTCCCAAAA
GAATATTTTCTTCCAGCACCGAGGATGCTTTTGTTCATCAACGCTGCATT
CAACTTGACAAGTATTTGCAAGTATAGTTTTCTCCCTATTCTGCTTATGC
AAGATTTACCCTAATGCGTTGTAATCTTTTGAGTATTTTATATCTACTAG
GATCTCTTGTCAATTGCTAATGTTGCTGAGCAACATGAAGTGTGGGATTT
TTTGAGTGTTTCATCAAAGGTGATATTGCTTCTTCTTCGTTCTATGTTCA
CCATCACATACACTAGAGACACTACTAAGTAAACTAACGCCTTTTATTCG
ATGTTTTTTAGAATTATTCTTTCGGAAAATCCCCCTCCATGATGAAATCC
CTGGCAGGTAGTAACCTTTCCGCTTGTGTTTTTTCTATTGCATTGTATGT
CTGAATTCTTGTGTATGTTTGACTATTAGATGATGAAAACTTTTCCATTT
ACTCTAAATCTCTTGTACTTAAAAAACATAATTATATTCAGGTCACTGAG
AGCATGTTTGATGTTAGGAACTTGACTTATTATTTTTTGTTTTATGAATG
TTTTTGCATATGTTTAAGCTATGAACACAGCAGATCAAGGATAAAAATAG
ATATAGGCTAATACAGATGAGAAATGAAATTCAGACTCAACAAGCAAAAG
AGGTGAAGGTTAGAGGGAGAAAGTTGTTATAGAGAGAGTGCAGACTGCAG
AGAGTTTAGTGAGAGAGAAGTGGTGGGAAAACATTTCCATTTTTGAATTA
TAATTCAAAAGCCAACTGAATTACAAAAGGAATTGGTATTTACAAGTTCC
AGCTTCCACAGCTGTAATGACTAGTTTACCCTTACTAATATTTTTCCCGA
GTCATAAATTCCTCTCCACTCACTTGTATAACCAAGTCTGAGCATTTAGT
AGCACTTTCCAGGGAAGCTCCATTATGTAACCTGAGACTTACATGATCGA
CCAATTCCCAAAGACAATTTTGCACTTACCAAGTTGAGAGTGCTGCCTGC
ATCCAAGAGTACCCTTGCAGCTTGATAGCTGCAAATACTTTTGAAATGCA
AGGGTTGAGGCCTTGTAGTGGTTTGTGTCTATATAGTTGCCAGAACAAAT
TCTCCACCCTGACCCTCGACTTCTTCATCTTCAATGTACTCATCATTCCT
TGGTTCCTCACAATCTTCACCATCACTTTCTGCAATTATTAGATTGCCCC
ATGGCTTCTCACACTATTGTCCTCTATTTGTGAGTAAGTACGAGGTCTGG
GCTTATAGGAAGTTACTTCTGCTGCCTGGCACTGAATAGGAAGTAAGCTT
TAGTGCTAAAGACTGTTCCAGAAGTGGCCACTGCAGTCTTTGCAGCCTGT
TGATAGGAGTTATTGCTTTTGAAATCACTTCCATAGTTTCCATATTACTT
TAGAGTAGCATTTAGGGTTCCTTCATAGTATCTAGCCAATTTGAGAGCCT
GCTCTAGGGACTGAGGTCCAGCAGTCTTATCATTCCTTTCATATCCAATT
CCAACCCTTCAATGAAATTCTCCTGGAAATACTCTGCAGTCAAACCAGGA
ATTTTCTTTAGTAATTGACCCCTACATTGTTTGAAGTTATCATAGTACTC
TACGGTTGTTGTAATCTTTTGAATTCATCAAAGACTAAATCATGTCTAGT
TCCCCAGATTTGGCAATAAAAGCTTCAGAGATATGTTGCCAAATTGCCCT
TTCTTGTCCAATCATGAAGGATTTATACCATGATCTTGGAGTCCATTCAA
GTCCATGGCTACACAATGGCAGCTCTCTTGCCATCATGCACCTCATAGAT
