Resource Type:
Gene
Organism:
Name:
DCAR_008849
Identifier:
DCAR_008849.gene
Locus Tag:
DCAR_008849
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_008849, is a part of gene, DCAR_008849. |
| The genetic_marker, MK009963 3_1866233, is located in gene, DCAR_008849. |
| The genetic_marker, MK007528 TP134946, is located in gene, DCAR_008849. |
| The genetic_marker, MK017372 3_1867421, is located in gene, DCAR_008849. |
| The genetic_marker, MK017373 3_1867496, is located in gene, DCAR_008849. |
| The genetic_marker, MK017374 3_1867652, is located in gene, DCAR_008849. |
| The genetic_marker, MK017375 3_1867688, is located in gene, DCAR_008849. |
| The genetic_marker, MK009964 3_1875131, is located in gene, DCAR_008849. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_008849 | DCAR_008849.mRNA | mRNA | DCARv2_Chr3:1865743..1867963 |
Sequence:
ATTCACGACAACTTGCAAAGCTCATTGCAAAGCTCAAGACGACAAGACCG
GTAAATAATTCGGTGCGATTGTAACATCCTTACTCTTTACTGTTGTCTGA
AGTCAGAATTCATGTAATTATCATAGTATCAATCTGCTGTCTAAAATCTG
AATATATGTATTTATCATCGTATCAGTCTCGTTCTGTAGTAAAATTAATT
AGTTGTCTGTAATATATATGTACTTTTAATTTTAATAATGTTATTCAGGG
CATTTTGCATTTGAATTCTTTAGTTACCAAACCCTAGTGCTACATTTCTC
AAAAATGATGAGATACTCTGTCGATTACCCGTTACGCCTCTTCTTCGTTT
TCGATGTGTGTCGAAAGAATGGTGTGGCCTTATAGATAGCAATGCTTTTG
CCAAGAAACAGCTTAGGAATACCCTTGATTGCAATGCTGGTCTTGGTCTT
ATGATAGTGGTCAAACGTAAAGGTGATCGAAGGTTTTATTTGGCGGGTTC
AGATTCTTTAGATGATGATGAATCTGCTGCTGTTGTGGAAATAGATGATC
CGCTCAAGAGTGTGCTATATAATGCTCATATTGTGGGCTCTTCGAATGGT
TTAATGTGTGTGTTCAAAAATGTGATGGATGTTTTTGTGTTGAATCCGAC
AACTAGGAAGTATAGAAAGATAGCCCGTGTGCCCCCTGAGTTTTGTCGAG
CTATTATGTGGAAACCCTTATGTGGATTTGGGTATGATGAGGTTGATGAT
GATTTTAAGGTTGTCATGTTTGCAGAGCCTCATTTTTTTCGTGGCTTAAT
AACTGTCTACAGCCTTAAAACCAATACTTGGGCAGAGGTTCAGGATGTTC
CTGATGACATTCGTTTCACTTTGACTGAAACTAGGGCCTTATTTTCAAAT
GGATCTCTGTATTGGATGGCACTTAAGGGATTGGATGACCAACTCAATTA
CAAGTTTATTATTGTTGGCTTTGATCTCAAACTTCGACATTTCAGGGAGG
TCCCTTTACCTCCTCTTGAGGGGGCTCATCCAGGTTTCAGTAACAGCAAT
TTGGTTGATATAGGAGGATGTCTTTGTTTTCTCGACATCCTTGATTCTCA
TATGGATTTGTGGTTGATGAACTATCCTGGGGCAAAAAGTACTTGGCACA
AAGCATTTTCTGTGAAGAAACAGGAAATGCCAACACACACTTCATTCTCT
AAACTTGTGGCATTTTCCAGAAAACGAGAGAATATACTCTTATGTTGTGT
TTGGTTGGGATGAATGAACATGGAGAGAATGGAATGAGATTTGAACTATA
ATTTTATTGAATGTATAATAATTTCATTCCTTCCACCATTCCATTCCTAA
TATACTTAACTAGAGCTCAAACCTTTCATTTTGTGAAGGAATGCTTCATT
CCTTATCATATCTATTTTCTACCCAAATCTTATCATACAAAATTTGCACT
CACTCATTTTTTTTTTCAAAGTCCTCTCTCATACACTCTATTATTTTCTT
TTATTTTTACTCATTCTATTCTATTCCATTCCATTCCATTCACCCCAACC
AAACACAACATTACAGGTGCGTGGCTTTCACACACAGCTTGCCTGGTATA
ACATTGACCGTAAGACAGTCAAGAATATTGGGATTCAGGGGATTCCTCTT
CAATATTGTTCATTTCCATACACCGAGAGTCTCTTACAGCTCACTGAGGA
TGAGGCGCTGCAGCAGACCATCAAAAGACAAGAAAAAGAGGAATGCATAA
AAATGGAGAAGGTACAGTATTTTTTGTTATTCGTGTGCTTTATAGTTCTG
TTTTTCTCTCCCATTCATCAAAACTTTAGCTTTTGGTACATTTCATTAAT
