DCAR_004695 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_004695

Identifier:

DCAR_004695.gene

Locus Tag:

DCAR_004695

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_004695, is a part of gene, DCAR_004695.
The genetic_marker, MK008029 1_50485622, is located in gene, DCAR_004695.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_004695	DCAR_004695.mRNA	mRNA	DCARv2_Chr1:50480424..50489654

Sequence:

ATGGCAGCAGCGAAATCGTCGGTAGATATCGAAGTCGAAGACAGAGAACA
AGCCGACGAGACTTCGAAGAGCTTCGAAGAGCTCGGGGTCGACGCTCGTC
TCATTCGCGCTCTTTCGAAGAAAGGCGTGAACAAGCCGACTCCAATCCAA
TGCTCCGCCGTCCCGTTAATCCTAGTAAATCTCAATTTCTACTTCGATTT
TATCCAATTATATGAATTTGTACACGCGGCACTGTTTTTTCCTTGTTTTC
TGATTTCGCATCTAAAAATGTCGAAAAATATCGCAGAATTGATGTGTTTG
TTGCAATCCAACTCTCATTGTACACGTGGCACTTTTTTTTTGGTTTTGTA
TGAAATATATCGATCCAGGAATTTATGTGTTTGTTGCAATTCAACCATCC
TTTCAAAGGATTATATGCGTTCTGTGCACGTGTCACTGTTTCTTACTCTT
TTTTAGGTTTCGTATTGAAAATTATTCAAAATGTTAAAGGATTGGCGTGT
TTGTTGGTTTAGGAAGGGAAGGATGTGGTGACTCGAGCTCATACTGGTTC
AGGGAAGACGTTTGCGTATTTGCTACCTGTTCTGCAGAAGCTGTTTTCGG
AGGTTTCGGAGCAGAAGAAGGCTGCGCCGGCTGTGTTTATTGTTGTTCCG
ACTCGGGAGCTCTGTCAACAAGTAATGATTGAAATTGCTTGGTTTTGATG
TGATTTTGTTGTGTTTGGGTTTAGAAAATGAGGTAATTTTGGTTTTGTGA
ATGTAGGTGTATAATGAGGCCATGTCGTTGATTGAGTTGTGTAGAGTTCA
ACTTAAGGTTGTTCAATTTACTACGGATGCGCAGATTAATGACTTGGTAC
TTTTCCATTTTGTGATATTTGATGGTAAAAAGTTTTGCAAAAAACTGTGT
GCATGTTTAGAAGTTTAGTGATATTCGGTTTTTGGTGGCAGAAAGTAGCA
TTGGCAGGGCGGCCTGATATTCTTGTGTCTACTCCTGGAGGTATACTTAA
ATGCTTGAAATTAGGGGTGCTTCAAGGAAAACAGATTCAAGATTCACTTT
CTGTTCTTGTTCTAGATGAGGTAACATCTTCTTGTTGGTATTAGCAATCA
GTTTATGTGTAGCACCTCATGCGTAGTGGGTAATTTTATACATGGATTGG
TGGGAATACAGGATGATTATGTACAAACAAGTTTAACTAGTTGTATATCT
TATCAGGCTGATCTTCTGCTTTCATTTGGGCATGGGAATGATTTGAAAGC
TCTAACTGTTCACATACCTCGCCAATGTCAATGCCTTCTTATGTCTGCTA
CTATAAGGTGTGTTTCTGTGGTTTATGTGTAATCTCAGCGTCTAATTTTA
TGCCATGCACCTCAAATTGTTGTATCCATAACTTTCTGAAACTTCAATGA
ACCTCAAGCACAAAATTGACAATTTTTTAGGGCTCTGGTTAACGTAAATA
TGATCCTGTTCTACCTTAAATGCATTCTCCACTTCCTAAATGCACTATCC