TGTGAAGTATTCCTCACAGTCCCTCAGCCACTCCATGGCATCTGCTCCTT
GATAACTGGAAATGACAACTTGAGATGCTTTGGATTTCATTTGGTCTATC
CTTGTTAAAACCAGTACTCTTTGTTTCATCTGCAACTTTAACCTGCCTGT
GCAATTGTCTCTGTCTTTTCAGAGCTGCATGTACTGGATTCTATACATTC
CTCTACCAAAAGACCCTGGAGATACATTCTCCTCGACTCCTTCAATGTCC
TCTTTATAACTAGCTTCTAGACCTTTCTTCTTTGCATTCTTCTGATTCGA
TCCTATCACTAGCAACTAAATCTGTTGCTGTAGCCTCTCAATCTTCTCAT
TAGTCCCCAGTAAGTCTTGCTGTATCGTTCTCAATGTGCCTTGGTGAGAG
GCTTCTGAGACTTCATCACTCTTGTAGTAACTAATTCTTCACTCAATTAA
TCAAACAGATGTAGAGCACTTGTTTACAGACAATCTTCCTGCTCAGGTTT
AATCACAATCACACCAAGCTTACACCTCAACTGCTCCACACTCCAATATA
CAACTCCTTACTTCAATTCTACTGGCAAGTTGCACTACTACAAGTCTCAG
ATCAGTTTGGCAAAAAAAATAAGTGTCTCAGATTGACAATCATTCTCCAA
TTATCAAACACAGCACAAAAACAAAGTAACACAACACAGAGATTCTCCAC
CACTACAATTCCACTAAAATTGTGATAGAATCCAATTTCAGCAACGGGAC
ACTACTAGTTACTTGTAAACGACTCTAAATCCCCTGAAACAACTTCAATC
ATAGCTAATAGTAACAGAAAAGTAACAGATGTGAGAGTTACAGTGAAGAA
CAGAGCACCTGTACTAAATTCAACATAAACTGAGGTTACTTCTTCGATTT
ACGAAATTCTGGTCTCAGTTGACTCGTTTTAAGCTGAACAATATTTTGAT
AGTTGAGGGTGTAGTCATACACTTCTGTTTATAGAAGTCATAACATATCC
TTATAATTTTCCTCATCAATTAGGCAGTGTCTCTGGATAGTATATTTGTA
TATTTAACAATGCAGTATCGTTCCTGGCTAATGTATTTATTATCAGGCTT
TGGGCTAAGTTCTTTGCTGTACCTGTATTGCCCTAAATTGTTATGTAGTC
ATAAAATGTCAGCAAGATAGTATTGATTAAGAGTGTCTTTAACTCTTTAT
ATATACAGTTATGTATAACAAGTGACGTCTATTTATCACTACTGATGTCA
TGTATACTGCGCAGGGATCTGGTTTTGACCATTTTACCAGATTTTTTTTT
TAGTGTAAATGCCATGGTGTTTGATGAGTGTATAAATATATTTGGCTCTT
GAAATATATTGATGATGTTATGCTCTCTGGTTCATGTCATATACTAGGCT
AACTAATATGATTGATGACTGACTAAAATACATTTCACTAATTTTATTAT
GTTTTAATATTATTTAACCAGTCAACGTGGATGATGCTATGGATGACATT
GTACGCCAGTTCAAAGGGGTTTCAGATGGATTGATACGGAAAGTCGCTAG
TCCAACTTCAGTACCTGAACCAGCTTCTTCGGCTTATGGAAGGAATTTAT
CCTTGAAAGAAGATGAGATAAACAAGTTAAATCTGAGACGGGATACTGCA
GATTCAATTAATAGTTTTTCTGATGAGGAGGGTGATAAAAGTACCAACCT
TCATGGTAAGGATTCAGGATATGATATACAAACTAATGGTTGGCATTCAG
ACAATGAACTGAACTCAAAGGAATTTCCACCAAGGGTTGTTACACGTAGT
