Resource Type:
Gene
Organism:
Name:
DCAR_009627
Identifier:
DCAR_009627.gene
Locus Tag:
DCAR_009627
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_009627, is a part of gene, DCAR_009627. |
| The genetic_marker, MK004582 K2026, is adjacent to gene, DCAR_009627. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_009627 | DCAR_009627.mRNA | mRNA | DCARv2_Chr3:9450100..9463309 |
Sequence:
ATGGAGAATGGAGCGAGTGATTTGGCTTATAAGTTTGCGGGATTGGGGAT
TAACAACAACGAGACTAGTAGTGATGCCGCCTTGTTCCAGGTTATGAAAG
CAGTTGAAGCTGCTGAGGCTACAATTAAACAACAGGTACAGTTTTTTTTC
GGCTTTTTGTCGAATTGTTTGCTTTGTAGCTACTTGCCTACTTGTTTTCG
AGTTTTCGTATGTTGTTCTTAATATTTGGAACTCTACTTGTTTTGTGATT
TTGGCATGTGCTTGTTGAAATTTGGAAATAATTGAATTGTTTGATTGATG
CTCAGAGAGTAGGAATTACGTGCACTATTGCATCTAGCTATCTATTGGGA
ATTTATTCAGAATTTTAAGTTTTGCAACGAGTGTGGTTGTAGATATGCGA
GAACAAATTATATGGAAATTATCTAATAGACGAGAGAGAAAAGTGCCGGT
TTGGGCTGGGAAAATGTTGTTGTATAGATTGCAACCTGTTAAAAAGGGTG
AATGTTATACTAATAAACTCTATATTCTATTAGAATGCGAGGTTTATAAT
ACTTATTTTAGTATCTAATTTGTCCTCTTTACTATTCTCTTTTTACTATA
TATATTTTAATAAATATTAAAAAATAAATTATATTTAAATGTAAAATATA
GTAGGTTATAATAATATTTTATGCTCCTATCTTTAGAAGAAATAATATAA
ATATTTAGTTCTAATATGTTGTTGACATATTCAAATCTTTTTTTTTTGTC
AAGGACGGATTAAAACCTTAAACCTTTAGTTGTATACTCCCTCCATCCCC
CTGAGTTATATACATTGGGAGACGGGGACGCGGCACGGACTATAATGCTC
CTGTAAAGTATAGTTCTATAACTTATTTTTAAGATTTTTCTTCTCTGAAT
AAAAGTTTGAATGTTATATTTTTATTCACAAAAAGAAAATTTTAAAAATA
AGTTATAGAACTATATTTTATAAGAGCATTGAAGTGCGTGTCGAGCAGTG
AAAAAGAAATGTATAGAATTAAATGGGACAGAGGGAGTACTAGATATCGA
TATGTAGACTATTTCTTAGTATCTTATCTAACGGCTGAAGGTTATTGCTG
ACGATGCCAAACTGCTGACCAACCAAAAATTTAATGTTTAATAATACAGT
ATATATATTATTCAATATTCATCAATATATGATGTTATAATATATTACTG
ATACAAGATGATTTAATTTCTGTATTTAGGGATAAAACTTGACCTTAAAT
TATAAGAGAATAATTCTAATAATTACCTATATTCTTTTTAGATAATAATT
GTCATATGCCTAATTTTTTTATTAATAGCATGTCTGAATTCTAGAACATA
TTCTTCAAGAATAATATGAATTTTCTATTACAAATAAACTCATATCTAAG
TGATATAAAATTTCTAACTGATTCAATCCTAACAAACAAACTCAACCTCG
AGGAAGAATATAAGTCCCCTACAGAACTTTGTATGAAAGATTAAAAGAAT
ATGCACGAGACTGGGATGGGACCACAAACAATTGAGACAATTTGACTAAA
GCCGGTGGTTGATATTGTTAAATGTTAATAACTTGTCCCATTGACATGTA
CAGTAAAGACTTAGAAGTTAAAACAACTGAGGTCAAAAAGAATTTACCCC
ATTGACATCTACTAAGTAGAGACTTAGAACAACTGAGATCAAACCTTTTT
