DCAR_008979 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_008979

Identifier:

DCAR_008979.gene

Locus Tag:

DCAR_008979

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_008979, is a part of gene, DCAR_008979.
The genetic_marker, MK017388 3_3214969, is located in gene, DCAR_008979.
The genetic_marker, MK003114 K0558, is located in gene, DCAR_008979.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_008979	DCAR_008979.mRNA	mRNA	DCARv2_Chr3:3213499..3222778

Sequence:

ATGGCGGCGTTGCGCTTTCAAGCTGCTTCACTAGTGGCTTCACCTTGTTA
TCCGAATGCTGTTGCTTGGTCTGAAGAGAACTTGGTTGCAGTTGCTTGCG
GGCATGTTGTGACTATTTTGGTAATGCTGGACTCACTCGCATTACGATTA
TGAGTTTATAAGGTTATTATGTGGTTGCTTGTTTATGTTTTTTTGGGTTT
CTTTTGATACTCGTCATTTGTTGGTTTTACTTGTATATATTAGACTCCAA
ACATGCCTTTTGGACCTCGAGGCCTTATTACAGTACCACCAAGCCAACCT
TTTCAAATTGGAGTAATAGACAAGGAAGGTATTTGTTCATTATGGCAACG
TACTCATTAGGACAGAATCTCTACCAATGGAATAACCACTGGTATATTAG
GAGAGTTGTTGGGATCTCTTGGTTGATGAGTTATGTTTAAGATCATGTAA
CCTGATTTATTGTTTGGTTTGCCTTGATTAGCTTCTTTTTTTTTTCCGTT
TGCTTAGATTTGCTCAGTGGTTGCATGCAACCCATTAGTTTTCATAGAGA
TACCAGTCCTTGTGTTCGGTCTATCTCCTGGTCTCCCACTGGATTAGCGC
CAAACTCAGGGTAAATTTTATCCAGCTTACCTTGTTTTGGTTTACATTTT
GTTAGGTGTTGTAATGTGATTATATTTGAAAATGTAAGTTGCGTGTGTGT
TACTTGGTGCAGATGCTTGCTTGCTGTTTGTACCACTGAAGGACGAGTGA
AGCTTTACCGTTTTCCTTTCTATGACTTCTCCGCCGAGTGGGTTGAGGTA
TGTCCTCGTTTAGCTCTGAGTGGAAGCGTAGTAGAGTCTTAATATCTTAA
TATCTGTAGTTGACCTTTACCAAAAGTAAATAATCTTGAATGATTTAATT
TGTACTCGAGTCACAAGGACATCGATTTCTTAAAACATTTATAGATAATA
TACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGATAATATAC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCATTA
CACACACACACACACACACACATATGATTGTACCAGTAATCGTCTTGTAA
TGAAGTTTCAGTTTGTCATCATAACATAGATCTTGGATATTTCTGAGAAG
CTGTACAAGTATTTACTGGATGTCAATTTCTGGGAGTCGGATGTTTACTC
GGAGCTTTTTAATGTAAGTCAAGTAATTGAATAGTTCTAGTAGACCTGTT
CTAGCAGTTTAACATAACCTGATAACTTTTCTTTATGTAACATGGACTCT
GTACCTTGTTGTGAAGTAAGTTCACGTGTGCATGTATCAAACATATGATT
TGTAGATAACTAAGCACACTTGAAAAGCACTTGTCAAATGTTTTTTGAAG
TAGAAATGTAAATAGCGCATGAAGCGTTGTATGATTTATTATTTCTTTAC
