| NCBI Gene |  |
|---|
| Relationships |
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| The mRNA, XM_017375258.1, is a part of gene, LOC108205336. |
| The genetic_marker, MK001013 GSSR-014, is located in gene, LOC108205336. |
| The mRNA, XM_017375259.1, is a part of gene, LOC108205336. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017375258.1 | XM_017375258.1 | mRNA | DCARv2_Chr1:14358972..14368912 |
| XM_017375259.1 | XM_017375259.1 | mRNA | DCARv2_Chr1:14358972..14368912 |
GCTTTGAGATGGACAGCCCAGTTCTTCTTAATTGCAGCAGAGTTAGCTAA
TTGATTCTGTGTGTAACTGTGTGCACAGGCTCCAGCACTCTGCAACTGTT
TATCCTCTTCCTCACCCACAACCCAAGTGTATCAAAACTACCATATTGGT
AATCTCTCTCTCTCTCTCTCTCTCTGTGTCCAGACAAGTGTTTGCTTTGT
CCAAGGTGGTACAAATACTATAATGTTTTCTTGAATATGAAACACATGTA
CAGTCACTAGGCTTCTTGGAGTTGGGAGGTGATGGGTCCCCTTACATTAT
CTGTTGATATGAAAAGCTCTTCTTCAGGTTAACTATACTCTCAATGTTTC
ATTCAAGCACTGGTTTGACATTTTTTTATGGTTTAATTGTTAATTAGAAT
TGTAACTCTTGGTAAAGATTGTTGCTTTTTAGTTAGTGAATTATAGTAAA
AGCTGTAATTATGTGATTGAATATTATTGGTTTTATATTCCAACATTCAT
CTGAATTGCATTGCTGTTGTTAACTTGTGTTGATTTCTAAAGCTTGATTA
CTTTTCGGGAAAAACCAAAGCCATACGTGTATTTTGTGATATATTCTTGA
GGATATGAATGCTTTATAGAATATGTTTAGCTTGATCAGATTAATGTGCT
TGATGTATAAATTTTTTTATTTAATATAGTAATTTATTATATCAAGTGGA
AGCCAACTAGCTTAGTAGAGTATGTGTTTGTGGAATTGTCTCGGTGTTTA
ACTGATAAAGGAAATAAAGATTTGTATGAAACCTCCTTCATGTACAAGCT
TATTTTGTGATGCTTTAGTTTTTATGTTACTGGTTCTTGTTAGAGCAGGT
GATATGGTTTTGCAGATGCATCCAGTAGGAAATTGCAGAGCCTGCAGTTG
CAAAAGAAGAACTTTTTTGCATCAGTGAGCACAGGAGAGGAAAAGCCATT
TGATTTTCTTCGAACTCTATTTGGTATGCTTGTAAGAGTATTCCAAAATT
TTATTCATTTGAATTGATCAAGTCTAGTTTTTGACTCAGGGTCCAGGCTT
ACTGCAAAGGCCGTCACACATATCAAACTTCCCACCTAGTTGTAGATCTA
AGTATTTAACATCCGAATTTGTATTTGGATTTGAATATTTATAAGTAAAT
TTCTAGATTTCTCAAAGCAGAAACCTTTTCGTTGTCAAAATTTAACATGA
ATATGATAACATTTTACTGTTTGTTAATACCTTGTGGCATTTTTCAGAGG
GTTTCATAGCAGGAGGCACAGCTGGAGTAGTTGTTGAGACAGCTCTATAT
CCGATTGATACAATAAAGACGCGATTACAGGCAAGTGAACTGTTTTTAAA
TATGACGATGCATATTCTTGTTATGTTTCTTTTTTCTTTATTCAACTAAA
TGTTCCCTTCAAGAAGAACATTTAGTTGGATAATAAGAGTATAGACGGTC
AACTGATTTTATCATAGGTCATGGGGCGACGGTAATGGTTTGCTGTACCT
TGCACTAATTAAGTTCTACAAAAAACCGAAAGCATGCTTGTGGTTCTCCA
ATTAAATATGCTGTACCAACTGCTCGGAACATTTACCTTCATGTATTTGT
GTGACAATGTCCTTTATTTTGTCTACACATAACCTTCACATAGACCTTTT
TTCTACTATTATAATAAGAACAGTCATACCATGTTTTCCTTTCTTCAAAT
TCCGGAACTTCCCATTAAAATCTGAGAGGAACTAGGAAGCATCTTATTGT
TTGTTAGTTAAAATTCATGTGGCAAGTAATTTAGTATTTGTAAGAAAGAT
AATGAGTGATAAAACTAGTTTAGCTCTTCAAAAAAGCATTTTTTTTTAAA
ACAAGCCAAGTCCTTCCTCAAATATTTGATTTTGTCTTTGTAAGAAAGAT
AAAGAGTGATGAAACTAGCTTAGCTCTTCAAAAGAGCATTTTTTTTTAAA
AAGAAGCCAAGTCCTTCCTCGAAGATTTGATTTACTATTTGTAAGAAAGA
TAAAGAGTGGTGAAACTAGCTGAGCTCTTCAAAAGAGCACTTTTTTAGAT
GAAGCTATGACGCAGCACAATGACAAGAATAAGGTTATAATAACAAGATT
ATGATAAGAACAATAAGAACAGTGATTAATACCCTTGGGAGATTGAACCG
CAGAACAATCTCTACCCCAAGCTATCCCCAAATTGAGACATTATCAATAT
TCAGAGAAAAGTTTTATATATATAATCAAAGTCTGCCTCCATAAGGAGCT
AATACATGCATATAAATAGGCTGTTCACAGACCAACACAGCCAGGTAAAA
TTAGTAGTTCAACTCCCACCTAACTAGCAATAATATCTAGCTGCAACTAC
TAACAGCTAGATTGTACACACAGTCAACATACATAGTCACTACCATCATA
AGTAGGATACACACTAAACCTGTTTTAAGTTGAAACTAATTTTACATATA
ACTAAATTAGCTACTAGTAAATAAAATATATCCCTTTTGTTATTATTCCC
CATCATTCTCCCCTTGTTAGAAAAAACTCGACCACGAGTTTTGTAGAAGG
CAAGAGTCATGTAAGATTGCGACGGAACCAAAAAGACCTTTATGCACTTC
TTCAAAAGTATCAACTCTGTTCTCAAATAACGTTGGAAACTGATCTGCCT
GTGAAGGATATTTAAACAAATTTCTGGAATGATGAACTCGATGTGTTCAA
CCTCAATAATATCATCATCGGCCATTTTTTCCTCTTGAACAACTGGAACA
CTTTCTGCAAAAGATTCCACAAAAATGTCTGTTTTGTGCTCTTTGCAATC
CAAAGAATCTGAAACAAGCACATTATCCTCGCGCAACTGATTTTCTGTAT
TTTTATCTTCAACATGATTGATTTCCAGTGCAATTTCATCTCCTTTGACT
ATTTCTTCCTTCTCCAAATTGGATTTGTGATTCCCGCTAAGAAGTTGAGG
TATAAACATTTCATAAAACCTCTGTTGTCTCTTCTCACTCTTTTCCTCTT
CTTCTTTTCTCAATTGAACTTTGTACTTTTGTTTCAAGTTTTCAAGTTCA
TAATATGATTTATCTAACTCCTTCAATGTAAGCTCATATTCAAATAGCTT
GTTTCGATGATAACAGGCATAAATCTCATAGTGTAAGGAATCACATTCAT
CCTGAAGACAGTGTATATTATCCTTTACTATCTCAATTCCAGACTTTATA
CGCTTGGACATGATTTAATAGACAGAATTGGGGCTGATTTTCTCAAATTC
AGAAGTTTAAGGGTCTGAACAGTCAGTAGATCAGAGGTTACAAAGGCTGC
ACATATTTGTTTTAAACGCAGCAGCAGTTTAGAAAAGCAGCCGCTTTCAA
TAAGTTTCTTTTTCTCCTTTTTTCTTTCTTGTCAATTTTCCTCCCTGTTG
CTTCTCTCTATGATCTTTCTTGATCTCTTTTCCCAGACCTGTTATCTTTT
CTGCTTTGGTGAGTAATTGTGGGTGTGATGCTTGTTTCAATTAGTAAGTG
TATGGATTGCGTTGTGAGAACTGAAACCGAGTGTTTAAAGGTTTAAAAAA
AAAAAGAGTGGTGCAGCTTTGTAGGTTACTGGGCAGCAAATGGAAGTGGT
TGAATCTGGTGGTGCCATGGTAGTGATATGATGGTGTTATATTCCTGATT
GTTTGGTAAAGAGGAATGGTATTCAAGGACTGAAATTAGGTTTCTGGATT
ATATGTAGAATTGGTCAGGTTTGGACAGAAATCAGGGTGAATACAGCAGC
TGATGAACAGTAACAGTAGGATGAACTTTAACAATGATAACAACCAGAAT
TTTAGCTCTGACGCCAATTTGACGCAGCACAATGACAAGAATAAGATTAT
AATAACAAGATAATGATAAGCGCAACAAGAACAGTATAAAGAATAAGATA
ACAATAACAAGATAATGATAAACACAACAAGAACAGTGATTATAAACCTC
GGGAGATTGAACCGCAGGACAATCTCTACCCCAAGCTATCCCCAAATTGA
TACATTATCAATATTCAGAGAAGAAGTTATATATATAATCAAAGTCCGCC
TCCATAAGGAGCTAATACATGCATATAAATAGGCTGTTCACAGACCAACA
CAGCCAGGTAAAATTAGTAGTTCAACTCCCACCTAACTAGCAATAATATC
TAGCTGCAACTACTAACAGCTAGATTGTACACACAGTCAACATACATAGT
CACTACCATCATAAGTAGGATACACACTAAACCTGTTTTAAGTTGAAACT
AATTTTACATATAACTAAATTAGCTACTAGTAAATAAAATATATCCCTTT
TGTTATTATTCCCCATCAAGCTAAGTACCTTCCTCAAAAATTTGTATGTA
CATATAAACGTCTCAATGTTCAAAAAAGTTATAATTGTGAAATTGGATGT
TTGACAGATTAAAAGCTTATGCATCTGTAATGCTCTTATTAGGCAGTCCG
TGGTGGAGGTCAGATAATCCTCAAGGGGCTATATTCTGGGCTAGCTGGAA
ATCTTGCTGGCGTCCTACCGTAAGTGCAGTTAACTTCATCAGCATTTGTT
GCTAATCCATCTTCCAATTCATTTAAGCTGTCTTTTCCTTGAGCTAAATT
ATATGGTCCTTAGTTCAGTTGTTTGCTCATCTGATGATACGTTTATTCAC
ATCTGTGGGTTGACTATGTTTGCAAATACTGCAATATAAATGCATCTTGG
ACCCTACATGTCAAAATACAGCAGATTTCAATGTCAATCAGATAATCTGA
GCATATTACATCTATCTAGTGATGCTAAAATTCTGTGCATGTTTGTAATT
TATTCGGAAACATAACCAATTATTAATTTCATTGGCTGCCCATTGTTTAC
AAAAGTGGGATCTCACGAGTTTATATATTTTTTTACGGGTTTATCTACTT
TTTGTCGCAAGACATCAGTTTTAAGATTACACTTGTTGTTAAGCCAGTAC
ACTCAAGGATGCTATCTGTTTGTATATTTAGTAAGTTAATATGATCCTTT
TGTTATGCTTACTGTTGTTGCTGAACTTCAAACAAGGCAACTGATACTGT
CAGATGGCTATAAACTGGACAGGGTCTAACACAAAGTTATAAATGAATCT
TCTGTTTCTAATGAACTACATGTTGATCCCAGCTTTTTCACTCGGCATTT
TCCAAAGGATATAATGTGATACGAAGGGTCACAATTTTTTTTAAGGAATG
ACACATGAAATAAATCAAATAATTACAATAATCAGCATTCAGCAAGTACA
GGGTTCATAAATACAATGTGTAGGTGCCAGTGTATATAATACTCATCTGA
AACAAAATATCTGAGAATTAAGGCTCCTAGCTTTATTCTAAAGTCCTATC
CTGGACTTCATTGACAAACTAATAAATAAATTCTTTTTACATTTTTATAA
GTTTAGTGTTGTGTTTTTAGTGATACAAGTAAACCTCTCCATAAAACAGT
ACCCACTTATAAGTTAGAAAAAAATACGTTGTTTAAGTATTGAATAAAAG
CTGGTCTTAGACTTCTAAAATCGCATGATCAGCTTTTCCTCACTTCAATT
TAATTTCTAGTAAAAAATTTGCAAGGAAAAAAGGGTATGGACAATTACCT
TTTTTTTTTACTGGAGTAGATGATTTTATGAAAATATTTCTTTATGCAGG
GCTTCTGCATTGTTCATTGGTGTCTATGAACCTGCAAAGAAGAAGCTGTT
GGAGATGTTTCCTGAAGATCTTAGCGCTCTTGCTCATCTGGTATGCGTTT
CTTTACGTACATTCATCTGGTATGCGTCTTTACGTACATTTTTAATAGTC
ATATTATGCAACAACTTTGTCAAAACAATTATAAAAATTTTGGTTTGTTT
CTTTAAAAACACATTTGGTAAATTTGCTTCCTTTTTATGAACAATAATCA
GAAGAAAATTATCTACTGTTCTGCAATATTAGTATCCGTGGAGGCTGGAG
CCAATCAATAGCTGCAATTGAGCAGTCTATTACTCTACACTGTAGAAGCA
TTTTGTTTTGTGATTCCAACTATAGCCTGGAATCTGTTACTTAGTAGGAA
GACTTTGACAGATAGATAAACTTTGTTTTACTTTCTTCTTATGAACGTAT
AGCATGGGAAATTATAATACAAGGGTATGAAAGAATTTATTCCTTCAAAA
GGATTTTCATTACCATTTCATGTTCCTAGAACTTCCAGAAAACCTCGGAG
GCACACGGAAATATATGTGTTTTTTTAGTGTGATACTTAGGCATGAGGAT
ATGTACATTGTTACAACCATGCTGTTGCGGTTCCTTGCTTTTTGTTAAGT
ATAAAAGTGGGGTTCTAACTATATGAACTGGCGTATCACTAATGTCTTAG
TGAATCACAAGCCATTTCTTAATACTTCGAAAGGTGTTGAAAATCATGTA
GAGCGCAGGTGCTTGTGGTGGGCTTGCTGCTTCTCTCATCCGTGTTCCCA
CTGAGGTAGATAACAATATTTAATTTTGATGTAATTGTGCAGGTTCTGCA
CCACTATTATATTTTGTTTTAAGATTTCTAAGATATGCTTCATATTTCCA
GGTTGTTAAGCAAAGGATGCAGACCGGGCAATTTGCTTCAGCCCCTAATG
CTGTACGCATTATTCTTTCCAGTGAGGGTTTCAAAGGGTTATATGCGGTA
TACATTCAGTTCTTTTTGTTGTTTATTTTGAGGCAGCAGTTGTATACTAT
ACTATTTTTCCATCCCGTCCCTTCTCTACTAAAAGACCAACTGTACTGCA
TTCCTTCAAAATTTTATTTTTATTGTAGTTATTTAGTATATCTCTAATCA
GATGTTGTTACTAATAAGCAACTTAAGGTTGATGAAGATAGACATAGTTG
CATAATTATAATTGACTGACGAGCTTTCACCTTTATTGATTGTGCAGGGC
TATGGATCTTTTTTGCTGCGTGATTTGCCATTCGATGCAATGCAATTTTG
CATCTATGAGCAACTTCGAATGGGGTATAAACTGGCGGTAATATCTCTTT
TTCATATCTTCACTCCTCTCTTCCAAGGTATATCTTTGTGCGAGGGAAGC
TAACTGGTTCATTAAAATAAACAAGTGCACAATCTCTTGAGTGTTAATGG
AAAAACAGATTTATATGGTCCATGCCTTGGTGGTTTCACTTCTCATATTT
GTCAATACAAATCTGGCACAGTACATAGTCAACAAAAACTTGATATATAG
CTTTCTCTTATTGTGTTAAGTAATAAGCAATAATTTGTATAACATTTAGT
ATTAATATTTTCATGGTCCTTGCATCTTGTAATTACAAATAATAATGTAT
TCTCTGTGTATGGTAAATGAGATTGGCGCATTAAGCAGCCTGTAACTGTT
TCAAATCCAAAAAGTACCTGTTGGAATTCTGACCTATCTAGTCTCCTTAG
TCTTTAGTATTGACAGGAAAACTTTACATTACTGAATGGTAAGATTATCT
ATATGCACCTCTTAAATTATTCTCTATTTTTTTTATTCAGATATATTTGT
CATTGCTTCCAACAATTAGAGTGCAGTCTGCTTCTAGTATTATTATGCTA
TAGTTTGATTTTTGAGCAAGTGAAAGCAACCAATTAGACTACTCACCAGC
TTGAAATTTTTAGGACTTGTCAGATCAGGAATATTAATTAATTTATAAAT
GTCTGGCCTTATAACATTGTAGCACACTTGCATTTCTATAGTTTGATCGC
ATGTGTATTATTACAATCTTCTTTGCACCACTTTCAGGCGAAGAGAGAAC
TAAATGATCCTGAAAATGCTATAATTGGTGCTTTTGCTGGTAATTTTTTT
ATATTTATGAACATAGTCTTTCAGTTCCTATAGGTTAATTGTTTCGTTTT
CTTGTTCAATGATATCTTGCTTAATATCAAGCTCTCTGCATACCCTATAT
TTCTGCTTATACGTAGTAAGCTACCTAGATGTCAAATAAAGTCTGGAAGA
TGTATAGCGGGCTCGTGTCACTAACATGAAGGCAACATCAATTGTGGCAA
CTAAGTGATAATTGCTGATTTACTCGTTGTCGGCAGAGCTCCGCCCTTCC
AAACTTTCATAAATTCATTAAAAAGTGTAGTCAGCATGTCAACATAGAGA
ATCTTTTACCACCGAAAACAAAAATGTTTTATTTGCACATCCAACAATTG
GTGGATCCCCACATGGCATCAATTGGAAGCCAGCAAAGAGTACACATCCT
CTTCCTCTTCCTAGCCTCTGAGAAGTCTTATGATTTCCCCCCCTTGTCAA
TAACTATAGTCTCTTTTACATTACCTTTGTTAATGAACTTTTAAGGTGCT
GGCCATTAATCTTCGACTATTGGAGTCTAAAGATCTAGAGTCGTAAAATT
CCATTGGATTTCTGCAGGCTCAAAGTGTGTGACAAGAATATGGAAGAATG
TTGGAAGATTCATTGTGCATAGTACCGAGTTTTCCCAATATGAAATGCTA
ATTGAATTTATGGAGTGTTGTTTATGTTTTAAACATCATGCAAACCTGCA
AAGCATTAAATAAAGCACGGTACAGATTATATCTGTACATCTGATAGTTG
TTATTGCATGACTTTCAAAATTTAATCAGCACAAATGAAATTCTTTCTCT
TTTTTCTTTCTTGAAATTATTTAAATCTTCTTGATTAACTTGTCAGTTTA
TCAACATTAACTTGCATAAATTTTATTAAGGTAATTGAGACCATGGACAA
CTGAAAAACCCTTTATTTATAGTTTATATAACATCCAAGTATTGGGCTAA
TGGCAAAACTCTGTTGAGCTAAATTGTTTAACTTTATTTTACTTGGTTTT
CATCAGCACCTTTTGGTTAACAGTGAAGGTCTCACATAACATTAAACGGA
AACTCCCAAATGAGTTCACACATGCAATCGATTACTTATGGTATGTGTAT
GAAATGGTCTATTGCAGGTGCAGTTACTGGAGCTATAACTACACCACTTG
ATGTGATAAAAACAAGGTTAATGATACAGGTATGTCCTATAGATTATAGT
AACCCTTTCATCTCTTTTAAATTCTGCTGCATGGCGTTCAAAAGCATCTG
GCTAGGATGCATTTTATTAGTTTTTCCCATTATGCTGGTAAGATATAGCA
TTTTCTCTGCTATTTTTGCAGGGATCAGGAAACCAGTACAAAGGAATAGT
TGATTGCGTTCAAACTATAATCAGAGAGGAAGGTCCTCCTGCCCTCATAA
AGGTTCGCTTATAGCTTTACCAAATTTTGTTAATATACATACTAAGCTAG
TCCCCTTCACTTTACCACAATCAAGTGGATTTAATTGTAATATATATATA
TGCTGTGAAAGAAAGAAGATAGAGTACAGTAATAGATTTGATGAAGCTTC
TATAATAATTAAGGTATAAGAGGAACTTAAATACTAAGGTATTACGAGAT
ATGCAGAGTTCTTCTCACCTTATATCCGAGTAAAGTGAAATTTGTATAGC
ATAAATTTGTTGCAACATTGAAGTACTAGCAATCAGTAAAGACAGTCCTA
GCGGGAGAGAATCCCGAAATAGAGAAACACACAAGTTTCATAATTATTCT
GTGGTTTCAGGGCATTGGGCCAAGAGTGCTGTGGATAGGTATTGGGGGAT
CAATATTCTTTGGTGTTCTAGAGAGTACAAAGAGGTTGCTGGCAGAGAGG
CACTCGACACATCAAAACTTAGACTCAAAGAAAGATTAGGTGGAGAGCTT
CATTCTGCATACAAATTAGGTTTCTTGTACAATATTAAATTTTGTAGCAT
TATAATTCCTGGATATCATTTTTGTATAGGAGATGGGAGTTTCAACAATG
GAAAGAAAAAACTTCAGATACCCCTGGAAAGTTTGTTTAGTCACTGTAGT
GTATAATGGGCATGGTTTTCCCCTCCATTTTTTGAATAAGTACTTGTGTT
TAACATTCGGTGCTTTGGCAACCAATTTTTTTTGATAAAA