AGTCTTCACATATCACAAGAACTATAAGATCAATTTAAGAAGAAACAAGT
TCTTCGTCATTTAACTTTGATTGATAAATCCAATTTAGGGACACCGAACT
TCCTAGCACATTTCCGCTTTAAGAGTATTCTTAGTTTCAGAGCCTGCTAA
AATTTAAAAAAAAAATTAGTTGTGATATCAAGTAATTTAAAGCAGAATTT
GAACTTAAACTTGAAGCTATTGTCTGCTTGGATACTTTTATTTAAATTGT
GTTACTTATGAATTATCAAAAATAGACAAAAAAAATATAATTAGTACATC
TGAATGTTGATATTAACTTTTATCGAAAATAAGTAACAAAAATGAGATAA
CTAAATTATCTTTATCAAGATTATTTTATGATCCAAGCCGTCACCATCAA
GTAAGTGCCTTTTAGGTGATTTTAGTCCCAAAAAAATGTGCTTCCCTTTG
TTTGTGACATTTGAGGATCCTGTGCCACTTAATTTTTTCTTAACCGTTTC
TGTTTTCTTCCCTTGCTCCCTCTCATAATTCTTGTAACATGATTCTTGTA
ACAACTACCTTTTACACCTATTTTAAATAGTATAGAAAAGATATTTGCAC
GTAAGATTTTCGAATTCTCTAATCTGGATTAAGTACATTAAACTCTAATA
CCAAATTGAAATTGTAAGAAAAGATATGCAACTATTTTCTTAAATTTATT
TAAATGTGTGTGGAAGTCAAAGTGACAAACTTATGAGCTGGAGAATTCAT
CTTGCATATATGCCTCAGAATTCATCTTGCATATATATGCCTGCTATATA
TATTTTGGGTCTTACAACTGCTTAATCTTATTTTTGATGACTATTCCTGT
AACCTTTCAGATTTTCTTTTTCATAATCTGCCAGTTTTCCATTAAGCGAG
CTTACGGCTCATTATCATTCTTAAGGGCTTGATGCGCTTGCTTAAGCGCA
GCAATGCTCAACCTACACAATGCGGAGAAGCCTTATATTGCTTCTTAATT
ATGCGCGATTCTAATAACTACGCCACAATTAAATACTAGAATATCCTTAT
ATGATAATAGCAGATTTCTCTTTTTCTGAATAATATTGAATTATAACAGA
TAACTTAGTTATTCATTGCTCCGCTTCCAGAGAGTATATTCTACTTTGCT
GGTTACAATTATAATTAGTGAATGATCTTCTACTTGGTTCAAATTACAAC
CTTCAAGGGAAAAAATCTTAACCGGCTTGTAAGTGGAAGGAAAGTATAGT
AGGCATCTCATATAATAGTGTGGGCTAGATCCTTCTATATTATCTCAGTA
TCACTTGTGTTGGCACTTTACAGTTAAGATTAGACCAATGCAAACAAATC
TGTTAACCTTGGAGTCGACAGTATTTCCGTGGAAGCCTATTAGTGTCCGT
GCCTAACTGTTGAAATAACAAATATTTCTGAAATATTATTGTTATTTGTC
TGATTCTTGTTGTTCGTTTATCCTGATCTTACTTAATAAGTTTAGGTGAT
ACTTACCATTAAGATTTTGATTTCAAGTTAGACTTGTATTTAGGCTAATA
AATTAAACATGTTATCGTGTTGTGGAGTTGCAGATATGCAATTAGGTTTT
TCATTACGGATCAAATTTCTTGCAATTGTGAGTAGAGAATCCAACTACAA
ATCACAATATCTGGTTGCCTCACCGTCGCCCAAACTATGGAATAAAGAGA
GAGAATAGCATCGTAGATCAATGTATTCCTTTTTTATTAATTTTCTGCTT
TAGTTTGCTTAATGTATATTTTTCTGTATTTCCACAGGTGGAAGAGAACA
ATCGCTTGAGGTCTGAACTACTAAGAAAGCACCATGAAATTGAAAAATAT
GTATGTGTGATATAATGATCTTTTCGTGGGAGATAGCTACTCTCATTATT
ATCCCTTCTGTTTTCTTTTTGTATTGTTTGCATTTTTCCTTTCTATTCAT
TGGATGTAGTAGAAATAGATGTCTTTTACTTGTGAAATGCCATAAGAAAG
TATGTCTAGTGTCTAAAGATTCATTGTACTCAACATGGTTCATAGGTTCT
TTTATATACGCAAGTTTGTAAAATGGCGGCCAATAAATGGACATGTGGAC
