DCAR_003713 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_003713

Identifier:

DCAR_003713.gene

Locus Tag:

DCAR_003713

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_003713, is a part of gene, DCAR_003713.
The genetic_marker, MK005666 K3110, is located in gene, DCAR_003713.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_003713	DCAR_003713.mRNA	mRNA	DCARv2_Chr1:41322774..41331938

Sequence:

ATGTCGCTCTCTTCCGCCATATCTCCGTCATCTTACGCGGCCATCGCCGC
CGCTTCCTCTGCACGGACTCCCATTTTCAACAAGAAAAAGACGGCGGCGG
TTCTCTCTCCCCTCTCTCTTTTCCATCAGTCTCCCTCTCTCTCCAAGTAT
ATCTTCTCTCTCTCTCTCTCTCATTTTCTGTATCTAACATATTAAACTCA
TTGCCAAACTCAATTAGACCTAATTGTAATGTCATTTGTGTATTTTACAA
ACTCTTTTTAACAATTCCTCACTACGTAATGCATAGGATCTTATTCATTA
CTGTAATTATTCACTAGTCAATTGACTATCTACGCATATACTTATTTGTG
ATCGAAAACCTTACGAGGAGTCAGTTTGTTCAATCGTACTGATAAAGGAA
GTGTTGCATAAGTATCATTACTATTGGGGGTTTTCAATAATATATTAAGG
TTTTAGGAGAATTGGCTCGACAGTGATTATAGACATTTTTGTAAATTTTC
CGCTTCTGTGCATTTTTTTCTTTTAAGAGATTATTTGTGTTAGGTCAGTC
CAAGTATCTGGTCACTTTTTTACTTATACAGTACGAGCAAGTTTAATATG
TTGTACGTTATACTACTGGTTTATAATGATATGGAAACTAAATTGTTTCA
TTACTATTTCCACTTGTATTATGTTCTCCTTGCCAACTTTTATAGGTTAA
GAAATTAGTGGCCAGTTTAATTCACAACTTGACATTCTGCGTAGTGACTG
TAGTCACCTTTTTAAAACTTCATTACCCGATAAAATTTGAAAAGTTACAT
GTCATCTTAGTCCAAAACTGTATTTACTCGAGATTCTAAAAAAGTTGGAT
ATTGTATCTATTTCAGAACAGGTATATTTTTGCATCGGGGAAGAAAGGAG
TCGTCGTCGAAGTTTTACATTGCTGCTTCCGTTACAACTGCAGGTTCTCC
ACAAGTTTGTTATAAGTTGAACGTAGTTTTATTGTTTCTTATGATCTTTG
TTCATTTGATGTCTTATGTAAATTTTGCCAACAATTCATCTGCAGTTCCT
TCTCTCGATGACTCCGTTGAGAAGGTTCAGCTCCCCAGGGGTGCTATGTG
GTCTATTCATAAATTTGGAGGCACCTGTGTGGGAAGCTCTGAAAGGATCC
GAAATGTTGCAGAGATAGTTGTGGAGGATGATTCTGAAAGAAAGCTAGTT
GTAGTCTCTGCAATGTCAAAGGTCACAGATATGATGTATGATCTAATTTA
CAAGGCGCAGTCACGGGATGATTCTTATGAATCTGCGCTCGATGCTGTTA
TGGAAAAGCACAAGTTAACAGCATTTGATCTCCTTGATGGAGATGACCTT
GCTAGATTTTTAACTAGGCTGCAACATGATGTTAATAACCTCAAAGCAAT
GCTTCGTGCAATATACATAGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCGATATGTGTGTGTGTGCGTGCGCGGGTGCGTGTGTGTTTGGCAATC
