DCAR_004427

Resource Type: 
Gene
Name: 
DCAR_004427
Identifier: 
DCAR_004427.gene
Locus Tag: 
DCAR_004427
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.
Cross Reference: 
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_004427, is a part of gene, DCAR_004427.
The genetic_marker, MK004060 K1504, is located in gene, DCAR_004427.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_004427DCAR_004427.mRNAmRNADCARv2_Chr1:47965096..47974681
Sequence: 
ATGTCGAAGATGAAACACTTGTTGCGTAAGCTTCACATCGGCGGCGGTGG
CGCCGACAATTTCGCCGATCACCACCGCGTGGAGGCGAGTTCGTCGGTGA
GCGCGAGCCCGACGCCGCAGACGACGCCGGTTGCGGCGGAGACGGCGGCG
TATTCGGCATTGACGAGCGGGGAATCGGCGGCCGCGGAGGAGGCGTACTT
CGAGGAGGAGTATCAGATGCAGTTGGCGTTGGCGATCAGTGTTTCGGATC
CTGAGACGAGAGAAGATGCGGAGACGGCGCAGATCAAGGCTGCCAAGCAG
CGGAGCTTGGGGCTTTCGGGTTCGGAGAGTGTAGTGGAGTTTTTGTCGGT
TCGGTATTGGGTAATTTGCTGATTTGCGGTTAATTTTTGTTAATTGAAGT
GTTTAATTGTTGTTACTGAAGGTGTTGATGTATTGTGCGGTTAATTAAGT
TAAAACTGTTGGTATTGTTATTAATTAAAGTGTGTAATTGTCATTTTGTT
GTATTGAGCATTTAATTAAGTGAAAACTACCGATTTTGGTATTATTCTTT
AAGCATTTCTTTTTCATTTGTTACTGTTCTGCTGCGCGGGACAGTTAATT
AAGCTAACATTGTGAGATTTTGTCATTAATTGAAGCCTTTGATTCTTGTT
TCTATATTGGGAAGTTAATTAGGTTAAAATTGATTTGTTTTTTTAGTTTG
TTGGAGTTTCTAATCTCAAAATTGGCCTATCACTGTCTTTATATTAGGAT
CTAGATGTTGAGCGGTACTTTGAGCTCACTTTAACTAGTAAACCTTCATA
CTGTGGAATTAAAGTTTTGTATTTGGATTATTGTCACGGTAACGAATAGG
TATTAGTTTTCCTTTGCGGGCAAATATAAGTGCTTGTTCTTGTTTGTGTT
AATTATGTTAGCAGTGGCGTAGTAGGGTTTTGCTTAAAGTAGATGCTAGT
CTGTCATTCTTATGTTTTCCCTAGGGTTTGAATACTGACTAATTAGCCGA
ATTTCTTCTCTGCAGAGTAATAATGTTGTTAATTACGACGAGAAAGTGAT
GAATGGATTTTATGATATTTATGGAGGTTCTTCAAACTTAACCACCCAAG
GGAAAATGCCATCACTAGTGGATCTTGAAGCAATTCCTGTATCAGACAGT
GTTGATTATGAAGTTATATTAGTGGATCGGGCAAATGATATAGAGCTGCG
GAAACTTGAGGAGAAAGTCGTTGGATTATTATTGGATTATCAGGCATTGG
GGGCTGGTCAAATTATGAATGGTTTGGTCCAGATTATTGCTGATATAGTC
GTCGATAGAATGGGTGGTCCAGTCAGTAATGCAGATGAATTGCTAAAAAG
ATGGACTAGCAGGAGTTATGAAGTGCGGAATTCCCTAAAATCTGTCATAA
TCCCCATTGGTTGTCTCGAAGTGGGGCTTTCACGCCACAGGGCCTTACTT
TTTAAGGTTTGGAAATTCGAAGTTTCTCTTTCTCGCATCTCTCAAGTCAC
ATGTGTGTTAATGTAGTTCACGACAATTTTTTCCCATTGGACATAATTCA