CAGTCAAGGTAGAGGTCTTGTGGTTAATATGTGGGATTGTGTGTCAAAAC
TACAACCAATACAATTTATTTATTTTTTTTGATTTTTTTAAAATAAATTA
CGAATGATTGCCTCTACATCGGGCAAAATTGGTTAATATTAGCGATATTG
AAGGTTAAAGATCTAATACTCTTATGTTAAATGTTGTTACCCCGAGTCTC
TATTTTGCCTCGAATACATATCGAGCACTTTACACTCAAATATGGGTATA
GACACTCGGACACTTGTTTTAGGCCAAAAACATGTAAAATTGTTGCATAA
AATTGTAAGTCGAACACTTGTACGCGGATCCTTGTTCAACACTCATACCC
AAGTCCTGGTAAAAGTGAAAAACAAATTAAATGTAAGGTTTGAGTATAGT
TTCATTGGTCATGGTGCTGGAAGATGGGCGAGAGTTATTAGATGTGTACA
ATTAAATGATGGAGGTTGTACTCTAATCTAAAATTATGTCTAGAGGGCTC
CTAGATAAAGCTACTGTTCAATATATTTCTTTTTTTAACTTGCTCTGCCA
GTTCATTCCTGCCACTGCTGGAACTAGTCGTAATTGGTCGCTTAAATATA
TATTGATTACAGGGTCAGCATGGTGATTAGCTTCAGCTCTAAAATGTGTT
TGCTAATTTGATAGCAGTAACTAATTGTGTAACAATATTAATGTGAACTG
CAGCCAAATCCTATAATTTATTATTGCAGCTTATTTTGCTTGTGTATCTC
ATAGCTGCAGAATGTGTCATATTTTATTTGTACACAATATACAGTAATAA
ATAACCTTTAATTTTCTCTGTTTTTCTTTTATATTTTCACATGGTGCAGA
AAGTGGCTGATTGGACACCTCAAAACCCTCTTTTAGTTGATAACTGGGAT
GGCCATGCCCATGGATATCCAGGAATTGATCGATCAAATTATCGTCTCGC
GAATCCAACAGGTGTAGCCAGTAGCCTGAATAGCTCGTCTGCACATGGTC
CATCTGGTACATCAGGCCTAAGGAAAGAAGTAACTCACAACATCAACAAT
CCTGTGATGCATGAATATGGAGAAAACCACTTTGATAGCAATAAGATTAG
TGAAGCTCAAAGTACATTCCCCACTGGTCAGACAGAATTACCCAATGGTG
CCATATCTCAGCGTTCGTCACCATCTACAACATCAATTTCTCCTAGAAGG
TATTTGATAATTAATTCAGTGATATAAGAAATTTGAAAATGTATTGAATG
AATTTTGTGATAGACAGTAGACTGTTACAGCTATGACATTACATGTCATT
TTTCAGGTATCAATTGGAGGGTGACTTTGATCGTGGTCGACTGATGACAA
TGGCTGATATAGGTGATCCTGGAAGCTCACTGAAGCAGGTGCTCCCTTAA
CTTTCAAACAAATTTTTATGTGAATCTTGTATGTTGCACTGTTCCTAGAT
ATCACATAACATTTCTTTATGATTCACTTTTCACAAATATGTGTAGGAAT
TAGTTGTTAAGGCTAGGGAAAATGATGCTGAGATTTCGCAGTTGCGGAAA
CATCTTGCTGAATATTCAGTGAAGGTTGGTAGTTGCTATCAGTATTTATA
ATATAGTTCATATATTTTAGGTTCTAATATCTGCTTTTTTTGTTGTTCAG
GAAGTACAACTACATAATGAGAATTATGTTTTAGAGAAACGTATTGCTTA
CATGCGCATGGTAAGAAATAAACTATTTTCAATTCTCTTGCTTCCCTTTT
TTTGTGCACGCACTTACTTATACATGGAAATCCATTCTCTTCTATCTAAA
AACTTTATCTGATTTCTTGAGTTAACTCTATTTTCTCAAACACATCGTTT
TATTTGTCATCTAACACTTTTTTATTGAATATCTCCCATCTAACACTATA
TTTTGACGGAGAATTATATCCTAATGCTTTTTTGTATAGGCATTTGATCA
GCAGCAACAAGAACTCGTTGATGCTGCATCTAAAGCTATCTCTTATAGAC
AGGACATAATTGAGGAAAATATACGTCTTTCGTATGCATTGCAGGTCTTC
ACTTTTTTCCGAACTTTAATCGTGTTCTTGTGGTTGATCTTGTAAGTCTT