TTATATTGAAGCTTGTCTTTTTAGGTGCGCTTTTATAATTAGGTTTTGGG
TTGGGCTGTGTGGGTGGGGTCTTGTGCGATGAGCCGATGACCTTTGTTGA
CGTCCTCAAGTAATTTTTTTTATGATACTCGAAAACCTTAAGGAAAATAA
CAGGTCACAATAAAGAATCGAATGGGAAATTAAATCCCAGTGCTCTGTTA
AGACAGACGTAGCGATAAATTAAGCACTTGATTGATTACTTGTTATTGGG
TAACACAATTGAGTCACTCCTGCTGAGTGCTATGCAACATTTCCACTTAT
TTTCCTTCTGTAATATTGTAGCATGCAAAAATTTGGCTAAAGCGCCACAA
GTCTACATCTTGCTTTTCAGTGTTCTCATTGATAAGGCTTGCCAAGTCAT
TTAGGATCTCACTGACAATTAGTTCTTCATATTATGCTCAGCAGTTTGTC
GAAAAGTACTAACTATTTATTTTAATGCAGCTGGTCATGCCACCGAATCT
TTTTCGGATTTTGTTGTGGGACATGGAGAGCTATGGTCAGCTCAGCTGTT
GTCATTTGTAATAAGAAAGGTAGTTTCTTTTGTTCCCGACCCTCACTTTT
TTTGCATGTTTAATAAATAACTTACATGGTTCCATGGTCTCCTAAATTTC
TCATCTACTGCAGAATGGGGGTGACTGTAATTGGATGGACACACGAGATG
TTCTTGTTGTAAATCCTGCTGGATCTAATCAAGTCGATCCTGATTATTTG
GAATCTGAGAAGAGACTTGAGAAATGGTTCTCCAGCAACCAGTGTCAGAC
AATTGTTGCTACAGGTTTTATAGCTAGCACGCCTCAAAATATACCTACAA
CTTTGAAAAGAGACGGAAGTGACTTTTCTGCCGCTATAATGGGTGCTTTA
TTAAGGGCTGGTCAAGTCACGATTTGGACTGATGTTAATGGTGTATATAG
TGCAGATCCTCGAAAAGGTTCGCTGGCCTTACTTTTGGTTTTCAGATCTT
TTATCACATAATACTCTCTTTTCATGGTACAGTGGATACATAATTCATCC
TGATATATAAATACTACATTTTGCGCTCTAACATTCTAGGATAACCTGAT
AACCATTTAGATTTTGAGTACTTTCTGAAATATGTACGAACATTCTAATT
TGCCAAAAATATGTTATGCAGTTAGTGAGGCTGTGGTATTAAAGACATTG
TCTTATCAAGAAGCCTGGGAGATGGTGAGTTCAAGTATCTTCTAATACCT
GTCAAAGTTGTAGTTTGATACCAACAAAATTTCTGAGATATATTGCATGA
CTGTGCAGTCATATTTTGGGGCTAATGTGTTACATCCCCGTACTATCATT
CCTGTGATGCGATATGACATTCCAATTGTAATAAGAAATATATTCAACCT
ATCTGCTCCGGGAACAATGATATGCCGAGAATCTGTAGGCGAAACTGAAG
ATGGGTTAAAATTGGAATCTCATGTCAAAGGATTTGCTACTATTGATAAT
CTGGCACTCATTAATGTTGAAGGGTGAGCTTGTATTAATATTTCTTTTAT
CCATCTACTCGATGTTGTAAGTGGATGGCATGTTTCTTTTTGTCATTCAC
CATGCAAATATTGTGTCAGAACTGGAATGGCTGGTGTTCCTGGTACAGCT
AGTGCAATTTTTGGTGCTGTCAAGGATGTGGGAGCTAATGTTATAATGAT
ATCTCAGGTTTCTGAATTCTTCAAAAGATCTACTTTTTACATTTGTAAAT
TTGTGCACAGTATTCATTTGCCGTAAAATGAAAACAGGCTAGCAGTGAGC
ATTCTATTTGCTTTGCTGTGCCTGAGAGTGAAGTGAAAGCTGTTGCTAAA
GCTTTGGAGGCCAGATTTCGTCAAGCTTTAGATGCTGGTCGTCTTTCCCA