TTTTATATTTATTACCGCTCTTAGGGTGTAAGAATTAAGAGACCAATCCT
TAGTTTAAAAAAATGAGCAAAATTATTTGTAGAACTTGTCTTCACTTCGT
AGTATATCACTATTAATATTATTTGATGTGTAAAGGTTTGGGTACTATGT
GTTTACTTTGGTCATTGCAAATTAGGTTAGGACTTTGTTTTCACACTCAT
CTATAAGAAGTGAACATGAACTCAAGCATTACATAAGTACCTTGGTTCTC
ATCTCTTCTAGTAATATTTAAAATCATAAACTTGTTCTGGTATATAGTGT
TCTTACTACAGACCTGATCTTTTTAATCATTTCAGTCTTTCTAGTTGCAC
CCCAATATTTGGTAGACAGCATTCTACATTGTGTTAAAACGGGTTTGCGA
CAGTGATACGAGACATACAGGTGGACAAGTTCCTATGCTACTATGGAGAA
TCGAAAATCAATTAGGACTAAAATTTTCAGTGACAACCTTGAATAGATAT
CAAACAGAATTGAAAATGTTTTTATCAAAATATCTTTCTGCAAAATATTT
ATGTGAATTAGAATTGCTAATAATTTGAGTCATAACAATATTTGGTTCTT
TTTGCCAAGTAGAAGTAATATAGAGCCATTGATTAATAATTAAGAGATAA
TTTTGTTAGTTTTTTATGCACGTGTAAATGAATTGTGTGGAAGCATTATT
AATTAATGGATTTATGTATAAAAGTTATATTGTAATATTTTGTACAATGG
TTGCTAGGTACTCGCGGATAGGATCAACCTTCCATGTATGCTGATTAAGG
GTAGCTATTATACTGGCACCGATGATGGAGCTGTAAACTTGATCAAAATT
GATGATGGAAGGTATTTACGATAATAATATGTGAAAACTAATTCTGTTAA
GTTCTATTATTCTATACATTACTTCTATATATAGCTCTGTACTGATTGTG
TATATGTTCTAAATTAAAGTTTCATACTGAATTCTTAACTCATCATAACT
TAGGCTAACTCTTAAATGAAAAGAAAAAAGACTAATATTAGCTGGTAGAT
AGTATGTGAGGTAAAAGAATTTCTGAGTGAATCTTGTTATAAGTAATGCA
ATTCTATTTTGTGTTTAATTGTTCCCATTGTCATAGAACCACATGTATAA
AAGCCGAAAATACTTGCCTTGATCTTCCATCTGTTAAAGATCTTATGTTC
CGAAATTATTTGGTTCAGTGTATTATAATCTAATGTATGCATTCCGATTG
CTGATAATCTGTTCTCATTGTCGTGGTTCTGATATTTTTAAGCTTTATAA
CATGGATCCCTCATTTGGCACAAAGCATCCTTGACTAACAGTAGGCACTG
TAGAAGGGTTTGAGGTTTTGGACCATTGGTGAGCCACAGTTCTTTCGTAT
TATGATGTCAAATGAACACTCAATAGAAATATGAATACAATGTTAAATTT
GAGTATTCACTGTTGTTGACCAGTTTTGGAGTTTGTTCTCTTCTGTGAAA
CATGTCAAATGGTGAACAGTATGTTTAGGTGGTAATTGTCAAATGCAGAT
TACTCTTCTTCTGCCGCTTTGTTTTTTAAGATACACTGTTAAAAAGTGAA
ATGTAGCAAGTGAACTTTACTGGCATAGTAGGTGGATGTCCTGCATATAC
TAATCCACAGTTGACAATTTAGAAGTCATATTACAAACAACAATAAAGTT
GTGATGTTGCTGATTGTCGGATTGATGCAGCGAATACATAATAGATCTAA
TGGGAGCTCCAGGCACATTGATCCCAGCTGAGGTTCCCAGTTGCAATCTT
CAGAATTTTGGCCTAGATACCAGGTCTTATACTGATATATCTGACACAGT
TATCGGTCATGAAAGAGTTGTCACAGCTTCTAGTTCAAATTCAGTTACTG
CATTATCTGAAGGTATCCCATCAAAAAAGGATGATAAGAACGTTGGTGAT