TTTACTTTTTTTAGAGATTTCTATTTCCGTTTAAGGACACTGAAAAACTG
ATGTCCCAAATGCTGTCGTTTTGATGCGAGTAAGTCGGCAAAGGCATATG
AAAGTTTGCTTCTTGTACATAATCTCTTGGTTTGAAATCAACATATGTTG
TATTTGATCATATATATAGGACTTACAACATGCATATTGTCAAGTAGGAG
TTTTCTCCAAGTTTCTTAGATATCTGATTGAATAGGTTATCTTTCTACTT
TCTAAAGATAACTGCTAGTATTTTTTATGCCAGGAGTATTTAGTTTCGCT
TGTTTTGTTTTTCCTAATAAAAAACAGGAAGCACAGCAAGAGAGATCAAC
ATTTGTATCATCTTTAGTGCCTGTTATTGCTGAATATTTCTCTCCGCCAC
CAGTTGCTGATGCTCAAAATATTGTTAGTAATCTTAAGGTAAAGTGGTTT
TGCCTCTCTTTGTGATAATGTAGAAAAAAAAAGTTTTTTTTTTGTGTAAG
GCTTTGAGCACAGCTGCATTCCGAGACTTAATAATTCCCCTTTTATGACG
CGAAATTCAGTGTAAAATGATGTGCTGTTTTTGGGCAAGCCTTCCCGGGG
GCTGACCTCTGGGACTTGGCTGCAAGATATTCCTCTTGGAGTAGTTTATA
CCATTCTAATCTTGACTTGTATCCTTAATTTACATGTTTGCAGGTCATAT
TCAAACATTTGCAGGAGCAGCTAATTATTACTGAGGTATGATGTGCATAT
GTAAGTGGTCTGCAGATATCTCATAGTTTTAGGTCCGCAGACTGCAGATA
TGCCATAAGTTTAGTTAAATTTTTGCGCTTATAAATGCATTTAATAAATA
GTTGTCCTGTCAGTTATATATTGCTAATATCACAGCCCTAATTATTTGGC
CTGACAAGTGGGTCATCTTTCAACTGACAGTCAAAGCTAAAGGAGTCTCA
GTATCAAATTGCACCATGGCATTCTGATACAAACCTGACAAACTTTGCTC
AGTCACCATCTCATTCCCTTCTGGTAGAATTGACAGTGTCTATGTCTTCA
TGTTTCTATCTTTCTTCTTTAGTGTTCGGTTGTAATCTGCTTTGTTTCTC
TGACAGCAAAATGAGCTTGGCATGGTGCCTCAACCAGTGTATTCTAAAGA
AGAGTTAGCGCCATCTGGCCCTTTGAAAGATAGAAATTGGGATTTATCGG
GAGATCAAGAGAGCATTTTAAATGGCGGTGTTGCTAAGAATTTAGAGACA
GATGAATTCGGGAGGTATTCAGCTCTTTCAAGAAGGTGAGCTGAGTCAAA
ATGGAGACTGCTAATTCTGAACTGTTTATTACAGTCGCAATCATCAACAT
TTGTTGGTGGGTTCTGGTTTCATTGAATCTTTCATGTTTTGATGTCTAAT
ATAGTAATATGTAATGCCCTAACACTGTTTGGCATTTTCCCCATATGAGC
AGGATAACCTTACTGAGCAGTTAAAGAGTACAGATGCTACCAACCTTACT
TTTACGCTACAGACCAGTGGTCCTAACTTCTTAAACTAGCAGTATCATAA
TGATGAATTGTTATTTCATTTACAACAAGTGCAAACATGTTCAACTTCAG
CCTCATACACATCCAATTTATATATGTTAAACATTTAAGGTTGCCACATA
AATATTGCTTCTGCTTAGATTTGTTTCATTTTGAACCTTTAGAGTCCCCA
CATAATATGAGGGATACATAGTTGTTGCTTCTGCATAGTTCTGCTCCTCC
TCTCAATTCACTTCCTGGAGGTTGCTTCTCTAGCATAATATTTGATTGGG
GAATGATCTTTCCAGGTCTCTTCCATTTAGAAGTCAAATGCTCCGAAGCT
CAAATCTTTTTGGTTGGTGATTGGTCTTAGGTTAATATGAAACTGAGTGC
AGTGGAGACTTACATTGAACATAGAAGTTTTTTTTTTTATCAAATTTGTG
TATTTTTTTGTGGGATAGCTCGTGTATATGTGATTGTTGTTCGGCTTTTG
TCCAATTAGGCTCTGCATTAATTTTTTCCCCCTCTTTTCAGGAATCCTGC