GGTACACTATATGTTTAACGGCTAAGAGCTAAAAGTATATCATTGTTATT
TTGTGTTTAATTGTTGGGCTCCATGTAATACATAAATATATACCTATGTT
GTCTGGACTTGTAAGGTGCCAACTGCCAACATAAATATGGGTCCAAGAGT
TTTACTGTTATAAATATTTGCATATTTTTGGCCTAAAATATAGTGTTAAG
GTCCAGGCCATTTCCTGAGTTATCGAGTTTATAAACGGGCATGGAGACAT
AACTGAAGAGTGAGGGTGACAGTCTGACAGAGGAATGCAAGATAAGTTCA
TATAATATCTAGGTTTTATTAAACAACAAGCCATAGAAGAGAAGTTATTA
TAGTTTATGAGTACTTATTAAACAAGCCAACAAAACTCCAGCAAGAAGAC
AATAAATATATAATGTGGAATGTGGTTTTAATACACAATAGATATAATAG
GAACAAAATAGTAAATTGGTCCAATGTGTGATATTGGTCAAAATATTTTT
CAACTTGTCATTTTCCATGCTGGCAAATATATATTGTATAGATAATTAGA
GCATGAAACCTTTGTTTTAACGGCACCCTTTGGTGTAGACATCCGAAATG
TATATAAGTGGTAATGTTCGATAAATGTCTCTAAATTTCTTTAATTTCTG
AATCTTGAGTTTGACGCTTTCAAAACTTCCCAGGTTGCTATTATTCCAAA
CTGTAGCATCTTGGCAACAGTTGGCCAAAAGATGGCAAGTACTCCTGGCG
TGAGTGCTACACTTTTCAATGCGCTTGCAAAGGTTGGTAGGCATATATTC
GTTATTAGACTAGTCTATGGTTCCTATCAAGTTCATTGAGATTGGCTTAC
CAAGATATTTAAATGCACTTCATCATTTGGGTACCTATTGTGTTAATATA
ATGATACGTGATATGTTTAAATAGGTTTTTCATTTATTCCTGACCTGCTG
ATTACCCTTAACCATCAATTTTGTACTTATAACTATGCAGGCCAATATAA
ACGTTCGTGCTATAGCCCAGGGCTGTACAGAGTATAATATCACTGTAGTT
CTCAGTCGAGAAGATTGTGTGAGGGCTTTGAAAGCTGTCCATTCAAGATT
TTATCTGTCGAGAACCACAATAGCAGTGGGTATTGTCGGACCTGGATTAA
TCGGAGCTACTTTACTTGACCAGCTCAGGGATCAGGTAAATATGTATTTA
ACTTCACATCAAGTTCTTTTTTCTACTTCACTTTTCTCATCCTGGGTAGT
TTGTGTACTTGAAAATGTTTTAATATGTCGAGGTTTAATATCTGTTGTTG
GCTTGTCTCTTGTTTTGACATTTGATATCTTTGTGTATCATGAAAATATG
CTGTGTTAAATTTGATGTTTGCAACTTTAGTACCGCGTTTATGGGCTAGA
TATATACTCTTGAGTTAGGTTAAAGGCAAGCTAGCATTTTGTTAAATTAA
ATTTACTTATGAGTTACATTGGTTTTTGAAATTGATCGTTTTGTTTGAAA
ATTCTCTATCTACCAACTTTTTACGGCCAAAATAGCATGAATTATATGCT
AATCATGTATCAATTCTTAACGTCAGGCAGCAATCCTCAAGGAAAATTCT
AAAATTGATTTGCGTGTTATGGGTATCACCGGATCGAGAACAATGCTTCT
GAGCGAAACGTAAGTTGGACATTTTCATTGTTATATTTTTTTCCCATATA
CCAAATGTGACTTAACTTTATACCAATGCAAAAACAAAATCCGTAACATA
TCGCTGGTAGCTTATGTAAGGCTTATGTTAAGTATCTGATACGGGAACTA
AGAAAGGAGTAGCATTATAAAGGTCTATTGTGATGAAATTGCTCTCATAT
ACTATATTACAGGTCTTATTTGCTCTTTAATTGTCTCATTCTGTGACGAT
TGTGCTTTTTCCTTGGTCTTAGGGGAATCGATTTAAGTAGATGGAGAGAA