TGTTTTATTGGTTCTGGTTATCCTTCATCTGTTATATTCTCTGTATCAGA
ACCCCCAAAAATAAAATATCTTTTTCTGTTTTAGGAGAGAGCAAGTGAAC
TCGGGAAAGATCATGATGTTGATACTTCGACCCCTGTGATGAGAAAAAAC
CCTAAACGAAAAAGGCGTAATGACATAGCAGTGAGGTACAGTGCTCGACT
ATGCCATATTTACTAGTATTGCACAGATTGTTTGATTTAATCAAGATAAT
AAACTCTAAACTCATAAGTTTATTCTGTTCTTCTGTGCTTGATGGTAGTG
ATTCTGCAAATGATATTACTGAAGTCTCAAGTTTTCCATGCTCGCTTGCA
ATTGAAGGTTCATCTATAGAGGTTGGTGTCTTTTAGTATATGAAGTTACA
ATGTTGTAACATGATATCATATATAGTCATTGCACTCTTCATTGTTGGGT
TCATGGTAATTATAACACACACACACACACACACACACACACACACACAC
ACATACATACACACATACATACATAGATATAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATATATATATATATATAACACTATTAACT
CAGTTAAACTTCACAGTTAGTAGTCATAGTTGTCTCTAAATCCTTTTGCT
TGTTTTCCAGGCTCTTAAAGCCCCTGATGACAAGCTGAAAAGTAGGTCTC
TTCAAATTGTTTGCATGCCTAAATCTAAAACAAAGAGTAAGAAAAGAGTG
CCAGAAACGCATAACGTCGCCTTAATATCAGCTGATAAATATGCTTCACG
CAGCTCAATGCTAGCTTCAGTTGTTGTTTCCTGGTCACCACTTTTACAAA
CATCCGAGTATAGATTATCGTCACCAGATGATTCGTGTGACTGTTGTTCG
ATACTTGCAATTGGAGGAAAATCGGGCATGATTTCGTTCTGGAAAATCAA
TAAACCACAACACTATTCTATTATAAACAACACATATACCAATGATGTAC
AGCTCGTTGGAATTCTCCATGCACATATGTCTTGGGTCACTACAATGAAT
TGGGCAGTGTCTGTTTCTGATGCTTCTAATCATCAGCTTCTCTTAGCTAC
AGGAAGTTCGGATGGGAGGTGAGTAGTTTGATGCTTACACATAGACTTAA
TTTTTGTACCCCTTTGTATCTAGAGCTTTGACATAATAGTGCCTTGTACA
CCACCTAGTGCTATGAAACACACAAAATTGAAAAAACCGCAAGAGATTCT
TAGCACGGGGTATAAAGGATAGGTGCTCCAATTGTGAAGCGCGATTACTC
ACACGTTTTTTTTCCCAAAATTGAAATAATCTATATTTGTACTTATATGA
TATTGAGAATGTTTGTTCTAATGGTAAACAATAAAATAGTACTTAAAATA
GTTTCAAACATAAATTACAGTCTCAAACATGTGGGAATATTATATAGCAG
TATTAAACTATCAATCTATAATATTTAGTAAGTCAAAGGCTTCTAAATTG
TTTAGCTCAATTTCATTCTTTTAAATTCTTTCTCTTCTTTGTAATGGGTA
CTTAGTAAAGATAAGTAAGTTATTTTTAACTTGGGGGTATTTCAGTTTTT
GTGTTTCTTAGTGCGATTTTTGGCGAGTAATACTCGAGCCAAGCATGATT
TTATGCCAAGTTTATAATCACACTAATACGCAGCTCGTAAAGCGTGATTA
ATCACGCCATTTCTCACGACTTAAACAACACATGTTATCTACTACAGTTG
TCTGTTCAATTGCAACTTGGATGTGATTACACTGAAAATGGACAGAATGA
GGTTTTACTTTATACTTATTGTTATTTATTGTGAGTAGATTTTTAAAATA
TTTTTTGGCATGTATTTGTTCTACCTTAATTATAACTAAATAAAAAGTGG
CTAAACTCTAAAGTAACTGTTATACAAAATGTTGCTAAAAGTAGCTTCAG