ATCCCAAGTGGGACCTGAACAGCTTACAGTCAGTCCAAGTGATTCACTTC
CACGTAACAGTGAAATGACCTCAAATAGACAAGTTAAATTTAGTGATACT
GTTAGTAGCATTGAGATGGACGACCCAGACATGGAAGGGCAACAAATTGG
AAGAGATCCTTCAGCTAATTGGAGTTCTAGAAACTCGCCTTATGCAGCAG
ATGATCACATTACCTCGTATTCTCCTTATCTACCTCCAGTTCTTGAGGAG
CCTTCTTCCTCTTTCTCTGAAGGTGACCATTCTACTATCAGGATTATATT
ATTCTTTAAGCACTGCTCTTCATAATATGAGATCTTGCAATATTTAGCTG
CAGATGACGACCCATTACCTGCAGTTGAGGGCCTACAAATTTCTGGGGAA
CCTTATCCAGGACAAGAGCTACAAGCAAGTGGATTCTCCATAAATGGAAC
CACAAGTTGTAATTTTGAGGTGCTGTTATCATTAGAGATTTCAATCTTTT
TTCTTTTGCTATATAGAGATTTCAATCTTTTATTGCTTAAGATTTTAATT
TAGTAATGACATTGTGTATCTTTTTTCCAAACTTGTAGTGGGTACGCCAT
TTAGAAGATGGATCTGTTAATTATATCGATGGTACAGTTCTGTCATTTTG
GTTGTGTGTTCTTATATAACATTCTTTTCATCTTACAAAGTTCCTGATTG
CAGGGGCAAAGCAACCAACCTACCTTGTTAGTGCAGATGATGTGGATAAT
TATCTTGCCATTGAAGTCCAGCCCATGGATGATAGGAAGCGAAAGGTACT
GCATTACTGTTCTATGATTTTGCAGCTGGACTATTGTCATGTGTTTGTAA
CATCCCACATCGGTTAGATAAAAGAGTATTCGGGTCCTTAATAAGCACAA
GCAAATAACTAATGTATACCGATTTGCTAGCACTTTTGGGCCGACCTGTG
GTGGGTTGTTGGGTCCAGTATGCATCTAGTTGTGGGTTTGGGATGTTATA
TATATATGTATGTATGTTGTAGATTTTTACGTATCCTGAAGTTTTAGGTA
CTAATTTAGTTAACCAGATTCTGGGTGAGTGAAGCTGTACTATAGTTCTA
AGGTAGCTTGTTCCTTTTATATATGCAGGGCGAGCTTGTTAAGGTTTTCG
CCAATGACAACAGAAAGATTGCCTGTGGTAAGCCTACAATTTATGATGCT
CATACATGGTTTTCAAGACTTGGCAAATTAAAAATAGTCTGGGTAAACTT
ATATCTGCAGTGTATTTATGTAATTATTAAGGCCCCATTTGGCTTACCTT
ATTTTAAATTATACCTTCTTTCTGGAAACAAGTATTTATTGAATGTAACC
TATTAACTGCTTATTTCTAAACAAAAGTACGTAAATATCTACTCTTTTCA
GAAAATAAGTAGAGCTAGCAGGCTCTAAGATCATCTTGACTTGCTCTTTA
GCTAAATATGCGTAAATACTTGTAGCAGAAAGTCTTCATTCTAACACAAG
AAATGCTTACTGCCCATTCAATGATGATATTGTATTTCGTTGGGTGGATT
TACAAATTATCTGCTTTGTTCTTCACTTAAAGCCAGCACTTCCCTCAAAT
TAGAGGTGAAAATGGTAAATTTATATGTAGAAGCAAATATGTGCATCACA
TGATTTCCGGAGTTTAGTTTATACTAGTAGAAAATTTTGACAAGAAATTT
TTTACTCCTGTATGTAACTTAAGTGTGTTGTTGGGAGAACATTATCAGAT
AGTGACCTTGTAAATTTTAATGATTCTGGGTTCACCACTCATAGTTGCTA
TACTTTTGGACTACAATGATATATTATATTATTCCCAATTCTATGGAACT
TTAAGTTCTCATGCTTCACTTTATATACAAGGGTGATCGATATTCTGTGT
CCTTTTGATAATTATCATAGAACTGGTTGTATCTTTGAGATTTGTTTTGG
ATGATCTAATACTTGTATTTCTTCTTTCACAATCTTATGCTACACATAAA
GAAGCTTATGTGCAGATCTGAGTGACAGGTTGTTCTGTTTAATTTGAGAA
ATTTGTGCAGCGAATATGTCCTACACACCAGTTTGGTCATTTAAAATAGT