GTCCAAAAAGAGAAAGGGGAAACAGCTGACCTAGAAAAATTTGTACAACA
TGTGCGTGGAAATCATTTTATTCCAAGCACTGTTATAGTAGATTGTACAG
CAGACTCTGAAGTGGCAAGTCACTACCATGACTGGTTGTGTAGGGGAATT
CATGTCGTTACCCCAAATAAGAAGGCAAATTCAGGACCCCTTGATCAGGT
AATGTGACATGGATACCATGCAGTGATAACGGTCTAAAAATAATTAGATC
TATTGCTTGAACTTAGTCAAGTCAAATTATTACTGACCTATAGCCTCTAC
CTCAGGATTATGCACATATCATAATCAATATTTTGTTACTTCCATGTGTC
TTACCAATGGTTCATTCTCATGTCTGGGAATAAATTCACTTCAGGTTAAT
GAATCAATGTTTGAGCACCTCACCCAATTCATTTTTTGAACCCCAATTTC
AGTATTTGAAGTTGAGAGCTCTCCAGCGGCGATCCTACACACACTATTTT
TATGAAGCTACTGTTGGTGCTGGTCTCCCGATCATAACCACTTTGCAGGG
ACTTCTTGAAACCGGGGACAAGATATTGCGAATTGAAGGCATTTTCAGGT
TAGTTACACACAATAAAAAAATGGCAAATAAATTTACCAATTTGACCACA
TGAGCGTAAATTTTTTTGTACAAATATACAATGACTTCTACTTTTTTCTA
TTTGGATTAGTTAGCAATTTCTGATTTGTTGGGGCCATTAATTTTTACAA
TTTGTTGTGAAAGTCAGCATAGAGCGGTGACTAAATAGTCTTTCTCTTTA
GTGTGACTAAATATTGGGGATAACCTAGTGTTTTACTTTTAAAACCGAAG
ATGTTGGAGTCTTGAGTTTCGTCGGGATGCTGAAAAAAAAAAAATGTATG
CCAAGGCAATGCAATACCATCCTTTAAGCTATGTTTTCATAAGGGTTCTC
CTCAAATCTATTTCGAATGTTGATTTGGACAGAAGCTTGAGGCTTTAGTT
GGTAAGTTTGGATGTATATATGCAAGAACTTAAAGATTAGTACACAAATG
GATGTTTAATGGAGATTAATACTTAAGCTGTATAAATCCTAACATGAGCT
ATACATATATGTAATATTCATGCCCAATTTACACACCCTAACAGCTGAAT
TGACGGTCAATGTTAAGTTTAATTAAAGGAAATCATGTAAACAGACTGTA
CCTTTGAAGTCTCTAGTGAGCAAATTGAGAATGGAGAGCAATTAATGATG
CACTTGATATATTTGGACCCAAAGAATTAGGGTATTGATAACCCTGTTAT
ATTTATGTATACTATTTTTTAGTACAAAGTCTGGCATATATAAAAAGTAA
ATGGTTTATTCATGTTCCTGCTCCAACCCTGAAAGGGTTCTAACTCTAAG
TATATGATTTCTAAATGCAGCGGGACTCTTAGTTACATATTCAACAACTT
CAAGAGTACAACATCTTTTAGTGAAGTGGTAAGTGAGGCAAAAGCGGCAG
GGTATACTGAACCAGATCCAAGGGATGATCTAGCCGGAACTGATGTTGCT
AGAAAGGTGCTCGTTTATAATTAATATCAAACGTGAACTTTATTTGTTTC
CCTCTGCCTTGTACTAACCTGTGCGTTGTATGTGGTAGATTAGAATCTTC
TTTTATATTGAAGAAAGTATTGTAACTTACAGTTTCACAATGTTGCAGTG
TCTAAATACTTATCGATCAAAGCATAGTAGTTAAACTTGGTTGAATTTTT
TTGAGCCTATGAAACAGTTAGAATTGTAGGAGGTTGTATGCGAACCTAAA
AGAATGAAAGGGGGGAAGATAAAGAGAAATTCTTGTGAAAGGGTGATTCT
GTAAAAATAAGACGGGCCTTGCTCAAGTGGGTTCCTTTAAAGTTGTTTGG