GACGACTTTAGAAACATCTCTTCTGAGGAAAAAGCGTTTTCTACTCTGCA
GTCTGAATTGTCAAGTCTCCGTGCTTCTCCCGGGGTGAAATCCCCATTAA
CTCCTGGACAACTGGACGATCCAATTGGAGTACCACAAGAGGTATTGTGC
ATGCTAACTAAATTTAATTGTTGGACACGTAGTTGCTTGAATTAATAACC
TCATTTAATTGATTATTGTTTTCATGTTTGAATTTTTGTCCTATTCCATT
ATGAGTTCTTATGTTGAGAATGGACTATGGGGCAGGACGATAAAATATTG
CAGGATGCGACAAATCTGTTCTTTGTTTATTAGACAAGCCAAACAAATAT
AAATAGATGATAACTCTCTTGCTTATTACTAATTTTATTCAGAACATATG
TGTACATATAATATCCTTAATGCTTCTTTGGTTCTTTTTTGCAGTGGACA
CCACCAAATTTAAGTGTACCCCTGTTGAATTTAGTTGATAATGTCTTCCA
GTTAAAGAGAAGAGGCTGGCTAAGGTGAGAGGCTGTTTCTATATATTATA
GCAATTAATATGGTTGTATAACTTCTTTCTTGCTATTTTAAATCTTCTAA
CATAGCAAACATGTTATTATGGTATCTGACATGTTTATGATATTCTAAAA
TATTTGGCATACCTTTATATTTGAAATTTTTAGTTATAAAGAATCCATTT
AGTTAGGTTCACCTCAAGTTTCTCACTTTTTCCTCCAGATATTTGTAGAC
AAAGATTGATAATGAATATCTGATTTAGGCATCTTCAAGTGAATTATGTA
GGTATCATGTGAACTGAATACTCCCTTGTCTCAGGGTCAGGAACTTGTTA
AAAAATGAATTTAGTAATAGCTAAATAGGTGTAATTGTGTGTATGTGAGG
GAGGGAGACCGATGATAATAGCGATGGAGATTTTGGACATACATGATAGT
GTGAACTCAAATAATTAGTGGATAATAAGAATTTACAGGAGCAGATGATA
GACTTCAATCATATATTGACTTCTCTGAAACATTCTGGAATAACAAAGTC
TATGTGGAGTATTAGGAGACTCCTTTGGCGTCTTGAGGGAGATACTTTGA
ATAATTTGCAACTTGTAGTTTAATCTCTACATCATAGTCGACTTGTCCCT
TACCAAGTATTGCAATTAGAAGAACCAAAACATAAATTTTAGGTGAAGTA
TACTCGTTAATCCCAATTATCTCTAAAATTGGTCACACTTGCAATAGTAT
TTGGAAGACGCGTTTTAAGGCTTCAAAGTGACATATAGGTTTTTTCTTCT
AGATGCATAGATAATGAAATAGCTTACACTGATTCATTTTTCCGTACCCA
TCACACAATTGTTAACTCCCTTTCTTCAGTTCTTTGCATCTATTAATAGT
TTAATTCTTTGTATGCAATAATGGTTGCCCTATAGTTAATTGATGAATGA
CAAATTAATACAGAAGTTGATATTGAATAGAAAATTTTAAATAGATAAAC
TAGGGTGATTCTTCTGCAGAAGAATCCCTATCCTAAGGGAGGAAATATTC
TGAACAGACTTAATTCCATATTTATTATTCGAATAATCAAATATTGGATA
ATGTGGGGATTACTTCACTTATGCACACTTATAGAGAATAACCTTATGGA
CCAAGGCCCATGACAATTCATAAAACCGAAAATACAAAGTCCAGTTCCTA
CAAACATATAAACAAATACACTAATTTTCGTCTACCCTAATATAGACAGG