AAGAACCAAATGGAGAGGTTTGAATATGACTTCGGAAAGCTTCTTCCATC
ACTATGCAAGTCAAACGAAGGGTTGTCGAGCGGCGGAGAGAAACCATCAG
CTGCAAAGAAGTTACAAGTTAAAGATGTCTCCAAATATGTCATCAGTGCT
GCTAAAAACCCTGATTTTGCACAAAAGCTTCATGCTGTTTTGTTGGAAAA
TGGTGCATCACCTTCTTCAGATATGTTTTCTAATACAAATCCTCAGTATC
TTGGTGAAGATAACATGCTAGCAAAATGTAATATATATGATGGAAATATG
GCGGATTGGGGTGCACAATGTGATCATACATTCTTGCGTAACAGTGAACA
GTGTTTTGTACCGTTTACTGGAGCACAATTATTTGAAAATGTAAGCTATG
ATACTGAGCAAAATGTGATCAAGAGGCCTCAGACAGCACAGGAGGAACTG
AACTTCCCTAACACTGATTTCATGTTACCGTTGTTTGTTGCTAATAAAGA
GGGTTCTGTGCCTAATTACAGTGAAACTACGACAAACTTTTCGACTCATG
ATGCCAATGCAGTTGGTTCCTCTCAGCTAGTTGCTAGTGTTTTACAAGCC
GATCACACTAGTGTATCATCCTTGTCTCGTGCATATAATCCTATCAATGG
ACAACCCAGAGACGCTCTTGTTGGTAATGATGCCCTATGCTCCAAAGAGA
GTACCACAGATGTTTCCGAGAATATTGAAAAACAAGAAGAAACCTGCATG
CAATTGATTACTAAATCCAATGGTGATCAGAATATTTCCTGCAATACTTA
CAATGAGAAGAGCAGCCCAGTGCTGGGAGAGGTTGCAGAGTGGGAAATAC
CGTGGGAGGACCTGCAAGTTTTTGAACGCATTGGTATTGGTAAGAATTTA
CAGAAGTTTCTCCTAATGAAGATTAAATTTAGGTATAAAATTGATATGTG
TGTGTGTGTGGTGGTGGGGGGTGTTAGATAATGCTTATGTGCTTTTCCTA
GTTTCAGCAGGCTAAAATGTAGAAGGTGTTTTGAGATCTTTTAACGGTGT
GGCACTGCAAATTGTGTTGTTCTGGCATGAAACATCAAAAAATTAGCTCA
CAGCATTTTTATTACTTAGCCAGTATAGGATTTAGCCAGACAAAACTAGG
TTTCGTCTTGACTTTATCTTTAGCATCTACAAGGCTTGATTAATATCTAT
AATGAGTCTGATGGCCGAGGAACCAGGAGGTAAAAGTTGATGGTGTATAA
TTATAACAATGTAGAGATGGTTGGAAGAATTTTATATATTATAAGCATGA
ATAAGAGATGGATTACAGGGGGAGTGACTGGATAATAGAAGGATAACTAA
AGGAGGATGTCCAACCCTAATCATCAGCTCAAATTTGTAGGATACATGCT
ATTTATCAGGAATTTATTGATATAAATTGGAATGTAGCATCATGATTGAT
AATACATCCAAGTGCAAACTATTTCTTGAAATCCCCAACTATTCTCTGTT
TCCATAGAATCAGTGTTCATCTCCTTTTTATACTGAAAAACAAATAAGAA
AGGTTCTCTGCTAGAAGATTTCTGTAGATAAATGCATGAAGTAGAAGAAA
TTAAAGGCGACTAAACTGAGCTAAGTACAATTAAGAGATTCATCTTCATG
TGTGCCTGGTAAATTAACAGATTTTCACATATTAAAGATGAGACAGTTCT
CGACGTTGCAAGCTGTGTTACATGGGCACTTTTATGTGGGTAAAGTGAAT
TACCTGTAATAATGCCAATAGCAAACATAGATGTTTCATATTTGTGCTTA
GCATTCATGTCCGGTCGACATTTTATTGATAAAAAAGATGAAAATGATTT
AATATAACAGCAAATTTAACAAGTGTTTGCCACGGTACGAACAAGAAATA
TTATTATTGTTATGCCCTCTGCATGTCTTTATGTTATGTAAGTGTTTATC
ATACTGAAATTTTGCTTAAGATGGTATAGAAGTCGCTAAACTTGTTATTA