TTGTAAATTAATTTGGCTGAGACATCAATCTTATGTGCTTATGTATCGCA
GTATGTATTGTGAAGACTAATTAGAAACACGGTAGAAACAAACACAATAA
TTGTTGTGTTTCTGTATCGCAGTAGGTATTTTTTCTAGGTTCTATTACCT
CAGTTTCGAGTCACAGTCTCACAGAGCATGAAACAATATCTTATATTTTC
CCTAGCTGTTCCTTGACTTCAAAGTTGTACACATGTAATTGGGATATTCA
TTTGCACACTGTGGTGTACTTCATATCAATTCATATGACAGTTCCGTCAT
CTTAATGGTAAGCTCACATGTTTCTCTACTGTTTTTTCAATTGAGATATA
TATAAATTACATGAATAATGTCTAATCTGTTGCTCACCTTTATCAGATTA
ACATTTTCTTTCCTGGCAATTATCACATGATAATGTTTTGGATACTTTGG
GGAGCTCCTGTGTAAATTTTAGAATGCAATAATTGTCTACTTACTCTGTC
CTTCAGGCAAACGATCAATGGTTGCTGTTTCTGAGGGTCACTATCATATG
TGTTTAGCGTGGCAGAATAGATATCGAGTGATATAGAGAAGATCTATTTA
GCATGACAGAGCGTCATTTTTGTCTCTTTTTGAACCATTATTTTATTATT
TTTTTGACAAAAAAAAACCATTATTATTTTTAAATTGGTGTATACATGTT
GTTATGAACTATGAAGAGGGTAATCGTAGTCTATAATTCGTCAAACAAAT
GCCATTCTTTTTTCTTATTGTGATATTGCTTGCCAAGTTGAGACATATTT
TTCTTGATGGCGGAGAGTAGATAATTCATTTAAGGGCTAATATAATCTCA
GTCCAGAGGATCTAGTTCGAGGCTATATCACAATGCAGTATGACATGTTT
AATGTTGAAAGTTTGAGTCTTTATATGTGTGCTGCAACTTTTTTCTGCTC
GATATTCACTTCTGTAGGTTGCAGATCAGTAGAACTTTGCCACTAGCAAA
TTGAACATCTGAGTAGTTCACATAATTCTTTACTTCCACACATATAGTCT
GTCCAACTTCATTTCTTCTTATTGAAACTAAATGAACTTGTATGAGTTAT
AAATATTTATAATAATAAGAAATGATTTGCATTGTAATTGTGATCTTGTT
ACCTGACAATATGGTTTGCTTATAACTTTGTTTTGCAGGAATTCGAAGAG
AGAGAGGAGAGACAAGTAGATTTCAAGACAGTGGCTAGAATGGAAGGGAG
TTCATCAGAGCACTAGATATATCTTCATTGCTCCATGCGTTTTATTTGTT
TATTTAGTTGTCCAAGTGTTTTTAGAGGAAGCAAGTACTGCAGTTTGTTT
GATGCAACAGATGATGTTATTTAGATGGGTAATAGTTTTAACATCCTTAC
TCTTTACTTCTGTTTGAATATATATACAACTTCATCTTATGTATCCCCGT
AGTGAAATTTTATTAGTTTGTCTGTAATAAGATTCACACTATTCATACAA
TCATACTCACACTATTAATTTTGCTGCTACATTTCTTGAAAATGGCTCTC
CCTTGTGAGATGATTGCGGAGATACTTTGTCGATTACCCGTTAAGCCTCT
TCTTCGATTTCGATGTGTGTCGAAAGAATGGTGCTCTCTTATTGATAGCA
ATGCTTTTGCCAAGAAACAGATTAAGAATGCCCTTGATTGTAATGCTGGT
GTTGGTGTTATGATATCGAAACTTGATTTTGGGGGTGAAAAAAGGGTTTA
TTTAGCAGGTTTCGATTCGTTGGATGATGAATCTGTTTCTGTTGTGGAAA
TTGATGGTCCACTCAAGGCTTTTCTCTCTGTTGCTCATGTTGTGGGTTCT
TCAAATGGTTTGATGTGTGTGATCAAATATGTAACGAAGGATGTGTTTTT
GTTGAATCCGACGACTAGAAAGACTAGGAAAATAGCCTGCGCGCCACCTG
AGTTTCCGCGTTCCTTTAGGATGGGTGATAGTCATTTTTTTGGATTTGGA
TATGATGAGGTTAGTGATGATTTCAAAGTAGTCTTGATTGCAAAGTGTTA
TCGGCAGTTTCATGGCTTGATAGCTGTGGTCTACAGCTGCAAGACCAATG
CTTGGACACGGGTTCAGGATGTTCCTAGTAACATTCAGTTGCTTGGAACT
ATGGGTTTGTTTGCAAGTGGTTCTTTGCAATGGAGGGCAACTACAATCGG
AAAGATACGCAAGCATATTATTGTTGCCTTTGATCTTCAACGTCAACTGT
TTAAGGAGGTTCCTTTTTCACCTACTGAGACTTGTGCCGATTTCAATTAT
TTGGTTAATGCCGGTAATATCTGTGTATTCTTGAACCCTTTAATTCTAGA
TGGAATGTGTGGTTGATGAACTATCCTGGGGCTGAAAAAACTTGGTGCAA
AGTATTTTCTATGGAGCAACAAGAAATAGTCGATATTTATTCGTCCACTA
AACTTGTTGCTTTTTTCAGAAGTGGTGAGGATCTACTCTTAGAATTGCAG
TCACCACAACACAAAACTTGTGTGGTATAACCTTGACCAGAAGACAATCA
AGGATGTTAGGATTCATGGAAATCCTGTTCATTTCAATTCATTTCTATAC
ACGGAGAGCCTTTTACAGCTAACTGAGGATGAGCCACTGCTGCAGAAGCC