TTAGATAGTAGCATATATAAATAACTACCAATTCTCACTTTTGTTCCCCA
TCATGAAACCATGTGGATAAGATTGTTTAAGAATACTGTTGGAGATTTAA
GATCATAAATTAATTTTTTAAGTTGAGAATACGAACCTTGTTACAATCGT
TTCTATGTAAGACATTTTATTTGAGTTTTTATGGAAGACATGCAATTTTA
GACTAAGAAATGACAATTTTTGTTGTGATCTGTGCTAAAATTTGTGCAGA
ATAGTAATAAACAAGTCCCCAATACTATATACTTGATGGGTTCGGGTCCC
TGCCAATCAATTGTTGCACCAAACTATCCACAATTTTTTATAGCGGAAAG
ATATTAACCCTAGATTTCTTGTGTGCATGCAGTGGGCCCATGAGCCCATC
CGCGCTTTAGACATCCACTCTAGGGTTTTTTCCTTCCGGCGATAAAAAAG
AGCAGATAGTTTGTTGCCAACAATCAATTTCTAGGACCATCTCCCGTACT
TGATATAATACAAGGGTTGAAAAACAAGTGAGAAAACCCGCCTTTACCAA
AATTGAATTGAAATATAAATAAAGTGTCATGTTCAAGAGAGAACCATTAG
AGAAAGAACCCATAGAACCCTTAACTTATTTCTAGTATTAGTTAGAGTTC
TGCAGCAAAACTTCACATGCAAAATATGTCAATATCTATGTACTATATTT
CAAAATCATTTTTGAACACACACAACGATGAAAAAACATGGAAAAAACAT
GTATTTAGATTTAGATGCTAAAAATCTATTTAAAATTTAGGGTTCTGCAG
CGGAACCTTAGTGGTTCTCTGGTTCTATTTTAAGGACTGGTTCTCTCTTG
AGCGCGACCCATAAATAAATCATGTGATTCCTCAAACTATTTATATTGTT
GATTCTTGATATATAACTATCACTATATCTATTCTAGAATAGCACTAAAT
AGCCAACACAAATATCCAATTACAAATACACATATATAAATAACAATATA
TAATGGTTAACAACTAAGACAGTTATTTCCTGAAACACATTAGTTGGAAC
AATATTCGAGGATGCAATAATAAGTGAGACCATAAAACTGTCCCAACAAG
TCTAGTGTTCAAGTGCATAAGTATCTGACATGGGTACAATGGCAGATGGC
TTAGCCAAAGAGTTCAACTGTTCAAGTAATGAATTGTGGTACATGTATGA
ATGAGGTCTTGGCAATTTTATGTTTTGTTTAATTAAGCAAAGTGATCCAC
GTCTACATATGTCCTTCAGTTCCAAACCGCACACGAAAGATTCCAGTACA
TTGCTTGAGACAAAGTAACAAAAGAACGTGCCTTTCTACTAATCCACTAA
TACAGCTAAGAGAGTCTCTGTTTTTATCATCTACAGGTATTGTAATTATA
CTAATACAGCTTTACTGGTTATCTACAACAAAGCAGTCATGACTTTTGGC
ACGGTCTAACTAATAAATAGTTTAAAAAGCGTGGCACATACTTATTCTGC
TTCTGCAGTATCTGCTTACTCGAACAAGTGTGTCAATGATTTTCTTTTGT
TACCTTCGTTTTATGCTTCTTTGGGTGCTCATAATCTTATGCATCTATAA
TCAGTGTTATGCAATATGTGTTGCTTTCCTTTTAGTAAAAAGTCAAACAT
TTCCGTATCTTATACAAGTTACCTGATATTAATTGTAAAAATGAGAATAT
TTCCTAATGCAAATTTTACTAAACATCTGTCATTATGGATAAGATGATCT
TAGTTTGTTTGGATTTTGTTCTTTGTTTTTGTTGATGCAGACGGCAAGTG