AATAGTACTCCCTCCTTCTCAACCATTTCTTTACACTTTCCTTTTGAGAT
GTCCCATCCAATTCTCTACATTTTAAAACTTACTAAGGTGCTGTTTGGGA
TTGCTGTTGCAGACAGCAACAGCAGCTTTTTGCTGAAAAGCAGGTGAAAA
ACTGTTTGGTAAATGTTAAAGCAGCTTTTCTGAACAGCAGCTTTTGGCTG
AAAAGCTGCTTTTAGAAAAAGCAGGTCCTCCTATGCTTTTGGAAAAAGCT
GCTTTCAGCTTTTGCAGGATGCTGTTACAAATTTCACTATCAAACTTCAT
AACAAAAAATATTTTTTTATATTATAACTTAAAATAAACAAATATCAAAA
AAATTACCAAACAGTTATCTGATTTCTACAACAGCACTTTTTTTACCAGC
ACTTTTACTGACCGCACAGCAATTTTTAACAGCACCCCCAAACAGACCCT
AAATATAGTAAAATTTTATAATATAGAATTCAACTAATCCCACTACTTTT
CTCCACTACTTACTTTATACATTAAATATCAAGCGGTCCCACTGCTATCC
TCACTTTTCTTACCTTTTCACCATTACTTTACTTACTTTCTTAACCTCCT
TGCCCAACCTAAATGTTAACATTTGGGTGGGATGGAGGAAGTAACATATA
ACAAATATGAATTTATCGACCTTGTCTTGTTGTCAAAGAAGCTGGCTCAT
TTCAGTCCAAAATTAAGCGCACATGTATGCAATTACCTCCAACAAACTGT
GTCCATGTAACATCACTCCGTATTTTCTTGAGCAAAGCTACGGTAAATTG
CAGCTGTTAGTTCAAAAGGCTGTAGCATTTATTTCCTCCTTGGATAAATT
TAAATAACCATTGATTGCCGTCCTCCTTTGAGCAACTATTATTGCCTCTA
TGCATATTAGGCTCTCTTTGCTTAGAGAAAAGAAAATCAAATTTGTCATT
GCTTTTGGAAGAAGTATTATCTTCTTGTGATTGAGCACGTAGATATTTTA
TTAGAAGTGTGTAGAGTAAAAGTTAACTGTCAAAGCTCATTGTTTCCATC
TCTAGATGTATGCATGTATATATGACACATATGTGTCCAGCAATTGTTTT
TATCTGTGAAAATTTGAAATTTGATTTACATTGATATAATTCTTAATGAG
AATTATGATACAATTTGCAATGTTTATTTTGCAAATGTATTATTTTATAA
TTTTGTAGAGTATCTGCTTATCTGGTAACCTCTACCAGAATAATTAGTTT
TGTCTCTACGAAATGTGATACTTAAATGCAGGCACTCCTGCTATGCCCAT
AACTCATTGTCTAATTATATCTTATATGGATTTTGCTAGTGGTTTCTTGC
AAAGACTAATCCTCTTGTGTATTTACATGGGAATTGGAATTTAATGTCAA
TGTTAGTATTACAATGACTCAGTTCTTTTAATAATCTTTTTATTTTGTAT
GGGCTGGCAGGTTCATATGGTGAGGTTTTTCGTGCGGAATGGAACAGCAC
CGTAAGTTAAAATCCTTATTTATTTATTTTTTTATTTAAGCTCTGATCCT
GATCAGGAGTTCCCTTTATAATGCATGATCTCCTTATTAGTTTCACATTG
TCCATTATCCAACATGTTGGCAGAAACCGTAAGAACTTGATGGGAAAAAC
ATGCGCGCGCGTGTGTGTGTGCGCACATTTTTGCCCTTAGATTTTTTTTG
CAAAAGCTGATTGAACAGTTCTATTTTTTGGCTCTTTCGAAATATTAAAT
TTGCCCATCTTAAACATGATTACATGATAATTTGTGCCTGCAAAATCGTT
ATTGCACTGCCAGTGAGTTTTGCGATAGCATTTCTAAAAATATTTGATTT
CTGATGTTGATCAAATAATTGACTGTGCTCTTCTAACAATATATGTGTCA
GTTGTTAATCTGTATTTCTAGCAAGGACACCATATCTCATTAATCAATAC
TTTGGTATGGTCTGACAGGAAGTTGCTGTGAAGAGATTTATGAACCAGGA