ACTTTCTGCTCTGTTTATTTGCAGTGAAGAAGTTGAAACGCTGGCAAGGC
CTCTACTACACAATCCATATATCTTGACTTTGTGTGATAATGGGAATGAA
AAGGATGAAATTGTGTCTAAAAATATTCAGCAATATTATGTGAGCACTTC
AAGACCATTTTGGGTTTCTCCAGAATATCTTCTGCTATATTTACTTTTCT
GTTTGTTTGATTCTACCCTAAACTTGAATTCTAACACACTCTATCTGGAA
GATGTATGCAGTGTTTCCTTTTGTATCACCTCATCACTACCTGTTTGTTC
AAATATTTAATATTTAATATAATCTCAGTTATGAATATATCACATCTAAC
ATAGACTCTTGTTGAACTGATTTTTTATATTCCAAAACTGATTAGGGTGG
AATGAAGTGGTTTTGTTAGAGCTATATTCTCACTACGTAATTTAGTCACT
TTATCAAAGTTCTACTTTTCTAGACAAAAGATTGTACCAATATTTCTGTA
TACTGCAATGTGTCTTGAAGATGAAGGACGAAGCAGTTTTCTAAAATAAA
AAGGAACGAATAGGTTGATATACTGATGTACATGACATGATGACAAGCTT
CTTGCAGGACAAAACTTGGATATATTATGAACGGAAAACATTAGAGGAAG
GAGAATCTAACATTGCTTGAAGTAATCCAAACAACTGAATTGCGTAGTTC
TATTTAGGAAATTTAAAACATTTATATTAATATGATTGAAAAGCTAATGC
CTAGAAGAAAAGGTGAAGATAATAACTCCTCACTTTTACTAGTTACAATC
TGTTACTTCCATTAATCCTTGTTAATACCTATACTTTGTTGATGTCTCTG
AAATTACATTCCTTCTTAGATATACAGAATAAATGAATGAAAAAGTAATT
TACTGTTGAGAAACTTATAATATGTAATTATTTAAATCTTGCTATGGTGC
TGTTTTTTGAAGTTCTAATCTATGTTATGCAGATCAAATGCAGTTCTCGC
GATAAGCTTGTTCACATCCTTGCCCTCTTAAAGCTGGAGCTGGTCCAGAA
AAAAGTTCTAATATTTACCAACACAATAGACATGAGCTTTAGACTAAAGC
TTTTCTTGGAGCAGGTAGGCCAACTACTTGAAAGATCTTGAAATGGCTGA
TTTTAGTGCAAGGTGTTCATGTGACTAACCTTTTCTGGGAATAAAGTGTA
TTGTGTATTTTTTTGTGTGGCTAAATTACTGTATACATTTTTAGCTATTA
TAGATTTCTGAAATTGTTAACAATATCTTTGATGCTGTCAGTTTGGAATC
AAATCAGCTGTTTTCAATTCCGAGTTGCCACTGAATTCTCGTAAACATAT
CATTGAGGTATAGCCTTTGGAGTGCTAGTCCTGTGCTTCTTCACTTTATA
AACTTCAAAAAAATTATTAGTTTTGCAATACGATGGTTTGTAAGCTTTAA
ATCTCATTGATAATGTAAGGTTTGGTCTTGAATTTGTCAATTTACTGTGT
TCATAGGGATTTAGTGCTGGACTTTTTGATTATATGATTGCTACTGATGA
TGGTGACTCCAAAGAAAAGGAAAAAGACGGGGATGGAGATAATGCCGTGA
AAAAAAAATCTAAAAGGCGTGCCAAAGACACTGAAGCTGGTGTAGCGAGA
GGAATAGATTTCAAAAATGTGCATACGGTAAGAACATAAACAGTATACTG
GCTTTGTTAATTAATCAAGTTATCAGTTCTTGACTTTGCTGCTCAAAAAT
GTGTGGAGATGTTCCTAACTTTTTAAATGGGTGCCTTCATGTATTCTTTT
GAATATATTTTACCTGGTAATTGCTTTCATGGGTGCTACCTGCTGCTTTC
CCATTCTTTTTTGATAGAGTTAAACATCTTAATTAATATTTTCCCTGTAT
TAAGCCTAGACATGAAAGCAAAGTTCTTGGATATGTTCTGCTCCTACTTC