ATCTAACCAGAGTGCCTATGGTTTACTACATTATTAATTTAAATAAACTT
AAGAAGACTTTTGTCATGGACTACATTGTTTTGTGTGTAAAAGTCAATAT
TGACTTAAAAGCACTCTTCTATATATATCTGTCCTTTTCAGTTCTTGCTT
TTGTCTGTGTTTGGTGCTTGATCTACAAAAGTCCTTTGTCGTTCAGATTG
GGTATTTCTTGTTCTAGACTTTCTAGAGACTTCAATTTAGTACTCGCTGT
ATTTCTAATATATACTGTATTAGCTCTTAGTTTTGTATTGTTTCTGCCTT
TGTGTTTCTAACTTATATATGACCATGGCTTACCCTTTGATTGCAGATCC
TGAGATGCACAACATCATAAGGAGGAACTTACAGGCTGGCCAAGCTTCCT
ATAGGATATCTCAGTCGGTAAGATTAATATTGTTCCTGAAAATCTTTGTT
ACATCTGGTTGGCCATAATAGATTGTTTTTTAAGGAGAAAACAAATTTTT
GTATACTTTTTTCTGACTGACAGGTGGGTTATCTTGATATGTGGGAATCT
GCTATTTTGGTTGTCAAGAAAGAAGGATTTAATATTAAGGGTACTGGAAG
CAGTACAAGTTTAGTGACAGAGAAATTTTCATCAGCCACTAGTGTATGCT
ACCTTATCCTTATGTTCTAATTCTTGAGGTTTAACTTTGCTAGGCATGAA
ATATGAAGAGGGGCATTATTTTGTTATTATTTCCATTATCAGCATTAACT
GGAATAAGAATTTTCTGTTTTTGAAATAGGAACCTTGTACAGGTTGGTTT
TGGTGTGTAGTTATAAGACTATATTGATCTGAAGTTCTATTCTGTCTTGC
CAATTGAATGGATTATTTGAACCTGAACTCTCACCAGCTTCCTAGTCTGA
AATTGTTTTCCTTGAAACTATCATAAATTTTCTGATAAAATCAGTTATAG
AAGCCTTTATGTGACTGATGTCTGGTCTTCACTAGATTTATTCTATATAG
TGCTTTAAAACATATCTCGTAAGTCTTACATCTCCTGTTCCAGGTTGTTG
TACCATGTGGACATCCTACGGAATTCTCAATAATATCAGGTGGGGTTGAA
TACCATCTGCAAGCGGAAAACAGCCCAGAAGATATCACCGGGTCAGTAGT
CACACAAGCCATAAACAACTTTTAATGATTATTTNCCCGGGTCAGTAGTC
ACACAAGCCATAAACAACTTTTAATGATTATTTATACAGTGGTGACTGAA
TACACTCTTTGGACAGTCTTTAGCAGAGCAACCAAGATAATACCATAATT
TGGTATTTGGTATTTGGTATTTTTTTTCATTGATACTTGATTAAAAATTA
GAATTGGTGCAGTTTTCACCTCACACGTCCTTATTTATGTCCCTTATGTA
GTTATATGTGTTATTTATAAACATTTTACTGTCTCTTATTGTTCAAACAC
AATATTTAATTACCCGATCAGCTATCTTGTACATAACCTTTATATTCAAT
AATCCCTCTTTTCCTATTTAGTTTGAGTCCCTTGATGCTTTCTTTCTTTG
TATACAACTTGTGCGTTCTTTATTCTCTCAGTTAGGACAGACTTTTAATG
CTCTTGATTTACCTTTTCCCTGTATACTAAATTCCACTTACAAATTCCTC
ATTTAGGTCTTTTATGCTAGATGGTCTGCGCCATTTTAGACTATTGATTT
GCTTTGGCCACTTAAATCACTAAAATGTCTGTCTAATGTCTATCATTATT
ATGCATTAAAAGGGCTCTTAATCACTGAACTACTTGATGTTTTTTTTCCT
GAAAACTAAGGCCATGGTTATTTTCAGGAATTATAATCCCTGGACCTTTA
TATTACTGTTATCTCATAGAACTAAATTTCAGTAAAATATTTAGTTCATT
GACATGGAATTTAAATACCTAGTAATAAATCTTAGAAAGTATTATATTCC
ATAAAAATGAACCAAAAGATGATAAAATGTAGTTCTATTGGGATAATGGT
CCTTAAAATTTAGAATAAACAAGGCGATAGTGGGGGTTAAAGTCTTTTCA
AACAAACATGGCCTTAGAATATATATATATAGGAAGCAATAGTCCCTACT