TTAGTGTGGGTCTTATTTATGACAAGTTGGACTGCGACATTTGTATCTTT
AGTATATATGTCATATTTCAGAATTTTGACATACATAATTCTTAGAGTAC
TATTTGTCAGAGATATCAAGCTAGGTAAGTCTTAACCAACAGCATGGCGG
CCACCTCTTATACATGGAAAGAGGAAACTTTCACAATCTGAAAGGAATGT
TTACTTGTTATAAATGTTTCTAAGTTGTGGTCACCTAAGCCTCACCAGTT
ACTTGCTATATTTTGCGGGCTGTAATTTACATGCACTGTGAAATGAAGTA
ATATATCTGTAGCCTTATATGCCCTTTTATAATGCAGGTAATAATTCTTG
CTAGAGAATCTGGATTAAAGCTCGAACTGTCTGATATTCCTGTACAGAGC
CTTGTTCCAGAACCACTAAGGGTGAGGAATTTTTTAATTGTATTTTCGCA
TCTAATATAAAATATCTCTGCGTATATTTTAGAGCGTTAATAATATGCAG
CTTAAGAAAAAGCATTATAAAAGCAGTCCATTATGGTAGGAAAAAAATAG
AAGAATCATGAGTCCTACAGTTTTGTTGGCATGTGTTAAAATAAGAAAAG
TACATTGTACACCGGTACAGTATGAAAGATTTGATAATTTCTTTTGTTGC
TTTCCCTTGTTAAAATGTAACATTATTTTATGTAGAAAAGTCAAGTTATT
CTGACAATCAGATAAAACTGCTACTTATAGACACTGGAAAAGTTAAATAA
TACAGTAGAGTTTGATTTCCAAATGGTAGTGAGAGTATTAATCTCTTTGT
GTATCCTGTGGTGAATATTATATTGAATGCTATTGCCAATGTGTATAAAC
CTTTCTGGGCCAATGTGTATATCATGTATCTTGTTGTATATATTGATGCT
TTTATGTTTTTGTGATTATTTCTTAAGGATATTGCGTCAGCCGAAGAATT
TCTGCTACAGCTACCACAGTTTGATTCAGATATGACCAGAAAACGAGAGG
ATGCTGAAAATGCGGGGGAAGTGAGTTCTTACGCACACTTGTCAACTATA
CTATTTATACATCTATTCTTTATGCATTATTAAATAAACCTATTATCTAC
TAACTGTAAATATCTATTATGTATCACTACAATTAAAACCCAACTGAAGA
TTTGTAAAGCCCTTTTTCTGTTAAGGTCATCCTAATAATTTACAACTGTT
AATTATTCAATTTAAAGATAAGACATGTGTTAAAAACCTATTAGGTGTGT
GGGTCTTTTTCTTAAAAGTGTAACTTTTAAGTTTGACTTGCAGTTACATG
GGTTATATAACCTTGAATAAAAAAACAAGACAATCATACTTTGTTTTTTA
ACCTTGGTAATGATACATGAAAATTTATTTAGCATATTATGGGCCTGGCG
AAGTAGATATTTGTTTATGACCTAAAAAGTATTTGATAAATATCTGTGTG
AAATTGGGTCTGCAAGTCAATATGTTGCCAGTTTTGCATCTGAGTCACAT
ATCTTGTTATTAAAAGTAGAAATGCAATAATTTACTAGTTTGAATGTGAG
GAAACCGAATAGAAATACATATTATTGAAGTTGACACACTGGATTGAGCA
TGTTGTATGATGCATCTTATTATTCTTATATGATATTTATGGGATTTGTA
AACTTGAATTGTCTGAAGGTTCTAAGGTACGTTGGGGTGGTGGATGCTGT
AAATCAAAAAGGTGTTGTTGAATTGAAAAGATACAAAAAAGAGCACCCGT
TCGCACAGCTTTCTGGGTCCGATAACATCATTGCTTTCACAACTGAAAGA
TACAACAAGCAACCTCTAATAATTCGAGGTCCCGGTGCTGGGGCAGAGGT
GACAGCTGGTGGAGTATTCAGTGATATTTTGCGGCTTGCTTCATATCTTG
GTGCACCATCATAA