TATCTCAGGCGATGCACTTGATCAATTTAAATGTGAAGTAAGTTATATAT
TTATCTTGCATTTGATTGAACGCTGGTTACGTATGTATCTTAATTAACCT
TTTAATGTTTTGCCTATTGCAGGTTGAAATTATGTTGAGACTGAGACATC
CTAACGTGGTTCTCTTCATGGGAGCAGTTACTCGCCCCCCAAATCTGTCT
ATACTTACGGAGTTTTTACCAAGGTTGATCTCTTTCTCCCTTGTTTATAC
TAGACGATCTTTACCGGGATTTGTGTGCGCCACACACTCACACACACACG
CACCAGTTCCAAGGCACACAACATTTCAACCTGCATAAGAGATATAGATT
GAAAGAGTACTTTTTTTAAATATGTCATACTAAAATTACAACTGTTACTG
AAAATAAGATTAATACAGAAAATGAAAGGGTGACCAAGGAAAAAAGACCC
TTGTCTTTAGTATTGCACAGGGGTCGTATTCTATGTCCTTTATAAATAAT
GGGCAACTTGACTACACTTATCAGGTGTGAAGTTATATGATAAAAAATAG
TCGCGCTCGCATTTTTTTTTTGGAGGGAGTATAGGCGAAGGAAAGGGAGG
CTATTATATTCTGTTAACAATGCAACTGGCACCCTCTCTACTCCCCATAA
TATGATATTAACTAAACGGTTTGTCTAGTGCGTGCCCATGGGCACATGCT
AAGAATTAAATTTTATGCATTTAGCTCATTTTGATTGGTGTGGTGGTTGT
ATATGCAGGGGGGGCAACCATTATTAAGAAGTAGGAGCCAATCAAAATGA
GTTGAATACATAGAATTTGGTGCTTAGGATGTGCCCATGGGCACATCATA
GAAAAACTGTTAATTAAAACATTGCACATAGTTTTTCGCAATGAACAAAA
AATGCTTGTGTTCTGAGCCATGGTCCTGATTACAGAGAGCTATGTAATAG
TCATCAGTTCTCTTACCTGCTGTTCAAGTTTCTCGTAGTGCTGTTAGAAT
GGTGATATACTGAAAATGTTCAATCACTAGGTATTTTAATAAATAAAGGC
TTCCATGTAGATTTATACTGGATTTTGTGCAGGGGAAGTTTGTTTAAGCT
GCTGCATCGTCCAAACATCCAACTTGATGAGAAGAGGCGATTGCGAATGG
CTCTTGATGTGGTAAGAGTTGGATACAATGTTTCCACTTGATTTCTGCAA
TTTATTTCGATTGTATCTTATTAAATCTGTTTTAATTTTTTGCAGGCTAA
GGGAATGAATTACTTGCATACAAGCAATCCTATGATTGTACATCGAGATC
TGAAAACTCTGAATCTCCTTGTTGATAAAAATTGGGTTGTTAAGGTTAGT
TTGGTATTGGCCTTCAAGTCCTCATATATTACAAAGGAAATCGGAAATCC
ATTTTTTCTTTGCTTGAAGAACTCAGAATATTATGATTTTCTGCTGAAAC
TTATATTTAATTGTTAATGTCTACAGGTTTGTGATTTTGGGATGTCACGG
TTGTTGCACCACACGTTTTTATCTTCTACGTCGACTGCGGGAACGGTAAG
GCTTTGGGATACTAAAGGTGTTATTTGTCAGTTAATTAGGTTTATGTTCT
ATCTACCCTATTTTCGTCTATTTTGTGTTCATTCCTTAAGTTCTGTTTTC
CTTGCACCCTAGCGAGGGTGGTAAAAAGTCACAGGGGTAAAGTGGGAGCT
TTTCTATAATTCTTAGAGCATTACATGTACTGATAGATTGTATATGCAGC
CTGAATGGATGGCTCCTGAGGTTCTAAGGAATGAATTATCCAATGAGAAG
TAAGTTCATGCTTCGTATACCTTGAAGATCTTTGTAGGGGTTTAGTAACA
CTTTTGACGATTTTGTTTCGGACTTGCTGAGAGTATATTGGATTCTTTTT
GTAGGTGTGATGTATACAGCTTTGGGGTGATATTGTGGGAGTTGGCAACT
TTGCGTGTGCCATGGAACGAGATGAACTCTATGCAGGTTGTTGGAGCTGT