TCTGGATAAATTTCTCATCCTCTGTGCTCTTGTTTGTACCAGCTCTTTCG
TCTGCAGTCTGCTACATAAACATTGCTGTCCAGTTGTCTAAATTATAATC
ACTTTAATTTGAGTAAAACCTTATTAAATTTATAATTGCCTAAAAGACTA
TTGGAAGACATGTCGGTGCAGCCTAGCCCGCACCCTTATATTATTCTTTT
GGGGTTTTTCTCAGTCCCAGTTAGCTGGTTACAACAGTACTTTCTTCTTC
CCCCCTTATATTTGCCGAAGCCGAAAAGTTGAAATGCTTGCATCAGAAAT
AATGGTGCATGTTACGTGTGTCTGCTTTATATGTTTTGCAACATACAGTT
TCATATACAGTCCTAGTGTTTATTTGACTTTACTCCCATCTTCTTTCTAC
AGTGCAAGAGACACTATTGTTCTAACACTGAGATTATTTATCGTGCGGGT
AAGTCTTTGCTTGTCTAAGTTAATGATTAAGTTGCATTTCTCTTCTTTCT
TAAAAGCATATTCTTTGTGTGAGAACTGATAACTATATAGCTCTCCGTAT
GTCTTAAAATCTGTTACTTTCTATAACTAGATTGGATGGTGCGTATGTAA
GTGTGATAAGTATTAGTTCCTGATAGGAGTGTCTGAGCCCTGGTATATGA
TGATTTTAGATAGAAGTCTCCACAAGATTGTTGCATAAAACCGAAATTCG
TGGCAGTCTCCTTTTGCATTTGTAGCCCCTGTCATTCAATATTAAACAGA
TAGTATTTAGGCAAATTTTAATTACCACGTGAAGTCCTTCAGCCAAAAAA
GCATTTTAGTCTTCTTTTTTGAGCAAAACTAAACTGATTTGAGCTTATCC
AGTTTGCAACAAGAGTTCCAAGATCCAGCTTCAGTTCATTGTGGAAAAAC
TAACTCAATGTTCTCTGAAATATATTCCCTACCTCCGGTGAAGGATGAAA
TTGTTCAATAATTATCCCTGGTCTTGTAGTTGCTCGACTTTTCTGCACCT
AACATTTAGAGATCCTTTGAGCTTATGATTTATTTGCATTTATGATGTAG
CTTGACTAG
Sequence Length:
13209
Sequence Checksum:
450acb6ca3bf076f9be0b42152636ac1
View location in JBrowse:
Cds:
>DCAR_009627cds ATGGAGAATGGAGCGAGTGATTTGGCTTATAAGTTTGCGGGATTGGGGAT TAACAACAACGAGACTAGTAGTGATGCCGCCTTGTTCCAGGTTATGAAAG CAGTTGAAGCTGCTGAGGCTACAATTAAACAACAGGTGGAAGAGAACAAT CGCTTGAGGTCTGAACTACTAAGAAAGCACCATGAAATTGAAAAATATAA AGTGGCTGATTGGACACCTCAAAACCCTCTTTTAGTTGATAACTGGGATG GCCATGCCCATGGATATCCAGGAATTGATCGATCAAATTATCGTCTCGCG AATCCAACAGGTGTAGCCAGTAGCCTGAATAGCTCGTCTGCACATGGTCC ATCTGGTACATCAGGCCTAAGGAAAGAAGTAACTCACAACATCAACAATC CTGTGATGCATGAATATGGAGAAAACCACTTTGATAGCAATAAGATTAGT GAAGCTCAAAGTACATTCCCCACTGGTCAGACAGAATTACCCAATGGTGC CATATCTCAGCGTTCGTCACCATCTACAACATCAATTTCTCCTAGAAGGT ATCAATTGGAGGGTGACTTTGATCGTGGTCGACTGATGACAATGGCTGAT ATAGGTGATCCTGGAAGCTCACTGAAGCAGGAATTAGTTGTTAAGGCTAG GGAAAATGATGCTGAGATTTCGCAGTTGCGGAAACATCTTGCTGAATATT CAGTGAAGGAAGTACAACTACATAATGAGAATTATGTTTTAGAGAAACGT ATTGCTTACATGCGCATGGCATTTGATCAGCAGCAACAAGAACTCGTTGA TGCTGCATCTAAAGCTATCTCTTATAGACAGGACATAATTGAGGAAAATA TACGTCTTTCGTATGCATTGCAGGAAGCACAGCAAGAGAGATCAACATTT