Resource Type:
Gene
Organism:
Name:
DCAR_003834
Identifier:
DCAR_003834.gene
Locus Tag:
DCAR_003834
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_003834, is a part of gene, DCAR_003834. |
| The genetic_marker, MK006511 K3955, is located in gene, DCAR_003834. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_003834 | DCAR_003834.mRNA | mRNA | DCARv2_Chr1:42330962..42341333 |
Sequence:
ATGGCGCAGGACGCGGTTGTGCGGCATGTGCCTCTTAATCCTTGCTGTGA
ATTGGTAACTTTTTCCAATTCCTAATTTTCATGTCATTTCCTGATGAATT
GATAATTATGGATTTGAAATGTGTAGTTACAAAAGAAAGAGTACAAGTTG
TCGCAGAAACTTGCCAAGTCGGAAGAGGGTCGCAATTTTCTCAAGAAGGC
TATAGAGATTCTCCAGGATAAAATCGCCAATTTTGAAGCTGAAAATGTCA
AGCTGAAGGAAGGTATGTATGCAACACACATCAATTATATTTATTCGTAA
ATGCAATTCATATACTTGACGGTAAATACTGATTAAGATTTAGCTTTCCA
TGTCATCATTATTATCCAATGCAAGAATTGTTTAAAATTTTATCCTTCAA
TTTTATATAATTTACAAGGGAATGCCAAATGTAAAAAAAAGTATTGTTTT
TCTTTTTTTTTTTTTTTTTACCCTTGTAGCTTCCATCTTTTTCTATTAGG
TTCTTGTATTTTGTATGACTTTGAGGTGTTGGTGGTTTGGAGGTATGCTC
CCTCAAAAAACTTCCTTTTTTGCAATGGCACTCACAATCGCCATTTTCTG
AGTCTCTTAATTTCATTAATATCGAAGCCACACTGTGATGAAGGTACACA
TAGAGACCACATGCACCACTTGAATGTCCAAAACAAGCAGCATTTTACAA
ACTAATGTTATATTTGAGTTGCATCGTTGATGTTTAGGAAATTGTTTGAT
TGATGAATTTACATTATTTTGTTATTTGATATACAAATCATATTATTGAT
TCTTGTCAATGAAATTGTTTGAATGATGAATTCACATTATTTTGTTCTAG
ATTTAACGTTATTATCTATTTACAATGCTTTATTGACTCCATATCTAGAT
ATGTTATTTGATTCCCTGATGAGTATTTTCTGATGTCATTATGGAATAAG
ACAAATGCTATATGTCATCAATTACTGTTAGACAATATGTAGGACTAGAT
TATTGGTGTTCAATTATATTGCATTGCAACTGATGCACAATGCCTTATCT
TTATTTTGAATTTTTGATTCAAGAACTAGAGCTGGCAAGTACAAAACCAA
AAGATGATGGAGAGAAGATAATCGAAGAATCAGCTAGCCGAGATACTTTG
GAGAATGAAATATCTGTATTGAGGTCTGAGATATCCTGTTTGAAGCAAAA
GGGATGTTCAGGATCTAAAGACATGGATGAGCAAGTTGCAGGTCTTCAGA
CACGCGTCTCTGAAAGGGAAGAGGAGATATCTATTCTCAAGGAACACCTT
GAGAAGGAGAGAACGAGAGCTGAGAATGAGAAGAAGAGGGCTGAGAGGGA
ATTGAAGATAGCAAATGAAGCACTGCAATCAGCCAAGGCAGATAAGGCCA
GGGCTGAAAAACTTCAGGCAGACAATGAAAGAGAGCTGAAAATGAATGAA
TCCACTATTCGAAGTTCTTTGGAGAATGAGATTTCCTCACTAAAATCTGA
GATAGCAGTGTTGCAGCAACAAACTGTCTCAGGCTCTCAAAATGCAAACA
AAGAAGCAGCTCTTCTTCAAGAAAGTGTCTCTGAACATAAAGCAGAAATA
CATCGGCTCAAAGAACTTCTTCAGATTGAAAAAAATTGTGCAGATTTTGA
GAAAAAGAAAGCTGAGGAAATGAGGAAGAAACTTGATGATGAAAAATGTC
GGGCAGAAAAAGTGATTTCTGAGAGTAAAACAGATTTGAGAGTAGAAGAA
TCAGCTGTCCGAGTTTCTTTAGAAGATGAAATCTCTTCACTGAAGTCACA