Sequence Length:

9164

Sequence Checksum:

0899d9a50612e342727df57843904378

View location in JBrowse:

DCARv2_Chr1:41322775..41331938-

Cds:

>DCAR_003713cds ATGTCGCTCTCTTCCGCCATATCTCCGTCATCTTACGCGGCCATCGCCGC CGCTTCCTCTGCACGGACTCCCATTTTCAACAAGAAAAAGACGGCGGCGG TTCTCTCTCCCCTCTCTCTTTTCCATCAGTCTCCCTCTCTCTCCAAAACA GGTATATTTTTGCATCGGGGAAGAAAGGAGTCGTCGTCGAAGTTTTACAT TGCTGCTTCCGTTACAACTGCAGTTCCTTCTCTCGATGACTCCGTTGAGA AGGTTCAGCTCCCCAGGGGTGCTATGTGGTCTATTCATAAATTTGGAGGC ACCTGTGTGGGAAGCTCTGAAAGGATCCGAAATGTTGCAGAGATAGTTGT GGAGGATGATTCTGAAAGAAAGCTAGTTGTAGTCTCTGCAATGTCAAAGG TCACAGATATGATGTATGATCTAATTTACAAGGCGCAGTCACGGGATGAT TCTTATGAATCTGCGCTCGATGCTGTTATGGAAAAGCACAAGTTAACAGC ATTTGATCTCCTTGATGGAGATGACCTTGCTAGATTTTTAACTAGGCTGC AACATGATAATGGGGGTGACTGTAATTGGATGGACACACGAGATGTTCTT GTTGTAAATCCTGCTGGATCTAATCAAGTCGATCCTGATTATTTGGAATC TGAGAAGAGACTTGAGAAATGGTTCTCCAGCAACCAGTGTCAGACAATTG TTGCTACAGGTTTTATAGCTAGCACGCCTCAAAATATACCTACAACTTTG AAAAGAGACGGAAGTGACTTTTCTGCCGCTATAATGGGTGCTTTATTAAG GGCTGGTCAAGTCACGATTTGGACTGATGTTAATGGTGTATATAGTGCAG ATCCTCGAAAAGTTAGTGAGGCTGTGGTATTAAAGACATTGTCTTATCAA GAAGCCTGGGAGATGTCATATTTTGGGGCTAATGTGTTACATCCCCGTAC TATCATTCCTGTGATGCGATATGACATTCCAATTGTAATAAGAAATATAT TCAACCTATCTGCTCCGGGAACAATGATATGCCGAGAATCTGTAGGCGAA ACTGAAGATGGGTTAAAATTGGAATCTCATGTCAAAGGATTTGCTACTAT TGATAATCTGGCACTCATTAATGTTGAAGGAACTGGAATGGCTGGTGTTC CTGGTACAGCTAGTGCAATTTTTGGTGCTGTCAAGGATGTGGGAGCTAAT GTTATAATGATATCTCAGGCTAGCAGTGAGCATTCTATTTGCTTTGCTGT GCCTGAGAGTGAAGTGAAAGCTGTTGCTAAAGCTTTGGAGGCCAGATTTC GTCAAGCTTTAGATGCTGGTCGTCTTTCCCAGGTTGCTATTATTCCAAAC TGTAGCATCTTGGCAACAGTTGGCCAAAAGATGGCAAGTACTCCTGGCGT GAGTGCTACACTTTTCAATGCGCTTGCAAAGGCCAATATAAACGTTCGTG CTATAGCCCAGGGCTGTACAGAGTATAATATCACTGTAGTTCTCAGTCGA GAAGATTGTGTGAGGGCTTTGAAAGCTGTCCATTCAAGATTTTATCTGTC GAGAACCACAATAGCAGTGGGTATTGTCGGACCTGGATTAATCGGAGCTA CTTTACTTGACCAGCTCAGGGATCAGGCAGCAATCCTCAAGGAAAATTCT AAAATTGATTTGCGTGTTATGGGTATCACCGGATCGAGAACAATGCTTCT GAGCGAAACGGGAATCGATTTAAGTAGATGGAGAGAAGTCCAAAAAGAGA AAGGGGAAACAGCTGACCTAGAAAAATTTGTACAACATGTGCGTGGAAAT CATTTTATTCCAAGCACTGTTATAGTAGATTGTACAGCAGACTCTGAAGT GGCAAGTCACTACCATGACTGGTTGTGTAGGGGAATTCATGTCGTTACCC CAAATAAGAAGGCAAATTCAGGACCCCTTGATCAGTATTTGAAGTTGAGA GCTCTCCAGCGGCGATCCTACACACACTATTTTTATGAAGCTACTGTTGG TGCTGGTCTCCCGATCATAACCACTTTGCAGGGACTTCTTGAAACCGGGG ACAAGATATTGCGAATTGAAGGCATTTTCAGCGGGACTCTTAGTTACATA TTCAACAACTTCAAGAGTACAACATCTTTTAGTGAAGTGGTAAGTGAGGC AAAAGCGGCAGGGTATACTGAACCAGATCCAAGGGATGATCTAGCCGGAA CTGATGTTGCTAGAAAGGTAATAATTCTTGCTAGAGAATCTGGATTAAAG CTCGAACTGTCTGATATTCCTGTACAGAGCCTTGTTCCAGAACCACTAAG GGATATTGCGTCAGCCGAAGAATTTCTGCTACAGCTACCACAGTTTGATT CAGATATGACCAGAAAACGAGAGGATGCTGAAAATGCGGGGGAAGTTCTA AGGTACGTTGGGGTGGTGGATGCTGTAAATCAAAAAGGTGTTGTTGAATT GAAAAGATACAAAAAAGAGCACCCGTTCGCACAGCTTTCTGGGTCCGATA ACATCATTGCTTTCACAACTGAAAGATACAACAAGCAACCTCTAATAATT CGAGGTCCCGGTGCTGGGGCAGAGGTGACAGCTGGTGGAGTATTCAGTGA TATTTTGCGGCTTGCTTCATATCTTGGTGCACCATCATAA