ATCTAAAGACAAGCTAAAGAAGAATAAACAAAACAAGAGAAGGTATAATA
TGTTCAGTTATTTGTAAGTTCTGTCTTCCTCTCCCATCGGCTATCTATCA
CTATTTTAGCTTTTGGTATATTTTATATGTTTATTTTTTTGTTTCCTGGG
ATCTTTATCTTGTGCGCTAACATATTGATAGGGATCAGTGTGTATCATGT
TTGGGTTATTTTGACTTGTGCATGATGCAGTTGTGAGATTTTTGTCTTTT
TGACTTATGTACTACATAGACGGAGGTTAATATTGTAGCTGTATAATTGG
ATCTGCCCCGTTATATTTTCTGGTGATAATATTGATTATTATTCTTGGAT
ACTGTATAATTTTCTGCGTTTATTTATTTACGATACATCATTCGACATCA
CTGTATTAGTTGGTACCTGAGTGTTGGCTAGTACACTTTATTATAGCCCA
GCTTTTATTTTTTATTTCTATATATATCTTGTAACTGCAGACTATTGAAA
TCAGACGACTTTTAATATGTATAAACTTTTCTTAGAATATTGATGTGCCA
TCAGTTTAGAGATAGCTTAGGGTAGAAATTGTCTGCTGTTCAATCTCCCA
AGGTTTTAATCACTGAATTTGATACTGTGAATCATTATTTCATTATTGTG
CTGCGTCAGACTGGAAAGAGATAAACTCCTGGGTGTTGTCATTGATAATT
TCATGCTCTGGCATCTGTTTCCTTTCTCCAAGTGGGCACATTCTTTTTAA
ATTTCCGAAACCTGACTTCTGTTCAGTTGGCTTTTTGTTACCGGGTCTTT
TTTCAAGATTTATTTCAGAACCCCTGTGTTTGATCAAACCCTTTTGTTTT
ATTAGAAAACAGGATCATTTAAATTCCAGGACTTAATATTCATGTTTCAG
GACTTTCAGTTTGTAACATATTTAAAATTTTAATGCTTGTTTGAATTCAC
ACCACTTCTTCACTTAGTTGCATAATATTCCATAGTAGTTGCATGTGCTT
CTCTTCTCATGGTCCAAAATAAAACTATTGTATTCCCACCCAATAATATA
GGTGAAGGAAAACTAGGGTACCAACTCAACTCGATTGGGACTCATGCACC
GGACACAGGTCACCTCTTCACTCTTCAATGTCTGAATAATCATCATACTC
ATCACTGTAGTAAGATCCTATCAGTTTTGTAATAATTTATTAAGGGCATT
TCTATTTGAATTCTAATTTAGCTTTTAGTTACCAAATCTTGATGCTATTA
CATAAAAATGGCACTTCCTTAGGAGATAATATGGAACTGCTTTTGTCAAG
AAACATCGTAAGACTACCCTTGATTGCAATGCTGGTGTTCGTTATATGAT
AATGAAACTTGGCGGTGACAAAACGGTTTATTGGGCGGGTTTTGCTTTAG
ATGACGAGTCTGCTGTTTTTGTGGAAATAGATGTACTCGAGTGTTTCTCT
CTGATGCCAAAATCATGGGTGCTTCAATGGTTTAATGTGCGTGTTTGAAA
ATGGAAGGAAGGATGTTATTCTATTGAATCCTACAACTAGGACGAGGGTT
CAGAATGTTCCAAAAGGAATTCGTTTCACTGGCATTAGGGGCTCATCTGC
ATGTGGATCTCTGCATTGGATGGCAATTGAGTGTCAATTGTCAAACCAAT
TGCAAGGATGTGATTGTTGGCTTCAATCTCAAACTTAAACAGATCAAGGA
GGTCCCTTTTCCTCCTATTGAGGGCTCATGCCCATTTCAATAGCAGAATT
GTGGTTGACGTAGGAGCATATCTTCGTGTTCTCGACAGCGATCTGTGGTT
GATGAAATATCCTGGGCTTGGAAGTACTTGGTATAAATTACTTTCTATGA
AGCAACAGAAAGTATTCGGAACTTGTAGGTTTTAACTTCACTCTACTTGT
TTTTTCCAGAAGTGGCGAGGATCTCCTCTTACAGGTGCACAGCGATTACA
ACGCCCAACTTTGGTGGTATAAACTTAACTGGAAGACACTTAAAAATGTT
GGGATTTGTGGGATTCCTCTCCAATTATGTTTTTTCCTATATACCGAAAG
TCTCTTACAGCTCACTAAGAATGACCTGCTGCAGCAGAAGCCATCAAAGA
CAAGTAAAAGAAGAATGTAAGAAAAGGTATAAAATGTTCTGTTATTTGTG
TGGTCTATAGTAGTGTGGTTGTGTCTTGTCCCATTCATTATCACGTTTAC
TAATATAGTTGCTAATTATAGTTCTATCTTTTCTAGGGATATATTTCTAT
GATTCTATCCAGAAGATCTAGTTTGGGGCTATAAGATACTTGAAGAATGA
CACGAAGTAGTATGAAAAGGTAGATTTTCTTCAATCTAATGCTCTTGCCA
GAGGATTCTTTATAGCAATCATGGTTATTTGTAATGTTGAAAGTCTTTTG
TTTATGTGCTGCAACCTTTCTCTGCTCGATATTCATTTCTGTGCGTTGCA
GATCAGTATAAATTCCCCACTAGCGAATTAAACACAGAGTAGTTCATTTC
TGTGGGCTGCAGATCAGTAAAACTTTCCCACTAGCGAATTAAACATGGAT
AAGTTCATGTAGTTTTTCTATTCTATGCAAAGAAGCTATCCAACTTGATT
ACTTTGTATTGAAACCAAATGAAATTGTACGAGTTAAAACATTTCTAAGG
ATAAATGTGATCTTGTTACCTGACAAGATGGTTTGCTTACACCTGCCACA