GATAACACCTCTGCAGAAACAGACTGTTTTGGGAACTCAGGATGTAAACA
AGGATATGGTTCTTCTTCAAGACTGCATTTCCGATAAGGATAAAGAAGTT
AACAGGCTCCAGGAGCTTCTTCAGATAGAGAAACATAGAGCAGATTCCGA
AAAAAATAAAGCTGAAGAGGAAAGGAAGAAAGTTGATGAGAAGAAGGTTT
GGGCAGAAACAATGATTGCTGAGAAAGAAAGTGAGATAATATTGAAAGAA
TCAGCTGTACGACTTCCTCTAGAGATTGAAATTTCTTCCCTGAAATCTCA
GCTAGAGCTATTGCAGCAACAAATTGTCTCACAAGCTCAAGATGTGAGCA
AGAACTCGGGAGCTCAAGATGTGAACAAGGAAACAGAAAGGCTTATATCT
GATAAGGAAACAGAGATAAGTCAGCTCAAGAAGCTTTTGCAGAAAGAGAA
AAAAAGAGCAGATTCTGAGAAGAAAAATGCCGAGACTGAGAAATGTAGGG
CTCAAAAAGTGCTTGCAGATAGGGAGAGAGATTTGAAAGAAAAAGAGCAG
GCTGTTCGGCTTTCTCTGGGTATTGAAATCTCTGCTCTAGAGTCTCAAAT
ACATTTGTTGCAGAAAGAAATTGCAGTTCGAGATGAAAAGAAGGAAGTAA
ATCTTTATCAATCACTTGTCTCTAAAAAGGAGGCTGAAATTAATAAGCTC
AAGAAACTTGTTGAGAAAGAGAGAAAGAGAGCAGAATGTGAGAAGAAAAA
ATCCGAGGCAGGAAAGAAGAAAGTCAATGAATTCCAGAAGATTGCGGACA
CAGAAAAAACTAGGGCTGATGAAGAAAAGAGGCTTGCGGATATTGAAAGA
AAAAATGTTGAGGAGGCTAGACTGCAGTTGGAGATTTCAAGGGCTGAAAT
TCACGATTTAAGAGCAAATTTGAAGTCGGAGTCATTGAAAGTTTTACAGG
CAAATGATAATCTTGAGATAGAAAAACAAAAGGTGGTCAAAGAAAGACAA
CGGGCAGATATGGAGATGGCTAAAGCTGAAGAGCAAAGTAAAACTTTAGA
AACCACGAGGAGGGAGATTGTAGAGGAACGTACTCGTGCTGATTGTTTAT
CTCTGCAGTTGGAAGAAGATAGGGGAAGGCTTACTAAATTACGGGAAGAA
ATAGGTGAACAAGTGTCCTCCCAAGATACAGGGAAGGATGCTGGCGACCT
TTCTGTTGATATAACTAGCATAAAGCTTCTGAAAAAAACATTAGAGCTTG
AAAGAATGCAAGCAAAGCATGCAAAAGAAGTTGCTAGTTTCGAAAAGGAT
CGTAATATTTTACTACAACAGGAAATTCGTCGAATAAAGGAGGCGTTTTC
CGGTATTGTTGATCATCTGGACATACTAGATAAGTGTTCCTCACACCGGG
ATGTAGGTATAAATGACCTTGAAAAGGTTAGTTCATATCTCGTTGGCTAT
TTTTCTGATTCTTGTTTCTTTTGTAATTTTATTATGCTTGTTTGTTCTTT
TGAGGCTATGTAGATGTCATTAATTGATCACCAAGAACAAAAGTTTGATG
ACACTCTTCTTATATTCTATACTGGTTTTCCCCTCCTCAGAAGCAAGGTT
GCTGTGTAGTTGATATAGGGAGTTCAACATAGGCTTTTCAATATAATGAT
TGGGTAGGTCATTTAAATGCAGCACACTCGTCATTTTCTGAATAATGAAT
TTTTCTTTTCTTAATTGTACTAATATAGAAACCATTTTACACCAGGTAAG
TGTACAATGTTATAGATAACATCATAACATATGCATTGGTCAGCTATTAG
AATGAGAAGTTCTTAGATTTTTCTTAGCATTTTACTTTTATTTATAAACT
TTTAGACTTAACTTTATCTAGCTTTCTTACCTTGAAGCATGCACATATCT
TTTGTTAATGTTTATTTAACGATAAGGGATCACCTTGCTTGCAGAATTCC
AATGTTTCAAGGAGTCGAGGTTTAAAAAGAAAATTCATGGATGAAGAATT
ATGTCAGGTACAACACCATAATGGAAATGAACTTATGAAGTCTAGTTCAC
CCTTGGATGCTTATGTTACCCACAAGCATCACAAGCAATGTAGTGCACCT
TTACTTTCATCTAAAGACTGTACTGAACCCCTATCAGGTATTGGCTCTAA
AGCGATGCCTCTGCTTGGAGGTACCAAACAAGCATTGTTAAGAACGGCAA