TTTTGGATATCTAAGCAAATACTGCAGCTAATGATGGAAGATGCTATTGA
TGACTGGCTCTTGATGCAAATACATTGGCTCCGCAGAGACGATACAATTG
CTCAAGGAATTCGCTGGATCCAGGATGTAAGCTTCTAGTTGTTTTGTAGA
GATTTTGTATTTTTAACGTCATTTGAAAGACTAAAACACTAGATGGACTT
ATGACATCATGTTTATGAGAGTATAACAAATGAAAACCTGTTGGTAATAA
TCTGCTGAAATTTGGTTCTCAATTTAAAGACAGGAAAAGGTAAGAGTAAT
GGAAGTTATAGGAGTATTATGCTTCAACATGCCAGTATTGCACATTATGA
GAGTGAGTCATTTGAAGAGCGAAACTTGTAAAAGTCTGTGGAAAATTCCT
ATTTCAAGTATAATAAGCTCAGTCAACCGACCCTTGTGCAACTATTAGAG
TCAACACTCAACCATCACCTCCAGACTCACCTGACATGTTGTGACCTGTA
GGTACAGGTTGTATTAGCCTTAAGACCGTATATATAAGTGCTTGTCTCAC
ATGATTTAGAGAGAGACTGTTGTTACCATACGTGCAGTTGTAGCAGTAAT
GCTTCAGCATTCAAGTATTCTACACAATAAAGTTAGCTGAGTTGCTGAAA
ATTGTTGAAGTCTAGTACTGTAGTTGCAGACTAGGTTTGAATGGTTGAAC
AAGGTCAACATCATTTCTTCAGATAAAATTCACTGTTACAACTGCCAATG
GGTAGTCAAAGCATAAAGGACACCCAAGTGTGTGATGTTTGTGCCCCCCC
CCTCCCCCAAAAACCCACACACGCAAACACTAGTTTAATTAGAGCCGGTC
CAACTAAAAATCCCATGTACTGGCTAGCTTCACATGTTTCATATTTGTAA
AATTCCTGAACGCCAATATATGTTGATACAGCCCACACACTAAACACATG
TATGAATTCCTTTGTATGCCTTTTCTGAGGTATCATGTTTACTAACAGCA
GACTTTTATTTCAGGTTCTTTGGCCTGGTGGTAAATTCTTCCTGAAACTC
AATATTAGAAGTAAAGCAGATGACAATGAAACTAATGACATATCTTCGCA
AAGTACAAGCCTTTCAGCCAGCAGCAATACCTCTAAACCAGGTTCGTTTG
AGCTCCAGCTTGAGGCTGCTCGGCGAGCTAGTAATGTCAAGAAAATGATC
TTGAGTGAGTTGCTTTTCCCTCTGATGTTTTAA
Sequence Length:
12233
Sequence Checksum:
9f1b9fa7e5ce5f78276f33f7d37d2580
View location in JBrowse:
Cds:
>DCAR_003624cds ATGAAGGCCATGAAAACTATCGAAGATCTCATCGAAGAAGCGAAGATTCG AACTGTTTGGTGGGCCCTTTGTATATTCTCTGTCTCGTACTTCTTAACAC ATACAAGTAAATCAATGTGGATGAATGTTCCTATATCTATTCTCATAGTT TGTGGATTACGGATATTGTGTAATGAGGTTGAGTTCCGCTGGAAGGTCCG TAATATCCGTCGGCAGACCTATCTTTCCCACTTAGAAAAGAAGCAATTAT CTGTTAATGATTCTCGCCTTTCGAATTCCCCTCCACCTCCAAAATGGAAG AGAAAAATTGACTCTCCAGTTGTGGAGGCTGCGATGGATGACTTTGTAAA AAAACTTTTGCAAGATTTTGTTGTAGATTTATGGTATTCAGATATTACAC CAGATAAAGAGGCCCCTGAGCTTATACATGCAGTGGTCATGGATGTACTT