GGTGTCCCAGCTGGTTAAGACCGTGACTTTAGGGGCTTACCACCCCAAGG
TCATAGGTTCGCCTCCACTCGGAGGCACAGAACTAAGTAGACTGTCATTA
TAATTATTTGTTATTTGTGCGTGGTCTATGGTCCTATATTTCTCTCTCAT
TTATAATTATGATAGATTTTAGTGCATTATTCTTTCATATAATATGTTCT
ATTTTGGCCAGGATATCTGGTGCGGCCTATTTTTATAAACAGTATAAACA
AACACAATCATGTTTAGATATGAATTGTAGTATATATTTAAAGTTTGCAT
TGTTTGGGGGTTCAGTACTGGGAAGACTTCTGTTCCTCGCAATTGTTTTT
GGGTTTACTTGTTCCTTACTTGGATATATCCATTTTTTGCCTAGCTTTTA
ATGTTTTGTGATTCATTGTAGAGGCTTAATTAGTTTATTTATCTATCCTA
GATTATATTACCTCTGTTTCGTTTCATGGAGCATGAGACAATCTCTGATA
ATTTTCCTGGATGTTTGGTTAGTTCAAAGTTTGAACACACGAGATTGGGA
TATGCATTTGCAGTCCGTGCTGTACATTGGATCAATTAATACGACGATAT
CCTTATTGTAATGGTAAGATCACATCTGTGTCTAGTGTCTACTGCATTTT
TGTTTTGAGATATTTAAGAGTTGTGAAGGTGCTTAATATATTTTGTGCTG
CCTTTTGTATTCCTCACCTTCACCCAATATAAGTCCTTTTTATTTTACAA
TTTGATTTAGAATTGTCTGCAAGTGTTGTCTGATAGTCATCGGATGATAG
TGCTATGGGTACTCGGAAAAACTCCTGCCTAAGTCAGACTTGCCTGTAAT
CTCCATTGAAGTTGAACCATGCAATCATACAGGCGGTCAACACTTGTTTT
CTGTAATTTAATTTCTACGGACTAAAATAAAAAATCAAAACAAATTACAT
TTTTAATTATTAAAAATTGAAATCCAATGAGAAAACATTAAATCCTATAT
GTTGAGTGGAATATGACGACAAAGTTTTGGACGACAAGAGCAAATGTTTG
AATAGACAAGACAAGTCCACCTTACCATACAATTAAAGACCTATCACGTA
ATAGTAATGAATCTAGAGACTAGAGAGTGATTGCTTGTAATTAATAAGTT
AAACTAGTACTAAAATCTCAAGGAAGATAAATTTATTAATGTTGTAGTTT
ATATAATTAATTAGTTGTGAATATTTTAAGACATATAAAATATTATTTTT
TAGGGAAAATAGATTTTTTTGCCACTCAACTTATAGTGTTTTTAGAAACT
TACCACCCAACTAATTTTTTTATTCTTTTAGTCACTAATGTTAGGTTTGG
TTTTATTTTTAGCCACCAGCTTAGGTTTGGAATTGATTACTAGCATTATG
ATAATTTTTTGTATCATCATTTATACATAGTGATAGTATCTAATATTTTG
ATGATGTGTCGTATGTTTATATCCTTATATATAGCAATAGTAATATAAAA
TGAGCCGATGAAAAATTAAAATCAGGAATAATAGTAATTAGATTCTAAAA
ATTCAATAAATCATGAATATGAAATCAATGACTTCAAACAATTCACCCTC
TCTCATAAGATAAAGTGTAATTGAGTGATATGACGCATCATCTTTCGCTA
TTAAACTTTCAATGGACTAGCTCAGTCTAAGATCTTTCTTAAATTTATCT
TCAAAAATTTTAATAACTTTATCTTATTACAATTTTCGAGATAAATAAAT
AGAGAGGAAAACTTAATTTTCGATGATTGTCCTCTATATATAATGCATCA
TTTTATATTATTATTACTCCCTCCGTCCCTCTCATTAGTTTACAAATTTT
CTCTAGTGCTTAGCATGTATTTAAGATTCTTATAAAACATAGTTTCATAA
CTTATTTTTGTGTGTAAAAATTCAAACGCTGAATTTTCATTCGGAAGAAA
AAAAAATAAAGTTATATATGAAACTACATCTTTTAAAGGCCATATAATGC
GTGTAAAATTCTTATCATCCAAGGTAAGCGACCTTGAAGACATAAAAAGT
ACTATAAAAATACAAACATATATCAAATCATCAAAATATTACCGACTACC
AATATATTTTAATAATGATACACATAAAATGTAATGCTAATAATCAAATC
TGAACCTAACTTCAGTGTCAAAAAAAAGAGCTAAATCTAACACTAGTGAG
TAAAATAAAAAAATTATAGTTCAGTGGTTAGTTTCTAAAAACACAATAAG
TTTAGTTATAAAAAAATTATCATAATGCTGCTAATCAAATCCAAACCTAA
GTTGGTGGCTAATAAGAAAACCAAACCTAACATTAGTGACTAAAAGAATA
AAAAAATTAGTTGGGTGGTAAGTTTCTAAAAACACTATAAGTTGAGTGGC
AAAAAAATCTATTTTCCCTATTTTTTATAATATAGAAATTTTCTTCTTTT
TTTTTTGATAAAAATTTTTCTTAAAAAAAGTTATTTATAAAATTACACTA
TATAGAAGCCATTCTTAATTCTCAATTAAAATATTAACAACCCAGAGAGA
TAGGATTGAGAGAGCATAAAAATGTATATGTTATAGCTATTGTATTTTTC
ATATAATAATTTATATATAAACCAAAGAATACATGCTTTTCGGTTCATAA