ATTCCAATATGGCATCTTTTTCTGATAAAGCGTTACTGGGATCACAGGAA
GGATGGGCCTTATCTGTTGGTGAATCAGATAAGTTGGCAGAGGGGGGAAT
AAACATGCAACTTACTGTCCCAGGGTCGTCTAATAATATGAGCAAGCCTA
TGCACAATAAAATATTTGCGCCGTTGGATGAGAATAGCGTTAGATGTCCT
CTTAGAATCAATGCTGTTGTGGATGAGGTTGAACTTGATAGAGATAGAAA
TAGGAGTCTCGATGCTGTTGAATCGTTTGAATATATGTATTATGAGGGTA
AGAAGTGGTGTCGACAAATAACCGAAAACGTATCTGTGCAGCAGGATATG
CTGGAATGTAGCGTAGAAGGCGTGCCATCTAATATAAATTACGCTAATCA
AGAAAGGGAACATTCAGTTTTTGTAAAAGAAATAGCCATGTCCAACAATT
TGAAGACATATTCGCACCCCACTGATTCTCGATCAATGTGTGATGCAACA
GGGACGACTCATGCATGCAATGAAGAAACTGGGGATGCTAGCAGGAATTA
TTTGTGTAGTATTGATGAAGTGGAAGATGGTGACTATCTTAAATTGCTTT
CCTTAGATAATCCTCTCGATGAAGAAACTTATCGCATGGCGAGGGAGAGG
CCCTTGTCGCCAACTCTTCCTGAGATAGGCTCTTTAAGTGTGGGAGCACA
TGAAACAGATGACAATGACTCCATTAATGCTGCATCACCACATAATGATA
CCATGGTGCCATTTTGCAGTGCTGATGAGGAGATTGATTCAAGTAAATTA
AATGCCTATACCTCCGGGACTTGCCATGTTCTGCCATTTCCAGAGAAGGT
TGGTGTCACTGGTTTGAATGTGACTTCGGAAAATAATGACACGTTTCTTA
CAAGTGATCCAGGCAATTTAGGCCAGTCATTTTGTGGTCATAAAGGGCTC
AATGCTGCAAGTGGAAGTAAACCTAAGCCTGCTTGCAGTCCTTGCTATAT
TGTTATATTTTCAGATATCACCAGTAATAACAGCATTTCTAAGATATCAT
CTGCCACAAGAACGTGTCTGGCCCAGTGCTCTATGCTGCCTCAAACAGAT
CATGTGGTTCAGGTGATGTCTACTCTTTTGAAGGTTGAAGGTCTTCTATC
CAGGTAAATGATCCATTCAGAATACATTTTCTACTTCTCTTCTACAATTT
TCTTTAAGTTACATCCTTTTGTACCTTTCCGGTCGTTTTAATATGCTGAC
AGAATTTATGTTTCTTCTTAGAAGTCAAATTCTTTTTATGCAAACAGAAG
ATTGTATACTCCCGATGTTGCATATTTTAAGGTGTCAGCTTTCATATTCT
GGGAAAAATTACTTCATATCGAGAACAGGATCTGGGTCCTCTACACGAAG
AAATTTAATATGTTGCTAGTATGGGAGATTTGGTTAAATGTACTGAATAA
GATGAACAAACAGTTGCAATCGTCGATCAAAGAGCACTGATATAGGTTAT
AACAATATTGAATTTGGCAAAACAGCTTTTCTAAGATAAATTAATACTGT
ATTTGTTTGTAATTTACTTAAAACTTAAATTTGATAACTTTGATTAGATA
CCTATTACCTAGATCTTTTGTATTGATACGTCATGTGCTGCAGACTTTGA
CTTGGTAGTTGGTACACTGCCACACATGGTAAAATCTGGTAGACTGAGGG
ATTTGTATCACTGCTTGTATGAGAATGTTCTCACATTCTACATGCAATGA
TAATACTTGCAAAGAAGATGTATTAGTTAAACAAACAAGCTCCTTGTCTC
TGAAAATCCAAGATTGAAAAGCGATTATTAATCTAAGCTAGAGTATTGAT
ATTTGTGCAACTGAAATTACAAAATGAATATTTGGTTCTGTTTTAATTAG
GTTGGACTACTTGATTAATTAAATGATGATTGTTTTGCTTCTTTGATAAT
ATATCTAGGTGTCAGGGTAGTTTTCTTAACTCTGTTTTAATCTAATTCTT
CAGGGAAATGGTATGCGTGTTCTTTTCAATGTTATTGCGAAGCATTCCTG
AGTGTGCATTGGAAGACTTCAAGAACCTCGCTGATGGGAGCTTGGTCCGC
TCCTTTGAAATATTTGCTCAGAAAGTGCACTCAGGTCTTTTGCTTCTATC
CTGTTTTTTGATATTTGATTTCTAATTTCTTTTCTTTATGCTGAATTTCA