TCAACTTATTTTGAATGATAATTCAATAGGTAACAGAAGATACTAAATAT
TCTCTTGCTATTGATCTGATTATTGATATAGATGTATGCATCTAAATCAA
AACAGTAATAACCCATTGCTTTGTCTATAATGCTAGAGAAGTTGCCGAAC
TCCGAAGATCATCTAAAAATTCCAGTTTTAAGGTTACACGTATATGCAAA
TCTTCTTGTGCTCAAACTTATGGTATTTATAGTTGTATGTAAAATTAATG
ACAAGATATCTCATATCTTCAAACTTTCAAGGTATATTAAATTTTATTAG
ACGCTGCAACTTCTACGAATATCAAATAGGCAATACAAGCAACATATACT
TATATTTTGCTTTGTGTTGTTTTGGTTTTTTGTTATTGTATTTGTCTGTT
ACTAGAGGGGGACAACATGCAGTTGATTTGATCACTTGAATATAGAAATA
TTTGATTCAAAAAAGTTTGCTACTAATATTACTCTTTCATTTACAGTGTC
AAGATTTGGCACTGTTATAGTGCGGAATTGCTGAAGCCATCCAAAACTAG
TTCTGCCTCCTTCTCCCTATTTCACGAGGTCACCCTTTTGAACTCTTAGT
TTTTTACTCCAAGCTTTTGAATGAATATATATTTATGTTGATGTGGATCA
GTCTATCTCTATGCAGCTCATATCCGTGGATTCTGTTCCAGTTTCTACAC
TTTCTCTTACTGTGCCCATAGCCTCTGCGGAAAAAATTCTTCTAGCGGTT
GGCAAAGGTTCTGGAGCTTTAGAAGTGTGGAAATGTGACATATCTACCAG
AAAATTTCATAAAGTTGGTTCTGATGATTTACATGGGCATGTTGTAAGTT
TCCTTCTATTCCTATCAAATATGATTATAAGTAAAAATATATGTAAATAT
ATTATCATGATAAATTTTAAGTTTTCTATTTCCAATTACTTTTCAGGTAA
CAGGAATCGCATGGGCATTCGATGGAAACTGTTTGTACAGCTGCAACCAG
GTATTTAGGCTCATTGTGCTCGTATGTGGCTAACGGCCAGCTTATGCAAT
TTGTGATGGTCATGTTTCTCTTATATGTATCCTGTTCACGATTTTCTCTT
CTAACCTTTTTCCTATTCTTGTGTCTTTTCCGTATTTTTGACCCAAAGCA
ATTTTGAGGTTTCTAAGATTCTGTTTTCTTAGGTACATGGTACCCCCCCA
TAATGTTTGCACTTATCAATTCGTGGATTTAGTTATAATGTAGTATGTTT
AATAGTAGAACTGTGTCGGACTTGACTCATTAATGCTTTCCAGTACTGAC
CATATAGCCCCCCCTCCCCCCACCCAGTTTGATGGCCAAGTAACTGGAAT
ATTTTCTTCCTGATGATAAAAGTATGTACTCCTAACTACTAAATGTGTTA
TTTAAGGATGATTCTTTTCACTGCTGGACTCTAAATGGAGATTCCTTATG
CAAAGTAACTTTACCTTCAAATACTCCTGGTGTGGAGAGCTCTACTGATG
TATGATGTGATCCTCTACAGTTCTTAACACTCCAGATACACATATTATTC
AGCATCTAAAGTTTTCCAGGGATCCTTTGCAGGTCCCAAATGCATTCGAT
TCATGTTTTGGTCTAGCATTATCCCCTGGAAATCTGGTAGTTGCTGTGGT
ACGTAATGTTGTCCCTGTTTTGTTTCATGTATTGCTATCAGTAAGCACAT
TAACAGTATATATTTAACATATTAATATACTACATTTAACATATTAATAT
ACTATATTTAACATATTAATATATTTAACATTATTCCCTGGAAATCTGGT
AGTTGCTGTGGTACGTAATGTTATCCCTGCCTAGTATGTATTGCAAACAG
GAAGTCATGCTAGTTATCAAGATTATAATTAGGAACTGATTTTTCTGCTG
CTATGTATGCTTGTATAGTATTTAGTATATATATAAGCCTTGGTACATCC
CTAGTTTTTACACGAATGTGCACATAACATTAACATTTAAGAACATGCAA
GATAGTCCTTAAACTATTTAAACCTTAAGTGTTGCTGTTGAGGTGTGTTC
AATTGTGTATTGCGACACCAATAGGGTTCCAAGTTCCAACTGTTCACAAA
ATTTAACGCAGTGTACAGTCTAAAACTCCTTGAGTAGGGGTTGCATCCGC
CCACATCTTGCATGTCTCAGCAATAAAGCCTCGACTGTCCAGCAGACTAG
CAGAGATGGAATCCAACTATGTATCGTAATTGTGTTATTTATCGTAGGTC
TGTAACTTAAAAGAATAGCAATGGATTTAGGGACAAATTTTCAAGAAAGT
ATATCTTTAATGTGCAAAGTTTGTTTGTTTTTGAGGAACAAGGAGTTACA
GTGTGAAGTTTTTTGCACACGGAGGTGTAAATCATCGACTTAAGTAGAGA
CGCCGCGTCTCTACTGCTTGAACTTTTGCTTTTTGAGGGAAAACAGTAGA
AGTTCTTTGTAAATTTGACTCGCACTATAGGTTGATTATTGCTACCATTA
TCGGTTGGAAATTAACAAGTTTATTGTCGATTACAGGCTCGTCGTTTTGA
TGCAGGTCTATTAGATCCAATGTACCAGTTAAGGTAAAGATTTTCATCTA
TTCAATATAACTCACAAAAAGTTTACATAGTTTCGACTTGCTCGCACATT
TGCTACTATATTCTGTATATCTGCATATACAATATAGAATACATGCATGC
ATTGTCACTTGGTCAAAAATGATACATTAGGACAACTATTTAACGTCATA
TAAATATGTCACACATAAAAGTAGTCCAAGGAGATATAGCTGAAATAGAT
TAGTTGAAGGCGGAAAGGCTTTTCTGGACATGTAGAGCTCAAATTTATAA
TAGTAAAATTGTTGACAGGGCCTCTTTGCAGCTCTCTCTAAAAGATATTT
GTGATCATTGTCAGGTCTCAGAAAGCAGCTGTCGAGTTCTTTTGGACCGG
TGGTCAACAACTTGATAAGTTACTAAAAAAATGTTCAGACTTCGACGGTG
AAGCTTTTTCTGGGTTTTCTACGAGAGAATTGATAAATTGGGATTTTAAC
ATAATGTGCTCCCTCAGTCAACATGAACATTTGAACAAGCCTGTGGTTAT
TTGGGATGTGGTGGCAGCATTGTTGGCATTCAAGCAATTTGCTCCTATAT
ATGTAGATCACATACTAGCCAAGTGGCTAAGGTCTTATGTGGGATCCAAC
TTGGAAAATGCTCCTCTTCAAAAAGTCGTCTCTAAATACCTCTCTAATAT
TACCACCCGTCGGCTGCACTTTTTGAACATCATCATTAGGCGTGTAATAC
TTGCAGATATGAAGGCAGATAAAGTCAATGAAGAAAATCAGAGCTTTGTA
GCTGAACCTGGAAAGGGACAAATGGGTTTGTGGTTGAAGCTTCTAAAGAG
CAGTGAAAAAGAACTCCGGGAAAGGCTCATTTATTGCAGTTTCTCCATCG
TTATTAACTTAGTGTCTCAATCATCAGAAAATGTTAGTAAACTTGGATAC
TGGCAGCCTGCTGGATTGGCACAAATGGAGAACTGGGTTAATTCTCAACA
GGCCCATATCAGGAATTCCCTTAAAGTACTTAAATCGGAATTTAAGAAGA
TTAAAAAGAGGTACTCAAATATTTTAGATATGCTTCTTAACTGTTCCTTT
ACCCTGGTCCCTTGAAGGTATATGTGCAATACCTCGTGGCAAACTTTATT
AATATGCAGTATGTATTCATTTTGGATTCTCTTAATTTGTTGCCAATTGG
TAATAGGGTTTGTTTGTTCAGGGTATTGCATAATCTTATGTGCACTTTCT
ATGAAAAAATAGTATCGGGGGTCATTGAATTCCATCTTGCGAGTCATACA
GCAAGATTATGGGAAGTGTAGACACTAAGTCACTAACATAGCCCTAGTAG
ATTAAATAATGGTGATAGGTCTTTTCTGTGTTGTGCAGACCCTACTTGGT
CTTGTTTGTGCAAGATCATAAATTTAATTTTGTTCTTCTTGTGTAAATTA
GAATGTTTATGGAAGATATCACATTCTTTTTTAACAGCTTAATAATTTGT
GAGAATAATTACAGTGTGACACTGACATTTGTGCACTTGTTTGTGGTAAA
TGGCAACTTGAATTTTCCTCAATTCATGCTCAAGTGGGTTGTGAACTGGG
ATTTGTGCATTTGTTTAAGCGTTTGACTGGGCCTTGCTGCTTATATTAAA
TTATAACAATGATGTAAATGTTTGTGGTTTTGCATGGCTAGTAATATGAA
ATTTTCTTTTGACAGCAAGCTTTGCTCAGTCGGTAAATATACAGCGAAGG
AGCAATGCAGCTACTGTTCAGCACCTGTTCCATTTGAATCTGCAGAAGCT
TCTTTCTGTCAAGGTACAGAATGCGAGAATGGAGTTGTACAGAAACACAA
ACTGACACGCTGTGCTGCCTCTATGATCGTTAATGATATCACTCCAACAT
GGTTTTGTGTGTGCTGTAACAGACGGTCTTCAAAATTTGCACCAAGGGCA
CTATTTTCAATGCTCCAATATCCTAGTGACCTTAGTAAAGACCCAAAAAT
TACAACCCTCCGACCATCATCGACACCCATGTGTGTATTTTGTGGTATAC
TACTACAGAGATTACAACCGGAATTTCTTCTAGCAGCTTCACCTGTATAA
ACTATAAACATGTTAGAACGGTATTTATTTTTGTTGTATATTAATACAAG
TTAATATATATAGTATATGGTAAGTAGGTTCTGAAGTTCCAGAGTTGAGC
ATTCTTTCATTCTTTGCCTTCACCAATGTGTTTGCTGGAAGTCAACTAAT
GTAAGGTCATGGTACCCACAGGTTAGTGTTTTTTTTTTTTTGCTAATATT
TCTGAAAACAACCCACATTGCACAACATATATATCATAAATGTATGTATA
ATATATTTATGGTGTTCTGCAGGCATCCAAGGACAAGGTACAGCCAGAAG
AATTAATACTTGTGGTCACACATTATTCAAGTGTCCCGGAGGAAGATGTA
AACATTAAATCTCAAGATATTCATCTTTTTATCATCTGCTCCCATGTTAG
ATGAATAAAATGAAACTGACTTTTTTTGGTTTGATTGAAATACGTATTGT
TACTGTGTTCGTATATCCGAAGTCTGTACCGTTTGCTTTTAATTCGATAC
ATGCTTAAACAGCTACCACACAAGTTTAATTGTTGTGCTTGGATGGTGCA
CGACACCTTTACTAGAATGTTTGTGTGGAAATGTCAAATACCTGTCACTC
ACTTAAATTATGAAACTTCATCTCTGCTTTATCAGTCGATTGTTATGTTG
ATGTGTACAAATATCAGATTTATATTGTACTGTAATGTCAAAAGAAAGTA
TTATAGAAGATGATATAGGTAAAGATTTTACATATGTGAAGGCTTGCTTT
TTAATTTTGGTGATTTGTGTATATAATGACCTGTAATTTGTACGGTTGTA
AGTTGTAACCGGTGATTTGCAATATTGGCTTGGGACCGATGATTTGATGA
TTTGTACCACCGAAACTCGTGATTTGTATTTTTGACTTTACAGTTTTCGG
TCTGGGTCCTTGCCATATGTATGATGTATCATACTATCAACAGTTTTTTT
TCCTTGCTGGATGACATTAATCTTTAGCGGAAAAATTATCCATTCTAGGA
TTTTTACCATCCATCGATTTTTTTCATGCTGAATTTATGCTGCTTATAAT
GGATTGGCGTGTCATTACCGATATAACAATATAAATATATTGTCTACTTT
GCATTTTCTTGACAAATTGTGAATTGTGTGCAGTATGTGTCCAATGGATT
GGGGACCTATACAGCCATTGCTGCAGGGGATGAAGGTAATGAAAGAATTG
TTGTTACCAAAAAGCTGAACAATTATTGA

Sequence Length:

9279

Sequence Checksum:

8be9c88cca127a45d765d877dd7cbcc9

View location in JBrowse:

DCARv2_Chr3:3213500..3222778-

Cds:

>DCAR_008979cds ATGGCGGCGTTGCGCTTTCAAGCTGCTTCACTAGTGGCTTCACCTTGTTA TCCGAATGCTGTTGCTTGGTCTGAAGAGAACTTGGTTGCAGTTGCTTGCG GGCATGTTGTGACTATTTTGACTCCAAACATGCCTTTTGGACCTCGAGGC CTTATTACAGTACCACCAAGCCAACCTTTTCAAATTGGAGTAATAGACAA GGAAGATTTGCTCAGTGGTTGCATGCAACCCATTAGTTTTCATAGAGATA CCAGTCCTTGTGTTCGGTCTATCTCCTGGTCTCCCACTGGATTAGCGCCA AACTCAGGATGCTTGCTTGCTGTTTGTACCACTGAAGGACGAGTGAAGCT TTACCGTTTTCCTTTCTATGACTTCTCCGCCGAGTGGGTTGAGATCTTGG ATATTTCTGAGAAGCTGTACAAGTATTTACTGGATGTCAATTTCTGGGAG TCGGATGTTTACTCGGAGCTTTTTAATGAGAGAGCAAGTGAACTCGGGAA AGATCATGATGTTGATACTTCGACCCCTGTGATGAGAAAAAACCCTAAAC GAAAAAGGCGTAATGACATAGCAGTGAGTGATTCTGCAAATGATATTACT GAAGTCTCAAGTTTTCCATGCTCGCTTGCAATTGAAGGTTCATCTATAGA GGCTCTTAAAGCCCCTGATGACAAGCTGAAAAGTAGGTCTCTTCAAATTG TTTGCATGCCTAAATCTAAAACAAAGAGTAAGAAAAGAGTGCCAGAAACG CATAACGTCGCCTTAATATCAGCTGATAAATATGCTTCACGCAGCTCAAT GCTAGCTTCAGTTGTTGTTTCCTGGTCACCACTTTTACAAACATCCGAGT ATAGATTATCGTCACCAGATGATTCGTGTGACTGTTGTTCGATACTTGCA ATTGGAGGAAAATCGGGCATGATTTCGTTCTGGAAAATCAATAAACCACA ACACTATTCTATTATAAACAACACATATACCAATGATGTACAGCTCGTTG GAATTCTCCATGCACATATGTCTTGGGTCACTACAATGAATTGGGCAGTG TCTGTTTCTGATGCTTCTAATCATCAGCTTCTCTTAGCTACAGGAAGTTC GGATGGGAGTGTCAAGATTTGGCACTGTTATAGTGCGGAATTGCTGAAGC CATCCAAAACTAGTTCTGCCTCCTTCTCCCTATTTCACGAGCTCATATCC GTGGATTCTGTTCCAGTTTCTACACTTTCTCTTACTGTGCCCATAGCCTC TGCGGAAAAAATTCTTCTAGCGGTTGGCAAAGGTTCTGGAGCTTTAGAAG TGTGGAAATGTGACATATCTACCAGAAAATTTCATAAAGTTGGTTCTGAT GATTTACATGGGCATGTTGTAACAGGAATCGCATGGGCATTCGATGGAAA CTGTTTGTACAGCTGCAACCAGGATGATTCTTTTCACTGCTGGACTCTAA ATGGAGATTCCTTATGCAAAGTAACTTTACCTTCAAATACTCCTGGTGTG GAGAGCTCTACTGATGTCCCAAATGCATTCGATTCATGTTTTGGTCTAGC ATTATCCCCTGGAAATCTGGTAGTTGCTGTGGCTCGTCGTTTTGATGCAG GTCTATTAGATCCAATGTACCAGTTAAGGTCTCAGAAAGCAGCTGTCGAG TTCTTTTGGACCGGTGGTCAACAACTTGATAAGTTACTAAAAAAATGTTC AGACTTCGACGGTGAAGCTTTTTCTGGGTTTTCTACGAGAGAATTGATAA ATTGGGATTTTAACATAATGTGCTCCCTCAGTCAACATGAACATTTGAAC AAGCCTGTGGTTATTTGGGATGTGGTGGCAGCATTGTTGGCATTCAAGCA ATTTGCTCCTATATATGTAGATCACATACTAGCCAAGTGGCTAAGGTCTT ATGTGGGATCCAACTTGGAAAATGCTCCTCTTCAAAAAGTCGTCTCTAAA TACCTCTCTAATATTACCACCCGTCGGCTGCACTTTTTGAACATCATCAT TAGGCGTGTAATACTTGCAGATATGAAGGCAGATAAAGTCAATGAAGAAA ATCAGAGCTTTGTAGCTGAACCTGGAAAGGGACAAATGGGTTTGTGGTTG AAGCTTCTAAAGAGCAGTGAAAAAGAACTCCGGGAAAGGCTCATTTATTG CAGTTTCTCCATCGTTATTAACTTAGTGTCTCAATCATCAGAAAATGTTA GTAAACTTGGATACTGGCAGCCTGCTGGATTGGCACAAATGGAGAACTGG GTTAATTCTCAACAGGCCCATATCAGGAATTCCCTTAAAGTACTTAAATC GGAATTTAAGAAGATTAAAAAGAGCAAGCTTTGCTCAGTCGGTAAATATA CAGCGAAGGAGCAATGCAGCTACTGTTCAGCACCTGTTCCATTTGAATCT GCAGAAGCTTCTTTCTGTCAAGGTACAGAATGCGAGAATGGAGTTGTACA GAAACACAAACTGACACGCTGTGCTGCCTCTATGATCGTTAATGATATCA CTCCAACATGGTTTTGTGTGTGCTGTAACAGACGGTCTTCAAAATTTGCA CCAAGGGCACTATTTTCAATGCTCCAATATCCTAGTGACCTTAGTAAAGA CCCAAAAATTACAACCCTCCGACCATCATCGACACCCATGTGTGTATTTT GTGGTATACTACTACAGAGATTACAACCGGAATTTCTTCTAGCAGCTTCA CCTGCATCCAAGGACAAGGTACAGCCAGAAGAATTAATACTTGTGGTCAC ACATTATTCAAGTGTCCCGGAGGAAGATTATGTGTCCAATGGATTGGGGA CCTATACAGCCATTGCTGCAGGGGATGAAGGTAATGAAAGAATTGTTGTT ACCAAAAAGCTGAACAATTATTGA

Pep:

>DCAR_008979pep MAALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRG LITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAP NSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWE SDVYSELFNERASELGKDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDIT EVSSFPCSLAIEGSSIEALKAPDDKLKSRSLQIVCMPKSKTKSKKRVPET HNVALISADKYASRSSMLASVVVSWSPLLQTSEYRLSSPDDSCDCCSILA IGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAV SVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELIS VDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSD DLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGV ESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVE FFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLN KPVVIWDVVAALLAFKQFAPIYVDHILAKWLRSYVGSNLENAPLQKVVSK YLSNITTRRLHFLNIIIRRVILADMKADKVNEENQSFVAEPGKGQMGLWL KLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENW VNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFES AEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFA PRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAAS PASKDKVQPEELILVVTHYSSVPEEDYVSNGLGTYTAIAAGDEGNERIVV TKKLNNY*