GGAGAAGTGAGTGGTAGAGTAAAGGAAATAAACTTGGTTGAATTGTTGAC GAGGGATATTGTAGACCTTATAGGTAAAAATCTAGATCTATTTAGAAGAA ACCAAGCTGCTATCGGGATGGAAGTTATGGGGACGCTGTCTTCTGAAGAA AGGGATGAAAGGTTGAAGCATCATCTCTTGGCTTCTAAGGAGCTTCACCC AGCATTGATATCTCCAGAGTGTGAGTACAAGGTTCTTCAACGGCTTACGG GCGCGCTTTTAGCAGTAGCACTTAGACCACGGGAAGCCCAATGCCCTCTT GTTCGATGCATTGCCCGGGAGTTGGTAACTTGTTTGGTGTTGCAACCTCT CATAAATTTGGCCAGCCCTGCGTATATAAATGAGTTGATTGAGTATATTT TGACTGCTCTTAAAGATGTGAGCATTAAACAGATAGGTCTTGGTCAATCG CCCAATGTAGAGGGTCATAAAGGTGATCATGTCATTACTGGAGATCAACA TCATGTTGAAGCTGCCACAAATATAGCTACATCTTCTCAAAGTAAAGGGA CTGACATGACACTGTCCAGATATGAAACTGCAAAAGAAAGTGTATCAGAT GGTTCAGAAAATTCCATCACCAACACAAGTCATAATGAGGCCATGCATCC ACGATCTGCTGAATGGGCTAGAGTCCTTGAGGCAGCTACCCAGAGAAGAA CAGAAGTTCTTATGCCTGAAAATCTTGAGAATATGTGGGCAATAGGAAGA AATTACAAAAAGAAGGTTCAGAAACTTGCTGCTGCAGGAGGTCAGTCTCC TCTAATACAGGGGTCAGATTCAAGCAATGCACTGTCTACCAATTTGGATA AGGAAATATCAGCTCAGAAGGCTGAAGCATTCACAAGAATGGAGAATCAA CCTTTAACCCCGGCACATTCAAGGCCTCCGATAGATTCTCGACCAAGTAA TCAAATCAGTAGTGCAACCCTTAATACACCAACTCTGAACAAAGTAGTAT CTCTTAAGGGAAACCGAATTGTAAATGAAAGTGAGAATTCCACATCTTCT ATTGCTAGTGGAAATAAAAATAAGATGACTAGATCAAATAGCACCCCGGA TTTGAATACTGAACCAGTAATGAAAACTGATTCTATCTGCAAGAGTGGTG GATCAGTTATATCCGAGTTCTGCGATAAAGATCTTAGCAGCACGAGTCAA GCTACTAATGCAAAAAGTGCTCTAAATATGGTTTCATCTAGTGAGGGACA ACAGGCGGTGAAGCTAAGGTGTCGGGTTGTGGGAGCATATTTTGAAAAAC TTGGGTCAAAATCTTTTGCAGTTTATTCAATTGCAGTGACAGATATTGAT GGAATAACCTGGTTTGTTAAAAGAAGATACAGGAATTTTGAGAGATTGCA TCGTCAGCTTAAGGATATTCCCAACTATACTTTACATTTGCCTCCCAAAA GAATATTTTCTTCCAGCACCGAGGATGCTTTTGTTCATCAACGCTGCATT CAACTTGACAAGTATTTGCAAGATCTCTTGTCAATTGCTAATGTTGCTGA GCAACATGAAGTGTGGGATTTTTTGAGTGTTTCATCAAAGAATTATTCTT TCGGAAAATCCCCCTCCATGATGAAATCCCTGGCAGTCAACGTGGATGAT GCTATGGATGACATTGTACGCCAGTTCAAAGGGGTTTCAGATGGATTGAT ACGGAAAGTCGCTAGTCCAACTTCAGTACCTGAACCAGCTTCTTCGGCTT ATGGAAGGAATTTATCCTTGAAAGAAGATGAGATAAACAAGTTAAATCTG