TTTGTATTACGTAATTCGTAAAAAGAAAAAAAAAAAAATCTTTGTTGCAG
TGATGGATGATTTAGAGACAAAAAGTGTTGATGAATTATTGAACTTGGAC
GAGCTTCTTAGCCTCATTGAAGATTTTCTAATTCATAGAAGAGTTGTACA
TTGTGATGTATTGTCTGAGTCGTTGGCTGTAAATGATCCTAAACTTGACA
ATAATGCAAGTGGAAGGAATATGCTATCCTTTCAAGCTGCTTCAGATCAA
CAGTTGATTAGTGCATCCTTAGTACTAGCTTCTATATGTTTAGCATTTGA
TCATATTGGTGTTGTATGTGAGACCTCATACAACATGTTGAAAATGCGAA
GAATTGACTCATCGACACTCGCTATTCTTCATGTTTTTGCATATATCTCT
GGAGACAAGTACTTCAACAATTGTGACTACAGCTTATCCATGACAGTAGT
AAAATCTTTAGTTAATTTTTTAGAGAGGGAAATGTCATCGATTAGCGCGC
CACAAGTTGGGTTTCCTCGGTGCAAAAATTGCCCATATTCTGGGAATGCA
ATTCCCATGGATATAGTAGTTTCACTGCTCATAAAAAAACTTCATAGCTA
TGTCTTATCGAATGTCTCATATGAAGATCTGAGGGAAGCAACTGTTTACA
TGAATTATGAAGCTCCGATTGGCAGTGAAAACAGAGAACCAAGTTCAGGT
GATGGAGAAAACCCGCAAGTCCAATGTCATAAGTTTGATGTCCCCTGTTC
CCAGAAAACAAGAATGTCTACTTCCTGCAGGACCCTGTTATATTTGGGCG
ATGTCCTGTCATTACTTGAGCTGGTAGCATCTATCATGGTAAAGTTCACC
CTTTTTTTATTACAATTATTATTATTGAAATTACTGTTGCGGAATTTGCC
TTATTAGTGTATGATTATCTAACTGACCTGTTGGTAGGTGTTTGTTTTTA
CCAGACTTGGCAGCCATCTGAATATTGTTTGCCACTAAATGTTTGATATA
TAGATTACTCTTTAAGTTAATACCTTTTTGGAACATCTGCACAATCTGAC
ATTTGAGATGATTTTTTGGCAGTATACTGAAATTCTTAGTATACCCATTA
GCTCTTGACAGTGCATTCTTGAAATTGTTCAAGTGGACCTCAGATGTTCA
TTGTAAATTTGGTCGCTAATAAACATGTTTGATCTTTGCTTCTTTGCATG
TTCGAACAAGCAAGATAACTTAAATTTCTCTGAGAGGAAGTGATGGGGAA
TCTTTGGATCTCAGTACTGTACTTTTTTCCTTTGGGGATCTTAGTTTTTA
TGCTTTTTCAGTTTTTTTTGCTCGCAATGAACATTCTATGCACGCACTGC
TCCAGAGATCTGTAGATCAGAGAGATGCTTGGTGCCTTGAGTTGTGTGTT
GGCTGTCTTTTAATCACGTAAAGCTATGTCTCACACATTAAGCAGGGCTC
AGCTGTAAATTTTTTGAAAGTTAAACATAAAATTACCAAAGAAGATAAAG
CAAAGTTAATGGAAGGGGGGCCTAGGACTTCAGAACAATTGTTCTATTGG
TGAGAGTGATGCCTTAATTGGTGAGATTTTGGGAGAGAGAAGTAATTTCC
AAGATTCCGTTTTCCGTGTTATTCCATATTTTAACTACATGGTAATCTAA
TCTATTGAGTCACTATTTTGACTTATAATGCCAAATTTATTGTGTTGATC
TTAGATGCTTGAAATTATCTATTATGATCTTTCATCCTACAGCTTGTGTG
GTGGTTTATATGTTCATCACTGTCTGAACTTGCTTGTACTACTACAACAC
AAAAAGACAAACTATTGAAGACATTATTGTTGATGTCTCTTTCTCAAATT
TGGTGCTAGTCTTTCGATCCTAGTTGTTTAACCAACATATCTGGTGATGC
TTCCAATATAGGGAACTATTGAGATCTGAAGATCTTACTGCAACTTAACT
AACATTTGAATTTCTTGTTTTCTTTTTCTCTCTTGAAAACAATAGAACTT
TTCCGCCTTGGCTTCACTTGACATATCTGTTTTTCCTCTCGCTTTTCAGA
ACTGGAGTTGGTCGTTCACAAATATTGTTCGGAAACTTCTGGAGATACTT
GATTCCTGTGGCATTGAGAAGCTTGTGCCTGCTATCGTTGTTCTACTGGG
CCAGTTGGGGAGGTAACTTTGTTTTTTTTATGCCTCTGGTTAAAAGACTT