TGGATTTCAACATAGACATCTGGATGTACCAGACTGGGTTGATCCCTTGG
TAACAGAGCTAATACTTGAGTGCTGGAATCCGTAA
Sequence Length: 
9585
Sequence Checksum: 
afd5fcfec327d4f1074bd6d9cd793b2d
View location in JBrowse: 
Cds: 
>DCAR_004427cds ATGTCGAAGATGAAACACTTGTTGCGTAAGCTTCACATCGGCGGCGGTGG CGCCGACAATTTCGCCGATCACCACCGCGTGGAGGCGAGTTCGTCGGTGA GCGCGAGCCCGACGCCGCAGACGACGCCGGTTGCGGCGGAGACGGCGGCG TATTCGGCATTGACGAGCGGGGAATCGGCGGCCGCGGAGGAGGCGTACTT CGAGGAGGAGTATCAGATGCAGTTGGCGTTGGCGATCAGTGTTTCGGATC CTGAGACGAGAGAAGATGCGGAGACGGCGCAGATCAAGGCTGCCAAGCAG CGGAGCTTGGGGCTTTCGGGTTCGGAGAGTGTAGTGGAGTTTTTGTCGGT TCGGTATTGGAGTAATAATGTTGTTAATTACGACGAGAAAGTGATGAATG GATTTTATGATATTTATGGAGGTTCTTCAAACTTAACCACCCAAGGGAAA ATGCCATCACTAGTGGATCTTGAAGCAATTCCTGTATCAGACAGTGTTGA TTATGAAGTTATATTAGTGGATCGGGCAAATGATATAGAGCTGCGGAAAC TTGAGGAGAAAGTCGTTGGATTATTATTGGATTATCAGGCATTGGGGGCT GGTCAAATTATGAATGGTTTGGTCCAGATTATTGCTGATATAGTCGTCGA TAGAATGGGTGGTCCAGTCAGTAATGCAGATGAATTGCTAAAAAGATGGA CTAGCAGGAGTTATGAAGTGCGGAATTCCCTAAAATCTGTCATAATCCCC ATTGGTTGTCTCGAAGTGGGGCTTTCACGCCACAGGGCCTTACTTTTTAA GGTACTCGCGGATAGGATCAACCTTCCATGTATGCTGATTAAGGGTAGCT ATTATACTGGCACCGATGATGGAGCTGTAAACTTGATCAAAATTGATGAT GGAAGCGAATACATAATAGATCTAATGGGAGCTCCAGGCACATTGATCCC AGCTGAGGTTCCCAGTTGCAATCTTCAGAATTTTGGCCTAGATACCAGGT CTTATACTGATATATCTGACACAGTTATCGGTCATGAAAGAGTTGTCACA GCTTCTAGTTCAAATTCAGTTACTGCATTATCTGAAGGTATCCCATCAAA AAAGGATGATAAGAACGTTGGTGATAAGAACCAAATGGAGAGGTTTGAAT ATGACTTCGGAAAGCTTCTTCCATCACTATGCAAGTCAAACGAAGGGTTG TCGAGCGGCGGAGAGAAACCATCAGCTGCAAAGAAGTTACAAGTTAAAGA TGTCTCCAAATATGTCATCAGTGCTGCTAAAAACCCTGATTTTGCACAAA AGCTTCATGCTGTTTTGTTGGAAAATGGTGCATCACCTTCTTCAGATATG TTTTCTAATACAAATCCTCAGTATCTTGGTGAAGATAACATGCTAGCAAA ATGTAATATATATGATGGAAATATGGCGGATTGGGGTGCACAATGTGATC ATACATTCTTGCGTAACAGTGAACAGTGTTTTGTACCGTTTACTGGAGCA CAATTATTTGAAAATGTAAGCTATGATACTGAGCAAAATGTGATCAAGAG GCCTCAGACAGCACAGGAGGAACTGAACTTCCCTAACACTGATTTCATGT TACCGTTGTTTGTTGCTAATAAAGAGGGTTCTGTGCCTAATTACAGTGAA ACTACGACAAACTTTTCGACTCATGATGCCAATGCAGTTGGTTCCTCTCA GCTAGTTGCTAGTGTTTTACAAGCCGATCACACTAGTGTATCATCCTTGT