AGACGGGATACTGCAGATTCAATTAATAGTTTTTCTGATGAGGAGGGTGA TAAAAGTACCAACCTTCATGGTAAGGATTCAGGATATGATATACAAACTA ATGGTTGGCATTCAGACAATGAACTGAACTCAAAGGAATTTCCACCAAGG GTTGTTACACGTAGTGACGACTTTAGAAACATCTCTTCTGAGGAAAAAGC GTTTTCTACTCTGCAGTCTGAATTGTCAAGTCTCCGTGCTTCTCCCGGGG TGAAATCCCCATTAACTCCTGGACAACTGGACGATCCAATTGGAGTACCA CAAGAGTGGACACCACCAAATTTAAGTGTACCCCTGTTGAATTTAGTTGA TAATGTCTTCCAGTTAAAGAGAAGAGGCTGGCTAAGACGGCAAGTGTTTT GGATATCTAAGCAAATACTGCAGCTAATGATGGAAGATGCTATTGATGAC TGGCTCTTGATGCAAATACATTGGCTCCGCAGAGACGATACAATTGCTCA AGGAATTCGCTGGATCCAGGATGTTCTTTGGCCTGGTGGTAAATTCTTCC TGAAACTCAATATTAGAAGTAAAGCAGATGACAATGAAACTAATGACATA TCTTCGCAAAGTACAAGCCTTTCAGCCAGCAGCAATACCTCTAAACCAGG TTCGTTTGAGCTCCAGCTTGAGGCTGCTCGGCGAGCTAGTAATGTCAAGA AAATGATCTTGAGTGAGTTGCTTTTCCCTCTGATGTTTTAA
Pep:
>DCAR_003624pep MKAMKTIEDLIEEAKIRTVWWALCIFSVSYFLTHTSKSMWMNVPISILIV CGLRILCNEVEFRWKVRNIRRQTYLSHLEKKQLSVNDSRLSNSPPPPKWK RKIDSPVVEAAMDDFVKKLLQDFVVDLWYSDITPDKEAPELIHAVVMDVL GEVSGRVKEINLVELLTRDIVDLIGKNLDLFRRNQAAIGMEVMGTLSSEE RDERLKHHLLASKELHPALISPECEYKVLQRLTGALLAVALRPREAQCPL VRCIARELVTCLVLQPLINLASPAYINELIEYILTALKDVSIKQIGLGQS PNVEGHKGDHVITGDQHHVEAATNIATSSQSKGTDMTLSRYETAKESVSD GSENSITNTSHNEAMHPRSAEWARVLEAATQRRTEVLMPENLENMWAIGR NYKKKVQKLAAAGGQSPLIQGSDSSNALSTNLDKEISAQKAEAFTRMENQ PLTPAHSRPPIDSRPSNQISSATLNTPTLNKVVSLKGNRIVNESENSTSS IASGNKNKMTRSNSTPDLNTEPVMKTDSICKSGGSVISEFCDKDLSSTSQ ATNAKSALNMVSSSEGQQAVKLRCRVVGAYFEKLGSKSFAVYSIAVTDID GITWFVKRRYRNFERLHRQLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCI QLDKYLQDLLSIANVAEQHEVWDFLSVSSKNYSFGKSPSMMKSLAVNVDD AMDDIVRQFKGVSDGLIRKVASPTSVPEPASSAYGRNLSLKEDEINKLNL RRDTADSINSFSDEEGDKSTNLHGKDSGYDIQTNGWHSDNELNSKEFPPR VVTRSDDFRNISSEEKAFSTLQSELSSLRASPGVKSPLTPGQLDDPIGVP QEWTPPNLSVPLLNLVDNVFQLKRRGWLRRQVFWISKQILQLMMEDAIDD WLLMQIHWLRRDDTIAQGIRWIQDVLWPGGKFFLKLNIRSKADDNETNDI SSQSTSLSASSNTSKPGSFELQLEAARRASNVKKMILSELLFPLMF*