TTTTTTTTTTTTTCAATCTAGATTTTACGATTGCTTGTTTGGTCTTTTTT
CGTACTACATAAAAACAGTTGCAACTTCTGCTTAGTATTGGGATGCTATG
TCAGAATCCTTGTCCGCTGTTAGATGCCATCCTGATGCCTACAAAACTGA
TATGCAATATCCTTCAGATTGTTCCTCTAATTAAGGAGTCGTTTGGTTGA
GTGGTATCAGGCATCATATATGGGTATAGAATCAAGTATCAACCAAAACC
ATACCTCGTGTTTGGTTGAACTTTTTTTATTCTCATATCCATACCTCAAA
CACCCATGATATGAGTTTTGGAAATCCAAGGGCAGAGGTGGGCATGAGAA
GGTGGTAAAGGTATCATTTTCATTTACAAATAAAAAATATATTTTCATTT
ACAAACAAAAAAAAAAGTACAATTTTTCATCTAAAAAATTAAAATAATAT
AATCAACAACATAATATTTAAAATTAAACAGATTCATTCCAACACTCAAC
CAAACACATGATATCAGAAATGATACCTTAACCCCGTACGACCCTAACCC
GATTCCCGATTCCAACTCCATACCACTCTCCGAATGAAATGACCCCTAAA
TTTTTTCTACTTAAACCACTTGGAACTTACACTACTAATTATTTTTACTA
TCCTTTCATGTTTCACCGGGATTTATGGACTCAAAAATGTTATCAGTTTA
ACATGGTTACTATAAGTCTTCTCTCTTATCGTCTTATCGTCGTGTTTGTT
ATAGAGACCTTTAGAATAGTATAAAAAGAACAGTATATGTTTTTTCTGTA
AAATAAGTTGTATACTGTTACCAATGAAGCTCGACCATGATTGGTGTTTA
TATATTACTAGCTTAAAGCCTGTTTATTTTTTTTAAATGGTTTGTTTTTT
TAAGTTTTTTAATTATTATATTTAAATATTTTTTTAATAAATTTTAAATA
GAATTAATATAGCTGTCAGGATTTTATATTTATTTTTATCTTTAAAATTA
ATATTGTAAAAGTTAAAATTAGTATGTTATTATTGGTGGGAATCGAACCT
TAGGCATTTGTATGAATTTCTTTTAGTATTATATTTATCGATTTACGTCA
ATCTTAGTTGAAAATTTTGACGGATGTGATTGAAACGAGAAACAAAAAAT
GAGGGTACCATACTGAACTTCAAATAATACTTAGGTTCGATTATTATAGC
TTAGTATAGATGAGGTGCATGCCAAGATTCAGCCAAGGAATAGATCCCAA
TCCCTTCAGTTTATATATTTTCTAGTACTATCTAATAGTCTTTCATATAA
TTGCACACCAAAGTTACCACTTTTACCCTTTAAATATCATTGGTTTGACT
TATTAATGAACAGTGTCAGTCCTATCTAATAGTCTTTCATTTCTTATAAT
TGCACATTAAAGTTGCCACTTTTACCCTTTGAATATCTTTGATATGAGTT
ATACATGAACAGTATCAGACTGACCATCTTAAAGTTACCTTCTCATTTAG
AAATAATCTTCAAATTTTTCACTCCTTCATGTAACACAACCTATTGTAAT
ACAGCTGCCTGGAAAAGGAATCCAAATTGTGCAAATATCTCTTGTTTGTA
TTATGATGACGTTTACTATAAAATATACCGTTTGTAGGTTTGGTGTTGAT
GCAAGTGGGTATGATGATGGTGGAGTTGAAACCCTTCGAGGTCGATTGTC
TTCATTCCTGCACCAAAAGGCCTCGGCTGTGACAGGATTACCATTTCAAA
TAGCAACTGTGACTGCTTTACTTGGACTTGTTCCCATCAGGTTTGAAGAA
CTTTTTAAGAGTAATAGCGGGCTTTCGGAAGTAGTTAAAGATCCTGGTCC
TGCTGATTGTATAAGGAACTGGTTTTCTTCACTGAGCAAGGAACAGCAGT
CCTTATCAATCAGACTTTTGCTTAATAATGTAGCTAGTTTGAGAATGGAT
TGTGCTCTGCTACAAGCGTAA
Sequence Length:
10371
Sequence Checksum:
1eec28112d6cd239b7001da4b105b37f
View location in JBrowse:
Cds:
>DCAR_003834cds ATGGCGCAGGACGCGGTTGTGCGGCATGTGCCTCTTAATCCTTGCTGTGA ATTGTTACAAAAGAAAGAGTACAAGTTGTCGCAGAAACTTGCCAAGTCGG AAGAGGGTCGCAATTTTCTCAAGAAGGCTATAGAGATTCTCCAGGATAAA ATCGCCAATTTTGAAGCTGAAAATGTCAAGCTGAAGGAAGAACTAGAGCT GGCAAGTACAAAACCAAAAGATGATGGAGAGAAGATAATCGAAGAATCAG CTAGCCGAGATACTTTGGAGAATGAAATATCTGTATTGAGGTCTGAGATA TCCTGTTTGAAGCAAAAGGGATGTTCAGGATCTAAAGACATGGATGAGCA AGTTGCAGGTCTTCAGACACGCGTCTCTGAAAGGGAAGAGGAGATATCTA TTCTCAAGGAACACCTTGAGAAGGAGAGAACGAGAGCTGAGAATGAGAAG AAGAGGGCTGAGAGGGAATTGAAGATAGCAAATGAAGCACTGCAATCAGC CAAGGCAGATAAGGCCAGGGCTGAAAAACTTCAGGCAGACAATGAAAGAG AGCTGAAAATGAATGAATCCACTATTCGAAGTTCTTTGGAGAATGAGATT TCCTCACTAAAATCTGAGATAGCAGTGTTGCAGCAACAAACTGTCTCAGG CTCTCAAAATGCAAACAAAGAAGCAGCTCTTCTTCAAGAAAGTGTCTCTG AACATAAAGCAGAAATACATCGGCTCAAAGAACTTCTTCAGATTGAAAAA AATTGTGCAGATTTTGAGAAAAAGAAAGCTGAGGAAATGAGGAAGAAACT TGATGATGAAAAATGTCGGGCAGAAAAAGTGATTTCTGAGAGTAAAACAG ATTTGAGAGTAGAAGAATCAGCTGTCCGAGTTTCTTTAGAAGATGAAATC TCTTCACTGAAGTCACAGATAACACCTCTGCAGAAACAGACTGTTTTGGG AACTCAGGATGTAAACAAGGATATGGTTCTTCTTCAAGACTGCATTTCCG ATAAGGATAAAGAAGTTAACAGGCTCCAGGAGCTTCTTCAGATAGAGAAA CATAGAGCAGATTCCGAAAAAAATAAAGCTGAAGAGGAAAGGAAGAAAGT TGATGAGAAGAAGGTTTGGGCAGAAACAATGATTGCTGAGAAAGAAAGTG AGATAATATTGAAAGAATCAGCTGTACGACTTCCTCTAGAGATTGAAATT TCTTCCCTGAAATCTCAGCTAGAGCTATTGCAGCAACAAATTGTCTCACA AGCTCAAGATGTGAGCAAGAACTCGGGAGCTCAAGATGTGAACAAGGAAA CAGAAAGGCTTATATCTGATAAGGAAACAGAGATAAGTCAGCTCAAGAAG CTTTTGCAGAAAGAGAAAAAAAGAGCAGATTCTGAGAAGAAAAATGCCGA GACTGAGAAATGTAGGGCTCAAAAAGTGCTTGCAGATAGGGAGAGAGATT TGAAAGAAAAAGAGCAGGCTGTTCGGCTTTCTCTGGGTATTGAAATCTCT GCTCTAGAGTCTCAAATACATTTGTTGCAGAAAGAAATTGCAGTTCGAGA TGAAAAGAAGGAAGTAAATCTTTATCAATCACTTGTCTCTAAAAAGGAGG CTGAAATTAATAAGCTCAAGAAACTTGTTGAGAAAGAGAGAAAGAGAGCA GAATGTGAGAAGAAAAAATCCGAGGCAGGAAAGAAGAAAGTCAATGAATT CCAGAAGATTGCGGACACAGAAAAAACTAGGGCTGATGAAGAAAAGAGGC TTGCGGATATTGAAAGAAAAAATGTTGAGGAGGCTAGACTGCAGTTGGAG ATTTCAAGGGCTGAAATTCACGATTTAAGAGCAAATTTGAAGTCGGAGTC ATTGAAAGTTTTACAGGCAAATGATAATCTTGAGATAGAAAAACAAAAGG TGGTCAAAGAAAGACAACGGGCAGATATGGAGATGGCTAAAGCTGAAGAG CAAAGTAAAACTTTAGAAACCACGAGGAGGGAGATTGTAGAGGAACGTAC TCGTGCTGATTGTTTATCTCTGCAGTTGGAAGAAGATAGGGGAAGGCTTA CTAAATTACGGGAAGAAATAGGTGAACAAGTGTCCTCCCAAGATACAGGG AAGGATGCTGGCGACCTTTCTGTTGATATAACTAGCATAAAGCTTCTGAA AAAAACATTAGAGCTTGAAAGAATGCAAGCAAAGCATGCAAAAGAAGTTG CTAGTTTCGAAAAGGATCGTAATATTTTACTACAACAGGAAATTCGTCGA ATAAAGGAGGCGTTTTCCGGTATTGTTGATCATCTGGACATACTAGATAA