Pep:

>DCAR_003713pep MSLSSAISPSSYAAIAAASSARTPIFNKKKTAAVLSPLSLFHQSPSLSKT GIFLHRGRKESSSKFYIAASVTTAVPSLDDSVEKVQLPRGAMWSIHKFGG TCVGSSERIRNVAEIVVEDDSERKLVVVSAMSKVTDMMYDLIYKAQSRDD SYESALDAVMEKHKLTAFDLLDGDDLARFLTRLQHDNGGDCNWMDTRDVL VVNPAGSNQVDPDYLESEKRLEKWFSSNQCQTIVATGFIASTPQNIPTTL KRDGSDFSAAIMGALLRAGQVTIWTDVNGVYSADPRKVSEAVVLKTLSYQ EAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSAPGTMICRESVGE TEDGLKLESHVKGFATIDNLALINVEGTGMAGVPGTASAIFGAVKDVGAN VIMISQASSEHSICFAVPESEVKAVAKALEARFRQALDAGRLSQVAIIPN CSILATVGQKMASTPGVSATLFNALAKANINVRAIAQGCTEYNITVVLSR EDCVRALKAVHSRFYLSRTTIAVGIVGPGLIGATLLDQLRDQAAILKENS KIDLRVMGITGSRTMLLSETGIDLSRWREVQKEKGETADLEKFVQHVRGN HFIPSTVIVDCTADSEVASHYHDWLCRGIHVVTPNKKANSGPLDQYLKLR ALQRRSYTHYFYEATVGAGLPIITTLQGLLETGDKILRIEGIFSGTLSYI FNNFKSTTSFSEVVSEAKAAGYTEPDPRDDLAGTDVARKVIILARESGLK LELSDIPVQSLVPEPLRDIASAEEFLLQLPQFDSDMTRKREDAENAGEVL RYVGVVDAVNQKGVVELKRYKKEHPFAQLSGSDNIIAFTTERYNKQPLII RGPGAGAEVTAGGVFSDILRLASYLGAPS*