TGTTTAGGCATATGATAAAGTTTTTTTTTTTTACAGGAAGTTGCAGATAA
TGATTTGTTTGATACTCTGTTTTTTTCCTCTTATCGTAGGGTGATGTTTA
TAATTAATCATTAGTATTCATTAAAGTTAGACCTTAGAAAGAGGCAAGTC
ATGTATCATCTCTCAGACTCTTACTCTGTAATATGAAGAAAGATTTAAAA
AGACATCAGTTGTTTGTCTCATCAGTGTCCAAGTTAGACCTTGGGAAAAC
TTAATGTAGTGAGCATTGAATCTTTTGTGTGCAGGGGCAGGCATTAACAA
TTGTGCAAGTGCAAGCATGCAACTGACAATTATTTTACTGTAAACGATAT
ACAATGTTTTCACTTGGTAACATGTGCTGTGGTTTGAACAGGTTATAAAT
TTTGATATGCCACAAAGTGCGGTACGATATGTACATAGAATTGGGCGGAC
TGGAAGAGCGCATGACTTGGGTGAATCAGTGTCTCTTGTAAGCTTTTAAT
TGAAGAATTGGTTTTTTTTTATAGACTTATCTTCATATGTTTTAACTGGT
TTGAAGGCCTTCTTTAATTTCTGGGTTAAGCCTGTTCTAATCACTGAACT
GACCTAAGAAACGCGTTCACCTTCGAAGGATTGTTCACTTTTACGATTGT
TTCTTCCTGGCACTCCATTGAATAATATACTTTTTAAAAATAATAATTAT
TTAATAGTCGTAACGATGTTGCACTTGCTTTCTCTTTTTCTCTCTCTGGC
CCTGGACAAGGACAAAGCTAAAATGTTCATAATATATCAAATCCTTGTAT
TACCGGGCAACTTTAGTACTATTTGACTAGTTTATAAGTGTTATCACCAA
TTTTTAATATATTACTCCTTGTCATTCATATACCTGTTAAGTTGGCTTGG
AAGTGATCTAGTTGGATATTGGTTTCTCCCTGAATTATGTCACTCATTTA
ATTGTGTGGAGGCAATGAGAGGGTTAACCGAGTAAGAAAAGATAATATGT
TGAGTACATCAACATACAATTCAGACGATGACTAGAGGCTGTCAACATAA
ACTAATTAAGCCTATTTTTTGATCGACATAATGATGTTTGATATTTCTTT
TATGCTTAGTCAATGCTTTATTAGAAAAGCCTATATGGTGGAGAGCTGCC
GTTTGACGAGATGTAAATGAGCTAATGTTTGTGCTGTAGATCAATTTAAG
TTGTTAGTTCAATGTCTGTTTTATTGTTTTTGACTATTTCTGTCATATAC
AGGTTGCTCCCGAGGAAGAAAACGTTTTCGAAGAAATTGAAGCTTTGTTG
GGGGAAAATGGTCCAGACTCAAACCCTATTGCTAAGTTCCGTTTTCCGAC
TGAGAATGCTGTTGAGTCTCTACGATATAGAGCTGAGGTATGTTCTTTAA
TGGTCTATACTACTTTGTCAGTTTTTGTCACTCTTTTTGAAGTTGTCAGT
TTATTCTCTATTAGAATTATCTATTACATATTCAATTATTCTATAATTTA
TCTTTGACATGAACTGATTTCAAGGGTAGCCATTAAGACAAATATTGAGT
CTGGCATGGTAGAGTTGTATCTCTGATTAATATATGTAAAATACTACCTT
TTAACCAGATGCACAAGATTTTTTTAAAATAATTTATAGCTTGATATTTA
AATAGCTATTTTATACATTAGAATCATATTTCCTTCACATATATTTATAC
ATGCAATCTCTCAATATATTGAATTCATGACTTATCTTTTTATGTCAAAA
TGTAATACTTTTTTCTGACGGATATATTTTACCTATGTCCCCCCTCCGTC
CCAACCATTTCTTTACACTTTCTTTTTTGAGATGTCTCATCCAATTCTTT
ACATTTCAAAACTTACCAAATATAGTAGAATTATATAATATAACAATCAA
CTACTCTTACTATCTTTCTTCACTATACTTACTTTATACATTAAATATCA
ACTGGTCCTACCACTATCCTCATTTTTCTTACTTTTCATCTGTACTTTAC
TACATTTCTTAACCTCCGTGCCCAACCCAAATGTAAACATTTGGGTGGGA
CGGAGGGAGTAATAATTAAGTATCCAACTTGTGACCTTTCACAAATAAAT
ATATATATTTTCATTTGTCAAGCTTGGAATCCTTATATGCTGTTTGATAG
GAATCGAACTCCTAAACTTTGTTAGTACCTTTGGATTTTATAAAACTAAT
AGTAGCTTGTAATATATTGTTGACAAGAACCGGATTCAAAACCTTTGTAG
TATCTTTATAAATTATATATCTTGGATATTAAATATTTGTTGAAGGGGTT
TGGAACCCTAGAACTTTGCATAAGATTCCCCTTATGCCTGTTTTTTAAGG
TGCCCTCTTACAATTATCATGTATAGGATGTAATATATGTGTATTAAGCA
CTTTGTATACTGTTTTGTTTTATTTTAATGAATAACATGATACTATTTTA
TTGACCTTGACAGGATGTTGCAAGAAGTGTAACAAAAATTGCAGTGAGAG
AATCACGAGCTCAGGATCTAAGAAATGAGATTTTAAATTCTGAAAAGTGA
GTAATTTCTTGCTCCATATTCTATATGCATGCCTTGAATCTGCACCACAT
GTCCTTATATTATTTTCTCTCTATAGTTTTGAAATATAGTTACTTACCTA
ATTTTTATTATTTTTTCTAAAACTAAATATCATAATTATCTCAAGACTTA
CACTGCTGTTTTTCATTGTTACAACTATGTGGTGCTTGATTGTACAAGGC
TATGTACCTTCTCATATCCATACTATATNAAGCCGAAACAATAAAAGTTT
TGGTCGGTCGGTCATTATTTGGGTCAACTTACGGGCCTCTTTATTGTAAA
ATGAATGTATCCATGAAGTAAATTAAATATTACAACATATAGGAGTACAA
TAAAAGAACAAATATTATAATTCACCTGTGTATCACACAGGCTATAAGCT
AGTGTGTGTGTGTAGCCACGTTACTTTGGAGATGGGATGTTATTGTCTTT
TTGTTTGGACTTGCAAATGAATGAGCTGTTTGTCTACTTCTATCTACTTA
ATCATAGAACTGCTGGTAAATGCCGCTTGAAATTTGTTAACTGGACTGCA
GTTATTTCCAGTCAACCTTAATAAGTTTTGACTTTGTATGTGCAAACATT
ATCATAAGGACATTCTACAAACTACACCATACATATATGCACCTAATTTT
GAAGAAAAATAATGTTCAAAGCTTAACATGATTTAACATACATGTTGTTG
TGCATGTGCAGGTTGAAGGCCCATTTCCAAAATAATCCCAAGGATTTAGG
TAAGAGAGTTTTTTAGCCGCATCATCTATTTTCTATTATTTTTTGATAAT
CTGAGAAGTGAGTTGATCTGTTATTATTATGTGGACAGATCTTCTGAAAC
ATGATAAGCCTTTAAGTAAAAAGGCCCCTGCTCCTCACCTCCGTGATGTC
CCTGCATACCTATTGGATCCAACAACACAAGAAGCAAGCAAGATTGTCAA
GCTTACTAGTGCAGTAATGAGAAGAAATAATAACTCTGCTCGCCGCAGAG
GATCACAGGGGAAGTCTAGGAACAGAGATCCTCTCAAAAGTTTCTCTGCC
CAGGTATATAGAAGTTATTGTTTTTCTTATGCTTCTTTTTCTCTAACCTT
TATAAAAGAATTGTTTTAATTAATTCTGACAATACTCCCTGAGCTTACAC
TTAATGATATCGATGTATATATTGATGTAAGATCTATTATTCAGTTTGCA
CGCAAGTTCAAGATAATGTTCCCATTAGGCAGATTTCAAGTCAGTAAAAA
AGGTTATAAACCCTTTAGTTCATTTTGTCACCCCTCATGTTACCCAGAGC
TTTTCCCGAGATAGCTTCATGATTTGCAGTTGTAAAGTATGAGAGGAAAG
ATACTACAGAGTCATTTGGTTGTAGGGATGGCAAACGGGTCGGTCGAAAC
GGGTTTTGTAAAAACCAAACCCGAACCCGAATTTATATTGTAAACCCGAA
CCCGAACCCGAACCCGAAAAAACCCGAACTATGTAAACCCGAACCCGAAC
CCGTCGGGTTCTCTTCGGGTTCGGGTTAACCCGAAACCCGAAATAAATAA
TTTTTTTGCAAAAATAAAATTTTAAAAATTCAGTAGTTTAAAATAAAAAT
ATTGCAAATTCTGAAAATTTGAAAGGAAATTATAATTTAAACATTACAAA
ACTATATGGTCCATTTTATTTATTTAGTCTGCTAATATGGGGAAAAAAGC
ACTAAAAGCAAGGCACTAAAATCATCCTGATAGTTTACCTTGTGGGTGAC
AAACAAAGTCAATAAGAACTGAACCGAGAACTCATGTACCGCACTGCCGC
TGATGTGCCGCTGAATCGCAACTCTCAAAAGTGAGAACCGAGAAGCAGGA
GGCCCGAAGCTAATTAGGTTTGGGGTCAAAGTCACAATGACTTAATAAGA
CTACGCACCACGTATGTACATATTAGTATATTACTAATTACTAATATATT
AATATTAATAATTTATATATATATATGGGTTTCGGGTCGGGTTCGGGTTT
GGGTTCGGTTTGAAATGGGTTTCGGGTTTTCGGGTCGGGTTCGAAACGGT
ATGCCATAAACCCGAACCCGACCCGAAAACCCGAAACCCATTTCAAACCG
AACCCAAACCCGAAATATTCGGGTTCGGTAAAACCCAATCGGATCGGTAC
GGTTCGGGTATCCATCGGTTCGGTACAAATTGCCATCTCTGTTTGGTTGG
TTAGTATCAGGAATCAGATATGGGTTTAGAATCAACCAAACCCATACCTC
ATGTTTGGTTGATCTTTTTTTATTTTTGTACCCATACCTCAGACTCCTAA
GCTTATGGTGGCTATGGGATGGTGGTACAAGGTATCTTTTTAATATTATT
TTTATTCCTTAAAAAACAATATCTATATGTACAAATAAATGATAATAGTA
ATAAAAAAATATTTACAATTTTTAATATGATAAAATATATTAATTTAATT
AATAACTTGATAATATTTTAAATCAAAAAAAATTATTCCGGCACTTAACC
AAAAACATGAGAGCATCTCAATTATCTCCTAATTGGCTCCTAAATATAAT
AAAAATAGTGAGCTCCTAGCTAGTGAGTACATCATTAGGAGTGTGAACTC
CAACAATGCTCTTTATACCCACTCCTAACATTATATCTTATTCTTATTTG
AACTCCACTATGATAAAAATTCAAATTCAAATGGTCGAGAATGAATATTT
TATTATAAAAATCAAGTTAAGGAGTCATGTAGTGGCTCTTTAAAGAATGA
GAAGAGTCTCCTAGTGTTTTTAGGAGCCACTAAGAGTCTCGTGGAGCTCT
ATTTTTTCTCATGCTCCTTATTTTTGGACTTACGAGCCTATCTATGAGTC
TCTTGGAGATGCTCTGATATTAGAAATTATACCTCAACCCCATACCATCT
CAAACCGATTCCTGATTCCAACCCCATACCCCCTCATGAACCAAACAACT
TCTAAATGATCAATACAAAATGATAGGCTCAACCTGTCTATTTGCAAAGA
ATATTATGTTCTGGGTGTTGGCATCAACATCTAATTTAAGTTGCTGATTT
TTGATGAAAATATGTATGGTATAGTGGTTTTGTTTGGTATTACATTTAGT
TTGCATTGTTTCCTGCTTATGCATGTTCCTTCTGTGGTCACAGGGACAGA
AGAATTCTTCAAAAGGAGGGATGAAAAGGAAGGGAACAGACGGGGATAGT
GGCAAAAAATCCAAAACAAAACACACATGA

Sequence Length:

9230

Sequence Checksum:

5d4dc9c6674ca41211d6dbe83d8389ce

View location in JBrowse:

DCARv2_Chr1:50480425..50489654+

Cds:

>DCAR_004695cds ATGGCAGCAGCGAAATCGTCGGTAGATATCGAAGTCGAAGACAGAGAACA AGCCGACGAGACTTCGAAGAGCTTCGAAGAGCTCGGGGTCGACGCTCGTC TCATTCGCGCTCTTTCGAAGAAAGGCGTGAACAAGCCGACTCCAATCCAA TGCTCCGCCGTCCCGTTAATCCTAGAAGGGAAGGATGTGGTGACTCGAGC TCATACTGGTTCAGGGAAGACGTTTGCGTATTTGCTACCTGTTCTGCAGA AGCTGTTTTCGGAGGTTTCGGAGCAGAAGAAGGCTGCGCCGGCTGTGTTT ATTGTTGTTCCGACTCGGGAGCTCTGTCAACAAGTGTATAATGAGGCCAT GTCGTTGATTGAGTTGTGTAGAGTTCAACTTAAGGTTGTTCAATTTACTA CGGATGCGCAGATTAATGACTTGAAAGTAGCATTGGCAGGGCGGCCTGAT ATTCTTGTGTCTACTCCTGGAGGTATACTTAAATGCTTGAAATTAGGGGT GCTTCAAGGAAAACAGATTCAAGATTCACTTTCTGTTCTTGTTCTAGATG AGGCTGATCTTCTGCTTTCATTTGGGCATGGGAATGATTTGAAAGCTCTA ACTGTTCACATACCTCGCCAATGTCAATGCCTTCTTATGTCTGCTACTAT AAGTGAAGAAGTTGAAACGCTGGCAAGGCCTCTACTACACAATCCATATA TCTTGACTTTGTGTGATAATGGGAATGAAAAGGATGAAATTGTGTCTAAA AATATTCAGCAATATTATATCAAATGCAGTTCTCGCGATAAGCTTGTTCA CATCCTTGCCCTCTTAAAGCTGGAGCTGGTCCAGAAAAAAGTTCTAATAT TTACCAACACAATAGACATGAGCTTTAGACTAAAGCTTTTCTTGGAGCAG TTTGGAATCAAATCAGCTGTTTTCAATTCCGAGTTGCCACTGAATTCTCG TAAACATATCATTGAGGGATTTAGTGCTGGACTTTTTGATTATATGATTG CTACTGATGATGGTGACTCCAAAGAAAAGGAAAAAGACGGGGATGGAGAT AATGCCGTTATAAATTTTGATATGCCACAAAGTGCGGTACGATATGTACA TAGAATTGGGCGGACTGGAAGAGCGCATGACTTGGGTGAATCAGTGTCTC TTGTTGCTCCCGAGGAAGAAAACGTTTTCGAAGAAATTGAAGCTTTGTTG GGGGAAAATGGTCCAGACTCAAACCCTATTGCTAAGTTCCGTTTTCCGAC TGAGAATGCTGTTGAGTCTCTACGATATAGAGCTGAGGATGTTGCAAGAA GTGTAACAAAAATTGCAGTGAGAGAATCACGAGCTCAGGATCTAAGAAAT GAGATTTTAAATTCTGAAAAGTTGAAGGCCCATTTCCAAAATAATCCCAA GGATTTAGATCTTCTGAAACATGATAAGCCTTTAAGTAAAAAGGCCCCTG CTCCTCACCTCCGTGATGTCCCTGCATACCTATTGGATCCAACAACACAA GAAGCAAGCAAGATTGTCAAGCTTACTAGTGCAGTAATGAGAAGAAATAA TAACTCTGCTCGCCGCAGAGGATCACAGGGGAAGTCTAGGAACAGAGATC CTCTCAAAAGTTTCTCTGCCCAGGGACAGAAGAATTCTTCAAAAGGAGGG ATGAAAAGGAAGGGAACAGACGGGGATAGTGGCAAAAAATCCAAAACAAA ACACACATGA

Pep:

>DCAR_004695pep MAAAKSSVDIEVEDREQADETSKSFEELGVDARLIRALSKKGVNKPTPIQ CSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVF IVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPD ILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKAL TVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSK NIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQ FGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGD NAVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALL GENGPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRN EILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQ EASKIVKLTSAVMRRNNNSARRRGSQGKSRNRDPLKSFSAQGQKNSSKGG MKRKGTDGDSGKKSKTKHT*