GTGTTCCTCACACCGGGATGTAGGTATAAATGACCTTGAAAAGAATTCCA ATGTTTCAAGGAGTCGAGGTTTAAAAAGAAAATTCATGGATGAAGAATTA TGTCAGGTACAACACCATAATGGAAATGAACTTATGAAGTCTAGTTCACC CTTGGATGCTTATGTTACCCACAAGCATCACAAGCAATGTAGTGCACCTT TACTTTCATCTAAAGACTGTACTGAACCCCTATCAGGTATTGGCTCTAAA GCGATGCCTCTGCTTGGAGGTACCAAACAAGCATTGTTAAGAACGGCAAA TTCCAATATGGCATCTTTTTCTGATAAAGCGTTACTGGGATCACAGGAAG GATGGGCCTTATCTGTTGGTGAATCAGATAAGTTGGCAGAGGGGGGAATA AACATGCAACTTACTGTCCCAGGGTCGTCTAATAATATGAGCAAGCCTAT GCACAATAAAATATTTGCGCCGTTGGATGAGAATAGCGTTAGATGTCCTC TTAGAATCAATGCTGTTGTGGATGAGGTTGAACTTGATAGAGATAGAAAT AGGAGTCTCGATGCTGTTGAATCGTTTGAATATATGTATTATGAGGGTAA GAAGTGGTGTCGACAAATAACCGAAAACGTATCTGTGCAGCAGGATATGC TGGAATGTAGCGTAGAAGGCGTGCCATCTAATATAAATTACGCTAATCAA GAAAGGGAACATTCAGTTTTTGTAAAAGAAATAGCCATGTCCAACAATTT GAAGACATATTCGCACCCCACTGATTCTCGATCAATGTGTGATGCAACAG GGACGACTCATGCATGCAATGAAGAAACTGGGGATGCTAGCAGGAATTAT TTGTGTAGTATTGATGAAGTGGAAGATGGTGACTATCTTAAATTGCTTTC CTTAGATAATCCTCTCGATGAAGAAACTTATCGCATGGCGAGGGAGAGGC CCTTGTCGCCAACTCTTCCTGAGATAGGCTCTTTAAGTGTGGGAGCACAT GAAACAGATGACAATGACTCCATTAATGCTGCATCACCACATAATGATAC CATGGTGCCATTTTGCAGTGCTGATGAGGAGATTGATTCAAGTAAATTAA ATGCCTATACCTCCGGGACTTGCCATGTTCTGCCATTTCCAGAGAAGGTT GGTGTCACTGGTTTGAATGTGACTTCGGAAAATAATGACACGTTTCTTAC AAGTGATCCAGGCAATTTAGGCCAGTCATTTTGTGGTCATAAAGGGCTCA ATGCTGCAAGTGGAAGTAAACCTAAGCCTGCTTGCAGTCCTTGCTATATT GTTATATTTTCAGATATCACCAGTAATAACAGCATTTCTAAGATATCATC TGCCACAAGAACGTGTCTGGCCCAGTGCTCTATGCTGCCTCAAACAGATC ATGTGGTTCAGGTGATGTCTACTCTTTTGAAGGTTGAAGGTCTTCTATCC AGGGAAATGGTATGCGTGTTCTTTTCAATGTTATTGCGAAGCATTCCTGA GTGTGCATTGGAAGACTTCAAGAACCTCGCTGATGGGAGCTTGGTCCGCT CCTTTGAAATATTTGCTCAGAAAGTGCACTCAGTGATGGATGATTTAGAG ACAAAAAGTGTTGATGAATTATTGAACTTGGACGAGCTTCTTAGCCTCAT TGAAGATTTTCTAATTCATAGAAGAGTTGTACATTGTGATGTATTGTCTG AGTCGTTGGCTGTAAATGATCCTAAACTTGACAATAATGCAAGTGGAAGG AATATGCTATCCTTTCAAGCTGCTTCAGATCAACAGTTGATTAGTGCATC CTTAGTACTAGCTTCTATATGTTTAGCATTTGATCATATTGGTGTTGTAT GTGAGACCTCATACAACATGTTGAAAATGCGAAGAATTGACTCATCGACA CTCGCTATTCTTCATGTTTTTGCATATATCTCTGGAGACAAGTACTTCAA CAATTGTGACTACAGCTTATCCATGACAGTAGTAAAATCTTTAGTTAATT TTTTAGAGAGGGAAATGTCATCGATTAGCGCGCCACAAGTTGGGTTTCCT CGGTGCAAAAATTGCCCATATTCTGGGAATGCAATTCCCATGGATATAGT AGTTTCACTGCTCATAAAAAAACTTCATAGCTATGTCTTATCGAATGTCT CATATGAAGATCTGAGGGAAGCAACTGTTTACATGAATTATGAAGCTCCG