ATCAATGACAACATAATTCAAATGCATCTATCTATCAAATAAACATTTAC
AAACCAACCAGAAAGTGAATTTGACATTTTGAGACTAATTTCCCAGTCAT
TTGTATATAAATGGCTGGGACACGGAGACCAATAAATTGTGTAAGATATG
AGTAAAGTTAGATGAAAAGTAGGTAAAATGGTGGGATCTATTAATATTTA
ATAATAGATTTGAGATACTGGAGGAAAGTAGTGGGTGTAATAGTGTTTAT
ATTATTATATAATAGAGATAGTGGAAGAAAGTAGTTGGTGTAATGATATT
TTATATTATAAAAGTTTACTATTTTTGGAATGTATACAATTGAGGGGACG
TCCCAAAAAGGAAACTGTATACAATTCATTGAGACGGAAGGAGTAATCAA
TATTCATGACAAATTTAAATAACCTTTTTTATTCAACATTTTTGGTGTGA
CGTTTGAAAAGATTTGTGCAACTTTTATTTCACTAAGCAAGATTTGTTCC
GTCAACTATTGCATTTTGCCATAAACCAACAAGAGTTTTTTTCTGAAACT
AACAAGAGTTATAATTTATAAACCGAAAATAACAGGACATTAGGTGTCCA
TTCAGAAGGAAAGAGCTACAGTTCAAAAAAAAATTAATAGCGGTCCATTC
AGATGGAAAGAGCTATAGTTCCAAAAATATTAATGGTGGTGGGGTTATCA
AAAAACTAAAAAAAAAAAACAACAACCTTTTTTTGACTGAAACATCTCAA
TTGCCTATCTCTATAATAACTCATCTCCTCGTAACTAAAAGTCTGGGAGA
AGTCTTCTTGTTTAACTACCTAAGAGTTTCATAAGGATGATCACTATATT
TGTAAATTCTATGAAGACATTTTTATAATTTTGAAAATTTTAAAAAAATG
AATAAATGAAAAGAGAAATTTTAGAAGGGATCTGTCCTCCATGTCTCTTC
CTAAATCCGCATCGGGCTCTCAACCTTTCTATTCAGATCTTAATTATTAT
TCTAAATATTACATCAAACTTAAGTGACGTGTTTGCATGCATATTTTATC
TCAGATAAAATAAGAAATTGTCTTCTACGCACATATAACTGTAATTTGAG
TTGGAGTTAACGGTAGACAAATCTTTTTCTTTCCTCAACATCAAATGATA
TAAATAAGTAATATATCAAATAAAATAGATACACATCACAATAATTATAT
TTAAATAAATAGTTTATAAAGAAATACAGTAAAAAAACTATTTTTTTTAA
ATAAATGAGGACGGCACCTCGTATGAAATGGGAATACACAACGAGAGGAC
TCATCTCAAAAGACATCTAAGAACACACAGGATGCTATAACTAGTAACAG
AAAAAATCTAAAAAAACAAAACCAAAATCTCCATCTAAGAAAATAAAATG
AAAAAATCCAAAAAAAAAAAAAAAAACTAGAAAAACACCGCGACTTCTCC
CAAATCTGCCAACCCCAAAACAAGCGACCTGCTCAACTCAAAACAAAAAA
GAAACCCATTACAGCAGAGAACCCGGGCTCCACACCTCCCACACCCAACC
AACCAAGCCACGCAATACTAACTAAAACCCCCAGAATACCATACCAAACC
AGTTCCCTACTTGAATCAAAAAAGCTGGAAAATTCAAAATTAAACTCCTA
TGCTTCCCAAAAAAAATAACAGTCTGGCAAAAACTATCCCATGCAAGCAA
TCAACTTAGCAAAAAAAATAAAAATGCAAGCAATCAATGAGACAACACCT
ATGAAGAAAATCAGCAAATAAAAACTCACACCAAAAAAGCAATCCCAGAC
CCCAACAAGTCTGCAACAGGCCCCTGCCCACACTTTCTACAGAAAATCGA
CGATCAGGCCTCTAAAATTGCAGCAAAAACTTGCTACAGCACCCAGAACC
GGAGATAAACAAACACCACCACCCCTGCAGGCTACAGCTCTGAAATTTAA
CCACCACCACTCAAAAACATACCAGCAGCACTCTAAAAACAAAGCCATCT
GATCACCAGCAGAGCATAAAAACAAATTAACACAGAAATCGGCCAGACTA
GTTTCCACCCATATCTTGAATAATATGTTTACTTAAAAAAATTGAAAAAA
ATTGAAAATAAATATTTACACAATAATATTTTTTTTATAATTATTTATCA
TGTAAACTGAGAGGTTGGTGTAGAACTCCTTTTTGAGATTCCTGACCAAA
ATGGTCAATTTGTAAGATGATTCCGTTTAAGTGGACCTTCCACAAAGCTT
CTGAGGATAGAATCATTCATGTCATGTAGGCTCCATAATCATGCATTATT
AGTTTAGTTGAAGAAAGCAAACCAATATTATTATTTGACAAGAAAAGATA
ACCATGCTATAATCAACAGCTAAGCGTCCCCATTAGTATGATTTATTATT
TTTGTTGAGTGATATGTACTGTTAACTCCCAATAATTATCCTTTTGTCAT
GAAGATGTAGCTGCAATAATTTCATGTCCTGCAGACTTCAAGTATGCAAA
GACATATTATTTAGTTTAGATTAGTCACTGTAATGCAAATTGCCGGGGGA
CTATCTAATCATGAATCTTACAAGAGCACGCAAGTTTGGTTTCGTTTATC
GTCATAAGATTCTCAGATTCGGATGTGTACAAGAATTTCGTGTCATGTAA
TTTCATGTTTTCACATGATCGTCTAGGCTTGAAAATGACTGGGAATCAAG
AAAGATTTATGTTATGAAGGATGGAATTAATATCAGAAAACGAAATGACT
AGTGCTATAAGAGTGGCAATTTCGGCTAACAGGTCTTGTTCGTGTCAGCG
ATCGGGTCGATTTCGGGTCAAGATAAAATAACTTAAAATTTGATAAAACT
GAAATTTGAAGTTATTAGAAATGAAATTCTAATCTTGGGTCATTTCGGTC
AATCGGGTGATTTTCGGGTTACTTTCGGATTTTGTCCCCGTAAATCAGAT
TGCGGGGTTGGGTCGAGTTTCGGGTCGTGTCTGATATTGCCACCCGTGCT
AATCCTAGATATTTGCTAATTTTTTCTTATCAGCTCGGACTTAAAATGAT
TTCCTTGCTAGTATTTAGCTAAAAGTTGGGATTTTAAAAAAACTGAATTA
AGGAATTCAGTGAGGACCGGAGCCTTGACTAGCCTCATCTTGATTCCGCT
AATGCATTTTAGTCCAACATTTACTGATTTCGGTAGTGTGTCAATAGAGT
GGAGCATTTGGCAGATTTTCTTCCATTCAAATCTATGGAGGTACAATCTC
CCCCAACTATTCGATTTTGTGGTTACAAACCATTATAATTCCACTTAATA
AAGCAGCTAAGCTGTAGCTAATAGACTGATTCTCAGTTGTACCATAACGT
GTATCCTAACGTAAGTACATGATAGGTTAACTCAGATATGAAGTAGATTC
TCACCTAACGTTAATTGACAACTAATTATGAACATAATTATCTTAAACAC
CGACGATTATACAATAACCCCAGTGGGTTCTGACACACCAAGGCTTCAAG
TGTCGAAACTGTATCAGAAGACCTTCCGTGTTAATCCTCATTTCTTTCTC
TTCCTGAGAAAATTCAGAAATACGATAGAAAAGATTAATTCCGCTCCTAA
TTGAACAATGTCACGTTTAATAAATCCCGATAGGTCTGCAACCAGGCGTA
AACAGACATACGTGATGTAAGAATAGGAAACAGTTGCAATTGCAAGACTG
TTGCGCTGATGTTAACTCTGTGAAATTCTCTGCACATGGGCCGTTATAGT
ATATGTCAATCATACATTGATTAGCTTACAAGAAAGACATTATAAGTAAT
TAGGCACAGTCATGATCACTTCACTGAAACTTGTTTAAGCAATTATCAGT
AAGTTAAGCTTAATTATGGCTTCATAACTAGGCTGACAGGTGCGCAATCA
CATCTGAATAAAACTAAATAACTAAATATTCTTTCCTAGGCCACAAAGAG
TTTATCAGTAAGAGCCACAGATTGATTGATTCATATTAGTTTTTAGCACT
TAGTGGGTCCAATGCATTATGAAACTTATCTACAAAAGCTGGAATGAGAG
TTCAGATTTTGAAGAACACTCATCTGAGAGTGCTTTTGCAAGTTACTGAA
CCCTGTCTTGAATTCTGGATTGGGTCCAAGAATTTGCAGAGGTGACTGAG
TGAATTTTGAAAAAAAAATGAAACTTTGGTATGTTTTATTTGTTGTACTG
GTGATATGCTACTATGGTTTTGCAGAAAGAAATATGCCGAAGAAGACATA
CATAGTTCACATGGACAAGTCCTCCATGCCCTTGAGTTACGACGATCATC
TTCAGTGGTATGATTCATCCATTAAATCAGTATCAGACTCCGCTAACATG
ATTTACACGTACAACAATGTCATTCATGGTTATTCTACAAGGCTGACCAC
TTCAGAAGCAGAGTCACTTGAAGGGCAGCCTGGAATTTTACTAGTCCAAG
AAGAAAGGATATATCAACTTCACACTACTCGGACACCAGAGTTTTTAGGA
CTTGATGAAAGCGCAGCAGTCAGACTTGAAGCAGGGGCAGTGAGTGAAGT
CATTGTGGGAGTGCTGGACACAGGTGTGTGGCCTGAGAGTAAAAGTTTCG
ATGACACTGGGCTTGGTCCAGTCCCCAGTAATTGGAAGGGGACGTGCGAG
GTGAGCAAGAGCTTTGCTGCATCAAGCTGTAACAAAAAACTCATTGGCGC
CAGATTCTTTTCACAAGGGTATGAAGCTGCTTATGGACCAATTGATGAAA
CACTGGAATCAAAGTCGCCTAGAGACGATGATGGCCATGGAACACACACT
TCCACTACAGCAGCAGGTTCAGCTGTAACAGGAGCTAGCCTCTTTAATTA
TGCAATGGGCACAGCACGCGGAATGGCAGAACATGCCAGAGTGGCCGCAT
ACAAGGTCTGCTGGCTTGGTGGCTGTTTTGGCAGTGACATACTAGCTGGT
ATGGAGATGGCTGTGTCAGATGGTGTACATGTCCTTTCACTGTCACTAGG
TGGTTCAGTTTCTGACTACTTTCGAGACACGGTAGCAGTTGGTGCATTTT
CAGCTATGTCACACGGGATCTTTGTATCATGCTCAGCTGGGAACAGCGGG
CCAACTCCTGAGAGCTTGTCTAATGTGGCGCCATGGATAGCTACAATTGG
TGCAGGAACTCTGGATCGCGATTTCCCAGCCCACACTATCCTTGGGAATG
GGAAGAACTTTTCAGGCGTATCACTATATAGTGGGAAACCATTATCTACT
TCATTAGTTCCACTGGTGTACTCTGCTAAAGCCAGTAACTCGACGAGTGG
CATTTTATGTATGACTGACAGTCTAGATCCTGAAAAAGTTGCCGGGAAGA
TTGTTGTATGTGACCGAGGGGGGAATTCCAGGGTACAAAAGGGCATCGTA
GTAAGAGATGCAGGTGGTATAGGGATGATTTTGGCAAATACTGACTCTTT
TGGGGAGGAGCTGGTGGCTGATGCTCATCTCATTCCTTCAGCAGCTGTGG
GACAGACGGCTGGTGATGCAATAAAGAAGTACGTGTCTTCGGATCCAAAG
CCAGTGGCCACAATCGGATTTTCTGGCACTCATTTAGGGATCCAACCATC
ACCAGTTGTGGCAGCATTTAGTTCAAGAGGTCCAAATCCGGTCACACCAG
AAATACTAAAACCAGATTTCATAACACCAGGTGTAAATATTATAGCTGGT
TGGACTGGTAAAGTTGGACCAAGTGGGTTGAAATCTGACACCAGGCATGT
GGACTTCAATATAATATCGGGCACATCAATGTCATGCCCACACGCAAGTG
GATTAGCAGCACTAGTGAAGTCGGCACATCCTGAATGGAGCCCTGCAGCT
ATAAAATCAGCGCTTATGACAACAGCCTACAACGCATACAAAAATGGAGA
ACCCTTAGAAGATATTGCAACTGGAATGGCATCAACACCGTTTGATTATG
GGGCAGGACATGTCGCCCCTACAGCAGCCCTTGACCCGGGACTTGTCTAT
GATGCAGATGTTCAGGACTACCTAGAGTTCCTTTGTGCCTTAAACTACAG
TTCAAATCTCATCAGGGTTGTCACAAAACAAGCTTTCACATGTGACAGCG
GTAAGCAATACAAAGTGGGAGATCTTAATTACCCCTCTTTCGCTGTTCCT
TTTGAGACAACCTCAGGAAAAGGGGGTGGCAGCAGTGAACCTGCAGTAAT
CAAGTACACCAGGACTCTGACTAATGTGGGTACTCCAGCAACATACAAGG
TTTCAGTGTCCTCTGAAACACGTTCCGTGAAGATAGCAGTTGAACCAGAA
CTACTAGATTTTAGCAGAACAAATGAAAAGAAGAATTACACAGTGACATT
CACAGCAACTTCCATGCCCTCTGGCACAGTCAGCTTTGCACGCATAGAAT
GGTCAGGTGGTAAATACGTTGTCAGTAGTCCAGTTGCTTTTAGCTGGACA
TGATCGAAGCAATGCTGAATAACACAGACCAACCATTGTAAATTATCTGA
TAGGTCCAAAGGGTTCGCCTCATCAAACCATTCATTACTGTACAGCATAT
CATTCTACAGCACTATGCAACCAAGAAGGAGATCTGACTGAAGATTTACC
AGCATATCACGCAAAGGAGGGAAGGAGATTCATTCTTGATACTTATACTC
AAGGATTCATGTGTGTATATTTCTATAGCTCGCTAAAACTGCTCAGACAA
GCGACAAATGGCATATCATGGCCAGCTGTTGCACAACTGATTTCAATAAA
TATAGCACTACACTTCTACTTTTTAGCAATCTTTCCATATATGTTCTGCA
AAGTCACACATTTGTGGCCAAAATGACACCTATAAGCACAATGAAGACTA
AAAGACATAATAATTGACATCCAGGATATCATGTCAGAATATCAGATCAT
CTTACAGAACATACATGAGGTATGAGATTTTTCATTGCAACTCAGGCCCG
ACTTATCTGGGGTCGAACCTTAAGCCAGAGCATTTCATATTACATTCATT
TTTGCCAGTACCAATCTTTACAAAAGAAATGCCTAATCTTCGACGCTGCT
CTATAGCGATCATAAAAACACTGATAAAATCTAGAGTTAGTACTGTATAT
TATCAAAGCAAAAAATTCATTATAAGGTAGAAAACTTCCAATTTTCCATA
AAATATTTAATTTTTATACAATTGTCTGTTTTACCTAAACATGCATTCTT
ACTCATTTATTTACCTGGAGACCCGCAAGAAACCTGACCGAGGCTTGTTG
GAAATGTATGACCCTCCGCGGGTAACCAATAAGGATAGATGGAAGTTTGC
AGGCTCTGGCATTCTGCAAATCTGCATCTCGCTCTGGTACTTACAATTTA
GTCCAACATAACTAGTACGATATCGAAAAAGAGAGCATGGAAAGAAAATT
GTTGTTTCATTTTTTGTGGTAAGCCATATTCCCGAACCAGCTAAGCATCA
ACATCAGATTAATATTTTGCAGTAGGAGCATCATCTTAATACATCAGTTT
AATGTCCACATGTCGCCCCTGTAGCATCCACCCTGGTCTTGTCTACGATG
CAAATGTTCAGGATTATGTGGACTTCCTTTGTGCCTTGAACTATAGTGCA
A
Sequence Length:
17451
Sequence Checksum:
9869b3f11da58811e86d2022a0b07bee
View location in JBrowse:
Cds:
>DCAR_008849cds ATGCCGAAGAAGACATACATAGTTCACATGGACAAGTCCTCCATGCCCTT GAGTTACGACGATCATCTTCAGTGGTATGATTCATCCATTAAATCAGTAT CAGACTCCGCTAACATGATTTACACGTACAACAATGTCATTCATGGTTAT TCTACAAGGCTGACCACTTCAGAAGCAGAGTCACTTGAAGGGCAGCCTGG AATTTTACTAGTCCAAGAAGAAAGGATATATCAACTTCACACTACTCGGA CACCAGAGTTTTTAGGACTTGATGAAAGCGCAGCAGTCAGACTTGAAGCA GGGGCAGTGAGTGAAGTCATTGTGGGAGTGCTGGACACAGGTGTGTGGCC TGAGAGTAAAAGTTTCGATGACACTGGGCTTGGTCCAGTCCCCAGTAATT GGAAGGGGACGTGCGAGGTGAGCAAGAGCTTTGCTGCATCAAGCTGTAAC AAAAAACTCATTGGCGCCAGATTCTTTTCACAAGGGTATGAAGCTGCTTA TGGACCAATTGATGAAACACTGGAATCAAAGTCGCCTAGAGACGATGATG GCCATGGAACACACACTTCCACTACAGCAGCAGGTTCAGCTGTAACAGGA GCTAGCCTCTTTAATTATGCAATGGGCACAGCACGCGGAATGGCAGAACA TGCCAGAGTGGCCGCATACAAGGTCTGCTGGCTTGGTGGCTGTTTTGGCA GTGACATACTAGCTGGTATGGAGATGGCTGTGTCAGATGGTGTACATGTC CTTTCACTGTCACTAGGTGGTTCAGTTTCTGACTACTTTCGAGACACGGT AGCAGTTGGTGCATTTTCAGCTATGTCACACGGGATCTTTGTATCATGCT CAGCTGGGAACAGCGGGCCAACTCCTGAGAGCTTGTCTAATGTGGCGCCA TGGATAGCTACAATTGGTGCAGGAACTCTGGATCGCGATTTCCCAGCCCA CACTATCCTTGGGAATGGGAAGAACTTTTCAGGCGTATCACTATATAGTG GGAAACCATTATCTACTTCATTAGTTCCACTGGTGTACTCTGCTAAAGCC AGTAACTCGACGAGTGGCATTTTATGTATGACTGACAGTCTAGATCCTGA AAAAGTTGCCGGGAAGATTGTTGTATGTGACCGAGGGGGGAATTCCAGGG TACAAAAGGGCATCGTAGTAAGAGATGCAGGTGGTATAGGGATGATTTTG GCAAATACTGACTCTTTTGGGGAGGAGCTGGTGGCTGATGCTCATCTCAT TCCTTCAGCAGCTGTGGGACAGACGGCTGGTGATGCAATAAAGAAGTACG TGTCTTCGGATCCAAAGCCAGTGGCCACAATCGGATTTTCTGGCACTCAT TTAGGGATCCAACCATCACCAGTTGTGGCAGCATTTAGTTCAAGAGGTCC AAATCCGGTCACACCAGAAATACTAAAACCAGATTTCATAACACCAGGTG TAAATATTATAGCTGGTTGGACTGGTAAAGTTGGACCAAGTGGGTTGAAA TCTGACACCAGGCATGTGGACTTCAATATAATATCGGGCACATCAATGTC ATGCCCACACGCAAGTGGATTAGCAGCACTAGTGAAGTCGGCACATCCTG AATGGAGCCCTGCAGCTATAAAATCAGCGCTTATGACAACAGCCTACAAC GCATACAAAAATGGAGAACCCTTAGAAGATATTGCAACTGGAATGGCATC AACACCGTTTGATTATGGGGCAGGACATGTCGCCCCTACAGCAGCCCTTG ACCCGGGACTTGTCTATGATGCAGATGTTCAGGACTACCTAGAGTTCCTT TGTGCCTTAAACTACAGTTCAAATCTCATCAGGGTTGTCACAAAACAAGC TTTCACATGTGACAGCGGTAAGCAATACAAAGTGGGAGATCTTAATTACC CCTCTTTCGCTGTTCCTTTTGAGACAACCTCAGGAAAAGGGGGTGGCAGC AGTGAACCTGCAGTAATCAAGTACACCAGGACTCTGACTAATGTGGGTAC TCCAGCAACATACAAGGTTTCAGTGTCCTCTGAAACACGTTCCGTGAAGA TAGCAGTTGAACCAGAACTACTAGATTTTAGCAGAACAAATGAAAAGAAG AATTACACAGTGACATTCACAGCAACTTCCATGCCCTCTGGCACAGTCAG CTTTGCACGCATAGAATGGTCAGGTGGTAAATACGTTGTCAGTAGTCCAG TTGCTTTTAGCTGGACATGA
Pep:
>DCAR_008849pep MPKKTYIVHMDKSSMPLSYDDHLQWYDSSIKSVSDSANMIYTYNNVIHGY STRLTTSEAESLEGQPGILLVQEERIYQLHTTRTPEFLGLDESAAVRLEA GAVSEVIVGVLDTGVWPESKSFDDTGLGPVPSNWKGTCEVSKSFAASSCN KKLIGARFFSQGYEAAYGPIDETLESKSPRDDDGHGTHTSTTAAGSAVTG ASLFNYAMGTARGMAEHARVAAYKVCWLGGCFGSDILAGMEMAVSDGVHV LSLSLGGSVSDYFRDTVAVGAFSAMSHGIFVSCSAGNSGPTPESLSNVAP WIATIGAGTLDRDFPAHTILGNGKNFSGVSLYSGKPLSTSLVPLVYSAKA SNSTSGILCMTDSLDPEKVAGKIVVCDRGGNSRVQKGIVVRDAGGIGMIL ANTDSFGEELVADAHLIPSAAVGQTAGDAIKKYVSSDPKPVATIGFSGTH LGIQPSPVVAAFSSRGPNPVTPEILKPDFITPGVNIIAGWTGKVGPSGLK SDTRHVDFNIISGTSMSCPHASGLAALVKSAHPEWSPAAIKSALMTTAYN AYKNGEPLEDIATGMASTPFDYGAGHVAPTAALDPGLVYDADVQDYLEFL CALNYSSNLIRVVTKQAFTCDSGKQYKVGDLNYPSFAVPFETTSGKGGGS SEPAVIKYTRTLTNVGTPATYKVSVSSETRSVKIAVEPELLDFSRTNEKK NYTVTFTATSMPSGTVSFARIEWSGGKYVVSSPVAFSWT*