GTATCATCTTTAGTGCCTGTTATTGCTGAATATTTCTCTCCGCCACCAGT TGCTGATGCTCAAAATATTGTTAGTAATCTTAAGGTCATATTCAAACATT TGCAGGAGCAGCTAATTATTACTGAGTCAAAGCTAAAGGAGTCTCAGTAT CAAATTGCACCATGGCATTCTGATACAAACCTGACAAACTTTGCTCAGTC ACCATCTCATTCCCTTCTGCAAAATGAGCTTGGCATGGTGCCTCAACCAG TGTATTCTAAAGAAGAGTTAGCGCCATCTGGCCCTTTGAAAGATAGAAAT TGGGATTTATCGGGAGATCAAGAGAGCATTTTAAATGGCGGTGTTGCTAA GAATTTAGAGACAGATGAATTCGGGAGGTATTCAGCTCTTTCAAGAAGGA ATCCTGCATCCCAAGTGGGACCTGAACAGCTTACAGTCAGTCCAAGTGAT TCACTTCCACGTAACAGTGAAATGACCTCAAATAGACAAGTTAAATTTAG TGATACTGTTAGTAGCATTGAGATGGACGACCCAGACATGGAAGGGCAAC AAATTGGAAGAGATCCTTCAGCTAATTGGAGTTCTAGAAACTCGCCTTAT GCAGCAGATGATCACATTACCTCGTATTCTCCTTATCTACCTCCAGTTCT TGAGGAGCCTTCTTCCTCTTTCTCTGAAGCTGCAGATGACGACCCATTAC CTGCAGTTGAGGGCCTACAAATTTCTGGGGAACCTTATCCAGGACAAGAG CTACAAGCAAGTGGATTCTCCATAAATGGAACCACAAGTTGTAATTTTGA GTGGGTACGCCATTTAGAAGATGGATCTGTTAATTATATCGATGGGGCAA AGCAACCAACCTACCTTGTTAGTGCAGATGATGTGGATAATTATCTTGCC ATTGAAGTCCAGCCCATGGATGATAGGAAGCGAAAGGGCGAGCTTGTTAA GGTTTTCGCCAATGACAACAGAAAGATTGCCTGTGATCCTGAGATGCACA ACATCATAAGGAGGAACTTACAGGCTGGCCAAGCTTCCTATAGGATATCT CAGTCGGTGGGTTATCTTGATATGTGGGAATCTGCTATTTTGGTTGTCAA GAAAGAAGGATTTAATATTAAGGGTACTGGAAGCAGTACAAGTTTAGTGA CAGAGAAATTTTCATCAGCCACTAGTGTTGTTGTACCATGTGGACATCCT ACGGAATTCTCAATAATATCAGGTGGGGTTGAATACCATCTGCAAGCGGA AAACAGCCCAGAAGATATCACCGGTGCAAGAGACACTATTGTTCTAACAC TGAGATTATTTATCGTGCGGCTTGACTAG
Pep:
>DCAR_009627pep MENGASDLAYKFAGLGINNNETSSDAALFQVMKAVEAAEATIKQQVEENN RLRSELLRKHHEIEKYKVADWTPQNPLLVDNWDGHAHGYPGIDRSNYRLA NPTGVASSLNSSSAHGPSGTSGLRKEVTHNINNPVMHEYGENHFDSNKIS EAQSTFPTGQTELPNGAISQRSSPSTTSISPRRYQLEGDFDRGRLMTMAD IGDPGSSLKQELVVKARENDAEISQLRKHLAEYSVKEVQLHNENYVLEKR IAYMRMAFDQQQQELVDAASKAISYRQDIIEENIRLSYALQEAQQERSTF VSSLVPVIAEYFSPPPVADAQNIVSNLKVIFKHLQEQLIITESKLKESQY QIAPWHSDTNLTNFAQSPSHSLLQNELGMVPQPVYSKEELAPSGPLKDRN WDLSGDQESILNGGVAKNLETDEFGRYSALSRRNPASQVGPEQLTVSPSD SLPRNSEMTSNRQVKFSDTVSSIEMDDPDMEGQQIGRDPSANWSSRNSPY AADDHITSYSPYLPPVLEEPSSSFSEAADDDPLPAVEGLQISGEPYPGQE LQASGFSINGTTSCNFEWVRHLEDGSVNYIDGAKQPTYLVSADDVDNYLA IEVQPMDDRKRKGELVKVFANDNRKIACDPEMHNIIRRNLQAGQASYRIS QSVGYLDMWESAILVVKKEGFNIKGTGSSTSLVTEKFSSATSVVVPCGHP TEFSIISGGVEYHLQAENSPEDITGARDTIVLTLRLFIVRLD*