ATTGGCAGTGAAAACAGAGAACCAAGTTCAGGTGATGGAGAAAACCCGCA AGTCCAATGTCATAAGTTTGATGTCCCCTGTTCCCAGAAAACAAGAATGT CTACTTCCTGCAGGACCCTGTTATATTTGGGCGATGTCCTGTCATTACTT GAGCTGGTAGCATCTATCATGAACTGGAGTTGGTCGTTCACAAATATTGT TCGGAAACTTCTGGAGATACTTGATTCCTGTGGCATTGAGAAGCTTGTGC CTGCTATCGTTGTTCTACTGGGCCAGTTGGGGAGGTTTGGTGTTGATGCA AGTGGGTATGATGATGGTGGAGTTGAAACCCTTCGAGGTCGATTGTCTTC ATTCCTGCACCAAAAGGCCTCGGCTGTGACAGGATTACCATTTCAAATAG CAACTGTGACTGCTTTACTTGGACTTGTTCCCATCAGACTTTTGCTTAAT AATGTAGCTAGTTTGAGAATGGATTGTGCTCTGCTACAAGCGTAA
Pep:
>DCAR_003834pep MAQDAVVRHVPLNPCCELLQKKEYKLSQKLAKSEEGRNFLKKAIEILQDK IANFEAENVKLKEELELASTKPKDDGEKIIEESASRDTLENEISVLRSEI SCLKQKGCSGSKDMDEQVAGLQTRVSEREEEISILKEHLEKERTRAENEK KRAERELKIANEALQSAKADKARAEKLQADNERELKMNESTIRSSLENEI SSLKSEIAVLQQQTVSGSQNANKEAALLQESVSEHKAEIHRLKELLQIEK NCADFEKKKAEEMRKKLDDEKCRAEKVISESKTDLRVEESAVRVSLEDEI SSLKSQITPLQKQTVLGTQDVNKDMVLLQDCISDKDKEVNRLQELLQIEK HRADSEKNKAEEERKKVDEKKVWAETMIAEKESEIILKESAVRLPLEIEI SSLKSQLELLQQQIVSQAQDVSKNSGAQDVNKETERLISDKETEISQLKK LLQKEKKRADSEKKNAETEKCRAQKVLADRERDLKEKEQAVRLSLGIEIS ALESQIHLLQKEIAVRDEKKEVNLYQSLVSKKEAEINKLKKLVEKERKRA ECEKKKSEAGKKKVNEFQKIADTEKTRADEEKRLADIERKNVEEARLQLE ISRAEIHDLRANLKSESLKVLQANDNLEIEKQKVVKERQRADMEMAKAEE QSKTLETTRREIVEERTRADCLSLQLEEDRGRLTKLREEIGEQVSSQDTG KDAGDLSVDITSIKLLKKTLELERMQAKHAKEVASFEKDRNILLQQEIRR IKEAFSGIVDHLDILDKCSSHRDVGINDLEKNSNVSRSRGLKRKFMDEEL CQVQHHNGNELMKSSSPLDAYVTHKHHKQCSAPLLSSKDCTEPLSGIGSK AMPLLGGTKQALLRTANSNMASFSDKALLGSQEGWALSVGESDKLAEGGI NMQLTVPGSSNNMSKPMHNKIFAPLDENSVRCPLRINAVVDEVELDRDRN RSLDAVESFEYMYYEGKKWCRQITENVSVQQDMLECSVEGVPSNINYANQ EREHSVFVKEIAMSNNLKTYSHPTDSRSMCDATGTTHACNEETGDASRNY LCSIDEVEDGDYLKLLSLDNPLDEETYRMARERPLSPTLPEIGSLSVGAH ETDDNDSINAASPHNDTMVPFCSADEEIDSSKLNAYTSGTCHVLPFPEKV GVTGLNVTSENNDTFLTSDPGNLGQSFCGHKGLNAASGSKPKPACSPCYI VIFSDITSNNSISKISSATRTCLAQCSMLPQTDHVVQVMSTLLKVEGLLS REMVCVFFSMLLRSIPECALEDFKNLADGSLVRSFEIFAQKVHSVMDDLE TKSVDELLNLDELLSLIEDFLIHRRVVHCDVLSESLAVNDPKLDNNASGR NMLSFQAASDQQLISASLVLASICLAFDHIGVVCETSYNMLKMRRIDSST LAILHVFAYISGDKYFNNCDYSLSMTVVKSLVNFLEREMSSISAPQVGFP RCKNCPYSGNAIPMDIVVSLLIKKLHSYVLSNVSYEDLREATVYMNYEAP IGSENREPSSGDGENPQVQCHKFDVPCSQKTRMSTSCRTLLYLGDVLSLL ELVASIMNWSWSFTNIVRKLLEILDSCGIEKLVPAIVVLLGQLGRFGVDA SGYDDGGVETLRGRLSSFLHQKASAVTGLPFQIATVTALLGLVPIRLLLN NVASLRMDCALLQA*