CTCGTGCATATAATCCTATCAATGGACAACCCAGAGACGCTCTTGTTGGT AATGATGCCCTATGCTCCAAAGAGAGTACCACAGATGTTTCCGAGAATAT TGAAAAACAAGAAGAAACCTGCATGCAATTGATTACTAAATCCAATGGTG ATCAGAATATTTCCTGCAATACTTACAATGAGAAGAGCAGCCCAGTGCTG GGAGAGGTTGCAGAGTGGGAAATACCGTGGGAGGACCTGCAAGTTTTTGA ACGCATTGGTATTGGTTCATATGGTGAGGTTTTTCGTGCGGAATGGAACA GCACCGAAGTTGCTGTGAAGAGATTTATGAACCAGGATATCTCAGGCGAT GCACTTGATCAATTTAAATGTGAAGTTGAAATTATGTTGAGACTGAGACA TCCTAACGTGGTTCTCTTCATGGGAGCAGTTACTCGCCCCCCAAATCTGT CTATACTTACGGAGTTTTTACCAAGGGGAAGTTTGTTTAAGCTGCTGCAT CGTCCAAACATCCAACTTGATGAGAAGAGGCGATTGCGAATGGCTCTTGA TGTGGCTAAGGGAATGAATTACTTGCATACAAGCAATCCTATGATTGTAC ATCGAGATCTGAAAACTCTGAATCTCCTTGTTGATAAAAATTGGGTTGTT AAGGTTTGTGATTTTGGGATGTCACGGTTGTTGCACCACACGTTTTTATC TTCTACGTCGACTGCGGGAACGCCTGAATGGATGGCTCCTGAGGTTCTAA GGAATGAATTATCCAATGAGAAGTGTGATGTATACAGCTTTGGGGTGATA TTGTGGGAGTTGGCAACTTTGCGTGTGCCATGGAACGAGATGAACTCTAT GCAGGTTGTTGGAGCTGTTGGATTTCAACATAGACATCTGGATGTACCAG ACTGGGTTGATCCCTTGGTAACAGAGCTAATACTTGAGTGCTGGAATCCG TAA
Pep: 
>DCAR_004427pep MSKMKHLLRKLHIGGGGADNFADHHRVEASSSVSASPTPQTTPVAAETAA YSALTSGESAAAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQ RSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGK MPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGA GQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIP IGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDD GSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVT ASSSNSVTALSEGIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGL SSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDM FSNTNPQYLGEDNMLAKCNIYDGNMADWGAQCDHTFLRNSEQCFVPFTGA QLFENVSYDTEQNVIKRPQTAQEELNFPNTDFMLPLFVANKEGSVPNYSE TTTNFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVG NDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVL GEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGD ALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLH RPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVV KVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVI LWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNP *