DCAR_006900 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_006900

Identifier:

DCAR_006900.gene

Locus Tag:

DCAR_006900

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 4 relationships.
Relationships
The mRNA, DCAR_006900, is a part of gene, DCAR_006900.
The genetic_marker, MK005320 K2764, is located in gene, DCAR_006900.
The genetic_marker, MK017133 2_29853724, is located in gene, DCAR_006900.
The genetic_marker, MK017132 2_29853818, is located in gene, DCAR_006900.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_006900	DCAR_006900.mRNA	mRNA	DCARv2_Chr2:29844572..29854585

Sequence:

ATGGCAGAAACAGAAAACACATTAGAAGGGTCAGTAGAGAACATACTAGA
GCAAGACACCCTCAAGTGGATATTCGTAGGAGGCAAAGGGGGTGTTGGCA
AGACAACATGTAGCTCAATCATATCTATTCTTCTCTCCAGGGTCAGGTCC
TCTGTTTTGATTATCTCTACTGACCCTGCTCATAATCTCAGTGATGCCTT
TCAACAGAGATTTACTAAAACCCCTTCTCTTGTTAATGGCTTCACCAATT
TATATGCCATGGTATGTTTTCTATATACTCTTTAAAATTTTCAATTACCT
CTATAATCCTGTTCTTATTAAATTTTTATTGGGTTCTTTCAGTTTGATTC
GCCTGCTTAAGTTGGGGGGTTTAGTTCTTTTGTTGGTGGGTTTTGAATCT
TGGGTTGTGATGAGCCTTATGTTCTTGTTACTTTTGGGAATTTTTGTGAA
GCTGATATTGAGTGATAGCCCTGCTCGTAATTTAGACTTGTTGGTAGATT
TTGATGCGTTTATAAATCAAGTGCTTTTCATGGTAGATTTAAATCAGAGT
TATGTGTATGATACATATATTTGCATTTGCGCACGATTACTGGTGATGTT
ATTGTTTGTCTTCTTCAAGTTCTAGTTAACATGTGAGGTGTTGGGGTTTA
AACTTTATTGTTAGTGAATTAAAGTGATAACACTGCTTTTAATATATGCT
TCTTGTGTTGATCAAAGTTTAAATAGGTTAGTGATCTTTGTAGCTTCTAT
CTAGGCAGCAGGCCTAGGTAACGTGGTATATGATACATTGTATGAGTTTC
TATACAGGATGAATTGGAACTTAACTGATTAACTCAAAATATCTGATCAA
CTTTATGTTCAGTTTGCTAAATCTAGAATAAGGTATACTCATGCTGCTAC
CTTTTGAATTCACAGATGAATAAATTTGTGTTTCATATGCATGCCACATT
TGTTAGGTTTAGCATAATGCAAGGGGATTAGGATGAGACAGTAGAAGTAA
TTATTACAAAAACAAATTATATGATGTATTTATGTTCATAAGTTCTGCAA
GCTCTAATTTGGTCAATGCTTTGTCAGTTGTGTAATCCTAAATATTTATT
GTAATACATTGGTAAATTAGAAATTTTAGGTTTTTTTGCTATTAGATTAT
TCCAGTCTTGGTAGTACGTATATGATCCCATGGTTGGCCTTTTGTAGGAG
GTAGATCCCACTGTGGAGCATGAGGACGCAGTGGGTACTGATGGGATGGA
TGGTTTTATATCTGACTTATCAAATGCCATTCCTGGTATTGATGAGGCTA
TGAGCTTTGCTGAGATGCTGAAGTAAGGACCATCCTCCAGCTTATTTGAC
ATTAATGATTAAGAGTTTATGTGATATATCTTCTGTGCAGGCAGTAATGT
AGTCTCATTTGTAGCTAAAACATAAAAGAATATACTTGCCATTTTTTTGG
TAGAAAGCTTAATAATTAAGCCTCAACAAATATGTAACAAGTTTACACCA
AAAGTGTGTGGACTGCTTAGAATGAGAAATATCTGTTTCTATTCCAGGAT
ATGTATACATGTACACAACAAGAGCTGCATAGTCAGTAGAAGCACCCGTC
TACATTATCAAATCCTTACATATAGTATAAATTTTCCTCATCTATTTCAT
ATCGTTCCATATTATTTGTAATAATTTGTCAATATTTGTCACCCCTAAAA
ATGTTTTTTTAGGATCATCTTATTCTTTACTTGTGTATACATGCCCATGA
GTAAAATCATATATCTTTTGTCCTAAGCAGTACACAAATTTGGTTTAAAA
CTGTTGCATATTTGCAAGTTTAATGCTTATTTATATAGCCTCCTAAACTT
TTAGTTATCCTGGTTTTCTTTAAGTTTATGACTAGCATATCTCTGATCTA
AAACATAATGTACATTTCTTTCCATATGAATACCCCTCTCATACAATCTT
CTTCATGTACTTACATACTTTATAAATACTTTTTGTAGATTGGTGCAAAC
AATGGACTACTCTGTTATAGTGTTTGATACAGCTCCCACTGGGCATACAC
TTCGGCTTTTGCAATTTCCTTCAACATTGGAAAAAGGTCTTGGGAAAATT
ATGAGCTTGAAGAATAAATTTGGAGGGATGTTGGGTCAGGTTTGTTATTA
AGTAAAAAAAGATATATAGTTTTTCCTTTTAGAGAAAAAATTAATCGGTA
ATATTCATGTTGGCTTTGGCTTTAATATATATTATGCCATGGGTTAAGCT
TAGTGTCCTCTGTATTTGACTATAATGCAGTTGAACCTCTTCACCTCAAT
AGCCTGGGGCTGTTAAATTTCAATTATTATCGAGGATAAAAATACATTGT
CTCTATTATGTTTGGGATGAATGTAGATAATTTGAATATGAATATATGAC
AGTACAGTATTAATTTATTGAGCTTCCACTGTATACTATATGATTTAATA
CCATCTTTATCTTTTGGCATACGCAAATGCTTTACATATTTTGCATCTTA
ATTAGCTGTTGCACTTGAACTTTGCAATATCATTCTTTATCTGGCTATAT
GTACTATTCTTTATCCAGCTATATGTTCCAAGATCACATATCCATTTTTT
GGGACTTGAGGAAATTTTTTAGTATAGTCCAACTATGTGCGTTTGTTCCT
TACAATCGCATATTGCTCGAATATGTGGAGACGCATGTAATTCTTGGCTT
TACTGGAAGCCACTAATGTTTTTTTTTTACTAATCTAGAAGTAAACCACC
ATATGACAGATTCTGTTAACTGTATTTCTGTTTTTGATGGCTGTAGAGTT
GCATTCTTTTGCTTGTTTTTGTAGTTGCTTTTTTTTTTCCCTTTGAGTTC
CCTAAACAGCCAAATTACATGCCTAGCTTTAGTCTATCATCTCTTTTCAT
TTTATAATTAAAATGAAAAAAAAAGTGCTTTTACAAAATTTTGGTGCCAA
GAAAACTATGGCGCTATAACAAACAAATGGTAGAGTGTAGGGAGTAGAAC
ACGGGAATTGTATTTGCTATATACGGATTCATATATGATACATGCATAAT
GCATTGATAGTTGTTTACTCTTCGGCATTTTTCTTGTGCCTTCTGCTGAT
AATATCTCTATTATTAATTTGTCTCGTAATGTAATGTATCACTTGTGGTA
TTTATATGGCAGATGACTCGTCTCTTCGGCCTTGGTGATGAATTCGGTGA
GGATGCAATCCTAGGAAAGATTGAGGGTATGAAGGATATAATTGAACAAG
TGAACAAACAATTTAAGGATCCAGTAAGATATTCTTATATTCTCTGAGAA
TAGTGCTTATTAATGGAAGGAAACGACTACATCAATTTTATTTAATTTTT
CTAGATCAGCTACATCAATTTTATTATAACCCAACTAAACTTTTTTCAGT
AAGCATTTGTCTGAATCTGACTTGAGCATCCACTGCTCCAAAATTTATCA
TTTAGATTTTGCAATTGTCAGTAATTCTTCTGGTAAAGAGACTTAACTGA
AAATGTTTTTAATACAAGACTCGATAATTTCTCTTTTTATTTTGGTACAC
CATTTTTTTGTATAATTTCTTTTGCATTATCGTTTGATCTGTCAAATTGA
GGCCAATTTTCTTGTTTAACAGGATATGACAACTTTTGTTTGCGTATGCA
TCCCGGAGTTCCTCTCCCTATATGAAACAGAAAGACTGGTGCAGGAACTC
AATAAATTTGAGATAGATACACATAATATTATCATCAATCAAGTACTTTT
TGATGACGAAGGTATTGCTTGAGTAGAATTTGAAGTCATCTCTAGATCAG
TTTATGGTTGCATAGAACAAAACTAACCACTTTTAGGACACTTGCAATTG
TAGTTGTTGAATCGAAGTTGCTCAAAGCTAGAATGAAGATGCAACAAAAG
TACCTTGATCAGTTCTACATGTTATACGAAGACTTCCATATCACTAAGTT
GCCTTTGCGGCCAGAAGAGGTATACTAGGTTCATGGCTTCGGCTACTTGC
ATATAGAGTATATTGTATAAACATAATAAGCAGATCATGTTATCCACATC
TTTGTTTATACCTTGGGAATGTTATACTTGAACAGAACACTATGTAAAAG
TATTTGTAAACTATTGCATGATAAAATCACATGAGTAGGACTGTACGAGT
TGCATTTTTGACCACACAACAGGGTATTGAACAATCCCTTACGAGGTTAA
TTCTTCTGAATTCTGATGGAGCCATTTTATCTTATACAGTGGGGTATTTT
TTTGTTTCTGTGGGCCTGCATATCCTCTCACATTCATTTTTGATGTTGCT
AGATTCCACCTTTTCTGATTTATAAGCGTTTTTTGTAGGTTTGTGGAGTT
GAAGCTCTGACTGATTTTTCTAAGAATTTTTTAACGCCACACAAACCTGC
CATCACCCGGGGTACCATAGAAGAGCTGGAACTGAAAATATCAACTCTGG
CACAGCAGTTGAAAGATGCTGAAGCCGAACTAGAAAGACTAAGGAAAGGG
AAAACAAAGGCATGATTAGCATGAAAGTCACCTCCATCTTTTCATGCACC
GATAAACATAGTTTGCAGAAAATTAGCTTTCCCCGGATTGCGGAAGATGT
ATAATTTGTTTCAGTTATGAGGAATAATTTTTATTAAAAGGCAAAGCTTT
TATACAATTTAGATTACACAATAATTTGAGTTTGCTTATGGTCAATAGAA
TGGTATAATGTTAGTCATGCCAATTGTGTGATCTCTAGTGCTCAAGAATT
ATCATATAGCCATGTACACTTAAATGCTACTATGTAGTTTCATATACTGC
TTTTCTATTATCATGGAGGTAAGAAGAAACTGTAAAACCAGCAATATAAA
TATACCAAGAAGATCAAAATGTAGGCTTTCAATGGCTGAAGTTTTCACAA
TTTCAATTATTATGGAGGTATAGGGCTGTAACTCGAGCCGAGCCGAGCCG
GCTCGGTTAACTAATCGAGTCTAACTCTTTGCCCGAACTCAACTCGGTTC
ATTTCACGAGTCGAGTCGAGCCGGCTCATTTAGCTAAACGAGTCGGTTTT
AACGAGTCGAGCGAGCCAGCTCGTATAGTTTTACACTTAATCGAGTCCAA
ACCTTTATCCGAACTCGGCTCGTTTAATTTCACGAGTCGAGGCGAGCCGG
CTCATTTAGCTAAACGAGTCGGGTTTAACGAGTCGAGCGAGCCAGCTCGT
ATAATTTTACACTTAATCGAGCCCAAACCTCTACCCGAACTCGGCTCGTT
TAATTTCACGAGTCGAGTCGAGCCCGCTCGTTTAATGGCTCTATGGAGGT
AGGATCATAAAATAAATGGCTCTTTCATCTTTAAGCCTCGGACAGGTCCG
GTGTAATGCTATGTGAATCATGGATGCACCAACACTTAATAAATTATACA
TGACCGCAGATAAATTAAGATTTACAAGTAAGAGTATTTTACATTTTACA
CAAACCAGTCGAGAAAAGTAAAAATCTGCTTCTTATGAAAAAAAATCATA
ATCACGATTGACCAAACATGTACTCCCTCCGTTCCACCAGATTCTTTACA
GTTTCCTTATTTGGCCGTCCCACCCATTTCTTTACATTACAAAACTTTCC
TAAAATAGTTAATGGGTCCCACTACTTTCCCACTTTTTCTTCCTTTTCAC
ACTACTTTTACCCCCACTATCTCTCTTTTATATATTAAAAATCAGTGGGT
CCCACCACTTCACCCACTTTTCTTTCTATTTTCTACTACTTTATACATAT
TTCTTAATCTCCGTGCCCAAACCCAATTCTTTATTTTCTACTACTTTATA
CATATTTCTTAATCTCCGTGCCCAAACCCAATGTAAAGAATTGGGTGGGA
CGGGGGAGTACATAATAATAAGTTTAAATTATATTAAATTAGTTCAAATG
TTTATAATTTTTCAAACCAAATCAAATTTCAAATAAATTTTTAGAATTCT
GAATACACCGAAATTTCGATTTACTTTTAAGAATCCATAAATGATACTCC
CTCCGTCCCTATTTATCTGTCCACTTTGGAAGTGATAATTTGTCCCTATT
TATCTGTCCATTTATACTTTCAAAACTAATTTAATGATAGTTTTTCAAAT
ATATGTCCATAATTTCAATTTTCAAGGCTTGACTTATTTAAAACTTGGTT
GAATTCATGTTTTCAAGACATAAAGTAGGGGTATTCCACCATTTTCAAGA
TATTAATTAGAGGTATTTAATGAAAAAGTTTATACAATCAAGTATTTCTT
GGTATGTGTTTTTTTTTCCAAAATGGACAGATAAAAAGGGACGGAGGGAG
TATTACAGTGGCGCATTCCTCGGTCCATTTGGACAGCAATTTTATATTGT
ATAAAAACAAAATCAACGGTTGGAAATAATTCATATGCGATCCAAGTCGA
AACACCCAAAAACGTCCTCACATCTCTGAAACTGTAGATACAATTCTGCG
TAAGCATACACTACCAAGATATTACATCGAAGAGTGTGAATATACTCGCA
TCTCGTATGCTTTTTACTAAAACGTTTTAATCTTCAGTATTTAATTTTGC
ATCTGGGTCTGAAGCAAAAGTCGCCAAGTTTGAGCTAGGGTTTTATCATC
CTCTTTCTTGCGGAGATAGATACAGATTTTGTATGTATGGAGGCTTATAA
GAGATGGGTCAGGACAAATAAAGAATATGTTCATTCTCTGGAGTCTCTTT
TTAATGTAAGCCCTTTTTATCAATACATGTTTTGTACCAACTGATTGACT
ACTGCTCAATTATTATGCTTGTGTTGTTTGACTTGTTTCTTGGCTCATAA
TTGATCTTGTTTGTTTGATTATATGTGTATTTTGGTAATCTTGTTGTTGC
TACTTAGAATATGTTATTGTTAATTTATTAGTTCAAGAAAGCAAATTTGT
TAGCAAGAGTAGTGTTACATAAAGATTGGAACTTATGGTGGGAGTCTGCG
GCTCTAAGACATGTAGAAATATAAGGAGATGGCTTGAGGCTAATAACATT
CTTTCTTGAGATAAGAAATAACTCGGGAATGAAATTATTGATGTTGTTCC
TTGATCCAATTTCAGGGATCATAGTTCGTGAAGATTAAATTAATAATTGT
AATTAATTTGCACTCGTTTTTAGATTCGAAGAAGTACGTTTATATGCAGG
GTGGCTAATCATGTATGCCCAGCATGGTTTGTAAGTTTATTATGCTAGTT
CTTTAATATTGTCCATAAATTAATATGTACATCTGGAATTCTCATTTTGA
AAGGTTACTATATAAATATGGATGGAAGAGAGCTTATGAATGCCAATTGA
AACCACAATTAAATCATACATTATATTATAAATTTATATATATATATATA
TATNTATATATATATATTGACTGTGTGAATGTGGGGTGATTTCTGTCTTT
AAATGCAAACCTGTTAAACTCCTCCTTGCTAAGTTAGATATCTGTACCAG
GAGTTTATGCACTTGCAAAAACTTATGATGAGTATTTTGCTACATTTCTT
GTTTTTCACAAATTATCTTCTTGTGTTTCTTGTTTAATTGATTATTTGTC
TGGATATTAACATGTTTCTTTTATTGTGTCATACATGATCGTGTACTCAG
GGCTTGACATGGCTTCTACCAGAGCGGTTTTCTGAATCTGAAATTGGACC
AGAAGCAGGTTTTGTGAAGTTTTGGTAACACTGATTTTCTTCTTGTTGCC
CTAAAAGTAACGGAATCTATTTATTTTTCTTTAAACAAAAATCTTATGTA
ATTCTGACCTTGTGACTTTTAGTGTGGGTTTTAATTTGGTAAAGCCCAAA
AACCCGAACCAAACACACCTAGTATGTCTGAATTGGATGAGGGGTGATCA
AATATTAGCAGACCTTACTCCTACTCCAAGTAGAAAGACTATTTCCGAGA
AGGCTCCAGCTTGAAAAAAAATATTGTGCAGTTGCGAAAATTGTGGGAAT
CATAAAAATATTTGTAAAAAGTATTCAAAAAAATTTGAAGCTCGAGTATA
TTGTAATACTTCCACCTACATTATTGTCCAGCATTTATATTTTCTGTGTT
AGATGGGGTTTGTAAAATGTGCAAAAGTTACTATAGTTCATCTATTTCTT
GTATTAACTTTTTTATGTAATGATTCTAGTATATTCACTTATCATAGATA
GATATTTTAAAAAAATTCGATTGCCTGATTTAGTTTTATGTCAGATGTTC
AAATTCAGTACATGAATTTTTGTGTTCATCTCAGTAGTCAAGTTAATTGA
AAATAAGATTGATGTGCAGATATTAAATTTTAGATTGAGATTTGAGATCT
AAAAGAACTTTCGTGGGGCAGATTATTGCCTCAGGTTTATTAACAGATTT
TTCGTTCATTACTATGTTTTGTTGTATTAATTGGTTTCTCTACTGAACAT
TTTGTAATTTAATCTACAGTGACATCAGTTTTGGGAATAATCACAGCTAT
CAATGAACATATAATTGACACAACCCCAACACAATTGCATGAACGATCTG
CTAGCCCGTCTTCCTTTCCGTATTCGTTGTGCATAACTCTGCTTAAAGAC
TCTGAAACATTTGTTGAAGTTGCGGGACAACAATATTATGGGGAGGACAA
AAAGTGGAATTTCATAGCTGTCACAGAGGCCATTAAGTAAGCGCATGTTA
CTCCAGTTTGCTAATTGTTGTAATATATACTCAACAACTTGTGGACAGTA
ACAAATTTATGTATTCAATCACATCAGAGCTTTAGTAAGACTGGCCTTGC
TCCGGAATCATGGGTATAAAATGCTTCTCCATGGAGGAGAGAATTCAAAT
GAAGGCCACGAATTAGATTCCTCGAAGCTCCATGCTGGATACGGGAATCG
AACACAGAACAGACAGCATCTTGGGCAGACACATCTTGAAGGGAGAGCAT
TGTCCGCTTTAAGTAGGTTTGGAGAAAATGCTAGGAGGGTTTCTGAGCCA
GCATGGTTGCGCAGGGTTCAACACCAGCAAGCAATTATGGAGCCTCCAGG
TACCTACTGTTTCTTAAGTTGTTTCCTGGATAAGATTCATATTAGTTTTC
AACTCTAAGATTGGTACAAATCCAATACAGCTGTGGTGGATAAGAGACCT
ACCCTTTCCAGTATATTGTCAGAAAAGGGCCTTCCTGGAGGCTTATTTGT
GTTGGGAGAGGCTGCATATATTCTCAGGCCACTTATATATGTTTTATTGA
TACGGAAATATGGAGTTCGCTCATGGTTTCCTTGGTCAGTCTCGTTGGCT
GTGGACTTGATGGGAATGAGCATTCTTTCACTTGCCACAACATCGTGGCG
TACTAAGCAAAACAGCAACATTCAGCTATCAAACCCCGAAAAGAATGAGG
TAAGAATGCTTCTCATTTCTTTGGTAAAAAGAGTGCACTTATTGATGAAC
ATTTGTTCTTTGTCTTGGAGACATAAAAGGAAATTAGGATTTGATTTGTA
ATGTCTCCAGCTTCTTCTATATTACACAGTAGACACTGATAAATCAGACA
AACTTGAATTTGATCCACTTAAAAGAAATGAAACTATTTGCAAATCTTTC
TTTGAACTATTAGATTAATGTTGCAGCTTAGTATTGGGTATTTTTGCTGA
GACTGTGTTTCTGTTGCAGTTAAACAGGCGGAAGATACTATGGGCACTTT
ATCTCATGAGAGATCCATTCTTTTGCAATTATACTCGGTAATTATGTTTT
TAATTTTATACTCTAGCTGATCATTAGGATTTTGCAAAAAAGAAAAAAAC
AGAAGGTATTAGACCCTGATTATTTTTTTGTATATTTAGGCAAAGACTTG
AAGGCACAGAAAAGCTCTTGCAACCTATACCCGTCATTGGCTTTCTTGCA
GGTTGGTTGATATTATATGTGTGGTTCGGTTCATTGTCACCACCTTATGA
ATTTATATAGCTTGTAACAGATTGTTGATCTAGCATTGTTTTAATCTGCA
GCAAAACTAATTGAGCTTATGGTTGGAGCTCAGACGCGCTACACTTACAT
GTCTGGTTCATGA

Sequence Length:

10013

Sequence Checksum:

317863e547a8f783f26047c8b2693d0f

View location in JBrowse:

DCARv2_Chr2:29844573..29854585-

Cds:

>DCAR_006900cds ATGGCAGAAACAGAAAACACATTAGAAGGGTCAGTAGAGAACATACTAGA GCAAGACACCCTCAAGTGGATATTCGTAGGAGGCAAAGGGGGTGTTGGCA AGACAACATGTAGCTCAATCATATCTATTCTTCTCTCCAGGGTCAGGTCC TCTGTTTTGATTATCTCTACTGACCCTGCTCATAATCTCAGTGATGCCTT TCAACAGAGATTTACTAAAACCCCTTCTCTTGTTAATGGCTTCACCAATT TATATGCCATGGAGGTAGATCCCACTGTGGAGCATGAGGACGCAGTGGGT ACTGATGGGATGGATGGTTTTATATCTGACTTATCAAATGCCATTCCTGG TATTGATGAGGCTATGAGCTTTGCTGAGATGCTGAAATTGGTGCAAACAA TGGACTACTCTGTTATAGTGTTTGATACAGCTCCCACTGGGCATACACTT CGGCTTTTGCAATTTCCTTCAACATTGGAAAAAGGTCTTGGGAAAATTAT GAGCTTGAAGAATAAATTTGGAGGGATGTTGGGTCAGATGACTCGTCTCT TCGGCCTTGGTGATGAATTCGGTGAGGATGCAATCCTAGGAAAGATTGAG GGTATGAAGGATATAATTGAACAAGTGAACAAACAATTTAAGGATCCAGG CTTGACATGGCTTCTACCAGAGCGGTTTTCTGAATCTGAAATTGGACCAG AAGCAGTGACATCAGTTTTGGGAATAATCACAGCTATCAATGAACATATA ATTGACACAACCCCAACACAATTGCATGAACGATCTGCTAGCCCGTCTTC CTTTCCGTATTCGTTGTGCATAACTCTGCTTAAAGACTCTGAAACATTTG TTGAAGTTGCGGGACAACAATATTATGGGGAGGACAAAAAGTGGAATTTC ATAGCTGTCACAGAGGCCATTAAAGCTTTAGTAAGACTGGCCTTGCTCCG GAATCATGGGTATAAAATGCTTCTCCATGGAGGAGAGAATTCAAATGAAG GCCACGAATTAGATTCCTCGAAGCTCCATGCTGGATACGGGAATCGAACA CAGAACAGACAGCATCTTGGGCAGACACATCTTGAAGGGAGAGCATTGTC CGCTTTAAGTAGGTTTGGAGAAAATGCTAGGAGGGTTTCTGAGCCAGCAT GGTTGCGCAGGGTTCAACACCAGCAAGCAATTATGGAGCCTCCAGCTGTG GTGGATAAGAGACCTACCCTTTCCAGTATATTGTCAGAAAAGGGCCTTCC TGGAGGCTTATTTGTGTTGGGAGAGGCTGCATATATTCTCAGGCCACTTA TATATGTTTTATTGATACGGAAATATGGAGTTCGCTCATGGTTTCCTTGG TCAGTCTCGTTGGCTGTGGACTTGATGGGAATGAGCATTCTTTCACTTGC CACAACATCGTGGCGTACTAAGCAAAACAGCAACATTCAGCTATCAAACC CCGAAAAGAATGAGTTAAACAGGCGGAAGATACTATGGGCACTTTATCTC ATGAGAGATCCATTCTTTTGCAATTATACTCGGCAAAGACTTGAAGGCAC AGAAAAGCTCTTGCAACCTATACCCGTCATTGGCTTTCTTGCAGCAAAAC TAATTGAGCTTATGGTTGGAGCTCAGACGCGCTACACTTACATGTCTGGT TCATGA

Pep:

>DCAR_006900pep MAETENTLEGSVENILEQDTLKWIFVGGKGGVGKTTCSSIISILLSRVRS SVLIISTDPAHNLSDAFQQRFTKTPSLVNGFTNLYAMEVDPTVEHEDAVG TDGMDGFISDLSNAIPGIDEAMSFAEMLKLVQTMDYSVIVFDTAPTGHTL RLLQFPSTLEKGLGKIMSLKNKFGGMLGQMTRLFGLGDEFGEDAILGKIE GMKDIIEQVNKQFKDPGLTWLLPERFSESEIGPEAVTSVLGIITAINEHI IDTTPTQLHERSASPSSFPYSLCITLLKDSETFVEVAGQQYYGEDKKWNF IAVTEAIKALVRLALLRNHGYKMLLHGGENSNEGHELDSSKLHAGYGNRT QNRQHLGQTHLEGRALSALSRFGENARRVSEPAWLRRVQHQQAIMEPPAV VDKRPTLSSILSEKGLPGGLFVLGEAAYILRPLIYVLLIRKYGVRSWFPW SVSLAVDLMGMSILSLATTSWRTKQNSNIQLSNPEKNELNRRKILWALYL MRDPFFCNYTRQRLEGTEKLLQPIPVIGFLAAKLIELMVGAQTRYTYMSG S*